RPS-BLAST 2.2.22 [Sep-27-2009]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= gi|254780868|ref|YP_003065281.1| birA bifunctional protein
[Candidatus Liberibacter asiaticus str. psy62]
         (252 letters)



>d2zgwa2 d.104.1.2 (A:1-188) Biotin--[acetyl-CoA-carboxylase] ligase
           catalytic domain {Archaeon Pyrococcus horikoshii [TaxId:
           53953]}
          Length = 188

 Score = 93.7 bits (232), Expect = 1e-20
 Identities = 60/188 (31%), Positives = 92/188 (48%), Gaps = 17/188 (9%)

Query: 15  RYEFFDTISSTNDECMKRALSGDLGNLWIVASCQTAGRGRRDNKWISDKGNLYASLLLID 74
           R  +F  I+STN+      L        IVA  QT G G  + KW S +G L+ S++L  
Sbjct: 12  RVIYFQEITSTNEFAKTSYLEE---GTVIVADKQTMGHGALNRKWESPEGGLWLSIVLSP 68

Query: 75  SISKDSLTLLSFAIAVAMRSVIASTLPVGTDVKIKWPNDILVFQRKIAGILIETLNLKNG 134
            + +  L  + F  AV +   +        D +IKWPND+LV  + IAG+L+E       
Sbjct: 69  KVPQKDLPKIVFLGAVGVVETLKEFSI---DGRIKWPNDVLVNYKAIAGVLVEGKG---- 121

Query: 135 LQAVVVGIGLNVKHCPVDTPYPVTSLQREGGC-IDLKDIFSLLFQDVARVLDLWKKDTGR 193
              +V+GIGLNV +     P   TS++ E G  + L  +F  L  ++ R+   + K+   
Sbjct: 122 -DKIVLGIGLNVNN---KVPNGATSMKLELGSEVPLLSVFRSLITNLDRLYLNFLKNP-- 175

Query: 194 EEIMNLWR 201
            +I+NL R
Sbjct: 176 MDILNLVR 183


>d1biaa3 d.104.1.2 (A:64-270) Biotin repressor/biotin holoenzyme
           synthetase, catalytic (central) domain {Escherichia coli
           [TaxId: 562]}
          Length = 207

 Score = 80.4 bits (197), Expect = 1e-16
 Identities = 53/192 (27%), Positives = 85/192 (44%), Gaps = 8/192 (4%)

Query: 14  FRYEFFDTISSTNDECMKRALSGDLGNLWIVASCQTAGRGRRDNKWIS-DKGNLYASLLL 72
                   I STN   + R      G    +A  Q AGRGRR  KW S    NLY S+  
Sbjct: 16  GSVAVLPVIDSTNQYLLDRIGELKSG-DACIAEYQQAGRGRRGRKWFSPFGANLYLSMFW 74

Query: 73  IDSISKDSLTLLSFAIAVAMRSVIASTLPVGTDVKIKWPNDILVFQRKIAGILIETLNLK 132
                  +   LS  I + M  V+         V++KWPND+ +  RK+AGIL+E     
Sbjct: 75  RLEQGPAAAIGLSLVIGIVMAEVLRKLGA--DKVRVKWPNDLYLQDRKLAGILVELTGKT 132

Query: 133 NGLQAVVVGIGLNVKHCPVDTP---YPVTSLQREGGCIDLKDIFSLLFQDVARVLDLWKK 189
                +V+G G+N+    V+         +LQ  G  +D   + ++L +++   L+L+++
Sbjct: 133 GDAAQIVIGAGINMAMRRVEESVVNQGWITLQEAGINLDRNTLAAMLIRELRAALELFEQ 192

Query: 190 DTGREEIMNLWR 201
           + G    ++ W 
Sbjct: 193 E-GLAPYLSRWE 203


>d1biaa2 b.34.1.1 (A:271-317) Biotin repressor/biotin holoenzyme
           synthetase, C-terminal domain {Escherichia coli [TaxId:
           562]}
          Length = 47

 Score = 30.7 bits (70), Expect = 0.13
 Identities = 12/44 (27%), Positives = 20/44 (45%), Gaps = 1/44 (2%)

Query: 207 IGDLITIKLSYGSILGRFVGVDDFGYLLLEEKKGCVRQIFTGDI 250
           I   + + +    I G   G+D  G LLLE+    ++    G+I
Sbjct: 2   INRPVKLIIGDKEIFGISRGIDKQGALLLEQDGI-IKPWMGGEI 44


>d3sila_ b.68.1.1 (A:) Salmonella sialidase {Salmonella typhimurium,
           strain lt2 [TaxId: 90371]}
          Length = 379

 Score = 29.2 bits (64), Expect = 0.37
 Identities = 9/67 (13%), Positives = 24/67 (35%), Gaps = 3/67 (4%)

Query: 18  FFDTISSTNDECMKRALSGDLGNLWIVASCQTAGRGRRDNKWISDKGNLYASLLLIDSIS 77
              +  + N++  +  +S    NL+            +        G  Y+ L    ++ 
Sbjct: 293 AHSSAQNKNNDYTRSDISLYAHNLYSGEVKLIDDFYPKVGN---ASGAGYSCLSYRKNVD 349

Query: 78  KDSLTLL 84
           K++L ++
Sbjct: 350 KETLYVV 356


>d1iyjb4 b.40.4.3 (B:2732-2760,B:2898-2979) OB-fold domains of BRCA2
           {Rat (Rattus norvegicus) [TaxId: 10116]}
          Length = 111

 Score = 27.1 bits (60), Expect = 1.5
 Identities = 14/53 (26%), Positives = 30/53 (56%), Gaps = 7/53 (13%)

Query: 154 PYPVTSLQREGG---CIDL--KDIFSLLFQDVARVLDLWKKDTGREEIMNLWR 201
           P P++SL  +GG   C+D+  + ++ L +    RV    K++  +  ++++WR
Sbjct: 1   PLPLSSLFSDGGNVGCVDVIVQRVYPLQWVWKLRVTSYKKRE--KSALLSIWR 51


>d2zgwa1 b.34.1.1 (A:189-235) Biotin--[acetyl-CoA-carboxylase]
           ligase C-terminal domain {Archaeon Pyrococcus horikoshii
           [TaxId: 53953]}
          Length = 47

 Score = 26.3 bits (58), Expect = 2.6
 Identities = 13/36 (36%), Positives = 20/36 (55%)

Query: 215 LSYGSILGRFVGVDDFGYLLLEEKKGCVRQIFTGDI 250
           L  GS  G    +DDFG L++    G V+++  GD+
Sbjct: 7   LGDGSFEGIAEDIDDFGRLIIRLDSGEVKKVIYGDV 42


>d1zpda2 c.36.1.5 (A:2-187) Pyruvate decarboxylase {Zymomonas
           mobilis [TaxId: 542]}
          Length = 186

 Score = 25.2 bits (54), Expect = 5.6
 Identities = 7/26 (26%), Positives = 12/26 (46%)

Query: 138 VVVGIGLNVKHCPVDTPYPVTSLQRE 163
           V + I  N+   P   P P ++L  +
Sbjct: 161 VYLEIACNIASMPCAAPGPASALFND 186


>d1yoza1 a.253.1.1 (A:11-124) Hypothetical protein AF0941
           {Archaeoglobus fulgidus [TaxId: 2234]}
          Length = 114

 Score = 24.6 bits (53), Expect = 9.1
 Identities = 13/45 (28%), Positives = 24/45 (53%), Gaps = 2/45 (4%)

Query: 159 SLQREGGCIDLKDIFSLLFQDVARVLDLWKKDTGREEIMNLWRCF 203
           S++     +D K+IF +   D   +L+L+K  +G+ E   + R F
Sbjct: 20  SVEEADKLLDQKNIFEMFRSDCEEILNLYK--SGKAEKEEVQRNF 62


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.324    0.141    0.433 

Gapped
Lambda     K      H
   0.267   0.0439    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 953,421
Number of extensions: 43276
Number of successful extensions: 77
Number of sequences better than 10.0: 1
Number of HSP's gapped: 74
Number of HSP's successfully gapped: 14
Length of query: 252
Length of database: 2,407,596
Length adjustment: 83
Effective length of query: 169
Effective length of database: 1,268,006
Effective search space: 214293014
Effective search space used: 214293014
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 52 (24.5 bits)