HHsearch alignment for GI: 254780869 and conserved domain: COG0329
>COG0329 DapA Dihydrodipicolinate synthase/N-acetylneuraminate lyase [Amino acid transport and metabolism / Cell envelope biogenesis, outer membrane].
Probab=91.33 E-value=1.1 Score=24.07 Aligned_cols=179 Identities=17% Similarity=0.217 Sum_probs=97.8
Q ss_pred CCHHHHHH----CCCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHCCCC--EEEEECHHHHHHHHHHHHHHHHHC
Q ss_conf 89889986----087882999963564578887777879999999998627983--999941477899999999998718
Q gi|254780869|r 178 TDKDSLCA----IGNEGILALMCDSTNAMREGTCISEKGIKKNIYDIMKNAKGC--VLVTTFSSSVSRIRSIIDIAEQIG 251 (559)
Q Consensus 178 ~d~~~l~~----~~~~gv~~Li~esT~~~~~~~~~sE~~v~~~i~~~~~~~~gr--Viv~~fasni~Ri~~i~~~a~~~~ 251 (559)
T Consensus 22 vD~~a~~~lv~~li~~Gv~gi~~~GttGE~~~Ls--~eEr~~v~~~~v~~~~grvpviaG~g~~~t~eai~lak~a~~~G 99 (299)
T COG0329 22 VDEEALRRLVEFLIAAGVDGLVVLGTTGESPTLT--LEERKEVLEAVVEAVGGRVPVIAGVGSNSTAEAIELAKHAEKLG 99 (299)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEECCCCCCCHHCC--HHHHHHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHHHHCC
T ss_conf 3999999999999984998899798665722169--99999999999999689777898628777999999999999709
Q ss_pred CEEEEE-C--------HHHHHHHH-HHHHCCC----CCCCC---CCCCHHHHCCCCC-CCEEEE--EECCCCCHHHHHHH
Q ss_conf 869984-4--------86999999-8874287----67765---4226566223880-208999--96696326889885
Q gi|254780869|r 252 RKIVLL-G--------SSLKRVVS-VAIDVGI----IKKDQ---LFLSDESFGLYPR-EQLIVI--ATGSQGEPRSALAQ 311 (559)
Q Consensus 252 R~v~i~-G--------rs~~~~~~-~a~~~g~----l~~~~---~~i~~~~~~~~p~-~~~~ii--~TGsqge~~a~l~r 311 (559)
T Consensus 100 ad~il~v~PyY~k~~~~gl~~hf~~ia~a~~lPvilYN~P~~tg~~l~~e~i~~la~~~nivgiKd~~gd----~~~~~~ 175 (299)
T COG0329 100 ADGILVVPPYYNKPSQEGLYAHFKAIAEAVDLPVILYNIPSRTGVDLSPETIARLAEHPNIVGVKDSSGD----LDRLEE 175 (299)
T ss_pred CCEEEEECCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCHHHHHHHHCCCCEEEEEECCCC----HHHHHH
T ss_conf 9999984897889897999999999998518998999787524899999999998278988999847889----999999
Q ss_pred HCCCCCCCCCCCCC-CEEEEEEECCCCHHHHHHHHHHHHHCCCEEEEECCCCCCEECCCCCCHHHHHHHHHHCCC
Q ss_conf 20277765302689-669999615886177899999765103113430356664131578897899999975495
Q gi|254780869|r 312 LSRGEMRNVKLAEK-DTVIFSSRAIPGNEVAIGHIKNRLVEQGVRVIAEDAECPVHVSGHPYPNDLKRMYQWIRP 385 (559)
Q Consensus 312 ia~~~~~~i~l~~~-D~vI~ss~~ipGnE~~~~~~~n~l~~~g~~vi~~~~~~~iH~SGHa~~edl~~li~~ikP 385 (559)
T Consensus 176 ~~-------~~~~~~~f~v~~-----G~d~~~~~---~~~-~G~~-------G~is~~~N~~p~~~~~l~~~~~~ 227 (299)
T COG0329 176 II-------AALGDRDFIVLS-----GDDELALP---ALL-LGAD-------GVISVTANVAPELAVELYRAAKA 227 (299)
T ss_pred HH-------HHCCCCCEEEEE-----CCHHHHHH---HHH-CCCC-------EEEECCCHHCHHHHHHHHHHHHC
T ss_conf 99-------864876628982-----66588889---986-7798-------58841001279999999999987