HHsearch alignment for GI: 254780869 and conserved domain: COG1236
>COG1236 YSH1 Predicted exonuclease of the beta-lactamase fold involved in RNA processing [Translation, ribosomal structure and biogenesis].
Probab=100.00 E-value=1.2e-36 Score=282.56 Aligned_cols=383 Identities=23% Similarity=0.291 Sum_probs=247.9
Q ss_pred EEEECCCCCCCCCEEEEEEECCCCCCEEEEEECCCCCCCC--CCCCEEEECCCHHHHHHHHHCCCEEEEECCCCCCCCCH
Q ss_conf 9994068683466069999517778648999776767888--76750287079579876641246899605430121607
Q gi|254780869|r 7 VFLPLGGVGEIGMNMALYGYGSPSSRKWIMIDCGVSFPKD--DLPGVDLVFPDITFIMKERKNLMAIFITHAHEDHYGAL 84 (559)
Q Consensus 7 ~~~~lGG~~eiG~N~~~~~~~~~~~~~~iiiD~G~~fp~~--~~~gid~iiPd~~~l~~~~~~i~~i~iTH~H~DHiGal 84 (559)
T Consensus 2 ~~~~~g~~~evg~s~~~l~~~~----~~il~D~G~~~~~~~~~~p~~~-~~---------~-~vDavllTHaHlDH~g~l 66 (427)
T COG1236 2 TLRFLGAAREVGRSCVLLETGG----TRILLDCGLFPGDPSPERPLLP-PF---------P-KVDAVLLTHAHLDHIGAL 66 (427)
T ss_pred CEECCCCCCCCCCEEEEEEECC----CEEEECCCCCCCCCCCCCCCCC-CC---------C-CCCEEEEECCCHHHHCCC
T ss_conf 1453465578775468987479----7699658988576765576788-88---------8-767799600652432346
Q ss_pred HHHHHH-CCCCEECCHHHHHHHHHHHHHCCCCC----------------CCCEEEECCCCEEEECCEEEEEEECCCCCCC
Q ss_conf 888986-29977929999999999998548865----------------5622551755557763489999855677776
Q gi|254780869|r 85 HDLWSF-LHVPVYASPFAIGLLEAKRVYERVSK----------------KIPCISFQAGDKVDVGAFSIESVRVNHSIPE 147 (559)
Q Consensus 85 p~l~~~-~~~pIY~s~~t~~li~~~~~~~~~~~----------------~~~~~~i~~~~~~~~g~~~v~~~~~~Hsip~ 147 (559)
T Consensus 67 p~l~~~~~~~~v~aT~~T~~l~~~~l~d~~~~~~~~~~~~~~~~d~~~~~~~~~~~~yg~~~~v~~~~v~~~~AGH-ilG 145 (427)
T COG1236 67 PYLVRNGFEGPVYATPPTAALLKVLLGDSLKLAEGPDKPPYSEEDVERVPDLIRPLPYGEPVEVGGVKVTFYNAGH-ILG 145 (427)
T ss_pred HHHHHHCCCCCEEECHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHCEEEECCCCEEEECCEEEEEECCCC-CCC
T ss_conf 7887631278657535189999987311101035777776543456655522277058981786528999971797-410
Q ss_pred CCEEEEEECCCEEEECCCCEECCCCCCCCCCCHHHHHHCCCCCCEEEEECCCCCCCCCCCCCH--HHHHHHHHHHHHHCC
Q ss_conf 535679876817998334024677665423898899860878829999635645788877778--799999999986279
Q gi|254780869|r 148 TMALVIRSPVGNIVHTGDWKLDDDAILGDVTDKDSLCAIGNEGILALMCDSTNAMREGTCISE--KGIKKNIYDIMKNAK 225 (559)
Q Consensus 148 a~~~~I~t~~g~i~ytGDfk~d~~p~~g~~~d~~~l~~~~~~gv~~Li~esT~~~~~~~~~sE--~~v~~~i~~~~~~~~ 225 (559)
T Consensus 146 sa~~~le~~~~~ilytGD~~~~~~~l~~~a-------~~~~~-~DvLI~EsTYg~~~~~~r~~~e~~f~~~v~~~l~~-G 216 (427)
T COG1236 146 SAAILLEVDGGRILYTGDVKRRKDRLLNGA-------ELPPC-IDVLIVESTYGDRLHPNRDEVERRFIESVKAALER-G 216 (427)
T ss_pred EEEEEEEECCCEEEEEECCCCCCCCCCCCC-------CCCCC-CCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHC-C
T ss_conf 279999968947999823677778777776-------77888-87899806558877888789999999999998757-9
Q ss_pred CCEEEEECHHHHHHHHHHHHHHHHHC----CEEEEECHHHHHHHHHHHHCCCCCCCCCCC-CHH--------H---HCCC
Q ss_conf 83999941477899999999998718----869984486999999887428767765422-656--------6---2238
Q gi|254780869|r 226 GCVLVTTFSSSVSRIRSIIDIAEQIG----RKIVLLGSSLKRVVSVAIDVGIIKKDQLFL-SDE--------S---FGLY 289 (559)
Q Consensus 226 grViv~~fasni~Ri~~i~~~a~~~~----R~v~i~Grs~~~~~~~a~~~g~l~~~~~~i-~~~--------~---~~~~ 289 (559)
T Consensus 217 G~vlipafa--~graQEll~~L~~~~~~~~~pi~~d~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 294 (427)
T COG1236 217 GTVLIPAFA--LGRAQELLLILRELGFAGDYPIYVDGPIARVALAYAKYPIGLDLPDLLKVAESRFRFVESRRNSMREGI 294 (427)
T ss_pred CEEEEECCC--CCHHHHHHHHHHHHCCCCCCCEEECCHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCCHHHHHCCCC
T ss_conf 849994056--708999999999752457887774468999999998623567771677877621441331222110023
Q ss_pred CCCCEEEEEECCC---CCHHHHHHHHCCCCCCCCCCCCCCEEEEEEECCCCH-HHHHHHHHHHHHCCCEEEEECCCCCCE
Q ss_conf 8020899996696---326889885202777653026896699996158861-778999997651031134303566641
Q gi|254780869|r 290 PREQLIVIATGSQ---GEPRSALAQLSRGEMRNVKLAEKDTVIFSSRAIPGN-EVAIGHIKNRLVEQGVRVIAEDAECPV 365 (559)
Q Consensus 290 p~~~~~ii~TGsq---ge~~a~l~ria~~~~~~i~l~~~D~vI~ss~~ipGn-E~~~~~~~n~l~~~g~~vi~~~~~~~i 365 (559)
T Consensus 295 ~~~~~vi~a~~gm~~~g~~~~~~~~~~~~--------~~n~~~l~~~~~~~t~gr~~~~~~~~~~~~~~~i~~~~~ve~~ 366 (427)
T COG1236 295 DKGPAVVLAAPGMLKGGRSRYYLKHLLSD--------EKNWVLLPGYQAEGTLGRVLLEGGTSVHIKGIEIKVKARVEEL 366 (427)
T ss_pred CCCCEEEEECCCCCCCCCHHHHHHHHHCC--------CCCCEEEECCCCCCCHHHHHHCCCCEEEECCEEECCCCEEEEE
T ss_conf 57844999547200377346677765047--------6573884040125631446650771553123020345427987
Q ss_pred ECCCCCCHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHCCC--CCEEEECCCEEEEE
Q ss_conf 315788978999999754953999704577999999987874478--63155003227897
Q gi|254780869|r 366 HVSGHPYPNDLKRMYQWIRPQVLVAIHGEPLHLVAHKELALQEGI--ACVPPVRNGKMLRL 424 (559)
Q Consensus 366 H~SGHa~~edl~~li~~ikPk~~IPvHGe~rhl~~h~~la~~~gv--~~i~l~~NGd~i~l 424 (559)
T Consensus 367 ~~s~Had~~~l~~~i~~~~~~~v~~~Hg~~~~~~~~~~~~~~e~~~~~~~~~p~~~~~~~~ 427 (427)
T COG1236 367 DFSAHADGDELLEFIKDISPPKVVLVHGEPEYGAALRARLLEELIGIRELELPANGEEYEL 427 (427)
T ss_pred ECCCCCCHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHCCCCCEEECCCCCCCCCC
T ss_conf 1212478188999987369863999838611335899999985089632434776410259