HHsearch alignment for GI: 254780869 and conserved domain: TIGR02651

>TIGR02651 RNase_Z ribonuclease Z; InterPro: IPR013471 All tRNA molecules are synthesised as long precursors with extra sequence at both the 5' and 3' ends, which undergo several processing steps to form the mature tRNA molecule. In many bacteria the tRNA precursors do not contain the CCA sequence which forms the 3' end of the mature tRNA and is essential for aminoacylation. In these organisms ribonucleotide Z cleaves the precursor to form a 3' end to which CCA is added. Species where all tRNA sequences already have the CCA tail, such as E. coli, do not generally posses this form of ribonuclease Z. ; GO: 0016891 endoribonuclease activity producing 5'-phosphomonoesters, 0042779 removal of tRNA 3'-trailer sequence.
Probab=99.75  E-value=1.5e-16  Score=138.12  Aligned_cols=136  Identities=22%  Similarity=0.332  Sum_probs=92.6

Q ss_pred             EEEEEECCCC-CCCCCE--EEEEEECCCCCCEEEEEECCCCCCCCCCCCEEEECCCHHHHHHH--HHCCCEEEEECCCCC
Q ss_conf             3999940686-834660--69999517778648999776767888767502870795798766--412468996054301
Q gi|254780869|r    5 ELVFLPLGGV-GEIGMN--MALYGYGSPSSRKWIMIDCGVSFPKDDLPGVDLVFPDITFIMKE--RKNLMAIFITHAHED   79 (559)
Q Consensus         5 ~i~~~~lGG~-~eiG~N--~~~~~~~~~~~~~~iiiD~G~~fp~~~~~gid~iiPd~~~l~~~--~~~i~~i~iTH~H~D   79 (559)
T Consensus         1 ~i~fLGTGg~~Pt~~Rn~~si~l~~~~e~-g~~~LFDCGEG----TQ~---------Q~~~~~~~~~~i~~IFITH~HGD   66 (327)
T TIGR02651         1 EITFLGTGGGVPTKERNVSSIALKLEDER-GELWLFDCGEG----TQR---------QMLRSGISPMKIDRIFITHLHGD   66 (327)
T ss_pred             CEEEEECCCCCCCCCCCCCEEEEECHHHC-CCEEEEECCCH----HHH---------HHHHCCCCCCCCCEEEEECCCHH
T ss_conf             95898527788775647758999602242-87425547718----999---------99971688631113687066314


Q ss_pred             CCCCHHHHHHHCC---------CCEECCHHHHHHHHHHHHHCCC--CCCCCEEEECCCC-----------------EEEE
Q ss_conf             2160788898629---------9779299999999999985488--6556225517555-----------------5776
Q gi|254780869|r   80 HYGALHDLWSFLH---------VPVYASPFAIGLLEAKRVYERV--SKKIPCISFQAGD-----------------KVDV  131 (559)
Q Consensus        80 HiGalp~l~~~~~---------~pIY~s~~t~~li~~~~~~~~~--~~~~~~~~i~~~~-----------------~~~~  131 (559)
T Consensus        67 Hi~GLPGLl~t~sf~G~~r~~pL~IyGP~G~~e~~~~~l~~~~~~~~y~i~~~E~~~~~~~P~~~~~k~k~l~~~~~~~~  146 (327)
T TIGR02651        67 HILGLPGLLSTMSFQGGGRKEPLTIYGPPGIKEFIETSLRVSYTYLNYPIKIHEIEEKGVLPEFVVYKEKLLEDGLVFED  146 (327)
T ss_pred             HHHHHHHHHHHHCCCCCCCCCCEEEECCHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCHHHHHCCCEEECCEEEEC
T ss_conf             55423688883103788864452886874479999999986223788415999726899773123102561202326765


Q ss_pred             CCEEEEEEECCCCCCCCCEEEEEE
Q ss_conf             348999985567777653567987
Q gi|254780869|r  132 GAFSIESVRVNHSIPETMALVIRS  155 (559)
Q Consensus       132 g~~~v~~~~~~Hsip~a~~~~I~t  155 (559)
T Consensus       147 ~~f~v~~~~l~H~~~-~~GY~~~E  169 (327)
T TIGR02651       147 DGFKVEAFPLDHSIP-SLGYRFEE  169 (327)
T ss_pred             CCEEEEEEECCCCCE-EEEEEEEE
T ss_conf             844899995057841-46789986