HHsearch alignment for GI: 254780869 and conserved domain: TIGR03675

>TIGR03675 arCOG00543 arCOG01782 universal archaeal KH-domain/beta-lactamase-domain protein. This family of proteins is universal in the archaea and consistsof an N-terminal type-1 KH-domain (pfam00013) a central beta-lactamase-domain (pfam00753) with a C-terminal motif associated with RNA metabolism (pfam07521). KH-domains are associated with RNA-binding, so taken together, this protein is a likely metal-dependent RNAase. This family was defined in as arCOG01782.
Probab=100.00  E-value=1.4e-45  Score=348.05  Aligned_cols=385  Identities=23%  Similarity=0.340  Sum_probs=256.5

Q ss_pred             CCCEEEEEECCCCCCCCCEEEEEEECCCCCCEEEEEECCCCCCCCCCCCEEEECCCHHHHHHHHHCCCEEEEECCCCCCC
Q ss_conf             88639999406868346606999951777864899977676788876750287079579876641246899605430121
Q gi|254780869|r    2 KNEELVFLPLGGVGEIGMNMALYGYGSPSSRKWIMIDCGVSFPKDDLPGVDLVFPDITFIMKERKNLMAIFITHAHEDHY   81 (559)
Q Consensus         2 ~~~~i~~~~lGG~~eiG~N~~~~~~~~~~~~~~iiiD~G~~fp~~~~~gid~iiPd~~~l~~~~~~i~~i~iTH~H~DHi   81 (559)
T Consensus       171 ~~~~vrit~LG~~~eVGRSc~l~~~~~----~~illDcG~~~~~~~~---~-~~P~~d~~e~~~~~IDAVvlTHAHLDH~  242 (630)
T TIGR03675       171 KDRWVRVTALGGFREVGRSALLLSTPE----SRILLDCGVNVGANGD---N-AYPYLDVPEFQLDELDAVVITHAHLDHS  242 (630)
T ss_pred             CCCEEEEEECCCCCCCCCEEEEEECCC----EEEEEECCCCCCCCCC---C-CCCCCCCCCCCCCCCCEEEEECCCCCCC
T ss_conf             897499983467670264589996398----1799988888777775---4-5886567779801185899833532125


Q ss_pred             CCHHHHHHH-CCCCEECCHHHHHHHHHHHHHC-------CCCCC----------CCEEEECCCCEEEEC-CEEEEEEECC
Q ss_conf             607888986-2997792999999999999854-------88655----------622551755557763-4899998556
Q gi|254780869|r   82 GALHDLWSF-LHVPVYASPFAIGLLEAKRVYE-------RVSKK----------IPCISFQAGDKVDVG-AFSIESVRVN  142 (559)
Q Consensus        82 Galp~l~~~-~~~pIY~s~~t~~li~~~~~~~-------~~~~~----------~~~~~i~~~~~~~~g-~~~v~~~~~~  142 (559)
T Consensus       243 G~LP~L~k~Gf~GpIy~T~pT~dL~~llL~D~~ki~~~e~~~plYt~~dv~~~l~~~~~l~y~~~~~i~~~ik~tf~~AG  322 (630)
T TIGR03675       243 GLVPLLFKYGYDGPVYCTPPTRDLMTLLQLDYIDVAQREGKKPPYSSKDVREALKHTITLDYGEVTDIAPDIKLTFYNAG  322 (630)
T ss_pred             CCCCHHHHCCCCCCEEECHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHCCEECCCCCEEECCCCEEEEEECCC
T ss_conf             63218876488898886545999999999989999870589999899999999844562489985971798499997688


Q ss_pred             CCCCCCCEEEEEECCC--EEEECCCCEECCCCCCCCCCCHHHHHHCCCCCCEEEEECCCCCCCCCCCCC----HHHHHHH
Q ss_conf             7777653567987681--799833402467766542389889986087882999963564578887777----8799999
Q gi|254780869|r  143 HSIPETMALVIRSPVG--NIVHTGDWKLDDDAILGDVTDKDSLCAIGNEGILALMCDSTNAMREGTCIS----EKGIKKN  216 (559)
Q Consensus       143 Hsip~a~~~~I~t~~g--~i~ytGDfk~d~~p~~g~~~d~~~l~~~~~~gv~~Li~esT~~~~~~~~~s----E~~v~~~  216 (559)
T Consensus       323 H-ILGSAmv~l~i~~g~~~ilfTGD~~~~~~rll~~A~-------~~~~~~D~LI~ESTYG~r~~~h~~r~e~e~~l~~~  394 (630)
T TIGR03675       323 H-ILGSAIAHLHIGDGLYNIVYTGDFKYEKTRLLDPAV-------NKFPRVETLIMESTYGGRDDYQPSREEAEKELIKV  394 (630)
T ss_pred             C-CCEEEEEEEEECCCCEEEEEECCCCCCCCCCCCCCC-------CCCCCCCEEEEECCCCCCCCCCCCHHHHHHHHHHH
T ss_conf             6-104479999976896799995998999776768756-------78777778999743577655689989999999999


Q ss_pred             HHHHHHHCCCCEEEEECHHHHHHHHHHHHHHHHH-------CCEEEEECHHHHH-HHHHHHH-CCCCCC----------C
Q ss_conf             9999862798399994147789999999999871-------8869984486999-9998874-287677----------6
Q gi|254780869|r  217 IYDIMKNAKGCVLVTTFSSSVSRIRSIIDIAEQI-------GRKIVLLGSSLKR-VVSVAID-VGIIKK----------D  277 (559)
Q Consensus       217 i~~~~~~~~grViv~~fasni~Ri~~i~~~a~~~-------~R~v~i~Grs~~~-~~~~a~~-~g~l~~----------~  277 (559)
T Consensus       395 I~et~~r-GGkVLIPaFA--vGRaQEll~iL~e~~~~g~lp~vPIY~Dg--Ma~~at~Iy~~yp~~l~~~lr~~i~~~g~  469 (630)
T TIGR03675       395 VNETIKR-GGKVLIPVFA--VGRAQEVMLVLEEAMRKGLIPEVPVYLDG--MIWEATAIHTAYPEYLNKELRERIFHEGE  469 (630)
T ss_pred             HHHHHHC-CCEEEEEEEC--CCHHHHHHHHHHHHHHCCCCCCCCEEEEC--HHHHHHHHHHHHHHHHCHHHHHHHHHCCC
T ss_conf             9999963-9829998633--65389999999999973999999899802--99999999999698759999999975689


Q ss_pred             C-----CC--C-CHHHHCCC--CCCCEEEEEECCC---CCHHHHHHHHCCCCCCCCCCCCCCEEEEEEECCCCHHHHHHH
Q ss_conf             5-----42--2-65662238--8020899996696---326889885202777653026896699996158861778999
Q gi|254780869|r  278 Q-----LF--L-SDESFGLY--PREQLIVIATGSQ---GEPRSALAQLSRGEMRNVKLAEKDTVIFSSRAIPGNEVAIGH  344 (559)
Q Consensus       278 ~-----~~--i-~~~~~~~~--p~~~~~ii~TGsq---ge~~a~l~ria~~~~~~i~l~~~D~vI~ss~~ipGnE~~~~~  344 (559)
T Consensus       470 nPF~~~~~~~v~~~~~~~~i~~~~~P~IIIAtSGMl~GG~~~~~lk~~~~--------dpkN~IifvGYQaeGTl--GR~  539 (630)
T TIGR03675       470 NPFLSEIFVRVEGSDERREIIESDEPAIILATSGMLNGGPVVEYLKLLAP--------DPRNSLVFVGYQAEGTL--GRR  539 (630)
T ss_pred             CCCCCCCEEEECCHHHHHHHHHCCCCEEEEECCCCCCCCHHHHHHHHHCC--------CCCCEEEEECCCCCCCC--HHH
T ss_conf             95347863992788888988717996699989610175079999998659--------99873999728889984--688


Q ss_pred             HHHHH-------------HCCCEEEEECCCCCCEE-CCCCCCHHHHHHHHHHCC--CCEEEEECCCHHHHHHHHHHHH-H
Q ss_conf             99765-------------10311343035666413-157889789999997549--5399970457799999998787-4
Q gi|254780869|r  345 IKNRL-------------VEQGVRVIAEDAECPVH-VSGHPYPNDLKRMYQWIR--PQVLVAIHGEPLHLVAHKELAL-Q  407 (559)
Q Consensus       345 ~~n~l-------------~~~g~~vi~~~~~~~iH-~SGHa~~edl~~li~~ik--Pk~~IPvHGe~rhl~~h~~la~-~  407 (559)
T Consensus       540 I~~G~kei~i~g~~~~~~i~V~a~V~~------i~gFSaHAD~~~L~~~i~~~~p~P~~V~LVHGE~~~~~~La~~i~~~  613 (630)
T TIGR03675       540 IQSGWREIPLTDEGKTETIKINMEVET------VEGFSGHSDRRQLMNYVRRMQPKPEKILLNHGEPSKILDLASSIYKK  613 (630)
T ss_pred             HHCCCCEEEEECCCCCEEEEEEEEEEE------ECCCCCCCCHHHHHHHHHHHCCCCCEEEEECCCHHHHHHHHHHHHHH
T ss_conf             855885114625877468999879999------57835677989999999972779888999889989999999999999


Q ss_pred             CCCCCEEEECCCEEEEE
Q ss_conf             47863155003227897
Q gi|254780869|r  408 EGIACVPPVRNGKMLRL  424 (559)
Q Consensus       408 ~gv~~i~l~~NGd~i~l  424 (559)
T Consensus       614 ~~i~-~~~P~n~Etirl  629 (630)
T TIGR03675       614 FNIE-TYAPKNLETIRL  629 (630)
T ss_pred             HCCE-EECCCCCCEEEE
T ss_conf             7980-762799886871