HHsearch alignment for GI: 254780869 and conserved domain: TIGR03675
>TIGR03675 arCOG00543 arCOG01782 universal archaeal KH-domain/beta-lactamase-domain protein. This family of proteins is universal in the archaea and consistsof an N-terminal type-1 KH-domain (pfam00013) a central beta-lactamase-domain (pfam00753) with a C-terminal motif associated with RNA metabolism (pfam07521). KH-domains are associated with RNA-binding, so taken together, this protein is a likely metal-dependent RNAase. This family was defined in as arCOG01782.
Probab=100.00 E-value=1.4e-45 Score=348.05 Aligned_cols=385 Identities=23% Similarity=0.340 Sum_probs=256.5
Q ss_pred CCCEEEEEECCCCCCCCCEEEEEEECCCCCCEEEEEECCCCCCCCCCCCEEEECCCHHHHHHHHHCCCEEEEECCCCCCC
Q ss_conf 88639999406868346606999951777864899977676788876750287079579876641246899605430121
Q gi|254780869|r 2 KNEELVFLPLGGVGEIGMNMALYGYGSPSSRKWIMIDCGVSFPKDDLPGVDLVFPDITFIMKERKNLMAIFITHAHEDHY 81 (559)
Q Consensus 2 ~~~~i~~~~lGG~~eiG~N~~~~~~~~~~~~~~iiiD~G~~fp~~~~~gid~iiPd~~~l~~~~~~i~~i~iTH~H~DHi 81 (559)
T Consensus 171 ~~~~vrit~LG~~~eVGRSc~l~~~~~----~~illDcG~~~~~~~~---~-~~P~~d~~e~~~~~IDAVvlTHAHLDH~ 242 (630)
T TIGR03675 171 KDRWVRVTALGGFREVGRSALLLSTPE----SRILLDCGVNVGANGD---N-AYPYLDVPEFQLDELDAVVITHAHLDHS 242 (630)
T ss_pred CCCEEEEEECCCCCCCCCEEEEEECCC----EEEEEECCCCCCCCCC---C-CCCCCCCCCCCCCCCCEEEEECCCCCCC
T ss_conf 897499983467670264589996398----1799988888777775---4-5886567779801185899833532125
Q ss_pred CCHHHHHHH-CCCCEECCHHHHHHHHHHHHHC-------CCCCC----------CCEEEECCCCEEEEC-CEEEEEEECC
Q ss_conf 607888986-2997792999999999999854-------88655----------622551755557763-4899998556
Q gi|254780869|r 82 GALHDLWSF-LHVPVYASPFAIGLLEAKRVYE-------RVSKK----------IPCISFQAGDKVDVG-AFSIESVRVN 142 (559)
Q Consensus 82 Galp~l~~~-~~~pIY~s~~t~~li~~~~~~~-------~~~~~----------~~~~~i~~~~~~~~g-~~~v~~~~~~ 142 (559)
T Consensus 243 G~LP~L~k~Gf~GpIy~T~pT~dL~~llL~D~~ki~~~e~~~plYt~~dv~~~l~~~~~l~y~~~~~i~~~ik~tf~~AG 322 (630)
T TIGR03675 243 GLVPLLFKYGYDGPVYCTPPTRDLMTLLQLDYIDVAQREGKKPPYSSKDVREALKHTITLDYGEVTDIAPDIKLTFYNAG 322 (630)
T ss_pred CCCCHHHHCCCCCCEEECHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHCCEECCCCCEEECCCCEEEEEECCC
T ss_conf 63218876488898886545999999999989999870589999899999999844562489985971798499997688
Q ss_pred CCCCCCCEEEEEECCC--EEEECCCCEECCCCCCCCCCCHHHHHHCCCCCCEEEEECCCCCCCCCCCCC----HHHHHHH
Q ss_conf 7777653567987681--799833402467766542389889986087882999963564578887777----8799999
Q gi|254780869|r 143 HSIPETMALVIRSPVG--NIVHTGDWKLDDDAILGDVTDKDSLCAIGNEGILALMCDSTNAMREGTCIS----EKGIKKN 216 (559)
Q Consensus 143 Hsip~a~~~~I~t~~g--~i~ytGDfk~d~~p~~g~~~d~~~l~~~~~~gv~~Li~esT~~~~~~~~~s----E~~v~~~ 216 (559)
T Consensus 323 H-ILGSAmv~l~i~~g~~~ilfTGD~~~~~~rll~~A~-------~~~~~~D~LI~ESTYG~r~~~h~~r~e~e~~l~~~ 394 (630)
T TIGR03675 323 H-ILGSAIAHLHIGDGLYNIVYTGDFKYEKTRLLDPAV-------NKFPRVETLIMESTYGGRDDYQPSREEAEKELIKV 394 (630)
T ss_pred C-CCEEEEEEEEECCCCEEEEEECCCCCCCCCCCCCCC-------CCCCCCCEEEEECCCCCCCCCCCCHHHHHHHHHHH
T ss_conf 6-104479999976896799995998999776768756-------78777778999743577655689989999999999
Q ss_pred HHHHHHHCCCCEEEEECHHHHHHHHHHHHHHHHH-------CCEEEEECHHHHH-HHHHHHH-CCCCCC----------C
Q ss_conf 9999862798399994147789999999999871-------8869984486999-9998874-287677----------6
Q gi|254780869|r 217 IYDIMKNAKGCVLVTTFSSSVSRIRSIIDIAEQI-------GRKIVLLGSSLKR-VVSVAID-VGIIKK----------D 277 (559)
Q Consensus 217 i~~~~~~~~grViv~~fasni~Ri~~i~~~a~~~-------~R~v~i~Grs~~~-~~~~a~~-~g~l~~----------~ 277 (559)
T Consensus 395 I~et~~r-GGkVLIPaFA--vGRaQEll~iL~e~~~~g~lp~vPIY~Dg--Ma~~at~Iy~~yp~~l~~~lr~~i~~~g~ 469 (630)
T TIGR03675 395 VNETIKR-GGKVLIPVFA--VGRAQEVMLVLEEAMRKGLIPEVPVYLDG--MIWEATAIHTAYPEYLNKELRERIFHEGE 469 (630)
T ss_pred HHHHHHC-CCEEEEEEEC--CCHHHHHHHHHHHHHHCCCCCCCCEEEEC--HHHHHHHHHHHHHHHHCHHHHHHHHHCCC
T ss_conf 9999963-9829998633--65389999999999973999999899802--99999999999698759999999975689
Q ss_pred C-----CC--C-CHHHHCCC--CCCCEEEEEECCC---CCHHHHHHHHCCCCCCCCCCCCCCEEEEEEECCCCHHHHHHH
Q ss_conf 5-----42--2-65662238--8020899996696---326889885202777653026896699996158861778999
Q gi|254780869|r 278 Q-----LF--L-SDESFGLY--PREQLIVIATGSQ---GEPRSALAQLSRGEMRNVKLAEKDTVIFSSRAIPGNEVAIGH 344 (559)
Q Consensus 278 ~-----~~--i-~~~~~~~~--p~~~~~ii~TGsq---ge~~a~l~ria~~~~~~i~l~~~D~vI~ss~~ipGnE~~~~~ 344 (559)
T Consensus 470 nPF~~~~~~~v~~~~~~~~i~~~~~P~IIIAtSGMl~GG~~~~~lk~~~~--------dpkN~IifvGYQaeGTl--GR~ 539 (630)
T TIGR03675 470 NPFLSEIFVRVEGSDERREIIESDEPAIILATSGMLNGGPVVEYLKLLAP--------DPRNSLVFVGYQAEGTL--GRR 539 (630)
T ss_pred CCCCCCCEEEECCHHHHHHHHHCCCCEEEEECCCCCCCCHHHHHHHHHCC--------CCCCEEEEECCCCCCCC--HHH
T ss_conf 95347863992788888988717996699989610175079999998659--------99873999728889984--688
Q ss_pred HHHHH-------------HCCCEEEEECCCCCCEE-CCCCCCHHHHHHHHHHCC--CCEEEEECCCHHHHHHHHHHHH-H
Q ss_conf 99765-------------10311343035666413-157889789999997549--5399970457799999998787-4
Q gi|254780869|r 345 IKNRL-------------VEQGVRVIAEDAECPVH-VSGHPYPNDLKRMYQWIR--PQVLVAIHGEPLHLVAHKELAL-Q 407 (559)
Q Consensus 345 ~~n~l-------------~~~g~~vi~~~~~~~iH-~SGHa~~edl~~li~~ik--Pk~~IPvHGe~rhl~~h~~la~-~ 407 (559)
T Consensus 540 I~~G~kei~i~g~~~~~~i~V~a~V~~------i~gFSaHAD~~~L~~~i~~~~p~P~~V~LVHGE~~~~~~La~~i~~~ 613 (630)
T TIGR03675 540 IQSGWREIPLTDEGKTETIKINMEVET------VEGFSGHSDRRQLMNYVRRMQPKPEKILLNHGEPSKILDLASSIYKK 613 (630)
T ss_pred HHCCCCEEEEECCCCCEEEEEEEEEEE------ECCCCCCCCHHHHHHHHHHHCCCCCEEEEECCCHHHHHHHHHHHHHH
T ss_conf 855885114625877468999879999------57835677989999999972779888999889989999999999999
Q ss_pred CCCCCEEEECCCEEEEE
Q ss_conf 47863155003227897
Q gi|254780869|r 408 EGIACVPPVRNGKMLRL 424 (559)
Q Consensus 408 ~gv~~i~l~~NGd~i~l 424 (559)
T Consensus 614 ~~i~-~~~P~n~Etirl 629 (630)
T TIGR03675 614 FNIE-TYAPKNLETIRL 629 (630)
T ss_pred HCCE-EECCCCCCEEEE
T ss_conf 7980-762799886871