Query gi|254780869|ref|YP_003065282.1| beta-lactamase domain-containing protein [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 559
No_of_seqs 200 out of 1513
Neff 6.9
Searched_HMMs 39220
Date Mon May 30 00:14:32 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780869.hhm -d /home/congqian_1/database/cdd/Cdd.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR00649 MG423 conserved hypo 100.0 0 0 1143.3 49.9 542 6-553 1-593 (593)
2 COG0595 mRNA degradation ribon 100.0 0 0 1088.0 58.9 545 2-553 5-555 (555)
3 TIGR03675 arCOG00543 arCOG0178 100.0 1.4E-45 0 348.1 34.2 385 2-424 171-629 (630)
4 COG1782 Predicted metal-depend 100.0 1E-39 2.5E-44 304.7 29.4 391 2-424 177-636 (637)
5 COG1236 YSH1 Predicted exonucl 100.0 1.2E-36 3.1E-41 282.6 30.7 383 7-424 2-427 (427)
6 KOG1136 consensus 100.0 7.9E-32 2E-36 247.9 23.0 441 5-479 3-497 (501)
7 KOG1137 consensus 100.0 3.9E-29 1E-33 228.5 19.8 391 2-425 10-458 (668)
8 KOG1137 consensus 99.9 1.9E-29 4.8E-34 230.8 1.1 416 4-429 149-599 (668)
9 PRK00055 ribonuclease Z; Revie 99.8 4.1E-19 1E-23 156.5 18.0 214 5-249 3-239 (259)
10 KOG1361 consensus 99.8 7.6E-18 1.9E-22 147.4 17.6 298 67-404 112-421 (481)
11 PRK02113 putative hydrolase; P 99.8 4E-17 1E-21 142.2 18.4 177 30-239 42-229 (252)
12 PRK11244 phnP carbon-phosphoru 99.8 1.2E-16 3.2E-21 138.7 16.2 180 30-238 44-226 (250)
13 TIGR02651 RNase_Z ribonuclease 99.7 1.5E-16 3.7E-21 138.1 16.0 136 5-155 1-169 (327)
14 TIGR03307 PhnP phosphonate met 99.7 3.5E-16 9E-21 135.4 16.7 181 30-239 44-227 (249)
15 PRK02126 ribonuclease Z; Provi 99.7 1.5E-15 3.9E-20 130.8 15.5 122 18-157 15-175 (334)
16 smart00849 Lactamase_B Metallo 99.6 3.3E-14 8.3E-19 121.2 15.6 139 15-170 2-147 (183)
17 KOG1135 consensus 99.6 3.5E-12 8.8E-17 106.7 24.3 219 8-249 4-248 (764)
18 PRK05184 pyrroloquinoline quin 99.6 2.2E-13 5.6E-18 115.3 13.9 123 67-200 80-222 (302)
19 COG1234 ElaC Metal-dependent h 99.5 1.8E-12 4.5E-17 108.8 14.5 216 4-249 2-274 (292)
20 pfam02112 PDEase_II cAMP phosp 99.4 1.7E-11 4.4E-16 101.7 13.1 192 8-203 3-243 (323)
21 COG1235 PhnP Metal-dependent h 99.4 3.4E-11 8.7E-16 99.5 13.4 160 67-238 62-240 (269)
22 TIGR03413 GSH_gloB hydroxyacyl 99.4 1.4E-11 3.6E-16 102.3 11.4 111 31-168 19-129 (248)
23 pfam00753 Lactamase_B Metallo- 99.3 2E-11 5E-16 101.2 11.1 140 15-168 2-146 (148)
24 PRK00685 metal-dependent hydro 99.3 9.8E-10 2.5E-14 89.0 19.0 198 17-256 6-219 (228)
25 PRK10241 hydroxyacylglutathion 99.2 1.5E-10 3.9E-15 94.9 9.5 109 31-168 21-130 (251)
26 COG0426 FpaA Uncharacterized f 99.1 1.6E-09 4E-14 87.5 11.3 305 17-383 34-383 (388)
27 PRK11539 hypothetical protein; 99.1 6.2E-09 1.6E-13 83.3 12.5 133 5-166 500-638 (754)
28 COG0491 GloB Zn-dependent hydr 99.0 6.4E-09 1.6E-13 83.2 12.4 153 3-169 9-171 (252)
29 PRK11921 metallo-beta-lactamas 99.0 2.9E-07 7.4E-12 71.3 20.4 291 66-382 68-385 (395)
30 COG1237 Metal-dependent hydrol 98.9 1.3E-08 3.2E-13 81.1 8.9 76 15-103 19-96 (259)
31 PRK05452 anaerobic nitric oxid 98.9 8.7E-08 2.2E-12 75.0 12.7 94 66-166 70-167 (479)
32 COG2333 ComEC Predicted hydrol 98.9 2E-07 5.1E-12 72.5 14.0 141 34-196 65-213 (293)
33 COG2220 Predicted Zn-dependent 98.8 7.5E-07 1.9E-11 68.3 14.6 134 17-166 12-160 (258)
34 KOG2121 consensus 98.7 1.7E-08 4.4E-13 80.1 5.6 45 66-110 96-147 (746)
35 PRK04286 hypothetical protein; 98.7 2.4E-06 6.1E-11 64.7 16.5 220 7-249 2-267 (294)
36 KOG1138 consensus 98.6 3E-05 7.6E-10 56.8 18.4 295 66-389 95-471 (653)
37 KOG0813 consensus 98.6 6.4E-07 1.6E-11 68.8 9.3 94 64-170 48-144 (265)
38 COG2248 Predicted hydrolase (m 98.5 3.4E-05 8.7E-10 56.4 17.5 230 7-257 2-275 (304)
39 COG5212 PDE1 Low-affinity cAMP 98.5 5.1E-07 1.3E-11 69.5 7.0 102 66-167 111-233 (356)
40 PRK11709 putative L-ascorbate 98.5 1.2E-05 3E-10 59.7 13.8 121 66-204 108-254 (355)
41 pfam07521 RMMBL RNA-metabolisi 98.3 5.7E-07 1.5E-11 69.2 3.2 33 364-396 11-43 (43)
42 TIGR02649 true_RNase_BN ribonu 98.1 1.1E-05 2.9E-10 59.8 7.5 132 13-156 10-152 (304)
43 TIGR02650 RNase_Z_T_toga ribon 97.5 0.0011 2.9E-08 45.4 8.6 107 33-153 19-144 (277)
44 KOG0814 consensus 97.1 0.0063 1.6E-07 40.1 9.2 113 30-167 30-142 (237)
45 TIGR03588 PseC UDP-4-keto-6-de 97.0 0.039 1E-06 34.4 16.3 171 268-467 19-215 (380)
46 COG2015 Alkyl sulfatase and re 96.4 0.017 4.4E-07 37.0 7.3 70 19-100 126-202 (655)
47 PRK11658 UDP-4-amino-4-deoxy-L 96.2 0.12 3.1E-06 30.9 12.7 102 290-411 47-150 (379)
48 KOG4736 consensus 96.0 0.039 9.9E-07 34.4 7.3 107 31-167 103-212 (302)
49 TIGR02108 PQQ_syn_pqqB coenzym 95.8 0.068 1.7E-06 32.7 7.8 142 67-233 80-234 (314)
50 PRK11706 TDP-4-oxo-6-deoxy-D-g 95.6 0.16 4E-06 30.0 9.0 127 264-410 16-147 (375)
51 COG0399 WecE Predicted pyridox 94.8 0.35 8.9E-06 27.5 11.6 212 262-513 18-248 (374)
52 PRK13508 tagatose-6-phosphate 93.5 0.63 1.6E-05 25.7 8.6 66 322-398 124-191 (309)
53 TIGR00361 ComEC_Rec2 DNA inter 93.1 0.51 1.3E-05 26.4 7.0 128 32-167 502-652 (731)
54 COG0329 DapA Dihydrodipicolina 91.3 1.1 2.7E-05 24.1 6.8 179 178-385 22-227 (299)
55 PRK00685 metal-dependent hydro 91.1 0.29 7.3E-06 28.2 3.7 57 368-424 168-228 (228)
56 cd00616 AHBA_syn 3-amino-5-hyd 90.9 1.2 3.2E-05 23.6 14.9 168 269-466 9-197 (352)
57 pfam01041 DegT_DnrJ_EryC1 DegT 89.2 1.7 4.2E-05 22.7 17.7 150 290-466 39-204 (363)
58 PRK13371 4-hydroxy-3-methylbut 88.5 1.8 4.7E-05 22.4 7.8 268 125-424 36-335 (392)
59 COG1167 ARO8 Transcriptional r 87.8 1.8 4.5E-05 22.5 5.7 103 210-314 134-257 (459)
60 PRK00758 GMP synthase subunit 85.6 1.3 3.4E-05 23.4 4.1 76 33-108 1-83 (184)
61 pfam07522 DRMBL DNA repair met 85.3 0.82 2.1E-05 24.9 2.9 29 365-393 76-104 (107)
62 TIGR01368 CPSaseIIsmall carbam 85.1 1.5 3.8E-05 23.0 4.2 24 234-258 95-118 (383)
63 COG1105 FruK Fructose-1-phosph 85.0 2.8 7.1E-05 21.1 8.7 66 198-263 101-173 (310)
64 PRK07324 transaminase; Validat 84.9 1.6 4.1E-05 22.8 4.2 16 237-252 172-187 (373)
65 PRK08636 aspartate aminotransf 84.8 2.9 7.3E-05 21.0 11.9 49 205-253 153-210 (403)
66 TIGR00674 dapA dihydrodipicoli 83.1 3.4 8.5E-05 20.5 7.4 195 178-408 16-239 (288)
67 cd00952 CHBPH_aldolase Trans-o 82.6 3.5 8.9E-05 20.4 6.2 77 178-256 26-108 (309)
68 cd00408 DHDPS-like Dihydrodipi 82.6 3.5 8.9E-05 20.4 6.2 77 178-256 15-97 (281)
69 PRK05749 3-deoxy-D-manno-octul 82.4 3.5 9E-05 20.3 8.3 14 391-404 307-320 (423)
70 PRK07777 aminotransferase; Val 82.1 3.5 9E-05 20.3 5.1 39 217-256 152-197 (386)
71 cd00953 KDG_aldolase KDG (2-ke 81.4 3.8 9.8E-05 20.1 6.1 76 178-256 17-96 (279)
72 cd00950 DHDPS Dihydrodipicolin 80.8 4 0.0001 19.9 6.0 77 178-256 18-100 (284)
73 TIGR02546 III_secr_ATP type II 80.8 4 0.0001 19.9 6.4 138 152-307 147-316 (430)
74 KOG3592 consensus 80.7 2.3 5.8E-05 21.7 3.7 33 58-90 72-104 (934)
75 PRK06207 aspartate aminotransf 80.4 4.1 0.0001 19.9 5.5 39 216-255 171-216 (406)
76 TIGR02198 rfaE_dom_I rfaE bifu 80.0 4.2 0.00011 19.8 4.8 54 210-264 132-190 (321)
77 PRK12564 carbamoyl phosphate s 79.6 4 0.0001 19.9 4.7 41 368-411 220-262 (355)
78 pfam00701 DHDPS Dihydrodipicol 79.5 4.4 0.00011 19.6 5.9 77 178-256 19-101 (289)
79 PRK03620 5-dehydro-4-deoxygluc 78.2 4.8 0.00012 19.4 6.0 75 178-255 19-99 (296)
80 PRK09331 Sep-tRNA:Cys-tRNA syn 78.2 4.8 0.00012 19.4 8.4 56 203-258 133-194 (386)
81 PRK08175 aminotransferase; Val 78.1 4.8 0.00012 19.4 11.0 41 215-255 152-201 (395)
82 CHL00197 carA carbamoyl-phosph 77.9 4.9 0.00012 19.3 4.8 42 367-411 242-286 (383)
83 PRK03170 dihydrodipicolinate s 77.0 5.1 0.00013 19.2 6.2 77 178-256 19-101 (292)
84 PRK09082 putative aminotransfe 74.5 6 0.00015 18.7 4.8 20 237-256 182-201 (386)
85 PRK10966 exonuclease subunit S 74.1 6.1 0.00015 18.6 5.1 91 159-251 2-101 (402)
86 TIGR03249 KdgD 5-dehydro-4-deo 73.2 6.4 0.00016 18.5 6.0 75 178-255 23-103 (296)
87 cd00954 NAL N-Acetylneuraminic 73.2 6.4 0.00016 18.5 6.4 67 188-256 33-101 (288)
88 pfam04179 Init_tRNA_PT Initiat 72.6 3.9 1E-04 20.0 3.1 43 151-202 54-96 (445)
89 KOG1546 consensus 72.0 4.2 0.00011 19.8 3.1 24 526-549 326-349 (362)
90 cd00951 KDGDH 5-dehydro-4-deox 72.0 6.8 0.00017 18.3 6.3 76 178-256 18-99 (289)
91 cd02001 TPP_ComE_PpyrDC Thiami 70.4 5.1 0.00013 19.2 3.2 104 140-257 43-151 (157)
92 PRK05620 acyl-CoA synthetase; 70.3 7.3 0.00019 18.0 7.6 52 416-472 432-484 (571)
93 TIGR01977 am_tr_V_EF2568 cyste 70.3 7.4 0.00019 18.0 7.2 102 150-276 81-189 (384)
94 PRK04147 N-acetylneuraminate l 69.4 7.7 0.0002 17.9 6.1 68 187-256 35-104 (294)
95 cd01423 MGS_CPS_I_III Methylgl 69.1 5.7 0.00015 18.8 3.2 39 69-107 1-41 (116)
96 COG0770 MurF UDP-N-acetylmuram 68.4 8 0.0002 17.8 8.9 18 369-386 368-385 (451)
97 PRK10294 6-phosphofructokinase 68.4 8 0.0002 17.8 8.0 56 203-258 108-167 (309)
98 TIGR03540 DapC_direct LL-diami 68.3 8 0.0002 17.8 9.0 30 226-255 165-201 (383)
99 KOG0081 consensus 68.1 3.2 8.3E-05 20.6 1.8 39 6-45 10-48 (219)
100 TIGR02379 ECA_wecE TDP-4-keto- 67.9 8.2 0.00021 17.7 4.7 14 177-190 132-145 (376)
101 pfam06616 BsuBI_PstI_RE BsuBI/ 67.4 8.4 0.00021 17.6 7.4 92 133-234 153-266 (306)
102 cd01742 GATase1_GMP_Synthase T 66.8 8.6 0.00022 17.5 4.8 75 34-108 1-86 (181)
103 PRK12838 carbamoyl phosphate s 66.0 8.9 0.00023 17.4 4.3 20 389-411 238-257 (356)
104 PRK07535 methyltetrahydrofolat 65.3 9.2 0.00023 17.4 6.5 43 215-257 80-122 (268)
105 KOG3798 consensus 64.2 9.6 0.00024 17.2 7.1 123 67-204 132-270 (343)
106 TIGR02204 MsbA_rel ABC transpo 64.1 6.7 0.00017 18.3 2.8 66 127-201 336-404 (576)
107 PRK09148 aminotransferase; Val 63.9 9.7 0.00025 17.2 10.8 26 227-252 168-200 (406)
108 TIGR02093 P_ylase glycogen/sta 63.9 9.7 0.00025 17.2 4.4 132 180-351 474-616 (822)
109 TIGR00216 ispH_lytB 4-hydroxy- 63.3 9.9 0.00025 17.1 7.1 42 215-259 97-141 (354)
110 PRK13391 acyl-CoA synthetase; 63.1 10 0.00026 17.1 7.4 50 417-471 385-435 (514)
111 PRK05234 mgsA methylglyoxal sy 62.5 3.2 8.2E-05 20.6 0.9 30 75-104 90-119 (146)
112 PRK10637 cysG siroheme synthas 61.6 11 0.00027 16.9 5.0 138 280-421 250-413 (457)
113 PRK05957 aspartate aminotransf 61.4 11 0.00027 16.9 7.9 19 237-255 179-197 (389)
114 PRK05942 aspartate aminotransf 61.3 11 0.00027 16.9 10.0 29 226-254 171-206 (394)
115 PRK07681 aspartate aminotransf 61.1 11 0.00028 16.8 6.3 29 225-253 166-201 (399)
116 PRK08068 transaminase; Reviewe 60.1 11 0.00029 16.7 8.7 19 237-255 186-204 (389)
117 PRK08069 consensus 60.0 11 0.00029 16.7 9.0 20 237-256 182-201 (390)
118 PRK05293 glgC glucose-1-phosph 59.8 11 0.00029 16.7 3.4 28 134-161 147-174 (381)
119 PRK05677 acyl-CoA synthetase; 59.5 12 0.00029 16.6 8.6 60 416-480 435-498 (562)
120 cd00532 MGS-like MGS-like doma 59.3 11 0.00029 16.7 3.3 38 70-107 1-40 (112)
121 PRK07568 aspartate aminotransf 59.3 12 0.0003 16.6 9.6 18 237-254 181-198 (396)
122 PRK05826 pyruvate kinase; Prov 59.1 12 0.0003 16.6 6.8 48 207-256 170-218 (461)
123 PRK12414 putative aminotransfe 58.7 12 0.0003 16.5 5.3 21 237-257 181-201 (384)
124 TIGR00519 asnASE_I L-asparagin 57.5 12 0.00031 16.5 3.2 115 413-535 216-342 (347)
125 TIGR01481 ccpA catabolite cont 57.0 13 0.00032 16.4 8.0 156 212-395 126-295 (332)
126 TIGR00631 uvrb excinuclease AB 56.9 13 0.00032 16.3 3.7 74 455-538 490-574 (667)
127 cd01422 MGS Methylglyoxal synt 56.8 4.3 0.00011 19.7 0.8 15 368-382 82-96 (115)
128 PRK01045 ispH 4-hydroxy-3-meth 56.4 13 0.00033 16.3 9.1 25 236-260 98-122 (304)
129 PRK09275 aspartate aminotransf 56.1 13 0.00033 16.3 5.5 111 173-293 228-346 (531)
130 PRK04457 spermidine synthase; 55.5 13 0.00034 16.2 7.3 64 187-251 133-196 (262)
131 PRK07550 hypothetical protein; 55.3 13 0.00034 16.2 5.1 20 237-256 183-202 (387)
132 COG1519 KdtA 3-deoxy-D-manno-o 54.1 14 0.00036 16.0 8.7 47 364-412 234-287 (419)
133 cd03371 TPP_PpyrDC Thiamine py 54.1 12 0.0003 16.6 2.6 16 460-475 149-164 (188)
134 cd05006 SIS_GmhA Phosphoheptos 53.9 14 0.00036 16.0 10.0 140 234-405 16-168 (177)
135 PRK02947 hypothetical protein; 53.1 14 0.00037 15.9 8.0 41 234-274 24-66 (247)
136 cd05013 SIS_RpiR RpiR-like pro 53.0 14 0.00037 15.9 7.2 36 321-358 57-92 (139)
137 TIGR02297 HpaA 4-hydroxyphenyl 52.9 12 0.0003 16.6 2.4 30 131-160 67-100 (292)
138 PRK09513 fruK 1-phosphofructok 52.8 15 0.00037 15.9 8.5 15 369-383 292-306 (312)
139 COG0370 FeoB Fe2+ transport sy 52.2 15 0.00038 15.8 8.0 67 198-273 59-126 (653)
140 COG4252 Predicted transmembran 52.1 14 0.00035 16.0 2.7 23 463-485 264-286 (400)
141 TIGR01398 FlhA flagellar biosy 51.9 7.9 0.0002 17.8 1.5 23 367-389 673-695 (713)
142 PRK08362 consensus 51.5 15 0.00039 15.8 5.7 20 237-256 179-198 (389)
143 TIGR01931 cysJ sulfite reducta 51.5 15 0.00039 15.8 5.0 33 444-478 443-475 (628)
144 PRK09265 aminotransferase AlaT 51.2 15 0.00039 15.7 4.7 16 237-252 187-202 (404)
145 PRK12691 flgG flagellar basal 51.0 12 0.00031 16.5 2.3 40 132-171 84-125 (262)
146 PRK06242 flavodoxin; Provision 51.0 16 0.0004 15.7 6.3 92 288-383 40-143 (150)
147 PRK07868 acyl-CoA synthetase; 50.4 16 0.0004 15.6 7.0 111 243-358 410-526 (990)
148 TIGR01469 cobA_cysG_Cterm urop 50.3 11 0.00029 16.7 2.1 136 280-421 35-203 (242)
149 TIGR00763 lon ATP-dependent pr 49.7 16 0.00041 15.6 3.4 104 222-337 445-585 (941)
150 PRK07168 bifunctional uroporph 49.6 16 0.00041 15.6 6.5 118 119-259 82-233 (474)
151 TIGR02203 MsbA_lipidA lipid A 49.3 16 0.00042 15.5 3.0 28 127-154 359-386 (603)
152 TIGR02153 gatD_arch glutamyl-t 49.2 16 0.0004 15.7 2.6 107 369-482 233-354 (413)
153 TIGR03335 F390_ftsA coenzyme F 49.1 17 0.00042 15.5 7.8 10 416-425 300-309 (445)
154 PRK07543 consensus 49.1 17 0.00042 15.5 8.9 21 237-257 183-203 (400)
155 PRK13580 serine hydroxymethylt 48.7 8.1 0.00021 17.7 1.1 87 459-548 390-490 (493)
156 PRK07366 succinyldiaminopimela 48.6 17 0.00043 15.4 9.2 28 225-252 165-199 (388)
157 COG0007 CysG Uroporphyrinogen- 47.7 17 0.00044 15.4 5.1 31 301-331 66-96 (244)
158 PRK07309 aromatic amino acid a 47.7 17 0.00044 15.3 8.3 37 217-253 156-201 (390)
159 PRK09461 ansA cytoplasmic aspa 47.5 17 0.00045 15.3 11.1 37 61-97 75-114 (335)
160 PRK08008 caiC putative crotono 47.5 17 0.00045 15.3 10.1 52 416-472 400-452 (517)
161 TIGR01143 murF UDP-N-acetylmur 47.3 18 0.00045 15.3 11.2 206 12-259 121-361 (462)
162 COG0112 GlyA Glycine/serine hy 47.3 11 0.00029 16.7 1.7 48 210-257 151-200 (413)
163 PRK00950 histidinol-phosphate 47.2 18 0.00045 15.3 4.6 14 495-508 355-368 (369)
164 PRK13034 serine hydroxymethylt 47.0 18 0.00045 15.3 2.9 73 458-539 337-417 (422)
165 PRK06450 threonine synthase; V 46.9 18 0.00046 15.3 5.1 75 185-273 89-163 (336)
166 PRK06849 hypothetical protein; 46.5 18 0.00046 15.2 7.9 105 181-287 19-144 (387)
167 KOG4180 consensus 46.4 9.4 0.00024 17.3 1.1 53 138-195 96-149 (395)
168 COG2266 GTP:adenosylcobinamide 46.3 18 0.00046 15.2 6.5 81 325-420 42-126 (177)
169 PRK12817 flgG flagellar basal 46.3 18 0.00046 15.2 2.8 43 130-172 78-122 (261)
170 PRK12694 flgG flagellar basal 46.2 17 0.00044 15.3 2.5 42 131-172 83-126 (260)
171 PRK06108 aspartate aminotransf 46.0 18 0.00047 15.2 6.9 19 237-255 177-195 (382)
172 pfam02875 Mur_ligase_C Mur lig 45.8 19 0.00047 15.1 2.8 38 221-258 8-47 (87)
173 COG0696 GpmI Phosphoglyceromut 45.6 19 0.00047 15.1 9.6 255 139-427 62-351 (509)
174 TIGR01352 tonB_Cterm TonB fami 45.6 19 0.00048 15.1 5.4 34 457-490 6-39 (81)
175 TIGR02199 rfaE_dom_II rfaE bif 45.0 19 0.00048 15.1 7.7 98 243-395 2-106 (144)
176 PRK07683 aminotransferase A; V 44.8 19 0.00049 15.0 5.5 47 204-255 145-198 (387)
177 PRK12583 acyl-CoA synthetase; 44.6 19 0.00049 15.0 7.4 52 416-472 430-482 (558)
178 TIGR03506 FlgEFG_subfam fagell 44.6 19 0.00049 15.0 2.6 41 132-172 69-111 (231)
179 PRK09276 aspartate aminotransf 44.6 19 0.00049 15.0 12.1 32 225-256 166-204 (385)
180 TIGR01238 D1pyr5carbox3 delta- 44.0 18 0.00046 15.3 2.3 216 149-425 249-497 (525)
181 COG2028 Uncharacterized conser 43.8 11 0.00028 16.7 1.2 34 374-407 111-144 (145)
182 PRK06225 aspartate aminotransf 43.8 20 0.0005 14.9 5.0 19 237-255 171-189 (375)
183 PRK06836 aspartate aminotransf 43.8 20 0.0005 14.9 4.7 14 36-49 36-49 (396)
184 TIGR00137 gid gid protein; Int 43.7 19 0.00048 15.1 2.4 277 185-469 18-351 (444)
185 TIGR00454 TIGR00454 conserved 43.6 20 0.00051 14.9 5.0 94 297-429 5-116 (204)
186 TIGR03026 NDP-sugDHase nucleot 43.5 20 0.00051 14.9 10.3 20 342-361 335-354 (411)
187 PRK12693 flgG flagellar basal 43.4 20 0.00051 14.9 2.5 40 132-171 84-125 (261)
188 TIGR01072 murA UDP-N-acetylglu 43.4 18 0.00047 15.2 2.2 20 146-165 133-152 (443)
189 TIGR02517 type_II_gspD general 42.8 20 0.00052 14.8 3.1 41 209-249 110-159 (697)
190 KOG0370 consensus 42.4 21 0.00053 14.8 3.0 78 26-106 167-254 (1435)
191 COG1619 LdcA Uncharacterized p 42.4 21 0.00053 14.8 5.6 14 340-353 220-233 (313)
192 cd00946 FBP_aldolase_IIA Class 41.9 21 0.00054 14.7 4.0 43 215-257 2-46 (345)
193 TIGR02877 spore_yhbH sporulati 41.9 21 0.00054 14.7 2.5 102 203-312 106-237 (392)
194 KOG2004 consensus 41.8 21 0.00054 14.7 6.1 36 67-111 68-104 (906)
195 cd01541 PBP1_AraR Ligand-bindi 41.6 21 0.00054 14.7 4.5 68 186-261 25-93 (273)
196 TIGR01302 IMP_dehydrog inosine 40.7 22 0.00056 14.6 6.4 224 11-258 57-349 (476)
197 cd02517 CMP-KDO-Synthetase CMP 40.7 22 0.00056 14.6 5.9 121 212-340 28-165 (239)
198 PRK12816 flgG flagellar basal 40.7 22 0.00056 14.6 2.4 43 130-172 82-126 (264)
199 PRK08361 aspartate aminotransf 40.5 22 0.00056 14.6 3.8 30 226-255 166-202 (390)
200 cd01494 AAT_I Aspartate aminot 40.3 22 0.00057 14.6 7.4 81 322-410 38-123 (170)
201 pfam04033 DUF365 Domain of unk 40.2 8.2 0.00021 17.7 0.0 22 374-395 73-94 (97)
202 PRK10773 murF UDP-N-acetylmura 40.0 23 0.00057 14.5 10.8 46 208-258 193-240 (452)
203 KOG0053 consensus 39.9 23 0.00057 14.5 8.4 47 208-258 77-123 (409)
204 COG4786 FlgG Flagellar basal b 39.5 23 0.00058 14.5 2.4 43 129-171 81-125 (265)
205 COG1086 Predicted nucleoside-d 39.4 23 0.00058 14.5 15.3 27 444-470 417-443 (588)
206 cd06811 PLPDE_III_yhfX_like Ty 39.3 23 0.00059 14.5 3.2 18 236-253 210-227 (382)
207 COG2870 RfaE ADP-heptose synth 39.2 23 0.00059 14.5 5.1 56 210-266 130-188 (467)
208 PRK09356 imidazolonepropionase 38.6 24 0.0006 14.4 3.0 39 237-275 220-260 (401)
209 PRK05450 3-deoxy-manno-octulos 38.5 24 0.0006 14.4 8.8 149 213-385 30-199 (248)
210 COG0622 Predicted phosphoester 38.5 22 0.00057 14.5 2.1 23 388-410 84-110 (172)
211 TIGR03599 YloV DAK2 domain fus 38.4 24 0.0006 14.4 10.6 38 348-390 329-366 (530)
212 TIGR01317 GOGAT_sm_gam glutama 38.4 24 0.00061 14.4 4.8 188 37-267 46-279 (517)
213 PRK12692 flgG flagellar basal 38.1 24 0.00061 14.3 2.3 41 132-172 84-126 (262)
214 pfam11495 Regulator_TrmB Archa 37.9 24 0.00062 14.3 6.6 50 208-257 6-55 (228)
215 PTZ00247 adenosine kinase; Pro 37.7 24 0.00062 14.3 4.9 13 386-398 216-228 (345)
216 cd05005 SIS_PHI Hexulose-6-pho 37.7 24 0.00062 14.3 8.3 36 321-358 72-107 (179)
217 TIGR02295 HpaD 3,4-dihydroxyph 37.4 25 0.00063 14.3 2.6 33 135-167 241-275 (312)
218 PRK04813 D-alanine--D-alanyl c 37.3 25 0.00063 14.3 7.5 51 416-471 378-428 (503)
219 TIGR03127 RuMP_HxlB 6-phospho 37.2 25 0.00063 14.2 7.7 35 322-358 70-104 (179)
220 cd01424 MGS_CPS_II Methylglyox 36.6 25 0.00064 14.2 2.8 39 70-108 2-42 (110)
221 COG0809 QueA S-adenosylmethion 36.3 25 0.00065 14.2 5.7 87 171-275 180-273 (348)
222 TIGR00520 asnASE_II L-asparagi 36.1 18 0.00045 15.3 1.2 170 66-261 104-306 (360)
223 PRK07778 consensus 35.6 26 0.00067 14.1 7.0 17 237-253 181-197 (386)
224 TIGR02684 dnstrm_HI1420 probab 35.5 13 0.00034 16.1 0.6 59 206-272 10-70 (91)
225 PRK12643 flgF flagellar basal 35.0 27 0.00068 14.0 2.6 44 130-173 67-112 (209)
226 pfam06516 NUP Purine nucleosid 35.0 27 0.00068 14.0 3.4 59 188-247 186-244 (315)
227 PRK11148 cyclic 3',5'-adenosin 34.9 27 0.00068 14.0 3.4 83 5-101 3-94 (275)
228 cd06397 PB1_UP1 Uncharacterize 34.8 27 0.00069 14.0 6.0 58 325-386 9-70 (82)
229 pfam03949 Malic_M Malic enzyme 34.5 27 0.00069 14.0 5.1 75 216-307 97-174 (255)
230 COG0436 Aspartate/tyrosine/aro 34.4 27 0.0007 13.9 6.5 14 36-49 30-43 (393)
231 COG0505 CarA Carbamoylphosphat 34.1 28 0.0007 13.9 6.4 42 232-274 86-127 (368)
232 PRK06056 consensus 34.1 28 0.0007 13.9 10.1 19 237-255 187-205 (402)
233 COG1759 5-formaminoimidazole-4 34.0 28 0.0007 13.9 4.5 39 62-100 79-117 (361)
234 PRK09197 fructose-bisphosphate 34.0 28 0.0007 13.9 4.3 44 214-257 6-51 (349)
235 PRK07998 gatY putative fructos 33.8 28 0.00071 13.9 3.7 42 216-257 5-48 (283)
236 PTZ00237 acetyl-CoA synthetase 33.8 28 0.00071 13.9 5.1 52 416-472 494-546 (649)
237 pfam06415 iPGM_N BPG-independe 33.7 28 0.00071 13.9 2.9 11 321-331 165-175 (223)
238 PRK08912 hypothetical protein; 33.7 28 0.00071 13.9 7.9 16 237-252 178-193 (387)
239 COG2845 Uncharacterized protei 33.7 28 0.00071 13.9 3.9 97 152-259 110-234 (354)
240 PRK05852 acyl-CoA synthetase; 33.4 28 0.00072 13.8 7.5 52 416-472 406-458 (530)
241 pfam04309 G3P_antiterm Glycero 33.2 28 0.00072 13.8 5.9 41 215-257 9-49 (174)
242 COG1880 CdhB CO dehydrogenase/ 33.2 28 0.00073 13.8 5.4 61 214-274 25-86 (170)
243 PRK12640 flgF flagellar basal 33.0 29 0.00073 13.8 2.7 42 130-171 67-110 (246)
244 PRK05764 aspartate aminotransf 32.9 29 0.00073 13.8 7.8 20 237-256 183-202 (389)
245 TIGR03471 HpnJ hopanoid biosyn 32.7 29 0.00074 13.8 13.3 240 149-394 146-445 (472)
246 PRK10852 thiosulfate transport 32.6 26 0.00066 14.1 1.6 46 327-379 121-166 (338)
247 PRK05857 acyl-CoA synthetase; 32.4 29 0.00075 13.7 8.0 52 416-472 396-448 (532)
248 cd02012 TPP_TK Thiamine pyroph 32.3 29 0.00075 13.7 2.4 118 134-259 100-225 (255)
249 PRK01424 S-adenosylmethionine: 32.2 30 0.00075 13.7 4.7 32 242-273 260-291 (366)
250 cd05014 SIS_Kpsf KpsF-like pro 32.1 30 0.00076 13.7 3.6 36 321-358 44-79 (128)
251 PRK08443 consensus 32.0 30 0.00076 13.7 9.6 19 237-255 181-199 (388)
252 PRK08610 fructose-bisphosphate 31.9 30 0.00076 13.7 3.9 156 217-396 6-185 (286)
253 TIGR01284 alt_nitrog_alph nitr 31.8 30 0.00076 13.6 3.1 71 328-421 364-438 (468)
254 TIGR02082 metH methionine synt 31.7 30 0.00076 13.6 2.7 336 165-538 393-842 (1265)
255 PTZ00094 serine hydroxymethylt 31.6 30 0.00077 13.6 3.4 49 459-509 349-404 (450)
256 TIGR00628 ung uracil-DNA glyco 31.4 30 0.00077 13.6 3.0 80 143-230 67-164 (225)
257 pfam02401 LYTB LytB protein. T 31.4 30 0.00077 13.6 8.6 25 236-260 96-120 (280)
258 PRK08185 hypothetical protein; 31.2 31 0.00078 13.6 3.2 40 218-257 2-43 (283)
259 cd00740 MeTr MeTr subgroup of 31.1 31 0.00078 13.6 7.1 43 215-257 81-125 (252)
260 COG1803 MgsA Methylglyoxal syn 30.9 31 0.00079 13.6 2.3 14 91-104 105-118 (142)
261 PRK00039 ruvC Holliday junctio 30.7 31 0.00079 13.5 3.8 38 346-383 90-130 (169)
262 TIGR01753 flav_short flavodoxi 30.4 31 0.0008 13.5 3.0 55 326-384 84-143 (146)
263 pfam07541 EIF_2_alpha Eukaryot 30.1 32 0.00081 13.5 5.5 41 211-251 39-88 (113)
264 PRK00726 murG N-acetylglucosam 30.0 32 0.00081 13.4 9.3 43 370-412 261-304 (359)
265 COG0810 TonB Periplasmic prote 30.0 32 0.00081 13.4 3.3 35 455-489 170-204 (244)
266 PRK10752 sulfate transporter s 29.6 29 0.00074 13.7 1.5 46 327-379 115-160 (329)
267 TIGR01125 TIGR01125 MiaB-like 29.5 11 0.00029 16.7 -0.7 133 206-351 191-352 (475)
268 PRK06806 fructose-bisphosphate 29.5 33 0.00083 13.4 3.7 42 216-257 5-48 (281)
269 TIGR00090 TIGR00090 iojap homo 29.3 33 0.00084 13.4 1.8 20 281-302 50-69 (155)
270 COG3946 VirJ Type IV secretory 29.1 33 0.00084 13.3 6.8 35 185-221 282-316 (456)
271 PRK10727 DNA-binding transcrip 29.1 33 0.00084 13.3 8.7 32 96-127 27-58 (342)
272 cd04795 SIS SIS domain. SIS (S 28.9 33 0.00085 13.3 3.6 36 321-358 44-79 (87)
273 TIGR02634 xylF D-xylose ABC tr 28.7 34 0.00086 13.3 8.4 194 208-411 38-257 (307)
274 PRK06507 consensus 28.7 34 0.00086 13.3 13.2 48 205-257 149-203 (400)
275 PRK12737 gatY tagatose-bisphos 28.6 34 0.00086 13.3 3.7 42 216-257 5-48 (284)
276 COG0761 lytB 4-Hydroxy-3-methy 28.5 34 0.00086 13.3 4.7 22 237-258 16-38 (294)
277 cd04603 CBS_pair_KefB_assoc Th 28.4 34 0.00086 13.3 4.5 84 398-482 12-102 (111)
278 COG4822 CbiK Cobalamin biosynt 28.1 34 0.00087 13.2 6.0 113 285-416 47-173 (265)
279 TIGR01418 PEP_synth phosphoeno 28.1 34 0.00088 13.2 4.2 336 134-534 186-603 (877)
280 PRK11538 hypothetical protein; 27.9 32 0.00082 13.4 1.5 15 292-306 34-48 (105)
281 cd02193 PurL Formylglycinamide 27.7 35 0.00089 13.2 3.7 22 80-101 65-86 (272)
282 pfam00155 Aminotran_1_2 Aminot 27.5 35 0.00089 13.2 5.8 20 237-256 155-174 (351)
283 KOG2862 consensus 27.4 35 0.0009 13.1 7.0 90 135-243 70-161 (385)
284 PRK07367 consensus 27.4 35 0.0009 13.1 9.8 20 237-256 180-199 (385)
285 pfam01116 F_bP_aldolase Fructo 27.3 35 0.0009 13.1 3.8 41 217-257 4-46 (283)
286 pfam06849 DUF1246 Protein of u 27.0 36 0.00091 13.1 3.4 37 65-101 62-98 (124)
287 KOG1359 consensus 27.0 36 0.00091 13.1 3.1 33 455-487 358-392 (417)
288 TIGR00619 sbcd nuclease SbcCD, 26.8 36 0.00092 13.1 6.4 98 159-258 2-117 (275)
289 PRK00197 proA gamma-glutamyl p 26.8 36 0.00092 13.1 2.6 72 325-401 259-331 (416)
290 PRK08363 alanine aminotransfer 26.6 36 0.00093 13.0 9.3 47 204-255 150-203 (398)
291 PRK06801 hypothetical protein; 26.6 36 0.00093 13.0 3.6 156 216-395 5-184 (286)
292 TIGR02764 spore_ybaN_pdaB poly 26.6 36 0.00093 13.0 7.2 101 235-358 85-193 (198)
293 PRK07709 fructose-bisphosphate 26.6 36 0.00093 13.0 3.8 42 216-257 5-48 (285)
294 pfam00356 LacI Bacterial regul 26.4 27 0.00069 14.0 0.8 15 261-275 31-45 (46)
295 COG4882 Predicted aminopeptida 26.3 37 0.00094 13.0 2.6 46 220-265 84-130 (486)
296 pfam01488 Shikimate_DH Shikima 26.1 37 0.00094 13.0 7.8 81 218-304 4-88 (134)
297 PRK09195 gatY tagatose-bisphos 26.1 37 0.00095 13.0 3.8 42 216-257 5-48 (284)
298 pfam08885 GSCFA GSCFA family. 25.7 24 0.00061 14.4 0.4 22 231-252 145-166 (251)
299 PRK05298 excinuclease ABC subu 25.7 38 0.00096 12.9 4.2 80 205-298 249-339 (657)
300 pfam03544 TonB Gram-negative b 25.5 38 0.00097 12.9 3.0 27 459-486 10-36 (79)
301 TIGR02545 ATP_syn_fliI flagell 25.5 38 0.00097 12.9 4.8 106 152-275 152-271 (439)
302 TIGR00075 hypD hydrogenase exp 25.5 38 0.00097 12.9 1.6 23 237-259 129-152 (384)
303 TIGR00031 UDP-GALP_mutase UDP- 25.5 35 0.00089 13.2 1.3 22 15-40 35-57 (390)
304 cd04183 GT2_BcE_like GT2_BcbE_ 25.4 38 0.00097 12.9 3.5 45 338-387 28-72 (231)
305 TIGR01283 nifE nitrogenase MoF 24.9 39 0.00099 12.8 4.7 52 325-389 361-412 (470)
306 COG2828 Uncharacterized protei 24.8 39 0.001 12.8 4.7 42 134-177 119-160 (378)
307 pfam06057 VirJ Bacterial virul 24.8 39 0.001 12.8 5.0 67 158-234 4-76 (192)
308 PRK08960 hypothetical protein; 24.7 39 0.001 12.8 12.2 20 237-256 184-203 (387)
309 TIGR01553 formate-DH-alph form 24.7 39 0.001 12.8 3.5 59 378-451 935-997 (1043)
310 cd00453 FTBP_aldolase_II Fruct 24.7 39 0.001 12.8 3.1 40 218-257 2-43 (340)
311 PRK00011 glyA serine hydroxyme 24.4 40 0.001 12.8 2.5 69 458-538 330-406 (415)
312 pfam10740 DUF2529 Protein of u 24.4 40 0.001 12.8 2.9 35 321-357 78-112 (172)
313 PRK12857 putative aldolase; Re 24.2 40 0.001 12.7 3.7 159 216-395 5-183 (284)
314 KOG0688 consensus 24.1 40 0.001 12.7 3.8 129 154-301 83-225 (431)
315 TIGR01369 CPSaseII_lrg carbamo 24.1 40 0.001 12.7 4.7 94 396-489 823-935 (1089)
316 PRK05166 histidinol-phosphate 24.0 40 0.001 12.7 7.4 60 211-272 76-135 (374)
317 TIGR01214 rmlD dTDP-4-dehydror 23.7 41 0.001 12.7 4.3 32 209-240 173-211 (317)
318 pfam10137 TIR-like Predicted n 23.5 41 0.0011 12.6 2.1 23 71-93 2-25 (124)
319 TIGR01111 mtrA tetrahydrometha 23.4 41 0.0011 12.6 1.5 31 223-258 22-53 (246)
320 PRK00409 recombination and DNA 23.3 42 0.0011 12.6 1.5 26 230-257 386-411 (780)
321 PRK13368 3-deoxy-manno-octulos 23.1 42 0.0011 12.6 6.8 70 213-288 30-109 (238)
322 TIGR02256 ICE_VC0181 conserved 23.1 42 0.0011 12.6 2.7 44 154-197 68-120 (143)
323 cd01744 GATase1_CPSase Small c 23.0 42 0.0011 12.6 4.0 75 34-108 1-85 (178)
324 TIGR01607 PST-A Plasmodium sub 22.9 35 0.00089 13.2 0.8 28 320-350 351-378 (379)
325 pfam08400 phage_tail_N Prophag 22.7 43 0.0011 12.5 2.0 39 132-176 47-85 (134)
326 COG0460 ThrA Homoserine dehydr 22.7 43 0.0011 12.5 7.3 62 189-258 77-139 (333)
327 PRK07771 consensus 22.6 43 0.0011 12.5 10.2 52 416-472 411-463 (541)
328 pfam08543 Phos_pyr_kin Phospho 22.5 43 0.0011 12.5 6.5 88 169-256 1-91 (246)
329 cd01078 NAD_bind_H4MPT_DH NADP 22.4 43 0.0011 12.5 3.9 79 224-304 26-109 (194)
330 PRK12738 kbaY tagatose-bisphos 22.3 43 0.0011 12.5 3.6 158 217-395 6-183 (286)
331 KOG0385 consensus 22.3 43 0.0011 12.5 3.6 32 319-353 553-585 (971)
332 PRK06018 putative acyl-CoA syn 21.9 44 0.0011 12.4 7.9 52 416-472 412-464 (540)
333 COG4565 CitB Response regulato 21.9 44 0.0011 12.4 2.8 21 224-244 73-93 (224)
334 PRK09196 fructose-1,6-bisphosp 21.8 44 0.0011 12.4 3.9 42 216-257 5-48 (347)
335 PRK06460 hypothetical protein; 21.8 44 0.0011 12.4 9.6 14 495-508 359-372 (375)
336 COG4765 Uncharacterized protei 21.7 45 0.0011 12.4 4.2 54 93-148 49-102 (164)
337 cd03283 ABC_MutS-like MutS-lik 21.5 45 0.0011 12.4 2.6 29 230-258 84-112 (199)
338 PRK04928 consensus 21.5 45 0.0011 12.4 2.3 29 134-162 145-173 (405)
339 pfam04303 PrpF PrpF protein. P 21.2 46 0.0012 12.3 1.4 45 135-181 118-162 (371)
340 COG1634 Uncharacterized Rossma 21.1 29 0.00073 13.8 0.1 25 374-398 104-128 (232)
341 pfam10692 DUF2498 Protein of u 21.1 46 0.0012 12.3 2.6 34 145-178 27-60 (82)
342 PRK06901 aspartate-semialdehyd 21.0 46 0.0012 12.3 3.0 31 161-191 94-125 (323)
343 TIGR01701 Fdhalpha-like oxidor 21.0 46 0.0012 12.3 3.3 22 237-258 383-404 (824)
344 KOG1424 consensus 20.8 16 0.00041 15.6 -1.2 25 227-251 152-176 (562)
345 pfam09269 DUF1967 Domain of un 20.8 47 0.0012 12.3 2.5 41 98-138 28-68 (68)
346 PRK07315 fructose-bisphosphate 20.7 47 0.0012 12.3 3.8 41 217-257 6-48 (293)
347 pfam07485 DUF1529 Domain of Un 20.5 47 0.0012 12.2 4.8 50 324-381 60-117 (123)
348 TIGR01452 PGP_euk phosphoglyco 20.5 47 0.0012 12.2 4.0 37 35-77 5-44 (288)
349 TIGR03208 cyc_hxne_CoA_lg cycl 20.4 47 0.0012 12.2 8.1 54 415-473 418-472 (538)
350 TIGR00734 hisAF_rel hisA/hisF 20.2 43 0.0011 12.5 0.8 138 137-301 29-173 (230)
351 PRK12360 4-hydroxy-3-methylbut 20.2 48 0.0012 12.2 6.8 115 180-297 44-162 (281)
352 TIGR00437 feoB ferrous iron tr 20.2 48 0.0012 12.2 6.3 76 191-273 41-118 (733)
353 pfam00501 AMP-binding AMP-bind 20.1 48 0.0012 12.2 6.5 53 205-258 148-204 (412)
354 PRK06155 crotonobetaine/carnit 20.1 48 0.0012 12.2 8.1 53 415-472 413-466 (552)
355 PRK07684 consensus 20.1 48 0.0012 12.2 7.9 52 416-472 390-442 (516)
No 1
>TIGR00649 MG423 conserved hypothetical protein; InterPro: IPR004613 This is a family of conserved hypothetical proteins, the members of which contain an ATP-binding domain at the N-terminal end of the protein. It is possibly part of a superfamily of beta-lactmases..
Probab=100.00 E-value=0 Score=1143.33 Aligned_cols=542 Identities=35% Similarity=0.607 Sum_probs=511.1
Q ss_pred EEEEECCCCCCCCCEEEEEEECCCCCCEEEEEECCCCCC-----CC----CCCCEE----EECCCHHHHHHHHHCCCEEE
Q ss_conf 999940686834660699995177786489997767678-----88----767502----87079579876641246899
Q gi|254780869|r 6 LVFLPLGGVGEIGMNMALYGYGSPSSRKWIMIDCGVSFP-----KD----DLPGVD----LVFPDITFIMKERKNLMAIF 72 (559)
Q Consensus 6 i~~~~lGG~~eiG~N~~~~~~~~~~~~~~iiiD~G~~fp-----~~----~~~gid----~iiPd~~~l~~~~~~i~~i~ 72 (559)
+.|+||||++||||||++++| ++|++|||+|+.|| ++ .++|+| .+|||++||.++.+||+|||
T Consensus 1 ~~i~alGG~~E~GKNm~vve~----~~ev~i~D~G~~~PRVlIHed~di~~~~G~dL~~~~vIPD~~~l~~~~~kvkgI~ 76 (593)
T TIGR00649 1 IKIFALGGLEEIGKNMTVVEV----DDEVVIIDAGIRFPRVLIHEDTDIAEMLGVDLIEKGVIPDFTYLKENEDKVKGIV 76 (593)
T ss_pred CEEECCCCCCCCCCCEEEEEE----CCEEEEEECCCCCCCEEEECCCCHHHHCCHHHHHCCCCCCCHHHHHHCCCEEEEE
T ss_conf 967235886541762389987----7859998232237964641552035440411432031689616752125067889
Q ss_pred EECCCCCCCCCHHHHHHHCCC-CEECCHHHHHHHHHHHH-HCCCCCCCC-EEEECCCCEEEEC---CEEEEEEECCCCCC
Q ss_conf 605430121607888986299-77929999999999998-548865562-2551755557763---48999985567777
Q gi|254780869|r 73 ITHAHEDHYGALHDLWSFLHV-PVYASPFAIGLLEAKRV-YERVSKKIP-CISFQAGDKVDVG---AFSIESVRVNHSIP 146 (559)
Q Consensus 73 iTH~H~DHiGalp~l~~~~~~-pIY~s~~t~~li~~~~~-~~~~~~~~~-~~~i~~~~~~~~g---~~~v~~~~~~Hsip 146 (559)
|||||+|||||+|||++++++ |||||++|++|++.++. ++++....+ +.++..++.++++ ++.|+||++|||||
T Consensus 77 ~tHGH~DHIGav~yL~~~~~~~PiYGt~lt~~L~~~ki~~E~~l~~~~~yl~~~~~~~~~~~~~i~~~~~eFir~tHSIP 156 (593)
T TIGR00649 77 ITHGHEDHIGAVPYLLHQYGFPPIYGTPLTIALIKSKIKAEHGLNVRTDYLQEINEGEPVQVGKIENFAIEFIRVTHSIP 156 (593)
T ss_pred ECCCCCCCCCHHHHHHHHCCCCCEECCHHHHHHHHHHHHHHHCCCCCCCHHHEECCCCEEEEEECCCEEEEEEEEEECCC
T ss_conf 70871000122888986568882404378999999988654200225750210158960888750643884577143241
Q ss_pred CCCEEEEEECCCEEEECCCCEECCCCCCCCCCCHHHHHHCCCCCCEEEEECCCCCC--CCCCCCCHHHHHHHHHHHHHHC
Q ss_conf 65356798768179983340246776654238988998608788299996356457--8887777879999999998627
Q gi|254780869|r 147 ETMALVIRSPVGNIVHTGDWKLDDDAILGDVTDKDSLCAIGNEGILALMCDSTNAM--REGTCISEKGIKKNIYDIMKNA 224 (559)
Q Consensus 147 ~a~~~~I~t~~g~i~ytGDfk~d~~p~~g~~~d~~~l~~~~~~gv~~Li~esT~~~--~~~~~~sE~~v~~~i~~~~~~~ 224 (559)
||++++||||.|.|||+||||||++|+.|.++|+.+++++|++||+|||+||||+. ++|+|+||+.+...|.++|.++
T Consensus 157 dS~~~a~hTp~G~IVy~~DFKfD~~p~~~~~~Dl~~~~~~G~~GVL~LlsdsT~~~er~~g~TpSE~~~~~~l~~~~~~a 236 (593)
T TIGR00649 157 DSVGLALHTPEGSIVYAGDFKFDNTPVIGEPPDLNRIAELGKKGVLLLLSDSTNVEERNEGKTPSEAVVSELLDDIFKNA 236 (593)
T ss_pred CCEEEEEECCCCEEEEECCEEEECCCCCCCCCCHHHHHHHHCCCCEEEEECCEECCCCCCCCCCHHHHHHHHHHHHHHCC
T ss_conf 22188897698349983254553777889860079999973288489995020226757886871889989999986211
Q ss_pred CCC---EEEEECHHHHHHHHHHHHHHHHHCCEEEEECHHHHHHHHHHHHCCCCC-CC---------CCCCCHHHHCCCCC
Q ss_conf 983---999941477899999999998718869984486999999887428767-76---------54226566223880
Q gi|254780869|r 225 KGC---VLVTTFSSSVSRIRSIIDIAEQIGRKIVLLGSSLKRVVSVAIDVGIIK-KD---------QLFLSDESFGLYPR 291 (559)
Q Consensus 225 ~gr---Viv~~fasni~Ri~~i~~~a~~~~R~v~i~Grs~~~~~~~a~~~g~l~-~~---------~~~i~~~~~~~~p~ 291 (559)
+|| ||+||||||++|+|+++++|.+.|||++++||||.+++++|+++||++ +. ..++..++++++|+
T Consensus 237 ~gr~~G~i~ttFaSni~Rv~~~~~~A~k~~R~~~v~GrSm~~~~~~A~~lG~i~~p~~~riygsP~~~~i~~~e~~~~P~ 316 (593)
T TIGR00649 237 QGRKDGVIVTTFASNIHRVQQIIQIARKNGRKVAVIGRSMEKVLGIARKLGYIKLPEDARIYGSPKNLFISLKEINKYPK 316 (593)
T ss_pred CCCCCCEEEEECHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHHHHHCCCEECCCCCEEECCHHHHHHHHHHHHHCCC
T ss_conf 47877359986011488999999999856982999800178999999864812278755031380556799999971888
Q ss_pred CCEEEEEECCCCCHHHHHHHHCCCCCCCCCCCCCCEEEEEEECCCCHH-HHHHHHHH-HHHCCCEEEEECCCCCCEECCC
Q ss_conf 208999966963268898852027776530268966999961588617-78999997-6510311343035666413157
Q gi|254780869|r 292 EQLIVIATGSQGEPRSALAQLSRGEMRNVKLAEKDTVIFSSRAIPGNE-VAIGHIKN-RLVEQGVRVIAEDAECPVHVSG 369 (559)
Q Consensus 292 ~~~~ii~TGsqge~~a~l~ria~~~~~~i~l~~~D~vI~ss~~ipGnE-~~~~~~~n-~l~~~g~~vi~~~~~~~iH~SG 369 (559)
++++||||||||||+|+|.|||+++|+.++++++|||||||++||||| -++..++| .|.+.|++|++.. ...+||||
T Consensus 317 ~~~lii~TGsQGEp~A~L~RiAn~~h~~~~i~~~DtVVfSa~~IPG~~n~~~~~~~~~~L~~~ga~v~~~~-~~~~HvSG 395 (593)
T TIGR00649 317 ENYLIITTGSQGEPLAALTRIANGEHEQIRIRKGDTVVFSAPPIPGNENIAVSNTLDVRLARAGARVIKGE-LDDIHVSG 395 (593)
T ss_pred CCEEEEEECCCCCHHHHHHHCCCCCCCCEEECCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHC-CCCEEEEC
T ss_conf 63799985598941255501007887631004873489856899873779999999999998777874111-18716713
Q ss_pred CCCHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHCCCC---CEEEECCCEEEEECCCCEEEEEEEECCC-EEECCC
Q ss_conf 889789999997549539997045779999999878744786---3155003227897389704501232132-021233
Q gi|254780869|r 370 HPYPNDLKRMYQWIRPQVLVAIHGEPLHLVAHKELALQEGIA---CVPPVRNGKMLRLFPDPIEIIDEVVHGL-FLKDGF 445 (559)
Q Consensus 370 Ha~~edl~~li~~ikPk~~IPvHGe~rhl~~h~~la~~~gv~---~i~l~~NGd~i~l~~~~~~i~~~v~~g~-~~vDG~ 445 (559)
||++||+|.|++++|||||||+||||||+.+|+++|++||++ ++++++|||+++|.++..++.++++.|. .|||+.
T Consensus 396 HAs~Ed~k~llrllkPkyiiP~hGeyrm~~~h~~~A~~~G~~l~~~i~i~~NG~v~~~~~~~i~~~g~~~~G~P~~vD~~ 475 (593)
T TIGR00649 396 HASQEDHKLLLRLLKPKYIIPVHGEYRMLAAHTKLAEEEGYPLGEDIFILRNGDVLEIEGDEIKVAGKVPSGNPKLVDGA 475 (593)
T ss_pred CCCCHHHHHHHHHHCCCEEECCCCCHHHHHHHHHHHHHCCCEEHHCEEECCCCEEEEECCCEEEECCCCCCCCCEEEECC
T ss_conf 26734699999862985551178656789999999997396422147871287089972735222370025684267467
Q ss_pred CEECCCCHHHHHHHHHHHCCEEEEEEEECCCC-CEEECCEEEEECCEECCCCH---HHHHHHHHH-HHHHHHHHHHHCCC
Q ss_conf 10025505889999740387499999983899-88005379994012125665---889999999-99999985220036
Q gi|254780869|r 446 LIGKFADLGIAKRRQLSFVGHLSVNVLLDNHY-NIFGVPEIVDIGIPAYDGDG---GKIHKLLLK-TVITTVVDLPQFRR 520 (559)
Q Consensus 446 ~i~~~~~~vl~eR~~Ls~~GiV~V~viid~~~-~l~~~P~I~~~Gl~~~~~~~---~~l~~~i~~-~i~~~i~~~~~~~~ 520 (559)
|++++++.+++||++||++|+|+|++.+|+++ .+++.|++++|||+.. .++ +.++....+ .+.+.+.+......
T Consensus 476 G~~~Ig~si~~~R~~~se~Gvviv~i~~d~~k~~ll~~~~~~~rG~v~~-~~~kll~~li~~~~E~L~~~~~~~~~e~~n 554 (593)
T TIGR00649 476 GIGDIGNSILRERRQLSEDGVVIVVIYLDKKKSELLAGPEYSSRGVVLD-REEKLLEDLIKTAQEELIRKQISEITEFSN 554 (593)
T ss_pred CCCCHHHHHHHHHHHHHHCCEEEEEEEECCCCCHHHHCCCEEEEEEEEE-CCHHHHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf 7631124447768988448939999988178822210863566002651-262666889998876899988754211335
Q ss_pred ------CCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEE
Q ss_conf ------898999999999999999998288867899999
Q gi|254780869|r 521 ------KDLKLLRESISSALRSLLKKVWGKKPLVTVFIN 553 (559)
Q Consensus 521 ------~d~~~lk~~ir~~irk~~~k~~~KkP~V~v~I~ 553 (559)
.+|++||++++++++++|+++|.|+|+|+++|+
T Consensus 555 ~~~~GK~~w~~Lk~~~~~~l~~ll~~~t~~~P~Il~~i~ 593 (593)
T TIGR00649 555 IKRLGKVEWKELKVEIRDALMNLLYKKTKKAPMILPIIM 593 (593)
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHCC
T ss_conf 440167675899999999999999998404872232239
No 2
>COG0595 mRNA degradation ribonucleases J1/J2 (metallo-beta-lactamase superfamily) [Translation, ribosomal structure and biogenesis; Replication, recombination and repair]
Probab=100.00 E-value=0 Score=1087.99 Aligned_cols=545 Identities=41% Similarity=0.637 Sum_probs=520.5
Q ss_pred CCCEEEEEECCCCCCCCCEEEEEEECCCCCCEEEEEECCCCCCCCCCCCEEEECCCHHHHHHHHHCCCEEEEECCCCCCC
Q ss_conf 88639999406868346606999951777864899977676788876750287079579876641246899605430121
Q gi|254780869|r 2 KNEELVFLPLGGVGEIGMNMALYGYGSPSSRKWIMIDCGVSFPKDDLPGVDLVFPDITFIMKERKNLMAIFITHAHEDHY 81 (559)
Q Consensus 2 ~~~~i~~~~lGG~~eiG~N~~~~~~~~~~~~~~iiiD~G~~fp~~~~~gid~iiPd~~~l~~~~~~i~~i~iTH~H~DHi 81 (559)
+++++.|+||||++|||+|||+++| +++|+++|||++||+++++|+|++|||++||.+++++++||||||||+||+
T Consensus 5 ~~~~i~i~~lGG~~EiGkN~~vve~----~~~i~i~D~G~~fp~~~~~gvDliIPd~~yl~~n~~kvkgI~lTHgHeDHI 80 (555)
T COG0595 5 KKAKIKIFALGGVGEIGKNMYVVEY----GDDIIILDAGLKFPEDDLLGVDLIIPDFSYLEENKDKVKGIFLTHGHEDHI 80 (555)
T ss_pred CCCCEEEEEECCHHHHCCCEEEEEE----CCCEEEEECCCCCCCCCCCCCCEEECCHHHHHHCCCCCEEEEECCCCHHHC
T ss_conf 8785589980581022262389997----896899977656686435555588258277431500213999468744432
Q ss_pred CCHHHHHHHCC-CCEECCHHHHHHHHHHHHHCCCCC-CCCEEEECCCCEEEECCEEEEEEECCCCCCCCCEEEEEECCCE
Q ss_conf 60788898629-977929999999999998548865-5622551755557763489999855677776535679876817
Q gi|254780869|r 82 GALHDLWSFLH-VPVYASPFAIGLLEAKRVYERVSK-KIPCISFQAGDKVDVGAFSIESVRVNHSIPETMALVIRSPVGN 159 (559)
Q Consensus 82 Galp~l~~~~~-~pIY~s~~t~~li~~~~~~~~~~~-~~~~~~i~~~~~~~~g~~~v~~~~~~Hsip~a~~~~I~t~~g~ 159 (559)
||+||||++.+ +|||+|++|++|++.++.+++... ..+++++++++.+++|+|+|+||+|+||||||+|++|+||.|.
T Consensus 81 Gaip~ll~~~~~~piy~s~lt~~Li~~k~~~~~~~~~~~~~~ev~~~~~i~~~~~~v~f~~vtHSIPds~g~~i~Tp~G~ 160 (555)
T COG0595 81 GALPYLLKQVLFAPIYASPLTAALIKEKLKEHGLFKNENELHEVKPGSEIKFGSFEVEFFPVTHSIPDSLGIVIKTPEGN 160 (555)
T ss_pred CCHHHHHHCCCCCCEECCHHHHHHHHHHHHHHCCCCCCCCEEEECCCCEEEECCEEEEEEEECCCCCCCEEEEEECCCCC
T ss_conf 34678985277684444776699999898873211356743994799857767679999960355745168999879843
Q ss_pred EEECCCCEECCCCCCCCCCCHHHHHHCCCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECHHHHHH
Q ss_conf 99833402467766542389889986087882999963564578887777879999999998627983999941477899
Q gi|254780869|r 160 IVHTGDWKLDDDAILGDVTDKDSLCAIGNEGILALMCDSTNAMREGTCISEKGIKKNIYDIMKNAKGCVLVTTFSSSVSR 239 (559)
Q Consensus 160 i~ytGDfk~d~~p~~g~~~d~~~l~~~~~~gv~~Li~esT~~~~~~~~~sE~~v~~~i~~~~~~~~grViv~~fasni~R 239 (559)
|+||||||||++|..|+++|+.+++++|++||+||||||||+.+|++|+||+++.+++.++|++++||||++|||||++|
T Consensus 161 Iv~TGDFk~d~~~~~g~~~d~~r~~~~g~eGVl~LisdsTna~~pg~t~SE~~v~~~l~~i~~~a~grVIv~tfaSni~R 240 (555)
T COG0595 161 IVYTGDFKFDPTPVDGEPTDLARLAEIGKEGVLALISDSTNAENPGFTPSESEVGENLEDIIRNAKGRVIVTTFASNIER 240 (555)
T ss_pred EEEECCEEECCCCCCCCCCCHHHHHHHCCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECHHHHHH
T ss_conf 89968778558867777678899997466784799957865689998978899999999999738985999973446899
Q ss_pred HHHHHHHHHHHCCEEEEECHHHHHHHHHHHHCCCCCCC-CCCCCHHHHCCCCCCCEEEEEECCCCCHHHHHHHHCCCCCC
Q ss_conf 99999999871886998448699999988742876776-54226566223880208999966963268898852027776
Q gi|254780869|r 240 IRSIIDIAEQIGRKIVLLGSSLKRVVSVAIDVGIIKKD-QLFLSDESFGLYPREQLIVIATGSQGEPRSALAQLSRGEMR 318 (559)
Q Consensus 240 i~~i~~~a~~~~R~v~i~Grs~~~~~~~a~~~g~l~~~-~~~i~~~~~~~~p~~~~~ii~TGsqge~~a~l~ria~~~~~ 318 (559)
+|+++++|.++||+++++||||.+++.+|+++||++.+ +.++..++++.+|+++++++|||+||||+|+|+|||+++|+
T Consensus 241 i~~i~~~A~~~gR~vvv~GrSm~~~~~~a~~lg~~~~~~~~~i~~~~~~~~~~~~~lii~TG~qgep~aaL~r~a~~~h~ 320 (555)
T COG0595 241 IQTIIDAAEKLGRKVVVTGRSMERLIAIARRLGYLKLPDESFIEIREVKRYPDEEVLIICTGSQGEPMAALSRMANGEHR 320 (555)
T ss_pred HHHHHHHHHHCCCEEEEECHHHHHHHHHHHHCCCCCCCCCCCCCHHHHCCCCCCCEEEEEECCCCCCHHHHHHHHCCCCC
T ss_conf 99999999980991999867599999987643642277102227778432564546999928998706666676458753
Q ss_pred CCCCCCCCEEEEEEECCCCHHHHHHHHHHHHHCCCEEEEECCCCCCEECCCCCCHHHHHHHHHHCCCCEEEEECCCHHHH
Q ss_conf 53026896699996158861778999997651031134303566641315788978999999754953999704577999
Q gi|254780869|r 319 NVKLAEKDTVIFSSRAIPGNEVAIGHIKNRLVEQGVRVIAEDAECPVHVSGHPYPNDLKRMYQWIRPQVLVAIHGEPLHL 398 (559)
Q Consensus 319 ~i~l~~~D~vI~ss~~ipGnE~~~~~~~n~l~~~g~~vi~~~~~~~iH~SGHa~~edl~~li~~ikPk~~IPvHGe~rhl 398 (559)
+++++++|+|||||++|||||.++++++|+|++.|+++++... ..+|+||||+++||+.|++++||+|+|||||||||+
T Consensus 321 ~~~i~~gD~vIfss~~ipgne~~~~~~~n~l~~~g~~i~~~~~-~~~hvSGHas~eel~~mi~~l~Pky~iPvHGeyr~~ 399 (555)
T COG0595 321 YVKIKEGDTVIFSSSPIPGNEAAVYRLLNRLYKAGAKVITGGD-KKVHVSGHASREELKLMINLLRPKYLIPVHGEYRML 399 (555)
T ss_pred CEECCCCCEEEEECCCCCCCHHHHHHHHHHHHHCCCEEEECCC-CEEEECCCCCHHHHHHHHHHHCCCEECCCCCCCHHH
T ss_conf 1203689859996178698489999998799865968850566-426966889869999999966876355268861889
Q ss_pred HHHHHHHHHCCCC--CEEEECCCEEEEECCCCEEEEEEEECCCEEECCCCEECCCCHHHHHHHHHHHCCEEEEEEEECCC
Q ss_conf 9999878744786--31550032278973897045012321320212331002550588999974038749999998389
Q gi|254780869|r 399 VAHKELALQEGIA--CVPPVRNGKMLRLFPDPIEIIDEVVHGLFLKDGFLIGKFADLGIAKRRQLSFVGHLSVNVLLDNH 476 (559)
Q Consensus 399 ~~h~~la~~~gv~--~i~l~~NGd~i~l~~~~~~i~~~v~~g~~~vDG~~i~~~~~~vl~eR~~Ls~~GiV~V~viid~~ 476 (559)
.+|+++|.++|++ ++++++||++++|.++.++..++++.|+.|+||.+++|+++.+++||++||++|+|+|++.+|++
T Consensus 400 ~~~a~la~~~G~~~~~i~i~~nG~v~~l~~~~~~~~~~v~~g~~~iDg~~~gdvg~~vl~dR~~lse~G~v~v~v~~d~~ 479 (555)
T COG0595 400 VAHAKLAEEEGIPQENIFILRNGDVLELEGGKARVIGKVPAGDVYIDGNGIGDVGAIVLRDRRQLSEDGIVIVVVVIDKK 479 (555)
T ss_pred HHHHHHHHHCCCCCCCEEEECCCEEEEECCCCCCCCCCCCCCCEEECCCCCCCCHHHHHHHHHHCCCCCEEEEEEEECCC
T ss_conf 99998888628876537993493499844886531474454875875877786325777889861758779999998587
Q ss_pred -CCEEECCEEEEECCEECCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEE
Q ss_conf -98800537999401212566588999999999999985220036898999999999999999998288867899999
Q gi|254780869|r 477 -YNIFGVPEIVDIGIPAYDGDGGKIHKLLLKTVITTVVDLPQFRRKDLKLLRESISSALRSLLKKVWGKKPLVTVFIN 553 (559)
Q Consensus 477 -~~l~~~P~I~~~Gl~~~~~~~~~l~~~i~~~i~~~i~~~~~~~~~d~~~lk~~ir~~irk~~~k~~~KkP~V~v~I~ 553 (559)
+++++.|++.+|||++ ..+++.++.+..+.+.+.+.+..+.+ .+|+.+++.+|+.++++++++|+|+|+|+|+|+
T Consensus 480 ~~~~~~~p~~~~rG~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~lk~~ir~~l~~~~~~~~~r~P~i~~~i~ 555 (555)
T COG0595 480 KKKILAGPEISSRGFVY-VKESEKLIEEALELVENALESFLQEK-FDWKELKESIRRALRKFLYKKTKRRPLILPTVM 555 (555)
T ss_pred CCEECCCCCEEECCCCE-ECCCHHHHHHHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEC
T ss_conf 77232689677534300-25506789999999999999865125-788999999999999999887468864986549
No 3
>TIGR03675 arCOG00543 arCOG01782 universal archaeal KH-domain/beta-lactamase-domain protein. This family of proteins is universal in the archaea and consistsof an N-terminal type-1 KH-domain (pfam00013) a central beta-lactamase-domain (pfam00753) with a C-terminal motif associated with RNA metabolism (pfam07521). KH-domains are associated with RNA-binding, so taken together, this protein is a likely metal-dependent RNAase. This family was defined in as arCOG01782.
Probab=100.00 E-value=1.4e-45 Score=348.05 Aligned_cols=385 Identities=23% Similarity=0.340 Sum_probs=256.5
Q ss_pred CCCEEEEEECCCCCCCCCEEEEEEECCCCCCEEEEEECCCCCCCCCCCCEEEECCCHHHHHHHHHCCCEEEEECCCCCCC
Q ss_conf 88639999406868346606999951777864899977676788876750287079579876641246899605430121
Q gi|254780869|r 2 KNEELVFLPLGGVGEIGMNMALYGYGSPSSRKWIMIDCGVSFPKDDLPGVDLVFPDITFIMKERKNLMAIFITHAHEDHY 81 (559)
Q Consensus 2 ~~~~i~~~~lGG~~eiG~N~~~~~~~~~~~~~~iiiD~G~~fp~~~~~gid~iiPd~~~l~~~~~~i~~i~iTH~H~DHi 81 (559)
+++-++++||||..|+|++|.+++|.. ..+|+|||+....++. + -+|.++..+-..+.||||+|||||+||+
T Consensus 171 ~~~~vrit~LG~~~eVGRSc~l~~~~~----~~illDcG~~~~~~~~---~-~~P~~d~~e~~~~~IDAVvlTHAHLDH~ 242 (630)
T TIGR03675 171 KDRWVRVTALGGFREVGRSALLLSTPE----SRILLDCGVNVGANGD---N-AYPYLDVPEFQLDELDAVVITHAHLDHS 242 (630)
T ss_pred CCCEEEEEECCCCCCCCCEEEEEECCC----EEEEEECCCCCCCCCC---C-CCCCCCCCCCCCCCCCEEEEECCCCCCC
T ss_conf 897499983467670264589996398----1799988888777775---4-5886567779801185899833532125
Q ss_pred CCHHHHHHH-CCCCEECCHHHHHHHHHHHHHC-------CCCCC----------CCEEEECCCCEEEEC-CEEEEEEECC
Q ss_conf 607888986-2997792999999999999854-------88655----------622551755557763-4899998556
Q gi|254780869|r 82 GALHDLWSF-LHVPVYASPFAIGLLEAKRVYE-------RVSKK----------IPCISFQAGDKVDVG-AFSIESVRVN 142 (559)
Q Consensus 82 Galp~l~~~-~~~pIY~s~~t~~li~~~~~~~-------~~~~~----------~~~~~i~~~~~~~~g-~~~v~~~~~~ 142 (559)
|+||+|.+. ++-|||+|+.|+++.+-.+.+. +..+. ..+.+++.+++++++ +++++|++++
T Consensus 243 G~LP~L~k~Gf~GpIy~T~pT~dL~~llL~D~~ki~~~e~~~plYt~~dv~~~l~~~~~l~y~~~~~i~~~ik~tf~~AG 322 (630)
T TIGR03675 243 GLVPLLFKYGYDGPVYCTPPTRDLMTLLQLDYIDVAQREGKKPPYSSKDVREALKHTITLDYGEVTDIAPDIKLTFYNAG 322 (630)
T ss_pred CCCCHHHHCCCCCCEEECHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHCCEECCCCCEEECCCCEEEEEECCC
T ss_conf 63218876488898886545999999999989999870589999899999999844562489985971798499997688
Q ss_pred CCCCCCCEEEEEECCC--EEEECCCCEECCCCCCCCCCCHHHHHHCCCCCCEEEEECCCCCCCCCCCCC----HHHHHHH
Q ss_conf 7777653567987681--799833402467766542389889986087882999963564578887777----8799999
Q gi|254780869|r 143 HSIPETMALVIRSPVG--NIVHTGDWKLDDDAILGDVTDKDSLCAIGNEGILALMCDSTNAMREGTCIS----EKGIKKN 216 (559)
Q Consensus 143 Hsip~a~~~~I~t~~g--~i~ytGDfk~d~~p~~g~~~d~~~l~~~~~~gv~~Li~esT~~~~~~~~~s----E~~v~~~ 216 (559)
| |+||+++.++..+| +|+|||||+..+++...... ..-..+|+|++||||+.+...-++ |..+.+.
T Consensus 323 H-ILGSAmv~l~i~~g~~~ilfTGD~~~~~~rll~~A~-------~~~~~~D~LI~ESTYG~r~~~h~~r~e~e~~l~~~ 394 (630)
T TIGR03675 323 H-ILGSAIAHLHIGDGLYNIVYTGDFKYEKTRLLDPAV-------NKFPRVETLIMESTYGGRDDYQPSREEAEKELIKV 394 (630)
T ss_pred C-CCEEEEEEEEECCCCEEEEEECCCCCCCCCCCCCCC-------CCCCCCCEEEEECCCCCCCCCCCCHHHHHHHHHHH
T ss_conf 6-104479999976896799995998999776768756-------78777778999743577655689989999999999
Q ss_pred HHHHHHHCCCCEEEEECHHHHHHHHHHHHHHHHH-------CCEEEEECHHHHH-HHHHHHH-CCCCCC----------C
Q ss_conf 9999862798399994147789999999999871-------8869984486999-9998874-287677----------6
Q gi|254780869|r 217 IYDIMKNAKGCVLVTTFSSSVSRIRSIIDIAEQI-------GRKIVLLGSSLKR-VVSVAID-VGIIKK----------D 277 (559)
Q Consensus 217 i~~~~~~~~grViv~~fasni~Ri~~i~~~a~~~-------~R~v~i~Grs~~~-~~~~a~~-~g~l~~----------~ 277 (559)
+.+++++ .|+|++++|| ++|.|+++-+-.++ .-+|++.| |.. ...+-.. -.|++. .
T Consensus 395 I~et~~r-GGkVLIPaFA--vGRaQEll~iL~e~~~~g~lp~vPIY~Dg--Ma~~at~Iy~~yp~~l~~~lr~~i~~~g~ 469 (630)
T TIGR03675 395 VNETIKR-GGKVLIPVFA--VGRAQEVMLVLEEAMRKGLIPEVPVYLDG--MIWEATAIHTAYPEYLNKELRERIFHEGE 469 (630)
T ss_pred HHHHHHC-CCEEEEEEEC--CCHHHHHHHHHHHHHHCCCCCCCCEEEEC--HHHHHHHHHHHHHHHHCHHHHHHHHHCCC
T ss_conf 9999963-9829998633--65389999999999973999999899802--99999999999698759999999975689
Q ss_pred C-----CC--C-CHHHHCCC--CCCCEEEEEECCC---CCHHHHHHHHCCCCCCCCCCCCCCEEEEEEECCCCHHHHHHH
Q ss_conf 5-----42--2-65662238--8020899996696---326889885202777653026896699996158861778999
Q gi|254780869|r 278 Q-----LF--L-SDESFGLY--PREQLIVIATGSQ---GEPRSALAQLSRGEMRNVKLAEKDTVIFSSRAIPGNEVAIGH 344 (559)
Q Consensus 278 ~-----~~--i-~~~~~~~~--p~~~~~ii~TGsq---ge~~a~l~ria~~~~~~i~l~~~D~vI~ss~~ipGnE~~~~~ 344 (559)
+ .+ + +.++-..+ ..+-.+||+|..+ |..+..|.+++. .+..+|+|.....+|.= -.+
T Consensus 470 nPF~~~~~~~v~~~~~~~~i~~~~~P~IIIAtSGMl~GG~~~~~lk~~~~--------dpkN~IifvGYQaeGTl--GR~ 539 (630)
T TIGR03675 470 NPFLSEIFVRVEGSDERREIIESDEPAIILATSGMLNGGPVVEYLKLLAP--------DPRNSLVFVGYQAEGTL--GRR 539 (630)
T ss_pred CCCCCCCEEEECCHHHHHHHHHCCCCEEEEECCCCCCCCHHHHHHHHHCC--------CCCCEEEEECCCCCCCC--HHH
T ss_conf 95347863992788888988717996699989610175079999998659--------99873999728889984--688
Q ss_pred HHHHH-------------HCCCEEEEECCCCCCEE-CCCCCCHHHHHHHHHHCC--CCEEEEECCCHHHHHHHHHHHH-H
Q ss_conf 99765-------------10311343035666413-157889789999997549--5399970457799999998787-4
Q gi|254780869|r 345 IKNRL-------------VEQGVRVIAEDAECPVH-VSGHPYPNDLKRMYQWIR--PQVLVAIHGEPLHLVAHKELAL-Q 407 (559)
Q Consensus 345 ~~n~l-------------~~~g~~vi~~~~~~~iH-~SGHa~~edl~~li~~ik--Pk~~IPvHGe~rhl~~h~~la~-~ 407 (559)
+++.- .+..++|.+ +. .||||++.+|..+++.++ |+.++-||||..-+...++... +
T Consensus 540 I~~G~kei~i~g~~~~~~i~V~a~V~~------i~gFSaHAD~~~L~~~i~~~~p~P~~V~LVHGE~~~~~~La~~i~~~ 613 (630)
T TIGR03675 540 IQSGWREIPLTDEGKTETIKINMEVET------VEGFSGHSDRRQLMNYVRRMQPKPEKILLNHGEPSKILDLASSIYKK 613 (630)
T ss_pred HHCCCCEEEEECCCCCEEEEEEEEEEE------ECCCCCCCCHHHHHHHHHHHCCCCCEEEEECCCHHHHHHHHHHHHHH
T ss_conf 855885114625877468999879999------57835677989999999972779888999889989999999999999
Q ss_pred CCCCCEEEECCCEEEEE
Q ss_conf 47863155003227897
Q gi|254780869|r 408 EGIACVPPVRNGKMLRL 424 (559)
Q Consensus 408 ~gv~~i~l~~NGd~i~l 424 (559)
-|++ +..+.||+.++|
T Consensus 614 ~~i~-~~~P~n~Etirl 629 (630)
T TIGR03675 614 FNIE-TYAPKNLETIRL 629 (630)
T ss_pred HCCE-EECCCCCCEEEE
T ss_conf 7980-762799886871
No 4
>COG1782 Predicted metal-dependent RNase, consists of a metallo-beta-lactamase domain and an RNA-binding KH domain [General function prediction only]
Probab=100.00 E-value=1e-39 Score=304.70 Aligned_cols=391 Identities=25% Similarity=0.366 Sum_probs=266.0
Q ss_pred CCCEEEEEECCCCCCCCCEEEEEEECCCCCCEEEEEECCCCCCC---CCCCCEEEECCCHHHHHHHHHCCCEEEEECCCC
Q ss_conf 88639999406868346606999951777864899977676788---876750287079579876641246899605430
Q gi|254780869|r 2 KNEELVFLPLGGVGEIGMNMALYGYGSPSSRKWIMIDCGVSFPK---DDLPGVDLVFPDITFIMKERKNLMAIFITHAHE 78 (559)
Q Consensus 2 ~~~~i~~~~lGG~~eiG~N~~~~~~~~~~~~~~iiiD~G~~fp~---~~~~gid~iiPd~~~l~~~~~~i~~i~iTH~H~ 78 (559)
++.-+++.+|||..|+|++|.+++. .+..+|+|||++... ++.|-.| +|+|.. +.+|||+|||||+
T Consensus 177 ~~~wvRvt~LGg~~EVGRSa~lv~T----~eSrVLlDcG~n~a~~~~~~~Pyl~--vpE~~~-----~~lDAViiTHAHL 245 (637)
T COG1782 177 KDRWVRVTALGGFREVGRSALLVST----PESRVLLDCGVNVAGNGEDAFPYLD--VPEFQP-----DELDAVIITHAHL 245 (637)
T ss_pred CCCEEEEEEECCCHHCCCEEEEEEC----CCCEEEEECCCCCCCCCCCCCCCCC--CCCCCC-----CCCCEEEEEECCC
T ss_conf 6745999961241120625699736----8833899636567788643574455--610251-----2053699850234
Q ss_pred CCCCCHHHHHHH-CCCCEECCHHHHHHHHHH-------HHHCCCCCCC----------CEEEECCCCEEEEC-CEEEEEE
Q ss_conf 121607888986-299779299999999999-------9854886556----------22551755557763-4899998
Q gi|254780869|r 79 DHYGALHDLWSF-LHVPVYASPFAIGLLEAK-------RVYERVSKKI----------PCISFQAGDKVDVG-AFSIESV 139 (559)
Q Consensus 79 DHiGalp~l~~~-~~~pIY~s~~t~~li~~~-------~~~~~~~~~~----------~~~~i~~~~~~~~g-~~~v~~~ 139 (559)
||+|.||+|+++ ++-|||||+.|..++--. ...++..+.+ ..++++.+++-++. ++++||+
T Consensus 246 DH~G~lP~LfkYgy~GPVY~T~PTRDlm~LLq~Dyi~va~keg~~ppY~~k~v~~~lkhtItldYgevTDIaPDirLTf~ 325 (637)
T COG1782 246 DHCGFLPLLFKYGYDGPVYCTPPTRDLMVLLQLDYIEVAEKEGGEPPYESKDVRKVLKHTITLDYGEVTDIAPDIRLTFY 325 (637)
T ss_pred CCCCCHHHHHHCCCCCCEEECCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHEEEEECCCCCCCCCCCCEEEEE
T ss_conf 43452145665178887431797188999998879999996499999887899988754541025762446876178984
Q ss_pred ECCCCCCCCCEEEEEECCC--EEEECCCCEECCCCCCCCCCCHHHHHHCCCCCCEEEEECCCCCCCCCCCCCHHHHHHHH
Q ss_conf 5567777653567987681--79983340246776654238988998608788299996356457888777787999999
Q gi|254780869|r 140 RVNHSIPETMALVIRSPVG--NIVHTGDWKLDDDAILGDVTDKDSLCAIGNEGILALMCDSTNAMREGTCISEKGIKKNI 217 (559)
Q Consensus 140 ~~~Hsip~a~~~~I~t~~g--~i~ytGDfk~d~~p~~g~~~d~~~l~~~~~~gv~~Li~esT~~~~~~~~~sE~~v~~~i 217 (559)
.++| |.||++..+|..+| +|+||||||+..+.+..... ++|.+ |..|++||||..++...++..+.++.+
T Consensus 326 NAGH-ILGSA~~HlHIGdGlyNi~yTGDfk~~~trLl~~A~--n~FpR-----vEtlimEsTYGg~~d~q~~R~eaE~~L 397 (637)
T COG1782 326 NAGH-ILGSAMAHLHIGDGLYNIVYTGDFKFEKTRLLEPAN--NKFPR-----VETLIMESTYGGRDDVQPPREEAEKEL 397 (637)
T ss_pred CCCC-HHCCEEEEEEECCCCEEEEEECCCCCCCEECCCHHH--CCCCC-----HHEEEEEECCCCCCCCCCCHHHHHHHH
T ss_conf 1641-013101588864871357994344444012057333--36832-----320465301377544577678999999
Q ss_pred HHHHHHC---CCCEEEEECHHHHHHHHHHHHHHHHHCC-------EEEEECHHHHH-HHHHH------HHC--CCCC-CC
Q ss_conf 9998627---9839999414778999999999987188-------69984486999-99988------742--8767-76
Q gi|254780869|r 218 YDIMKNA---KGCVLVTTFSSSVSRIRSIIDIAEQIGR-------KIVLLGSSLKR-VVSVA------IDV--GIIK-KD 277 (559)
Q Consensus 218 ~~~~~~~---~grViv~~fasni~Ri~~i~~~a~~~~R-------~v~i~Grs~~~-~~~~a------~~~--g~l~-~~ 277 (559)
.+++.++ .|.|++++|| ++|-|+++-+-++.=| +|++.|-=++. .+.+| +++ ..+. ..
T Consensus 398 ~~vi~~t~~rGGKvLIP~fA--VGR~QEvM~VLee~mr~g~ipe~PVYlDGMI~EatAIhtaYPEyL~~~lr~~I~~~g~ 475 (637)
T COG1782 398 IKVINDTLKRGGKVLIPVFA--VGRSQEVMIVLEEAMRKGLIPEVPVYLDGMIWEATAIHTAYPEYLNKELRERIFHEGE 475 (637)
T ss_pred HHHHHHHHHCCCEEEEEEEE--CCCCCEEHHHHHHHHHCCCCCCCCEEEEEEEHHHHHHHHCCHHHHHHHHHHHHHCCCC
T ss_conf 99999987369769987652--2664010677999985398886645662133023567530877666889999860799
Q ss_pred CCCCC----------HHHHCCCCCCCEEEEEECCC---CCHHHHHHHHCCCCCCCCCCCCCCEEEEEEECCCCH-HHHHH
Q ss_conf 54226----------56622388020899996696---326889885202777653026896699996158861-77899
Q gi|254780869|r 278 QLFLS----------DESFGLYPREQLIVIATGSQ---GEPRSALAQLSRGEMRNVKLAEKDTVIFSSRAIPGN-EVAIG 343 (559)
Q Consensus 278 ~~~i~----------~~~~~~~p~~~~~ii~TGsq---ge~~a~l~ria~~~~~~i~l~~~D~vI~ss~~ipGn-E~~~~ 343 (559)
+.|.+ .++.....++.++||+|..+ |-....+..+|.+ |..+.||-+...+|. -+.+.
T Consensus 476 NPF~se~f~~V~~~~~r~~i~~~~ep~iIlaTSGMlnGGPvveyfk~lA~D--------prntliFVgYQAeGTLGRriq 547 (637)
T COG1782 476 NPFLSEIFKRVEGSDERQEIIESDEPAIILATSGMLNGGPVVEYFKHLAPD--------PKNTLIFVGYQAEGTLGRRIQ 547 (637)
T ss_pred CCCCCCCEEECCCHHHHHHHHCCCCCEEEEECCCCCCCCCHHHHHHHHCCC--------CCCEEEEEEECCCCCHHHHHH
T ss_conf 975313015457715788875489973999446654688289999984789--------876289998204763204664
Q ss_pred HHHHH---HHCCC-EEEEECCCCCCEE----CCCCCCHHHHHHHHHHCC--CCEEEEECCCHHHHHHHHHHHHHCCC-CC
Q ss_conf 99976---51031-1343035666413----157889789999997549--53999704577999999987874478-63
Q gi|254780869|r 344 HIKNR---LVEQG-VRVIAEDAECPVH----VSGHPYPNDLKRMYQWIR--PQVLVAIHGEPLHLVAHKELALQEGI-AC 412 (559)
Q Consensus 344 ~~~n~---l~~~g-~~vi~~~~~~~iH----~SGHa~~edl~~li~~ik--Pk~~IPvHGe~rhl~~h~~la~~~gv-~~ 412 (559)
.=... ....| .+++. ....++ .|||+.+.+|...++.++ |+-++-+|||..-....+..... ++ ..
T Consensus 548 ~G~kEipi~~~~G~te~i~--inMeV~tieGFSGHsdrrqL~~yvr~~~PkP~ki~~~HGe~sk~~~lA~si~~-~~~i~ 624 (637)
T COG1782 548 SGAKEIPIPGEDGKTEVIK--VNMEVETIEGFSGHSDRRQLMKYVRRMNPKPEKILLNHGEPSKCLDLASSIRR-KFKIE 624 (637)
T ss_pred CCCEECCCCCCCCCEEEEE--EEEEEEEECCCCCCCCHHHHHHHHHHCCCCCCEEEEECCCHHHHHHHHHHHHH-HHCEE
T ss_conf 4760232226899769999--76789984575777548999999986499985357646986789999999986-50515
Q ss_pred EEEECCCEEEEE
Q ss_conf 155003227897
Q gi|254780869|r 413 VPPVRNGKMLRL 424 (559)
Q Consensus 413 i~l~~NGd~i~l 424 (559)
+..+.|.+.+++
T Consensus 625 t~ap~nLetiR~ 636 (637)
T COG1782 625 TYAPKNLETIRL 636 (637)
T ss_pred EECCCCCCCEEC
T ss_conf 664654010642
No 5
>COG1236 YSH1 Predicted exonuclease of the beta-lactamase fold involved in RNA processing [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.2e-36 Score=282.56 Aligned_cols=383 Identities=23% Similarity=0.291 Sum_probs=247.9
Q ss_pred EEEECCCCCCCCCEEEEEEECCCCCCEEEEEECCCCCCCC--CCCCEEEECCCHHHHHHHHHCCCEEEEECCCCCCCCCH
Q ss_conf 9994068683466069999517778648999776767888--76750287079579876641246899605430121607
Q gi|254780869|r 7 VFLPLGGVGEIGMNMALYGYGSPSSRKWIMIDCGVSFPKD--DLPGVDLVFPDITFIMKERKNLMAIFITHAHEDHYGAL 84 (559)
Q Consensus 7 ~~~~lGG~~eiG~N~~~~~~~~~~~~~~iiiD~G~~fp~~--~~~gid~iiPd~~~l~~~~~~i~~i~iTH~H~DHiGal 84 (559)
.+.++|+..|+|+.|.++++.. ..+++|||+..... ..|..+ .. . ++|+++|||+|.||+||+
T Consensus 2 ~~~~~g~~~evg~s~~~l~~~~----~~il~D~G~~~~~~~~~~p~~~-~~---------~-~vDavllTHaHlDH~g~l 66 (427)
T COG1236 2 TLRFLGAAREVGRSCVLLETGG----TRILLDCGLFPGDPSPERPLLP-PF---------P-KVDAVLLTHAHLDHIGAL 66 (427)
T ss_pred CEECCCCCCCCCCEEEEEEECC----CEEEECCCCCCCCCCCCCCCCC-CC---------C-CCCEEEEECCCHHHHCCC
T ss_conf 1453465578775468987479----7699658988576765576788-88---------8-767799600652432346
Q ss_pred HHHHHH-CCCCEECCHHHHHHHHHHHHHCCCCC----------------CCCEEEECCCCEEEECCEEEEEEECCCCCCC
Q ss_conf 888986-29977929999999999998548865----------------5622551755557763489999855677776
Q gi|254780869|r 85 HDLWSF-LHVPVYASPFAIGLLEAKRVYERVSK----------------KIPCISFQAGDKVDVGAFSIESVRVNHSIPE 147 (559)
Q Consensus 85 p~l~~~-~~~pIY~s~~t~~li~~~~~~~~~~~----------------~~~~~~i~~~~~~~~g~~~v~~~~~~Hsip~ 147 (559)
|++... ++.|||+|+.|+++.+-.+.+.-... ...+++++.++++++++++|++|+++| |||
T Consensus 67 p~l~~~~~~~~v~aT~~T~~l~~~~l~d~~~~~~~~~~~~~~~~d~~~~~~~~~~~~yg~~~~v~~~~v~~~~AGH-ilG 145 (427)
T COG1236 67 PYLVRNGFEGPVYATPPTAALLKVLLGDSLKLAEGPDKPPYSEEDVERVPDLIRPLPYGEPVEVGGVKVTFYNAGH-ILG 145 (427)
T ss_pred HHHHHHCCCCCEEECHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHCEEEECCCCEEEECCEEEEEECCCC-CCC
T ss_conf 7887631278657535189999987311101035777776543456655522277058981786528999971797-410
Q ss_pred CCEEEEEECCCEEEECCCCEECCCCCCCCCCCHHHHHHCCCCCCEEEEECCCCCCCCCCCCCH--HHHHHHHHHHHHHCC
Q ss_conf 535679876817998334024677665423898899860878829999635645788877778--799999999986279
Q gi|254780869|r 148 TMALVIRSPVGNIVHTGDWKLDDDAILGDVTDKDSLCAIGNEGILALMCDSTNAMREGTCISE--KGIKKNIYDIMKNAK 225 (559)
Q Consensus 148 a~~~~I~t~~g~i~ytGDfk~d~~p~~g~~~d~~~l~~~~~~gv~~Li~esT~~~~~~~~~sE--~~v~~~i~~~~~~~~ 225 (559)
|+++.++.++++|+|||||+--+++..... +.... +|+||+||||..+.....++ ..+.+.+.+.+.. .
T Consensus 146 sa~~~le~~~~~ilytGD~~~~~~~l~~~a-------~~~~~-~DvLI~EsTYg~~~~~~r~~~e~~f~~~v~~~l~~-G 216 (427)
T COG1236 146 SAAILLEVDGGRILYTGDVKRRKDRLLNGA-------ELPPC-IDVLIVESTYGDRLHPNRDEVERRFIESVKAALER-G 216 (427)
T ss_pred EEEEEEEECCCEEEEEECCCCCCCCCCCCC-------CCCCC-CCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHC-C
T ss_conf 279999968947999823677778777776-------77888-87899806558877888789999999999998757-9
Q ss_pred CCEEEEECHHHHHHHHHHHHHHHHHC----CEEEEECHHHHHHHHHHHHCCCCCCCCCCC-CHH--------H---HCCC
Q ss_conf 83999941477899999999998718----869984486999999887428767765422-656--------6---2238
Q gi|254780869|r 226 GCVLVTTFSSSVSRIRSIIDIAEQIG----RKIVLLGSSLKRVVSVAIDVGIIKKDQLFL-SDE--------S---FGLY 289 (559)
Q Consensus 226 grViv~~fasni~Ri~~i~~~a~~~~----R~v~i~Grs~~~~~~~a~~~g~l~~~~~~i-~~~--------~---~~~~ 289 (559)
|.+++++|| ++|.|+++......+ -+|++.|---.+...+++....+..+.... ... . ....
T Consensus 217 G~vlipafa--~graQEll~~L~~~~~~~~~pi~~d~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 294 (427)
T COG1236 217 GTVLIPAFA--LGRAQELLLILRELGFAGDYPIYVDGPIARVALAYAKYPIGLDLPDLLKVAESRFRFVESRRNSMREGI 294 (427)
T ss_pred CEEEEECCC--CCHHHHHHHHHHHHCCCCCCCEEECCHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCCHHHHHCCCC
T ss_conf 849994056--708999999999752457887774468999999998623567771677877621441331222110023
Q ss_pred CCCCEEEEEECCC---CCHHHHHHHHCCCCCCCCCCCCCCEEEEEEECCCCH-HHHHHHHHHHHHCCCEEEEECCCCCCE
Q ss_conf 8020899996696---326889885202777653026896699996158861-778999997651031134303566641
Q gi|254780869|r 290 PREQLIVIATGSQ---GEPRSALAQLSRGEMRNVKLAEKDTVIFSSRAIPGN-EVAIGHIKNRLVEQGVRVIAEDAECPV 365 (559)
Q Consensus 290 p~~~~~ii~TGsq---ge~~a~l~ria~~~~~~i~l~~~D~vI~ss~~ipGn-E~~~~~~~n~l~~~g~~vi~~~~~~~i 365 (559)
-.+..+++.+.+. |..+..+.+++.+ +...+++......|. .+.....-..+.-.|.++-.......+
T Consensus 295 ~~~~~vi~a~~gm~~~g~~~~~~~~~~~~--------~~n~~~l~~~~~~~t~gr~~~~~~~~~~~~~~~i~~~~~ve~~ 366 (427)
T COG1236 295 DKGPAVVLAAPGMLKGGRSRYYLKHLLSD--------EKNWVLLPGYQAEGTLGRVLLEGGTSVHIKGIEIKVKARVEEL 366 (427)
T ss_pred CCCCEEEEECCCCCCCCCHHHHHHHHHCC--------CCCCEEEECCCCCCCHHHHHHCCCCEEEECCEEECCCCEEEEE
T ss_conf 57844999547200377346677765047--------6573884040125631446650771553123020345427987
Q ss_pred ECCCCCCHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHCCC--CCEEEECCCEEEEE
Q ss_conf 315788978999999754953999704577999999987874478--63155003227897
Q gi|254780869|r 366 HVSGHPYPNDLKRMYQWIRPQVLVAIHGEPLHLVAHKELALQEGI--ACVPPVRNGKMLRL 424 (559)
Q Consensus 366 H~SGHa~~edl~~li~~ikPk~~IPvHGe~rhl~~h~~la~~~gv--~~i~l~~NGd~i~l 424 (559)
-.|.||..++|..+++.+.|+.++-+||+........+...+.+. ..+.++.||+.+.+
T Consensus 367 ~~s~Had~~~l~~~i~~~~~~~v~~~Hg~~~~~~~~~~~~~~e~~~~~~~~~p~~~~~~~~ 427 (427)
T COG1236 367 DFSAHADGDELLEFIKDISPPKVVLVHGEPEYGAALRARLLEELIGIRELELPANGEEYEL 427 (427)
T ss_pred ECCCCCCHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHCCCCCEEECCCCCCCCCC
T ss_conf 1212478188999987369863999838611335899999985089632434776410259
No 6
>KOG1136 consensus
Probab=100.00 E-value=7.9e-32 Score=247.92 Aligned_cols=441 Identities=19% Similarity=0.272 Sum_probs=270.4
Q ss_pred EEEEEECCCCCCCCCEEEEEEECCCCCCEEEEEECCC--CCCCCCCCCEEEECCCHHHHHHHH---HCCCEEEEECCCCC
Q ss_conf 3999940686834660699995177786489997767--678887675028707957987664---12468996054301
Q gi|254780869|r 5 ELVFLPLGGVGEIGMNMALYGYGSPSSRKWIMIDCGV--SFPKDDLPGVDLVFPDITFIMKER---KNLMAIFITHAHED 79 (559)
Q Consensus 5 ~i~~~~lGG~~eiG~N~~~~~~~~~~~~~~iiiD~G~--~fp~~~~~gid~iiPd~~~l~~~~---~~i~~i~iTH~H~D 79 (559)
+++++|||...++|++|.++.+++.. |++|||+ +|.++-. .|||+|+.+.. +-++.|+|||.|+|
T Consensus 3 ~i~v~pLGAGQdvGrSCilvsi~Gk~----iM~DCGMHMG~nD~rR------fPdFSyI~~~g~~~~~idCvIIsHFHlD 72 (501)
T KOG1136 3 EIKVTPLGAGQDVGRSCILVSIGGKN----IMFDCGMHMGFNDDRR------FPDFSYISKSGRFTDAIDCVIISHFHLD 72 (501)
T ss_pred CCEEEECCCCCCCCCEEEEEEECCCE----EEEECCCCCCCCCCCC------CCCCEEECCCCCCCCCEEEEEEEEECCC
T ss_conf 51477546776257427999977907----8995454555576566------8885236688874540458998532110
Q ss_pred CCCCHHHHHHH--CCCCEECCHHHHHHHHHHHHHC-----CCCCCC-------------CEEEECCCCEEEE-CCEEEEE
Q ss_conf 21607888986--2997792999999999999854-----886556-------------2255175555776-3489999
Q gi|254780869|r 80 HYGALHDLWSF--LHVPVYASPFAIGLLEAKRVYE-----RVSKKI-------------PCISFQAGDKVDV-GAFSIES 138 (559)
Q Consensus 80 HiGalp~l~~~--~~~pIY~s~~t~~li~~~~~~~-----~~~~~~-------------~~~~i~~~~~~~~-g~~~v~~ 138 (559)
|+|||||...- ++-|||+|..|.++.-..+++. ....+. +...+...+++++ .++.|++
T Consensus 73 HcGaLPyfsEv~GY~GPIYMt~PTkaicPvlLeDyRkv~vd~kGe~n~FT~q~I~nCMKKVv~i~l~qt~~vD~dl~Ira 152 (501)
T KOG1136 73 HCGALPYFSEVVGYDGPIYMTYPTKAICPVLLEDYRKVAVDRKGESNFFTTQDIKNCMKKVVAIDLHQTIQVDEDLQIRA 152 (501)
T ss_pred CCCCCCCHHHHHCCCCCEEEECCHHHHCHHHHHHHHHHHCCCCCCCCCEEHHHHHHHHHHEEEEEEHHEEEECCCCEEEE
T ss_conf 04664005766177886478556353053889888987616567533200898999876506733022077255413643
Q ss_pred EECCCCCCCCCEEEEEECCCEEEECCCCEECCCCCCCCCCCHHHHHHCCCCCCEEEEECCCCCC--CCCCCCCHHHHHHH
Q ss_conf 8556777765356798768179983340246776654238988998608788299996356457--88877778799999
Q gi|254780869|r 139 VRVNHSIPETMALVIRSPVGNIVHTGDWKLDDDAILGDVTDKDSLCAIGNEGILALMCDSTNAM--REGTCISEKGIKKN 216 (559)
Q Consensus 139 ~~~~Hsip~a~~~~I~t~~g~i~ytGDfk~d~~p~~g~~~d~~~l~~~~~~gv~~Li~esT~~~--~~~~~~sE~~v~~~ 216 (559)
|-++| +.||++|.|+-++..++|||||..-+..-.|. +.+-+--.++||+||||+. |+.+-..|.++.+.
T Consensus 153 yYAGH-VLGAaMf~ikvGd~svvYTGDYnmTpDrHLGa-------A~id~~rpdlLIsESTYattiRdskr~rERdFLk~ 224 (501)
T KOG1136 153 YYAGH-VLGAAMFYIKVGDQSVVYTGDYNMTPDRHLGA-------AWIDKCRPDLLISESTYATTIRDSKRCRERDFLKK 224 (501)
T ss_pred EECCC-CCCEEEEEEEECCEEEEEECCCCCCCCCCCCH-------HHHCCCCCCEEEEECCCEEEECCCCCHHHHHHHHH
T ss_conf 31232-00005799984553589846766786434560-------43313367668753100122035653127899999
Q ss_pred HHHHHHHCCCCEEEEECHHHHHHHHHHHHHHH----HHCCEEEEE---CHHHHHH----HHHHHHCCCCCC---CCCCCC
Q ss_conf 99998627983999941477899999999998----718869984---4869999----998874287677---654226
Q gi|254780869|r 217 IYDIMKNAKGCVLVTTFSSSVSRIRSIIDIAE----QIGRKIVLL---GSSLKRV----VSVAIDVGIIKK---DQLFLS 282 (559)
Q Consensus 217 i~~~~~~~~grViv~~fasni~Ri~~i~~~a~----~~~R~v~i~---Grs~~~~----~~~a~~~g~l~~---~~~~i~ 282 (559)
..+-+.. .|+|+++.|| ++|.|++.-+.. +.|-++.++ |-.-..+ +-++...+-++. ....++
T Consensus 225 VhecVa~-GGkvlIPvFA--LGRAQElCiLLd~YWERm~lk~Piyfs~Glte~an~yyk~fiswtn~~v~k~~~~rNmfd 301 (501)
T KOG1136 225 VHECVAR-GGKVLIPVFA--LGRAQELCILLDDYWERMNLKVPIYFSSGLTEKANMYYKMFISWTNENVKKKFVERNMFD 301 (501)
T ss_pred HHHHHHC-CCEEEEEEEE--CCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHCHHHHHHHHHCCCCHHHHHCCCCCCC
T ss_conf 9999865-9839988641--340788888887788862657785011355401123744310103545556531577444
Q ss_pred HHHHCCC------CCCCEEEEEECCCCCHHHHHHHHCCCCCCCCCCCCCCEEEEEEECCCCHHHHHHHHHHH-----HHC
Q ss_conf 5662238------80208999966963268898852027776530268966999961588617789999976-----510
Q gi|254780869|r 283 DESFGLY------PREQLIVIATGSQGEPRSALAQLSRGEMRNVKLAEKDTVIFSSRAIPGNEVAIGHIKNR-----LVE 351 (559)
Q Consensus 283 ~~~~~~~------p~~~~~ii~TGsqge~~a~l~ria~~~~~~i~l~~~D~vI~ss~~ipGnE~~~~~~~n~-----l~~ 351 (559)
.+.++-. .+.-.++.+| .|-..+. ++-.-++.+.-.+...||+.-.-..|. --.+++|. ++.
T Consensus 302 fkhiKpfd~~~~~~pGp~VlFat--PGMLhaG---~SLkvFK~W~~~~~NlvimPGYcV~GT--vG~kvl~G~~kvei~~ 374 (501)
T KOG1136 302 FKHIKPFDRSYIEAPGPMVLFAT--PGMLHAG---FSLKVFKKWCPDPLNLVIMPGYCVAGT--VGHKVLNGATKVEIYG 374 (501)
T ss_pred CCCCCHHHHHHHCCCCCEEEECC--CCCCCCC---CCHHHHHHHCCCCCCEEEECCCEECCC--HHHHHHCCCCEEEEEE
T ss_conf 55577023344318987799768--7610266---336888865898456686137233452--1255517860798712
Q ss_pred CCEEEEECCCCCCEECCCCCCHHHHHHHHHHCCCCEEEEECCCHHHHHHHH-HHHHHCCCCCEEEECCCEEEEECCCCEE
Q ss_conf 311343035666413157889789999997549539997045779999999-8787447863155003227897389704
Q gi|254780869|r 352 QGVRVIAEDAECPVHVSGHPYPNDLKRMYQWIRPQVLVAIHGEPLHLVAHK-ELALQEGIACVPPVRNGKMLRLFPDPIE 430 (559)
Q Consensus 352 ~g~~vi~~~~~~~iH~SGHa~~edl~~li~~ikPk~~IPvHGe~rhl~~h~-~la~~~gv~~i~l~~NGd~i~l~~~~~~ 430 (559)
.-++|-. . -..+..|.||....+..+++...||.++-||||--.+.--+ ++-.+-+++ ++++.||+.+.+..-. .
T Consensus 375 ~~~eirl-~-V~~maFSaHaDAkGIm~li~~csPknVmlVHGE~~kM~~Lk~ki~~e~~ip-~~mPaNGetv~i~s~~-~ 450 (501)
T KOG1136 375 TKVEIRL-K-VEYMAFSAHADAKGIMQLIKQCSPKNVMLVHGEKSKMKFLKEKIESEFDIP-TFMPANGETVVISSTT-Y 450 (501)
T ss_pred EEEEEEE-E-EEEEEECCCCCCHHHHHHHHHCCCCEEEEEECCCHHHHHHHHHHHHHCCCC-EEECCCCCEEEECCCC-E
T ss_conf 4789999-8-888642145685469999873596627999556305388888657641983-3657999889952665-1
Q ss_pred EEEEEECCCEEECCCCEECCCCHHHHHHHHHHHCCEEEEEEEECCCCCE
Q ss_conf 5012321320212331002550588999974038749999998389988
Q gi|254780869|r 431 IIDEVVHGLFLKDGFLIGKFADLGIAKRRQLSFVGHLSVNVLLDNHYNI 479 (559)
Q Consensus 431 i~~~v~~g~~~vDG~~i~~~~~~vl~eR~~Ls~~GiV~V~viid~~~~l 479 (559)
+.-+++..-..---+.-....+.-++.|..-..+|++++. .|++..+
T Consensus 451 i~~ri~~~~~~~~~k~~~k~s~~qlr~~~~r~~~g~~v~~--kd~~~~i 497 (501)
T KOG1136 451 IKARIPDEFLVSLSKPNLKFSSTQLRVTDHRTADGVLVIE--KDKKAKI 497 (501)
T ss_pred EEECCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCEEEEE--ECCHHHH
T ss_conf 6551768999874584432024668777430147349998--5214530
No 7
>KOG1137 consensus
Probab=99.97 E-value=3.9e-29 Score=228.53 Aligned_cols=391 Identities=19% Similarity=0.233 Sum_probs=252.0
Q ss_pred CCCEEEEEECCCCCCCCCEEEEEEECCCCCCEEEEEECCCCCCC----CCCCCEEEECCCHHHHHHHHHCCCEEEEECCC
Q ss_conf 88639999406868346606999951777864899977676788----87675028707957987664124689960543
Q gi|254780869|r 2 KNEELVFLPLGGVGEIGMNMALYGYGSPSSRKWIMIDCGVSFPK----DDLPGVDLVFPDITFIMKERKNLMAIFITHAH 77 (559)
Q Consensus 2 ~~~~i~~~~lGG~~eiG~N~~~~~~~~~~~~~~iiiD~G~~fp~----~~~~gid~iiPd~~~l~~~~~~i~~i~iTH~H 77 (559)
+.++|.|+|||+..|+|++|.+++|.+.. +++|||+- |. +++|=.|.+ ...+++.++|||.|
T Consensus 10 ~~d~l~~~pLGag~EVGRSC~ile~kGk~----iMld~gvh-paysg~aslpf~d~v---------d~s~id~llIthFh 75 (668)
T KOG1137 10 NSDQLKFTPLGAGNEVGRSCHILEYKGKT----IMLDCGVH-PAYSGMASLPFYDEV---------DLSAIDPLLITHFH 75 (668)
T ss_pred CCCCEEEEECCCCCCCCCEEEEEEECCEE----EEECCCCC-CCCCCCCCCCCHHHC---------CCCCCCHHHHHHHH
T ss_conf 77717998778876257337999966837----98536667-453444446421004---------60105478876653
Q ss_pred CCCCCCHHHHHHHC--CCCEECCHHHHHHHHHHHHHCCCC----C-------------CCCEEEECCCCEEEECCEEEEE
Q ss_conf 01216078889862--997792999999999999854886----5-------------5622551755557763489999
Q gi|254780869|r 78 EDHYGALHDLWSFL--HVPVYASPFAIGLLEAKRVYERVS----K-------------KIPCISFQAGDKVDVGAFSIES 138 (559)
Q Consensus 78 ~DHiGalp~l~~~~--~~pIY~s~~t~~li~~~~~~~~~~----~-------------~~~~~~i~~~~~~~~g~~~v~~ 138 (559)
+||.+++||++++. .-.+|++..|.+..+--+...... . -.++..++..+.+++.++++.+
T Consensus 76 ldh~aslp~~~qkTsf~grvfmth~TkAi~kwllsdyvrvs~~s~~~~Ly~e~dl~~s~dKie~idfhe~~ev~gIkf~p 155 (668)
T KOG1137 76 LDHAASLPFTLQKTSFIGRVFMTHPTKAIYKWLLSDYVRVSNRSGDDRLYTEGDLMESMDKIETIDFHETVEVNGIKFWP 155 (668)
T ss_pred HHHCCCCCCEEEECCCCCEEEEECCHHHHHHHHHHCCEEEEECCCCCCCCCCHHHHHHHHHHEEEEECCCCCCCCEEEEE
T ss_conf 53226662100000225616882441887876642336765135753343510477765532222200233348748996
Q ss_pred EECCCCCCCCCEEEEEECCCEEEECCCCEECCCCCCCCCCCHHH-HHHCCCCCCEEEEECCCCCCCCCCCC--CHHHHHH
Q ss_conf 85567777653567987681799833402467766542389889-98608788299996356457888777--7879999
Q gi|254780869|r 139 VRVNHSIPETMALVIRSPVGNIVHTGDWKLDDDAILGDVTDKDS-LCAIGNEGILALMCDSTNAMREGTCI--SEKGIKK 215 (559)
Q Consensus 139 ~~~~Hsip~a~~~~I~t~~g~i~ytGDfk~d~~p~~g~~~d~~~-l~~~~~~gv~~Li~esT~~~~~~~~~--sE~~v~~ 215 (559)
+.++| +.||++|.++..+-+++|||||--+ -|-+. -+++.+.+.++|+.|||++-.-.... .|..+..
T Consensus 156 ~~aGh-VlgacMf~veiagv~lLyTGd~sre--------eDrhl~aae~P~~~~dvli~estygv~~h~~r~~re~rlt~ 226 (668)
T KOG1137 156 YHAGH-VLGACMFMVEIAGVRLLYTGDYSRE--------EDRHLIAAEMPPTGPDVLITESTYGVQIHEPREEREGRLTW 226 (668)
T ss_pred ECCCH-HHHHEEEEEEECEEEEEECCCCCHH--------HCCCCCCHHCCCCCCCEEEEEEEEEEEECCCHHHHHHHHHH
T ss_conf 04541-2332136665240799962566621--------04233200179998647999732457742716776646656
Q ss_pred HHHHHHHHCCCCEEEEECHHHHHHHHHHHHHHHHH------CCEEEEECHH-HHHH----HHH--------HHHCCCCCC
Q ss_conf 99999862798399994147789999999999871------8869984486-9999----998--------874287677
Q gi|254780869|r 216 NIYDIMKNAKGCVLVTTFSSSVSRIRSIIDIAEQI------GRKIVLLGSS-LKRV----VSV--------AIDVGIIKK 276 (559)
Q Consensus 216 ~i~~~~~~~~grViv~~fasni~Ri~~i~~~a~~~------~R~v~i~Grs-~~~~----~~~--------a~~~g~l~~ 276 (559)
-+-+++.+ .||++++.|| +.|.|+++-+-.++ -|+|.++--| +.+- +++ .++.--+++
T Consensus 227 vIh~~v~r-GGR~L~PvFA--lgrAqELllildeyw~~h~~l~~iPiyyaSslakkcm~vfQtyv~~mnd~Irk~~~~~N 303 (668)
T KOG1137 227 VIHSTVPR-GGRVLIPVFA--LGRAQELLLILDEYWGNHVDLRDIPIYYASSLAKKCMGVFQTYVNMMNDRIRKQSALRN 303 (668)
T ss_pred HHHHHCCC-CCCEEEEEEE--CCHHHHHHHHHHHHHHCCHHHHCCCEEEHHHHHHHHHHHHHEEHHHHHHHHHHHHCCCC
T ss_conf 67765147-9825744341--33689999999998622533303730323468886322674332643214677652479
Q ss_pred CCCCCCHHHHC---CCCCC-CEEEEEECCCCCHHHHHHHHCCCCCCCCCCCCCCEEEEEEECCCCHHHHHHHHHHH---H
Q ss_conf 65422656622---38802-08999966963268898852027776530268966999961588617789999976---5
Q gi|254780869|r 277 DQLFLSDESFG---LYPRE-QLIVIATGSQGEPRSALAQLSRGEMRNVKLAEKDTVIFSSRAIPGNEVAIGHIKNR---L 349 (559)
Q Consensus 277 ~~~~i~~~~~~---~~p~~-~~~ii~TGsqge~~a~l~ria~~~~~~i~l~~~D~vI~ss~~ipGnE~~~~~~~n~---l 349 (559)
+=.|-..+.+. +..++ -.++.+ +.|+..+-|+|= -...+.-.+..+|+..-..+- ++.+..+++. +
T Consensus 304 pfifk~vs~L~~~D~f~D~gP~vv~a--spgmlqsglSRe---lfe~wcsD~kN~vlipGy~Ve--gtlak~il~eP~eI 376 (668)
T KOG1137 304 PFIFKHVSILRTGDWFDDEGPSVVMA--SPGMLQSGLSRE---LFERWCSDSKNAVLIPGYCVE--GTLAKDILSEPKEI 376 (668)
T ss_pred CEEEECCCCCCCCCCCCCCCCCEEEE--CCHHHHHHHHHH---HHHHHCCCCCCCEEECCCEEC--HHHHHHHHCCCHHH
T ss_conf 66841342035632003458703674--745766444088---899757898870774260343--13788886492444
Q ss_pred -HCCCEEEEECCCCCCEECCCCCCHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHH----HCCCC-CEEEECCCEEEE
Q ss_conf -103113430356664131578897899999975495399970457799999998787----44786-315500322789
Q gi|254780869|r 350 -VEQGVRVIAEDAECPVHVSGHPYPNDLKRMYQWIRPQVLVAIHGEPLHLVAHKELAL----QEGIA-CVPPVRNGKMLR 423 (559)
Q Consensus 350 -~~~g~~vi~~~~~~~iH~SGHa~~edl~~li~~ikPk~~IPvHGe~rhl~~h~~la~----~~gv~-~i~l~~NGd~i~ 423 (559)
+-.|-++-....-..+..|.|....+-.++++.++|+++|-||||-.-+..-+.-.. ..+++ .+.-+.|++-++
T Consensus 377 ~a~~G~klp~~m~V~~isFaAhvdy~q~s~fi~~i~~~~lilVHGE~neM~rLKs~L~~~f~d~kv~i~v~tprn~e~v~ 456 (668)
T KOG1137 377 MAMNGRKLPLRMQVEYISFAAHVDYLQNSEFIADITPPHLILVHGEANEMMRLKSALEAAFRDGKVPIDVSTPRNCEDVE 456 (668)
T ss_pred HCCCCCCCCCCCEEEEEEEEECHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHHHCCCCCCCEECCCCCCEEEE
T ss_conf 20368766620158999742102045458999972898299994663266789999998710489861244876544765
Q ss_pred EC
Q ss_conf 73
Q gi|254780869|r 424 LF 425 (559)
Q Consensus 424 l~ 425 (559)
+.
T Consensus 457 l~ 458 (668)
T KOG1137 457 LY 458 (668)
T ss_pred EE
T ss_conf 35
No 8
>KOG1137 consensus
Probab=99.95 E-value=1.9e-29 Score=230.83 Aligned_cols=416 Identities=20% Similarity=0.188 Sum_probs=316.6
Q ss_pred CEEEEEECCCCCCCCCEEEEEEECCCCCCEEEEEECCCCCCCCCCCCEEEECCCHHHHHHHHHCCCEEEEECCCCCCCCC
Q ss_conf 63999940686834660699995177786489997767678887675028707957987664124689960543012160
Q gi|254780869|r 4 EELVFLPLGGVGEIGMNMALYGYGSPSSRKWIMIDCGVSFPKDDLPGVDLVFPDITFIMKERKNLMAIFITHAHEDHYGA 83 (559)
Q Consensus 4 ~~i~~~~lGG~~eiG~N~~~~~~~~~~~~~~iiiD~G~~fp~~~~~gid~iiPd~~~l~~~~~~i~~i~iTH~H~DHiGa 83 (559)
+.|+|.|.+ +|+|+++|+... +-+ ...+++.|-.+++++.+++-..+|++....-..+..-|+.++|+|+||.|+
T Consensus 149 ~gIkf~p~~-aGhVlgacMf~v---eia-gv~lLyTGd~sreeDrhl~aae~P~~~~dvli~estygv~~h~~r~~re~r 223 (668)
T KOG1137 149 NGIKFWPYH-AGHVLGACMFMV---EIA-GVRLLYTGDYSREEDRHLIAAEMPPTGPDVLITESTYGVQIHEPREEREGR 223 (668)
T ss_pred CCEEEEEEC-CCHHHHHEEEEE---EEC-EEEEEECCCCCHHHCCCCCCHHCCCCCCCEEEEEEEEEEEECCCHHHHHHH
T ss_conf 874899604-541233213666---524-079996256662104233200179998647999732457742716776646
Q ss_pred HHHHHHHC--C-----CCEECCHHHHHHHHHHHHHCCCCCCCC---EEEECCCCEEEECCEEEEEEECCCCCCCCCEE--
Q ss_conf 78889862--9-----977929999999999998548865562---25517555577634899998556777765356--
Q gi|254780869|r 84 LHDLWSFL--H-----VPVYASPFAIGLLEAKRVYERVSKKIP---CISFQAGDKVDVGAFSIESVRVNHSIPETMAL-- 151 (559)
Q Consensus 84 lp~l~~~~--~-----~pIY~s~~t~~li~~~~~~~~~~~~~~---~~~i~~~~~~~~g~~~v~~~~~~Hsip~a~~~-- 151 (559)
++++.+.. + +||||.-.+.+|+....++++...+.. +.......+.-.|.|+..+.-++|+|+...+.
T Consensus 224 lt~vIh~~v~rGGR~L~PvFAlgrAqELllildeyw~~h~~l~~iPiyyaSslakkcm~vfQtyv~~mnd~Irk~~~~~N 303 (668)
T KOG1137 224 LTWVIHSTVPRGGRVLIPVFALGRAQELLLILDEYWGNHVDLRDIPIYYASSLAKKCMGVFQTYVNMMNDRIRKQSALRN 303 (668)
T ss_pred HHHHHHHHCCCCCCEEEEEEECCHHHHHHHHHHHHHHCCHHHHCCCEEEHHHHHHHHHHHHHEEHHHHHHHHHHHHCCCC
T ss_conf 65667765147982574434133689999999998622533303730323468886322674332643214677652479
Q ss_pred EEEECCCEEEECCCCEECCCCCCCCCCCHHHHHHCCCCCCEEEEECCCC-CCCCCCCCCHHHHHHHHHH--HHHHCCCC-
Q ss_conf 7987681799833402467766542389889986087882999963564-5788877778799999999--98627983-
Q gi|254780869|r 152 VIRSPVGNIVHTGDWKLDDDAILGDVTDKDSLCAIGNEGILALMCDSTN-AMREGTCISEKGIKKNIYD--IMKNAKGC- 227 (559)
Q Consensus 152 ~I~t~~g~i~ytGDfk~d~~p~~g~~~d~~~l~~~~~~gv~~Li~esT~-~~~~~~~~sE~~v~~~i~~--~~~~~~gr- 227 (559)
-+-+..+++++++||..|..|..+..++=.....+.++++..+.+|++| +-.+|++-++.-+++.+.+ -+...+|+
T Consensus 304 pfifk~vs~L~~~D~f~D~gP~vv~aspgmlqsglSRelfe~wcsD~kN~vlipGy~Vegtlak~il~eP~eI~a~~G~k 383 (668)
T KOG1137 304 PFIFKHVSILRTGDWFDDEGPSVVMASPGMLQSGLSRELFERWCSDSKNAVLIPGYCVEGTLAKDILSEPKEIMAMNGRK 383 (668)
T ss_pred CEEEECCCCCCCCCCCCCCCCCEEEECCHHHHHHHHHHHHHHHCCCCCCCEEECCCEECHHHHHHHHCCCHHHHCCCCCC
T ss_conf 66841342035632003458703674745766444088899757898870774260343137888864924442036876
Q ss_pred ------EEEEECHHHHHHHHHHHHHHHHHCCEEEEE-C-----HHHHHHHHHHHHCCCCCC-CCCCCCHHHHCCCCCCCE
Q ss_conf ------999941477899999999998718869984-4-----869999998874287677-654226566223880208
Q gi|254780869|r 228 ------VLVTTFSSSVSRIRSIIDIAEQIGRKIVLL-G-----SSLKRVVSVAIDVGIIKK-DQLFLSDESFGLYPREQL 294 (559)
Q Consensus 228 ------Viv~~fasni~Ri~~i~~~a~~~~R~v~i~-G-----rs~~~~~~~a~~~g~l~~-~~~~i~~~~~~~~p~~~~ 294 (559)
|.-..||+|+++.|+.--++.-++++++++ | -+++..+..+.+.|-.+. ......-+++..+-+.+.
T Consensus 384 lp~~m~V~~isFaAhvdy~q~s~fi~~i~~~~lilVHGE~neM~rLKs~L~~~f~d~kv~i~v~tprn~e~v~l~f~~ek 463 (668)
T KOG1137 384 LPLRMQVEYISFAAHVDYLQNSEFIADITPPHLILVHGEANEMMRLKSALEAAFRDGKVPIDVSTPRNCEDVELYFPGEK 463 (668)
T ss_pred CCCCCEEEEEEEEECHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHHHCCCCCCCEECCCCCCEEEEEECCCCH
T ss_conf 66201589997421020454589999728982999946632667899999987104898612448765447653557541
Q ss_pred EEEEECCCCC-H---HHHHHHHCCCCCCCCCCCCCCEEEEE-EECCCCHHHHHHHHHHHHHCCCEEEEECCCCCCEECCC
Q ss_conf 9999669632-6---88988520277765302689669999-61588617789999976510311343035666413157
Q gi|254780869|r 295 IVIATGSQGE-P---RSALAQLSRGEMRNVKLAEKDTVIFS-SRAIPGNEVAIGHIKNRLVEQGVRVIAEDAECPVHVSG 369 (559)
Q Consensus 295 ~ii~TGsqge-~---~a~l~ria~~~~~~i~l~~~D~vI~s-s~~ipGnE~~~~~~~n~l~~~g~~vi~~~~~~~iH~SG 369 (559)
++.++|+|.| | +.+..-+.++..-.| +.+.|...|| .+++|+||+.+.++.+.+...+.+++.. ..+..|+|+
T Consensus 464 lak~~G~~a~~p~~~~~sgiLv~~~~~~~i-ls~edL~~ys~l~~~~~~erq~i~~~~~~~li~~~l~~~-~~e~~e~s~ 541 (668)
T KOG1137 464 LAKTTGSLAEVPKEDRVSGILVSYGFSYAI-LSPEDLILYSDLKTIPLNERQVIPYMGRIALIGPNLIQG-KNEMLETSK 541 (668)
T ss_pred HHHHHHCCCCCCCCCEEEEEEEECCCCEEE-CCHHHHHHHHHHEEEECCCEEEEECCCCHHHHHHHHHHC-CHHHHHCCC
T ss_conf 212121103477664477899734874354-168996443431342212157886146387654689853-066631036
Q ss_pred -CCCHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHCCCCCEEEECCCEEEEECCCCE
Q ss_conf -889789999997549539997045779999999878744786315500322789738970
Q gi|254780869|r 370 -HPYPNDLKRMYQWIRPQVLVAIHGEPLHLVAHKELALQEGIACVPPVRNGKMLRLFPDPI 429 (559)
Q Consensus 370 -Ha~~edl~~li~~ikPk~~IPvHGe~rhl~~h~~la~~~gv~~i~l~~NGd~i~l~~~~~ 429 (559)
||++-.+ .+..++|+.+ |||+||--...|-.+|.+.+.-..-+-.+-..+++...+.
T Consensus 542 ~~a~~v~~--vi~v~~~q~~-~ivlEw~~~~~~D~~adSi~~~il~v~~~pks~kl~~~k~ 599 (668)
T KOG1137 542 KHAYRVEL--VIKVVKPQEF-PIVLEWLSNPENDMLADSIGARILTVSLSPKSVKLMVDKC 599 (668)
T ss_pred CCCEEEEE--EEEEECCCCC-EEEEEECCCCHHHHHHHHHHHEEEECCCCCCCEEEEECCC
T ss_conf 75268776--7999605774-4899960572034667655421451135775167200356
No 9
>PRK00055 ribonuclease Z; Reviewed
Probab=99.84 E-value=4.1e-19 Score=156.52 Aligned_cols=214 Identities=21% Similarity=0.252 Sum_probs=134.5
Q ss_pred EEEEEECCCCC-CCCC--EEEEEEECCCCCCEEEEEECCCCCCCCCCCCEEEECCCHHHHHHH--HHCCCEEEEECCCCC
Q ss_conf 39999406868-3466--069999517778648999776767888767502870795798766--412468996054301
Q gi|254780869|r 5 ELVFLPLGGVG-EIGM--NMALYGYGSPSSRKWIMIDCGVSFPKDDLPGVDLVFPDITFIMKE--RKNLMAIFITHAHED 79 (559)
Q Consensus 5 ~i~~~~lGG~~-eiG~--N~~~~~~~~~~~~~~iiiD~G~~fp~~~~~gid~iiPd~~~l~~~--~~~i~~i~iTH~H~D 79 (559)
+|.|+--||.- ..++ +|+++++ ++..||||||-+... +.++.+ ..++++|||||.|.|
T Consensus 3 kit~LGtg~~~p~~~R~~s~~li~~----~~~~iliD~G~G~~~-------------~l~~~~~~~~~l~~I~iTH~H~D 65 (259)
T PRK00055 3 ELTFLGTGSGVPTPTRNVSSILLRL----GGELWLFDCGEGTQR-------------QMLRAGIGPRKIDRIFITHLHGD 65 (259)
T ss_pred EEEEEECCCCCCCCCCCCCEEEEEE----CCEEEEEECCCHHHH-------------HHHHCCCCHHHCCEEEEECCCHH
T ss_conf 8999906899889999648899999----990899958815999-------------99981999557658999643357
Q ss_pred CCCCHHHHHHHC-------CCCEECCHHHHHHHHHHHHHCCCCCCCC--EEE---ECCCCEEEECCEEEEEEECCCCCCC
Q ss_conf 216078889862-------9977929999999999998548865562--255---1755557763489999855677776
Q gi|254780869|r 80 HYGALHDLWSFL-------HVPVYASPFAIGLLEAKRVYERVSKKIP--CIS---FQAGDKVDVGAFSIESVRVNHSIPE 147 (559)
Q Consensus 80 HiGalp~l~~~~-------~~pIY~s~~t~~li~~~~~~~~~~~~~~--~~~---i~~~~~~~~g~~~v~~~~~~Hsip~ 147 (559)
|+.+||.|+... .++||+++.+...++..+........++ ..+ ..++..++.|+++|+++++.|+.|
T Consensus 66 H~~Gl~~ll~~~~~~~~~~~l~i~gp~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~H~~~- 144 (259)
T PRK00055 66 HIFGLPGLLSTRSLSGRTEPLTIYGPKGIKEFVETLLRASGSHLPYRIAIHEIDEKTEGVVFDDDGFTVTAFPLDHSIP- 144 (259)
T ss_pred HHCHHHHHHHHHHHCCCCCCEEEEECHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCEEEECCCEEEEEEECCCCCC-
T ss_conf 6652899999987459997169991778999999998850668897256763257987328964998999998679986-
Q ss_pred CCEEEEEECCCEEEECCCCEECCCCCCCCCCCHHHHHHCCCCCCEEEEECCCCCCCCCCCC---CHHHHHHHHHHHHHHC
Q ss_conf 5356798768179983340246776654238988998608788299996356457888777---7879999999998627
Q gi|254780869|r 148 TMALVIRSPVGNIVHTGDWKLDDDAILGDVTDKDSLCAIGNEGILALMCDSTNAMREGTCI---SEKGIKKNIYDIMKNA 224 (559)
Q Consensus 148 a~~~~I~t~~g~i~ytGDfk~d~~p~~g~~~d~~~l~~~~~~gv~~Li~esT~~~~~~~~~---sE~~v~~~i~~~~~~~ 224 (559)
|+||.|+.++++++|+||-+. + +.+.++. +|+|+||+|+|+.+...... -.+.+.+.. ++.+++
T Consensus 145 s~Gyri~~~g~~i~ysgDt~~---------~--~~l~~~~-~gaDlLI~ea~~~~~~~~~~~~~~Hst~~~a~-~~a~~~ 211 (259)
T PRK00055 145 CLGYRFEEKGRKIAYVGDTRP---------C--EALVELA-KGADLLVHEATFGDEDEAKAKEHYHSTAKQAA-EIAKEA 211 (259)
T ss_pred EEEEEEEECCCEEEEECCCCC---------C--HHHHHHH-CCCCEEEEECCCCCCCHHHCCCCCCCCHHHHH-HHHHHC
T ss_conf 279999968816999527886---------8--8899886-06999999465577422441377668999999-999984
Q ss_pred C-CCEEEEECHHHH--HHHHHHHHHHHH
Q ss_conf 9-839999414778--999999999987
Q gi|254780869|r 225 K-GCVLVTTFSSSV--SRIRSIIDIAEQ 249 (559)
Q Consensus 225 ~-grViv~~fasni--~Ri~~i~~~a~~ 249 (559)
+ .+.+++=|+... .....+.+-|++
T Consensus 212 ~~k~lvLtH~~p~~~~~~~~~~~~e~~~ 239 (259)
T PRK00055 212 GVKRLILTHFSPRYTDPEELQLLKEARE 239 (259)
T ss_pred CCCEEEEEEECCCCCCCHHHHHHHHHHH
T ss_conf 9999999920778898249999999998
No 10
>KOG1361 consensus
Probab=99.80 E-value=7.6e-18 Score=147.37 Aligned_cols=298 Identities=21% Similarity=0.311 Sum_probs=191.0
Q ss_pred CCCEEEEECCCCCCCCCHHHHHHHCCCCEECCHHHHHHHHHHHHHCCCCCCCCEEEECCCCEEEECCEEEEEEECCCCCC
Q ss_conf 24689960543012160788898629977929999999999998548865562255175555776348999985567777
Q gi|254780869|r 67 NLMAIFITHAHEDHYGALHDLWSFLHVPVYASPFAIGLLEAKRVYERVSKKIPCISFQAGDKVDVGAFSIESVRVNHSIP 146 (559)
Q Consensus 67 ~i~~i~iTH~H~DHiGalp~l~~~~~~pIY~s~~t~~li~~~~~~~~~~~~~~~~~i~~~~~~~~g~~~v~~~~~~Hsip 146 (559)
...+-|+||.|.||..+|.--|.. -|+|+++.|+.++..++. .....++.++.++++.+-.+.|+.++++| -|
T Consensus 112 ~~s~yFLsHFHSDHy~GL~~sW~~--p~lYCS~ita~Lv~~~~~----v~~~~i~~l~l~~~~~i~~~~vt~ldAnH-CP 184 (481)
T KOG1361 112 GCSAYFLSHFHSDHYIGLTKSWSH--PPLYCSPITARLVPLKVS----VTKQSIQALDLNQPLEIPGIQVTLLDANH-CP 184 (481)
T ss_pred CCCEEEEECCCCCCCCCCCCCCCC--CCCCCCCCCHHHHHHHCC----CCHHHCEEECCCCCEEECCEEEEEECCCC-CC
T ss_conf 511012201455431435444558--861014122655544011----47411413147883662456899851666-99
Q ss_pred CCCEEEEEECCC-EEEECCCCEECCCCCCCCCCCHHH-HHHCCCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHC
Q ss_conf 653567987681-799833402467766542389889-986087882999963564578887777879999999998627
Q gi|254780869|r 147 ETMALVIRSPVG-NIVHTGDWKLDDDAILGDVTDKDS-LCAIGNEGILALMCDSTNAMREGTCISEKGIKKNIYDIMKNA 224 (559)
Q Consensus 147 ~a~~~~I~t~~g-~i~ytGDfk~d~~p~~g~~~d~~~-l~~~~~~gv~~Li~esT~~~~~~~~~sE~~v~~~i~~~~~~~ 224 (559)
||++|.++...| .++||||||.+.. ... ......+.++.+-.|.||++..-..+|..++.....+++...
T Consensus 185 Ga~mf~F~~~~~~~~lhtGDFR~s~~--------m~~~p~~~~~~~i~~lyLDtTycnp~y~Fpsq~esvq~v~~~i~~~ 256 (481)
T KOG1361 185 GAVMFLFELSFGPCILHTGDFRASAD--------MSKEPALTLEQTIDILYLDTTYCNPKYDFPSQEESVQEVVDVIRSH 256 (481)
T ss_pred CCEEEEEECCCCCEEEECCCCCCCHH--------HHHCHHHHCCCCCCEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHH
T ss_conf 85589753478862786477313865--------6319687658764658875010177778855788999999999755
Q ss_pred -----CCCEEEEECHHHHHHHHHHHHHHHHHCCEEEEECHHHHHHHHHHHHCCCCCCCCCCCCHHHHCCCCCCCEEEEEE
Q ss_conf -----983999941477899999999998718869984486999999887428767765422656622388020899996
Q gi|254780869|r 225 -----KGCVLVTTFSSSVSRIRSIIDIAEQIGRKIVLLGSSLKRVVSVAIDVGIIKKDQLFLSDESFGLYPREQLIVIAT 299 (559)
Q Consensus 225 -----~grViv~~fasni~Ri~~i~~~a~~~~R~v~i~Grs~~~~~~~a~~~g~l~~~~~~i~~~~~~~~p~~~~~ii~T 299 (559)
+-.++|+||+ +++-.-..++|++.+.+|++.- +.+.+..-+| ......+.. . +.....+-++..
T Consensus 257 ~~~~~~~Li~v~~ys--iGkE~l~~eia~~l~~kI~v~~----~~~~~~~~lg-~~d~~~~~s-~---d~~~ssvhv~~~ 325 (481)
T KOG1361 257 ASKNDRVLIVVGTYS--IGKEKLLLEIARILNSKIWVEP----RRLRLLQCLG-FDDESKLLS-I---DVDESSVHVVPM 325 (481)
T ss_pred HHHCCCEEEEEEEEE--CCHHHHHHHHHHHHCCCEEEEH----HHCHHHHHCC-CCCHHHHHC-C---CCCCCCEEEEEH
T ss_conf 540774279998875--1405799999998588358843----1011435348-887024430-3---666682567304
Q ss_pred CCCCCHHHHHHHHCCCCCCCCCCCCC--CEEEEEEECCCCHHHH--HHHHH-HHHHCCCEEEEECCCCCCEECCCCCCHH
Q ss_conf 69632688988520277765302689--6699996158861778--99999-7651031134303566641315788978
Q gi|254780869|r 300 GSQGEPRSALAQLSRGEMRNVKLAEK--DTVIFSSRAIPGNEVA--IGHIK-NRLVEQGVRVIAEDAECPVHVSGHPYPN 374 (559)
Q Consensus 300 Gsqge~~a~l~ria~~~~~~i~l~~~--D~vI~ss~~ipGnE~~--~~~~~-n~l~~~g~~vi~~~~~~~iH~SGHa~~e 374 (559)
. .++.+-.-........++ +++-|++. |.+.. +..-. |.-...|-++. ...++-|-|-+..
T Consensus 326 ~-------~l~~~~~l~~~~~~~~~~~s~~v~~~~t---gwt~~~~~s~~~~~~~~~~~~~i~----~~~vpYseHSs~~ 391 (481)
T KOG1361 326 N-------SLASSPSLKEYESQYEDGYSKLVGFSPT---GWTKGKLVSLDKENSRPQSGSKIP----ISLVPYSEHSSYT 391 (481)
T ss_pred H-------HHCCCCCHHHHHCCCCCCCCEEEEECCC---CCCCCCCCCCCCCCCCCCCCCCCC----CCCCCCCCCCCHH
T ss_conf 3-------4336651101002045676516764344---221244111372112111146354----0011103457888
Q ss_pred HHHHHHHHCCCCEEEEECCCHHHHHHHHHH
Q ss_conf 999999754953999704577999999987
Q gi|254780869|r 375 DLKRMYQWIRPQVLVAIHGEPLHLVAHKEL 404 (559)
Q Consensus 375 dl~~li~~ikPk~~IPvHGe~rhl~~h~~l 404 (559)
||.++++.+||+.+||.=++..-+..-.+.
T Consensus 392 el~~f~~~lk~k~iiptv~~~~~~~~~~~~ 421 (481)
T KOG1361 392 ELSEFLSKLKPKTIIPTVNEDTELSDATEV 421 (481)
T ss_pred HHHHHHHHCCCCEEECCCCCCCCCCCHHHH
T ss_conf 999999862887063676678521441222
No 11
>PRK02113 putative hydrolase; Provisional
Probab=99.79 E-value=4e-17 Score=142.15 Aligned_cols=177 Identities=22% Similarity=0.361 Sum_probs=129.2
Q ss_pred CCCEEEEEECCCCCCCCCCCCEEEECCCH--HHHHHHHHCCCEEEEECCCCCCCCCHHHHHHH---CCCCEECCHHHHHH
Q ss_conf 78648999776767888767502870795--79876641246899605430121607888986---29977929999999
Q gi|254780869|r 30 SSRKWIMIDCGVSFPKDDLPGVDLVFPDI--TFIMKERKNLMAIFITHAHEDHYGALHDLWSF---LHVPVYASPFAIGL 104 (559)
Q Consensus 30 ~~~~~iiiD~G~~fp~~~~~gid~iiPd~--~~l~~~~~~i~~i~iTH~H~DHiGalp~l~~~---~~~pIY~s~~t~~l 104 (559)
.++..+||||| ||+ +.+..+.++|+|||+||+|.||++||..|... -.+|||+++.|..-
T Consensus 42 ~~~~~iLID~g---------------pD~r~Q~lr~~i~~iDavllTH~H~DHi~GlddLR~f~~~~~ipvy~~~~t~~~ 106 (252)
T PRK02113 42 TEGARILIDCG---------------PDFREQMLRLPFGKIDAVLITHEHYDHVGGLDDLRPFCRFGEVPIYAEQYVAER 106 (252)
T ss_pred ECCCEEEEECC---------------CCHHHHHHHCCCCCCCEEEEECCCHHHHCCHHHHHHHHCCCCCCEEECHHHHHH
T ss_conf 89927999689---------------138999987798761489997457044269899998854587446657899999
Q ss_pred HHHHHHH----CCC--CCCCCEEEECCCCEEEECCEEEEEEECCCCCCCCCEEEEEECCCEEEECCCCEECCCCCCCCCC
Q ss_conf 9999985----488--6556225517555577634899998556777765356798768179983340246776654238
Q gi|254780869|r 105 LEAKRVY----ERV--SKKIPCISFQAGDKVDVGAFSIESVRVNHSIPETMALVIRSPVGNIVHTGDWKLDDDAILGDVT 178 (559)
Q Consensus 105 i~~~~~~----~~~--~~~~~~~~i~~~~~~~~g~~~v~~~~~~Hsip~a~~~~I~t~~g~i~ytGDfk~d~~p~~g~~~ 178 (559)
++.++.. ... .+...++++.+++++++++++|+++++.|+-..++||.| |++.|..|.+. .
T Consensus 107 l~~~~~y~f~~~~~~~~~~l~~~~i~~~~~f~i~~~~v~p~~v~Hg~~~~~G~ri----g~~aY~tD~~~---------i 173 (252)
T PRK02113 107 LRSRMPYCFVEHSYPGVPNIPLREIEPDRPFLVNHTEVTPLRVMHGKLPILGYRI----GKMAYITDMLT---------M 173 (252)
T ss_pred HHHHCHHHHCCCCCCCCCCCEEEEECCCCCEEECEEEEEEEEECCCCCEECCEEC----CCEEEECCCCC---------C
T ss_conf 9863311214688888656315771599946742079987850688821644750----44699378765---------7
Q ss_pred CHHHHHHCCCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECHHHHHH
Q ss_conf 9889986087882999963564578887777879999999998627983999941477899
Q gi|254780869|r 179 DKDSLCAIGNEGILALMCDSTNAMREGTCISEKGIKKNIYDIMKNAKGCVLVTTFSSSVSR 239 (559)
Q Consensus 179 d~~~l~~~~~~gv~~Li~esT~~~~~~~~~sE~~v~~~i~~~~~~~~grViv~~fasni~R 239 (559)
..+.+..+ +|+|+|+.|++. +..-+|...+.++++-+=+=...|++++=++.+++.
T Consensus 174 p~~~~~~L--~~~D~liid~l~---~~~h~sH~~~~eal~~~~~i~pkr~~ltH~sH~~~~ 229 (252)
T PRK02113 174 PEEEYEQL--QGIDVLVMNALR---IAPHPTHQSLEEALENIKRIGAKETYLIHMSHHIGL 229 (252)
T ss_pred CHHHHHHH--CCCCEEEEECCC---CCCCCCCCCHHHHHHHHHHHCCCEEEEECCCCCCCH
T ss_conf 98999975--358857874356---799999789999999999709982999898898626
No 12
>PRK11244 phnP carbon-phosphorus lyase complex accessory protein; Provisional
Probab=99.75 E-value=1.2e-16 Score=138.66 Aligned_cols=180 Identities=19% Similarity=0.206 Sum_probs=123.3
Q ss_pred CCCEEEEEECCCCCCCCCCCCEEEECCCHHHHHHHHHCCCEEEEECCCCCCCCCHHHHHH--HCCCCEECCHHHHHHHHH
Q ss_conf 786489997767678887675028707957987664124689960543012160788898--629977929999999999
Q gi|254780869|r 30 SSRKWIMIDCGVSFPKDDLPGVDLVFPDITFIMKERKNLMAIFITHAHEDHYGALHDLWS--FLHVPVYASPFAIGLLEA 107 (559)
Q Consensus 30 ~~~~~iiiD~G~~fp~~~~~gid~iiPd~~~l~~~~~~i~~i~iTH~H~DHiGalp~l~~--~~~~pIY~s~~t~~li~~ 107 (559)
.++.-++||||. ||+.. .-...+|+|||+||+|.||+++|..|.- .-.+|||+++-+..+. .
T Consensus 44 ~~~~~iLID~g~--------------~dl~~-~~~~~~iDaVllTH~H~DHi~GlddlR~~~~~~ipvy~~~~~~~~~-~ 107 (250)
T PRK11244 44 FNGARTLIDAGL--------------HDLAE-RFPPGSLQAFLLTHYHMDHVQGLFPLRWGVGDVIPVYGPPDPEGCD-D 107 (250)
T ss_pred ECCEEEEEECCC--------------HHHHH-HCCCCCCCEEEEECCCHHHHCCHHHHHHCCCCCEEEEECCCHHHHH-H
T ss_conf 899279998980--------------89997-5555687789982575334337688871379835677377577899-9
Q ss_pred HHHHCCCCCCCCEEEECCCCEEEECCEEEEEEECCCCCCCCCEEEEEECCCEEEECCCCEECCCCCCCCCCCHHHHHHCC
Q ss_conf 99854886556225517555577634899998556777765356798768179983340246776654238988998608
Q gi|254780869|r 108 KRVYERVSKKIPCISFQAGDKVDVGAFSIESVRVNHSIPETMALVIRSPVGNIVHTGDWKLDDDAILGDVTDKDSLCAIG 187 (559)
Q Consensus 108 ~~~~~~~~~~~~~~~i~~~~~~~~g~~~v~~~~~~Hsip~a~~~~I~t~~g~i~ytGDfk~d~~p~~g~~~d~~~l~~~~ 187 (559)
.+...+... . -..+.+.+++++++++|+++++.|+-+ ++||.|+.++++++|++|.+. ...+.+..+.
T Consensus 108 l~~~~~~~~-~-~~~~~~~~~~~i~g~~itp~~~~Hg~~-~~Gy~i~~~g~~~aY~tD~~~---------ipe~~~~~L~ 175 (250)
T PRK11244 108 LFKHPGILD-F-SHPLEAFEPFDLGGLQVTPLPLNHSKL-TFGYLLETAHSRFAYLTDTVG---------LPEDTAKFLR 175 (250)
T ss_pred HHHCCCCCC-C-CCCCCCCCCEEECCEEEEEEEECCCCC-CEEEEEECCCCEEEEECCCCC---------CCHHHHHHHH
T ss_conf 850788434-2-366588886686883899999778897-369999648932999667787---------7999999986
Q ss_pred CCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHH-CCCCEEEEECHHHHH
Q ss_conf 788299996356457888777787999999999862-798399994147789
Q gi|254780869|r 188 NEGILALMCDSTNAMREGTCISEKGIKKNIYDIMKN-AKGCVLVTTFSSSVS 238 (559)
Q Consensus 188 ~~gv~~Li~esT~~~~~~~~~sE~~v~~~i~~~~~~-~~grViv~~fasni~ 238 (559)
..|+|+|+.|.|+..++....|...+.++++ .++. ...|.+++=++.+++
T Consensus 176 ~~~ld~lv~d~~~~~~~~~~~sH~~~~~ale-~i~~l~pkr~~lTH~sh~~d 226 (250)
T PRK11244 176 NNQPDLLVLDCSHPPQEDAPRNHNDLTTALA-IIEVLRPPRVILTHISHQLD 226 (250)
T ss_pred CCCCCEEEECCCCCCCCCCCCCCCCHHHHHH-HHHHHCCCEEEEECCCCCCC
T ss_conf 1899899986887887887988799999999-99972998799989667763
No 13
>TIGR02651 RNase_Z ribonuclease Z; InterPro: IPR013471 All tRNA molecules are synthesised as long precursors with extra sequence at both the 5' and 3' ends, which undergo several processing steps to form the mature tRNA molecule. In many bacteria the tRNA precursors do not contain the CCA sequence which forms the 3' end of the mature tRNA and is essential for aminoacylation. In these organisms ribonucleotide Z cleaves the precursor to form a 3' end to which CCA is added. Species where all tRNA sequences already have the CCA tail, such as E. coli, do not generally posses this form of ribonuclease Z. ; GO: 0016891 endoribonuclease activity producing 5'-phosphomonoesters, 0042779 removal of tRNA 3'-trailer sequence.
Probab=99.75 E-value=1.5e-16 Score=138.12 Aligned_cols=136 Identities=22% Similarity=0.332 Sum_probs=92.6
Q ss_pred EEEEEECCCC-CCCCCE--EEEEEECCCCCCEEEEEECCCCCCCCCCCCEEEECCCHHHHHHH--HHCCCEEEEECCCCC
Q ss_conf 3999940686-834660--69999517778648999776767888767502870795798766--412468996054301
Q gi|254780869|r 5 ELVFLPLGGV-GEIGMN--MALYGYGSPSSRKWIMIDCGVSFPKDDLPGVDLVFPDITFIMKE--RKNLMAIFITHAHED 79 (559)
Q Consensus 5 ~i~~~~lGG~-~eiG~N--~~~~~~~~~~~~~~iiiD~G~~fp~~~~~gid~iiPd~~~l~~~--~~~i~~i~iTH~H~D 79 (559)
+|.|+--||. =.-.|| +.++.+..|. ++.+|||||=+ .+- +-+..+ ..+|+-|||||.|-|
T Consensus 1 ~i~fLGTGg~~Pt~~Rn~~si~l~~~~e~-g~~~LFDCGEG----TQ~---------Q~~~~~~~~~~i~~IFITH~HGD 66 (327)
T TIGR02651 1 EITFLGTGGGVPTKERNVSSIALKLEDER-GELWLFDCGEG----TQR---------QMLRSGISPMKIDRIFITHLHGD 66 (327)
T ss_pred CEEEEECCCCCCCCCCCCCEEEEECHHHC-CCEEEEECCCH----HHH---------HHHHCCCCCCCCCEEEEECCCHH
T ss_conf 95898527788775647758999602242-87425547718----999---------99971688631113687066314
Q ss_pred CCCCHHHHHHHCC---------CCEECCHHHHHHHHHHHHHCCC--CCCCCEEEECCCC-----------------EEEE
Q ss_conf 2160788898629---------9779299999999999985488--6556225517555-----------------5776
Q gi|254780869|r 80 HYGALHDLWSFLH---------VPVYASPFAIGLLEAKRVYERV--SKKIPCISFQAGD-----------------KVDV 131 (559)
Q Consensus 80 HiGalp~l~~~~~---------~pIY~s~~t~~li~~~~~~~~~--~~~~~~~~i~~~~-----------------~~~~ 131 (559)
||-|||-|+..+. +-||+++.+.++++.-+..... ..++.++++.++. .++.
T Consensus 67 Hi~GLPGLl~t~sf~G~~r~~pL~IyGP~G~~e~~~~~l~~~~~~~~y~i~~~E~~~~~~~P~~~~~k~k~l~~~~~~~~ 146 (327)
T TIGR02651 67 HILGLPGLLSTMSFQGGGRKEPLTIYGPPGIKEFIETSLRVSYTYLNYPIKIHEIEEKGVLPEFVVYKEKLLEDGLVFED 146 (327)
T ss_pred HHHHHHHHHHHHCCCCCCCCCCEEEECCHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCHHHHHCCCEEECCEEEEC
T ss_conf 55423688883103788864452886874479999999986223788415999726899773123102561202326765
Q ss_pred CCEEEEEEECCCCCCCCCEEEEEE
Q ss_conf 348999985567777653567987
Q gi|254780869|r 132 GAFSIESVRVNHSIPETMALVIRS 155 (559)
Q Consensus 132 g~~~v~~~~~~Hsip~a~~~~I~t 155 (559)
+.|+|+.+++.|+|| |+||.|+-
T Consensus 147 ~~f~v~~~~l~H~~~-~~GY~~~E 169 (327)
T TIGR02651 147 DGFKVEAFPLDHSIP-SLGYRFEE 169 (327)
T ss_pred CCEEEEEEECCCCCE-EEEEEEEE
T ss_conf 844899995057841-46789986
No 14
>TIGR03307 PhnP phosphonate metabolism protein PhnP. This family of proteins found in operons encoding phosphonate C-P lyase systems as is observed in E. coli and is a member of the metallo-beta-lactamase superfamily (pfam00753). As defined by this model, all instances of this protein are associated with the C-P lyase, but not all genomes containing the C-P lyase system contain phnP.
Probab=99.74 E-value=3.5e-16 Score=135.38 Aligned_cols=181 Identities=19% Similarity=0.215 Sum_probs=123.4
Q ss_pred CCCEEEEEECCCCCCCCCCCCEEEECCCHHHHHHHHHCCCEEEEECCCCCCCCCHHHHHHH--CCCCEECCHHHHHHHHH
Q ss_conf 7864899977676788876750287079579876641246899605430121607888986--29977929999999999
Q gi|254780869|r 30 SSRKWIMIDCGVSFPKDDLPGVDLVFPDITFIMKERKNLMAIFITHAHEDHYGALHDLWSF--LHVPVYASPFAIGLLEA 107 (559)
Q Consensus 30 ~~~~~iiiD~G~~fp~~~~~gid~iiPd~~~l~~~~~~i~~i~iTH~H~DHiGalp~l~~~--~~~pIY~s~~t~~li~~ 107 (559)
.++.-||||||. ||+.. +-...+|+|||+||+|.||++||.-|.-. -.+|||+++-+..+ ..
T Consensus 44 ~~~~~iLID~g~--------------pdlr~-ql~~~~IdaVllTH~H~DHi~GlddlR~~~~~~ipvy~~~~~~~~-~~ 107 (249)
T TIGR03307 44 VNGVRTLIDAGL--------------TDLAE-RFPPGSLQAILLTHYHMDHVQGLFPLRWGMGEPIPVYGPPDPEGC-DD 107 (249)
T ss_pred ECCCEEEEECCC--------------HHHHH-HCCCCCCCEEEEECCCHHHHCCCHHHHHCCCCCEEEEECCCHHHH-HH
T ss_conf 899289998997--------------79998-605168788999653345446624455216886578868878899-99
Q ss_pred HHHHCCCCCCCCEEEECCCCEEEECCEEEEEEECCCCCCCCCEEEEEECCCEEEECCCCEECCCCCCCCCCCHHHHHHCC
Q ss_conf 99854886556225517555577634899998556777765356798768179983340246776654238988998608
Q gi|254780869|r 108 KRVYERVSKKIPCISFQAGDKVDVGAFSIESVRVNHSIPETMALVIRSPVGNIVHTGDWKLDDDAILGDVTDKDSLCAIG 187 (559)
Q Consensus 108 ~~~~~~~~~~~~~~~i~~~~~~~~g~~~v~~~~~~Hsip~a~~~~I~t~~g~i~ytGDfk~d~~p~~g~~~d~~~l~~~~ 187 (559)
.+....... . -.++.+.+++++++++|+++++.|+.+ ++||.|+.++++++|++|-+. ...+.+..+.
T Consensus 108 ~~~~~~~~~-~-~~~~~~~~~~~i~g~~i~p~~~~H~~~-~~Gy~i~~~g~~~aY~tD~~~---------ip~es~~~L~ 175 (249)
T TIGR03307 108 LFKHPGILD-F-SKPLLAFEPFHLGGLRVTPVPLVHSKL-TFGYLLETDGQRLAYLTDTAG---------LPPDTEAFLK 175 (249)
T ss_pred HHCCCCCCC-C-CCCCCCCCCEEECCEEEEEEEEECCCC-CEEEEEECCCCEEEEECCCCC---------CCHHHHHHHC
T ss_conf 862698424-3-465479896773981899999960786-469999518955999678887---------7989999972
Q ss_pred CCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHC-CCCEEEEECHHHHHH
Q ss_conf 7882999963564578887777879999999998627-983999941477899
Q gi|254780869|r 188 NEGILALMCDSTNAMREGTCISEKGIKKNIYDIMKNA-KGCVLVTTFSSSVSR 239 (559)
Q Consensus 188 ~~gv~~Li~esT~~~~~~~~~sE~~v~~~i~~~~~~~-~grViv~~fasni~R 239 (559)
..++|+|+.|.++..++..-++...+.++++ +++.. .+|.+++=++.+++-
T Consensus 176 ~~~lD~li~d~~~~~~~~~~~sH~~~~eale-~~~~l~pkr~~lTHmsh~ld~ 227 (249)
T TIGR03307 176 NHPLDLLILDCSHPPQEDAPRNHNDLTRALA-IYEQLRPKQLILTHISHQLDA 227 (249)
T ss_pred CCCCCEEEECCCCCCCCCCCCCCCCHHHHHH-HHHHHCCCEEEEECCCCCCCH
T ss_conf 8998889962787776788888789999999-999719984999898857446
No 15
>PRK02126 ribonuclease Z; Provisional
Probab=99.70 E-value=1.5e-15 Score=130.83 Aligned_cols=122 Identities=18% Similarity=0.287 Sum_probs=81.6
Q ss_pred CCEEEEEEECCCCCCEEEEEECCCCCCCCCCCCEEEECCCHHHHHHHHHCCCEEEEECCCCCCCCCHHHHHHHC-----C
Q ss_conf 66069999517778648999776767888767502870795798766412468996054301216078889862-----9
Q gi|254780869|r 18 GMNMALYGYGSPSSRKWIMIDCGVSFPKDDLPGVDLVFPDITFIMKERKNLMAIFITHAHEDHYGALHDLWSFL-----H 92 (559)
Q Consensus 18 G~N~~~~~~~~~~~~~~iiiD~G~~fp~~~~~gid~iiPd~~~l~~~~~~i~~i~iTH~H~DHiGalp~l~~~~-----~ 92 (559)
|-++..+.+- ..++.+|+|||=. .. +|- ....+|+.|||||.|.||+-|+|.|++.. .
T Consensus 15 ~Dp~l~v~~~--~~~~~lLfDcGe~----~~------l~~-----~~l~~Id~IFITHlHgDH~~GL~gLLr~~~gr~~~ 77 (334)
T PRK02126 15 DDPGLYVDFL--FERRALLFDLGDL----HH------LPP-----RELLRISHIFVSHTHMDHFIGFDRLLRLCLGRPRR 77 (334)
T ss_pred CCCEEEEEEC--CCCCEEEEECCCC----CC------CCH-----HHHCCCCEEEEECCCCCHHCCCHHHHHHHCCCCCC
T ss_conf 9987999716--7981899989984----30------064-----56465476998267622123579999862799986
Q ss_pred CCEECCHHHHHHHHHHHHHC--C----CCCCCCEEEEC----------------------------CCCEEEECCEEEEE
Q ss_conf 97792999999999999854--8----86556225517----------------------------55557763489999
Q gi|254780869|r 93 VPVYASPFAIGLLEAKRVYE--R----VSKKIPCISFQ----------------------------AGDKVDVGAFSIES 138 (559)
Q Consensus 93 ~pIY~s~~t~~li~~~~~~~--~----~~~~~~~~~i~----------------------------~~~~~~~g~~~v~~ 138 (559)
+-||+++.....++.++.-. + ....+.+++++ .+..++-..|+|+.
T Consensus 78 L~IyGP~Gl~~~v~~~L~~y~wnl~~~~~~~~~v~~~e~~~~~~~~~~f~~~~~F~~~~~~~~~~~~~~i~e~~~~~V~a 157 (334)
T PRK02126 78 LRLFGPPGFADQVEHKLAGYTWNLVENYPTTFRVHEVELHDGRIRRALFRCRRAFRREAEEELSREDGVLLDEPWFRVRA 157 (334)
T ss_pred EEEECCCCHHHHHHHHHHHHHHCCCCCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCEEEEE
T ss_conf 29999824899999986331110124577413899996056532221124321233343223457786578579879999
Q ss_pred EECCCCCCCCCEEEEEECC
Q ss_conf 8556777765356798768
Q gi|254780869|r 139 VRVNHSIPETMALVIRSPV 157 (559)
Q Consensus 139 ~~~~Hsip~a~~~~I~t~~ 157 (559)
+++.|+|| |+||.|+-++
T Consensus 158 ~~l~H~ip-~~gY~i~E~~ 175 (334)
T PRK02126 158 AFLDHGIP-CLAFALEEKA 175 (334)
T ss_pred EECCCCCC-CCEEEEEECC
T ss_conf 97479876-4079999788
No 16
>smart00849 Lactamase_B Metallo-beta-lactamase superfamily. Apart from the beta-lactamases a number of other proteins contain this domain PUBMED:7588620. These proteins include thiolesterases, members of the glyoxalase II family, that catalyse the hydrolysis of S-D-lactoyl-glutathione to form glutathione and D-lactic acid and a competence protein that is essential for natural transformation in Neisseria gonorrhoeae and could be a transporter involved in DNA uptake. Except for the competence protein these proteins bind two zinc ions per molecule as cofactor.
Probab=99.63 E-value=3.3e-14 Score=121.24 Aligned_cols=139 Identities=30% Similarity=0.481 Sum_probs=101.1
Q ss_pred CCCCCEEEEEEECCCCCCEEEEEECCCCCCCCCCCCEEEECCCHHHHHHH-HHCCCEEEEECCCCCCCCCHHHHHHHCCC
Q ss_conf 83466069999517778648999776767888767502870795798766-41246899605430121607888986299
Q gi|254780869|r 15 GEIGMNMALYGYGSPSSRKWIMIDCGVSFPKDDLPGVDLVFPDITFIMKE-RKNLMAIFITHAHEDHYGALHDLWSFLHV 93 (559)
Q Consensus 15 ~eiG~N~~~~~~~~~~~~~~iiiD~G~~fp~~~~~gid~iiPd~~~l~~~-~~~i~~i~iTH~H~DHiGalp~l~~~~~~ 93 (559)
.+.+.|||+++. ++..+|||+|..... .. ...+++. ..+|++||+||+|.||+|+++++.+..++
T Consensus 2 ~~~~~n~~li~~----~~~~vliD~G~~~~~-~~---------~~~l~~~~~~~i~~vv~TH~H~DH~gg~~~~~~~~~~ 67 (183)
T smart00849 2 GGVGVNSYLVEG----DGGAILIDTGPGEAE-DL---------LAELKKLGPKDIDAIILTHGHPDHIGGLPELLEAPGA 67 (183)
T ss_pred CCCCCEEEEEEE----CCEEEEEECCCCHHH-HH---------HHHHHHCCCCCCCEEEECCCCCCHHCHHHHHHHHCCC
T ss_conf 986418999998----998999929898099-99---------9999965998874999899994003309999873299
Q ss_pred CEECCHHHHHHHHHHHHHC-----CCCCCCCEEEECCCCEEEECCEEEEEEEC-CCCCCCCCEEEEEECCCEEEECCCCE
Q ss_conf 7792999999999999854-----88655622551755557763489999855-67777653567987681799833402
Q gi|254780869|r 94 PVYASPFAIGLLEAKRVYE-----RVSKKIPCISFQAGDKVDVGAFSIESVRV-NHSIPETMALVIRSPVGNIVHTGDWK 167 (559)
Q Consensus 94 pIY~s~~t~~li~~~~~~~-----~~~~~~~~~~i~~~~~~~~g~~~v~~~~~-~Hsip~a~~~~I~t~~g~i~ytGDfk 167 (559)
|||+++.+...++...... ..........++.++.+++|+..++++++ +| .||+.++.+ ++.+++||||..
T Consensus 68 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pGH-t~g~~~~~~--~~~~vl~~GD~~ 144 (183)
T smart00849 68 PVYAPEGTAELLKDLLKLGGALGAEAPPPPPDRTLKDGEELDLGGLELEVIHTPGH-TPGSIVLYL--PEGKILFTGDLL 144 (183)
T ss_pred EEEECHHHHHHHHCCHHCCCCCCCCCCCCCCCEECCCCCEEEECCEEEEEEECCCC-CCCCEEEEE--CCCCEEEEEEEE
T ss_conf 89987999999861001033333346777661672899999989986998646887-889899998--999999998898
Q ss_pred ECC
Q ss_conf 467
Q gi|254780869|r 168 LDD 170 (559)
Q Consensus 168 ~d~ 170 (559)
+..
T Consensus 145 ~~~ 147 (183)
T smart00849 145 FSG 147 (183)
T ss_pred CCC
T ss_conf 979
No 17
>KOG1135 consensus
Probab=99.61 E-value=3.5e-12 Score=106.68 Aligned_cols=219 Identities=20% Similarity=0.205 Sum_probs=138.8
Q ss_pred EEECCCCCCCCCEEEEEEECCCCCCEEEEEECCCCCCCCCCCCEEEECCCHHHHHHHHHCCCEEEEECCCCCCCCCHHHH
Q ss_conf 99406868346606999951777864899977676788876750287079579876641246899605430121607888
Q gi|254780869|r 8 FLPLGGVGEIGMNMALYGYGSPSSRKWIMIDCGVSFPKDDLPGVDLVFPDITFIMKERKNLMAIFITHAHEDHYGALHDL 87 (559)
Q Consensus 8 ~~~lGG~~eiG~N~~~~~~~~~~~~~~iiiD~G~~fp~~~~~gid~iiPd~~~l~~~~~~i~~i~iTH~H~DHiGalp~l 87 (559)
...+-|..+=|-=||++++ ++..|+||||-.- .-++ +-+.++......++||+|||.-.-|+|||||+
T Consensus 4 l~~~~g~~de~~~cyllqi----D~~~iLiDcGwd~-~f~~-------~~i~~l~~~i~~iDaILLShpd~~hlGaLpY~ 71 (764)
T KOG1135 4 LTTLCGATDEGPLCYLLQI----DGVRILIDCGWDE-SFDM-------SMIKELKPVIPTIDAILLSHPDILHLGALPYA 71 (764)
T ss_pred EEEECCCCCCCCCEEEEEE----CCEEEEEECCCCC-HHCC-------CHHHHHHCCCCCCCEEEECCCCHHHHCCCHHH
T ss_conf 8730234578864589997----5808997279960-1066-------01001211466443799558986773650536
Q ss_pred HHHC--CCCEECCHHHHHHHH----HHHHHCCCCCC-------------CCEEEECCCCEEEEC----CEEEEEEECCCC
Q ss_conf 9862--997792999999999----99985488655-------------622551755557763----489999855677
Q gi|254780869|r 88 WSFL--HVPVYASPFAIGLLE----AKRVYERVSKK-------------IPCISFQAGDKVDVG----AFSIESVRVNHS 144 (559)
Q Consensus 88 ~~~~--~~pIY~s~~t~~li~----~~~~~~~~~~~-------------~~~~~i~~~~~~~~g----~~~v~~~~~~Hs 144 (559)
+.++ ++|||||-++..|=+ .....++.-.+ -++.+++..+++.+. +++|++++++|
T Consensus 72 ~~k~gl~~~VYAT~PV~~mG~m~myD~~~S~~~~~df~l~sldDvd~aFd~I~~LKYsQ~v~L~gk~~Gl~itaynAGh- 150 (764)
T KOG1135 72 VGKLGLNAPVYATLPVIKMGQMFMYDLYRSHGNVGDFDLFSLDDVDAAFDKIIQLKYSQPVALKGKGSGLTITAYNAGH- 150 (764)
T ss_pred HHHCCCCCEEEEECCHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHEEEEECCCEEEECCCCCCEEEEEECCCC-
T ss_conf 8637725227884343343144179987603664323444366667777541332115547742655724896404777-
Q ss_pred CCCCCEEEEEECCCEEEECCCCEEC-CCCCCCCCCCHHHHHHCCCCCCEEEEECCCCCCCCCCCCC--HHHHHHHHHHHH
Q ss_conf 7765356798768179983340246-7766542389889986087882999963564578887777--879999999998
Q gi|254780869|r 145 IPETMALVIRSPVGNIVHTGDWKLD-DDAILGDVTDKDSLCAIGNEGILALMCDSTNAMREGTCIS--EKGIKKNIYDIM 221 (559)
Q Consensus 145 ip~a~~~~I~t~~g~i~ytGDfk~d-~~p~~g~~~d~~~l~~~~~~gv~~Li~esT~~~~~~~~~s--E~~v~~~i~~~~ 221 (559)
++|..-+.|-.....|+|.-||--- +.-+.|. -+..|.+ .-+||+|+-++..+....- ...+.+.+.+.+
T Consensus 151 miGGsIWkI~k~~E~ivYavd~NHkKe~HLNG~--~l~~l~R-----PsllITda~~~~~~~~~rkkRDe~f~d~v~~~L 223 (764)
T KOG1135 151 MIGGSIWKISKVGEDIVYAVDFNHKKERHLNGC--SLSGLNR-----PSLLITDANHALYSQPRRKKRDEQFLDTVLKTL 223 (764)
T ss_pred CCCCEEEEEEECCCEEEEEEECCCCHHCCCCCC--CCCCCCC-----CCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHH
T ss_conf 567457998735753899970365210005786--4211378-----636983364002456245577799999999984
Q ss_pred HHCCCCEEEEECHHHHHHHHHHHHHHHH
Q ss_conf 6279839999414778999999999987
Q gi|254780869|r 222 KNAKGCVLVTTFSSSVSRIRSIIDIAEQ 249 (559)
Q Consensus 222 ~~~~grViv~~fasni~Ri~~i~~~a~~ 249 (559)
+ ..|.|+++.=. -+|+.+++.+-..
T Consensus 224 ~-~~G~VlipVDt--AgRvLELa~iLdq 248 (764)
T KOG1135 224 R-SGGNVLIPVDT--AGRVLELALILDQ 248 (764)
T ss_pred C-CCCCEEEEECC--CHHHHHHHHHHHH
T ss_conf 2-79809999625--0779999999999
No 18
>PRK05184 pyrroloquinoline quinone biosynthesis protein PqqB; Provisional
Probab=99.55 E-value=2.2e-13 Score=115.30 Aligned_cols=123 Identities=17% Similarity=0.214 Sum_probs=88.2
Q ss_pred CCCEEEEECCCCCCCCCHHHHHHHCCCCEECCHHHHHHHHHHHHHCCC---CCCCCEEEECCCCEEEEC---CEEEEEEE
Q ss_conf 246899605430121607888986299779299999999999985488---655622551755557763---48999985
Q gi|254780869|r 67 NLMAIFITHAHEDHYGALHDLWSFLHVPVYASPFAIGLLEAKRVYERV---SKKIPCISFQAGDKVDVG---AFSIESVR 140 (559)
Q Consensus 67 ~i~~i~iTH~H~DHiGalp~l~~~~~~pIY~s~~t~~li~~~~~~~~~---~~~~~~~~i~~~~~~~~g---~~~v~~~~ 140 (559)
+|+|||+||||.||+.||-+|.....+|||+++-+.+.|+....-... ......+.+...+.++++ +++|++|+
T Consensus 80 ~i~~V~lTHaH~dH~~GL~~LRe~~~i~vya~~~~~~~L~~~~p~~~~l~~~~~v~~~~i~~~~~~~~~~~~gl~v~p~~ 159 (302)
T PRK05184 80 PIAAVVLTDGQIDHVTGLLSLREGQPFPLYATPMVLEDLSTGFPIFNVLDHYCGVDRRPIALDGPFAVPGLPGLRFTAFP 159 (302)
T ss_pred CCCEEEEECCCCCHHCCHHHHHCCCCCCEEECHHHHHHHHHCCCHHHHHCCCCCCCCEECCCCCCCCCCCCCCCEEEEEE
T ss_conf 73489986575003317888715697206746899999986398878533346621024146886234787981899986
Q ss_pred CCCCCC------------CCCEEEEEECC--CEEEECCCCEECCCCCCCCCCCHHHHHHCCCCCCEEEEECCCC
Q ss_conf 567777------------65356798768--1799833402467766542389889986087882999963564
Q gi|254780869|r 141 VNHSIP------------ETMALVIRSPV--GNIVHTGDWKLDDDAILGDVTDKDSLCAIGNEGILALMCDSTN 200 (559)
Q Consensus 141 ~~Hsip------------~a~~~~I~t~~--g~i~ytGDfk~d~~p~~g~~~d~~~l~~~~~~gv~~Li~esT~ 200 (559)
|.|..| ++.||.|.-+. ++++|.-|.. . .+...+..+ +++|+++.|+|.
T Consensus 160 Vp~k~p~~~~h~~~~~~~etvG~~i~~~~~gk~~~YipD~~--------~-~~~~~~~~l--~~~D~~l~DGTf 222 (302)
T PRK05184 160 VPSKAPPYSPHRGDPHPGDNIGLRIEDTATGRRLFYAPGLA--------E-VTDDLRARL--AGADCVLFDGTL 222 (302)
T ss_pred CCCCCCCCCCCCCCCCCCCEEEEEEECCCCCEEEEEECCCC--------C-CCHHHHHHH--HCCCEEEEECCC
T ss_conf 48877765444567876846899997278871799944856--------5-688999998--469989995002
No 19
>COG1234 ElaC Metal-dependent hydrolases of the beta-lactamase superfamily III [General function prediction only]
Probab=99.49 E-value=1.8e-12 Score=108.80 Aligned_cols=216 Identities=21% Similarity=0.273 Sum_probs=121.1
Q ss_pred CEEEEEECCCC---CCCCCEEEEEEECCCCCCEEEEEECCCCCCCCCCCCEEEECCCHHHHHHH--HHCCCEEEEECCCC
Q ss_conf 63999940686---83466069999517778648999776767888767502870795798766--41246899605430
Q gi|254780869|r 4 EELVFLPLGGV---GEIGMNMALYGYGSPSSRKWIMIDCGVSFPKDDLPGVDLVFPDITFIMKE--RKNLMAIFITHAHE 78 (559)
Q Consensus 4 ~~i~~~~lGG~---~eiG~N~~~~~~~~~~~~~~iiiD~G~~fp~~~~~gid~iiPd~~~l~~~--~~~i~~i~iTH~H~ 78 (559)
.++.|+--||. .+.....+++. ..++.+++|||-+--. +.+... ..++++|||||.|.
T Consensus 2 m~i~fLGtg~~~Pt~~r~~~s~ll~----~~~~~~L~DcGeGt~~-------------~l~~~~~~~~~i~~IfITH~H~ 64 (292)
T COG1234 2 MEITFLGTGGAVPTKDRNVSSILLR----LEGEKFLFDCGEGTQH-------------QLLRAGLPPRKIDAIFITHLHG 64 (292)
T ss_pred CEEEEEECCCCCCCCCCCCCEEEEE----ECCEEEEEECCHHHHH-------------HHHHHCCCCCCCCEEEEECCCC
T ss_conf 7899996699877476776679998----1992799977867999-------------9998038820268899827863
Q ss_pred CCCCCHHHHHHHC-------CCCEECCHHHHHHHHHHHHHCCCCCCCC--EEEE---------------------CCCCE
Q ss_conf 1216078889862-------9977929999999999998548865562--2551---------------------75555
Q gi|254780869|r 79 DHYGALHDLWSFL-------HVPVYASPFAIGLLEAKRVYERVSKKIP--CISF---------------------QAGDK 128 (559)
Q Consensus 79 DHiGalp~l~~~~-------~~pIY~s~~t~~li~~~~~~~~~~~~~~--~~~i---------------------~~~~~ 128 (559)
||+.+||.|+... +.+||+++..+..+..-+........++ .+++ ...+.
T Consensus 65 DHi~gL~~ll~~~~~~~~~~~l~iygP~g~~~~~~~~~~~~~~~~~~~i~~~e~~~~~~~v~~~~~~h~~~~~~y~~~e~ 144 (292)
T COG1234 65 DHIAGLPGLLVSRSFRGRREPLKIYGPPGIKEFVETSLRLSYSKLTYEIIGHEIEEDAFEVEALELDHGVPALGYRIEEP 144 (292)
T ss_pred CCCCCHHHHHHHHHCCCCCCCCEEECCCCCCHHHHHHHHCCCCCCCEEEEEEECCCCCEEEEEEECCCCCCCCEEECCCC
T ss_conf 42377789999614018999824988853002121121113444550699998246635898876276654322441367
Q ss_pred EEEC------------CEEEEEEECCCC----CCCCCEEEEEECC--CEEEECCCCEECCCCCCCCCCCHHHHHHCCCCC
Q ss_conf 7763------------489999855677----7765356798768--179983340246776654238988998608788
Q gi|254780869|r 129 VDVG------------AFSIESVRVNHS----IPETMALVIRSPV--GNIVHTGDWKLDDDAILGDVTDKDSLCAIGNEG 190 (559)
Q Consensus 129 ~~~g------------~~~v~~~~~~Hs----ip~a~~~~I~t~~--g~i~ytGDfk~d~~p~~g~~~d~~~l~~~~~~g 190 (559)
...| ++.++++++.|+ ++ +.++.+.-+. .+|+||||-+ ++ +.+.+.+ +|
T Consensus 145 ~~~~~~~~~~~~~~~~g~~~~~l~~~h~~~~~~~-~~~~~~~~~~~G~~v~ysGDT~---------p~--~~~~~~a-~~ 211 (292)
T COG1234 145 DRPGRFDAEKLKGLPPGPLITALKAGHPVEERVI-TPADRIGEPRKGKSVVYSGDTR---------PC--DELIDLA-KG 211 (292)
T ss_pred CCCCCCCHHHHCCCCCCCEEEEEECCCCCCEEEC-CHHHEEECCCCCEEEEEECCCC---------CC--HHHHHHH-CC
T ss_conf 7655458777515888861786415984312551-4888530588970999979997---------77--6899976-68
Q ss_pred CEEEEECCCCCCCCCCCCCH--HHHHHHHHHHHHHCC-CCEEEEECHHHHH-HHHHHHHHHHH
Q ss_conf 29999635645788877778--799999999986279-8399994147789-99999999987
Q gi|254780869|r 191 ILALMCDSTNAMREGTCISE--KGIKKNIYDIMKNAK-GCVLVTTFSSSVS-RIRSIIDIAEQ 249 (559)
Q Consensus 191 v~~Li~esT~~~~~~~~~sE--~~v~~~i~~~~~~~~-grViv~~fasni~-Ri~~i~~~a~~ 249 (559)
+|+||+|+|.......-..+ +...+...++.++++ ++.+.+=|++-.. ...++.+.|++
T Consensus 212 aDlLiHEat~~~~~~~~a~~~~HsT~~eAa~iA~~A~vk~LiLtH~s~ry~~~~~~~~~ea~~ 274 (292)
T COG1234 212 ADLLIHEATFEDDLEDLANEGGHSTAEEAAEIAKEAGVKKLILTHFSPRYPKDDEELLKEARA 274 (292)
T ss_pred CCEEEEEEECCCCHHHHHCCCCCCCHHHHHHHHHHCCCCEEEEEEECCCCCCHHHHHHHHHHH
T ss_conf 989999612476513440447999999999999975988699982276664407999999998
No 20
>pfam02112 PDEase_II cAMP phosphodiesterases class-II.
Probab=99.38 E-value=1.7e-11 Score=101.66 Aligned_cols=192 Identities=19% Similarity=0.221 Sum_probs=119.3
Q ss_pred EEECC---CCCCCCCEEEEEEECCCCCCEEEEEECCCCCCC--------CCCCCEEEECC--------CHHHHHHHHHCC
Q ss_conf 99406---868346606999951777864899977676788--------87675028707--------957987664124
Q gi|254780869|r 8 FLPLG---GVGEIGMNMALYGYGSPSSRKWIMIDCGVSFPK--------DDLPGVDLVFP--------DITFIMKERKNL 68 (559)
Q Consensus 8 ~~~lG---G~~eiG~N~~~~~~~~~~~~~~iiiD~G~~fp~--------~~~~gid~iiP--------d~~~l~~~~~~i 68 (559)
+.+|| |..| .||+.+-......+..+.+|||...+. ...+-.+.-.| ....-..-++.|
T Consensus 3 vivLG~~GGp~E--~n~ts~Lvr~~~~~~~ialDAGt~l~gI~~~~~~~~~~~~~~~~~p~~~~~~~p~~~a~~i~~~~I 80 (323)
T pfam02112 3 TNLLGQVGGIDE--GNLSSFLIEDEAQETFIKLDAGSVLQGYPCLTVSKYLSPNVTITTPFSNFESGPYIKHTYLLFNRI 80 (323)
T ss_pred EEEECCCCCCCC--CCEEEEEEEECCCCCEEEEECCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHC
T ss_conf 999589889788--872489965469886899977655888999986410477542357765534571356789998522
Q ss_pred CEEEEECCCCCCCCCHHHHHHHC-----CCCEECCHHHHHHHHHHHHHCCCCCCC------------CEEEECCCCEEEE
Q ss_conf 68996054301216078889862-----997792999999999999854886556------------2255175555776
Q gi|254780869|r 69 MAIFITHAHEDHYGALHDLWSFL-----HVPVYASPFAIGLLEAKRVYERVSKKI------------PCISFQAGDKVDV 131 (559)
Q Consensus 69 ~~i~iTH~H~DHiGalp~l~~~~-----~~pIY~s~~t~~li~~~~~~~~~~~~~------------~~~~i~~~~~~~~ 131 (559)
.+.||||+|+||+.||----+.. +-+|||.+.|.+.++..+..+..|++. ++..+.+++..++
T Consensus 81 ~~ylITH~HLDHIaGLvinsp~~~~~~~~K~i~gl~~ti~aLk~hiFN~~iWPNl~~~g~~~~~~~~~~~~l~~~~~~~~ 160 (323)
T pfam02112 81 KNYLITHSHLDHVCGLVINSPGFYKQMSKKTIYGLPYTINALQKHLFNNLVWPNLPSFGIVNLIYKVKMFDLSPGEFNKL 160 (323)
T ss_pred CEEEECCCCHHHHHHHHCCCCCCCCCCCCCEEEECHHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCC
T ss_conf 13993265277664543058543346799518865899999987331674267886678877431699887387751024
Q ss_pred --CCEEEEEEECCCCC-----CCCCEEEEEE--CCCEEEECCCCEECCCCCCCCCCCHHHHHH----CCCCCCEEEEECC
Q ss_conf --34899998556777-----7653567987--681799833402467766542389889986----0878829999635
Q gi|254780869|r 132 --GAFSIESVRVNHSI-----PETMALVIRS--PVGNIVHTGDWKLDDDAILGDVTDKDSLCA----IGNEGILALMCDS 198 (559)
Q Consensus 132 --g~~~v~~~~~~Hsi-----p~a~~~~I~t--~~g~i~ytGDfk~d~~p~~g~~~d~~~l~~----~~~~gv~~Li~es 198 (559)
..+++++||++|+. ..|.+|.|+- .+..|+|.||+--|... ..+.+..-|.. +......+++.|+
T Consensus 161 ~~~~~~v~~fp~sH~~~~~~~~~SsAflird~~t~~~il~fGD~epDsvs--~~~~~~~iW~~~Ap~I~~~kLk~I~IEc 238 (323)
T pfam02112 161 TETTMSVVPFPVNHGGLIIKEALSTAFLFTDSVSGDSILVFGDVEPDLVE--SESLNLFIWSVIASLIKQNKLKAILIEC 238 (323)
T ss_pred CCCCCEEEEECCCCCCCCCCCCCCEEEEEEECCCCCEEEEECCCCCCCCC--CCCHHHHHHHHHHHHHHHCCCCEEEEEE
T ss_conf 67763156744537887677634407999955899789998288886335--7815899999986442124447899996
Q ss_pred CCCCC
Q ss_conf 64578
Q gi|254780869|r 199 TNAMR 203 (559)
Q Consensus 199 T~~~~ 203 (559)
.+.+.
T Consensus 239 S~~n~ 243 (323)
T pfam02112 239 SFPNE 243 (323)
T ss_pred CCCCC
T ss_conf 79999
No 21
>COG1235 PhnP Metal-dependent hydrolases of the beta-lactamase superfamily I [General function prediction only]
Probab=99.36 E-value=3.4e-11 Score=99.55 Aligned_cols=160 Identities=20% Similarity=0.261 Sum_probs=96.2
Q ss_pred CCCEEEEECCCCCCCCCHHHHHHHCCCCEECCHHHHHHHHHHHHHCCCCCCCCEEEECCCCEEEECCEEEEEEECCCCCC
Q ss_conf 24689960543012160788898629977929999999999998548865562255175555776348999985567777
Q gi|254780869|r 67 NLMAIFITHAHEDHYGALHDLWSFLHVPVYASPFAIGLLEAKRVYERVSKKIPCISFQAGDKVDVGAFSIESVRVNHSIP 146 (559)
Q Consensus 67 ~i~~i~iTH~H~DHiGalp~l~~~~~~pIY~s~~t~~li~~~~~~~~~~~~~~~~~i~~~~~~~~g~~~v~~~~~~Hsip 146 (559)
+++|||+||.|.|||.+++.|.+.+..++|..+.|............. +.....++.+.+...++.+.++++++.|+..
T Consensus 62 ~idai~~TH~H~DHi~Gl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~hd~~ 140 (269)
T COG1235 62 DLDAILLTHEHSDHIQGLDDLRRAYTLPIYVNPGTLRASTSDRLLGGF-PYLFRHPFPPFSLPAIGGLEVTPFPVPHDAI 140 (269)
T ss_pred CCCEEEEECCCHHHHCCHHHHHHHHCCCCEEEECEECCCCCCHHHCCC-CHHHCCCCCCCCCCCCCCCEEECCCCCCCCC
T ss_conf 456799915856765788889988558845753200134321233026-0343176776563123731786589898554
Q ss_pred CCCEEEEE-----------------ECCCEEEECCCCEECCCCCCCCCCCHH-HHHHCCCCCCEEEEECCCCCCCCCCCC
Q ss_conf 65356798-----------------768179983340246776654238988-998608788299996356457888777
Q gi|254780869|r 147 ETMALVIR-----------------SPVGNIVHTGDWKLDDDAILGDVTDKD-SLCAIGNEGILALMCDSTNAMREGTCI 208 (559)
Q Consensus 147 ~a~~~~I~-----------------t~~g~i~ytGDfk~d~~p~~g~~~d~~-~l~~~~~~gv~~Li~esT~~~~~~~~~ 208 (559)
+..++.+. .-.|.+.|+.|-.. .+.+.. .+.. .......+.+++.... |+-+
T Consensus 141 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~vay~~Dt~~-------~~~~~d~~l~~--~~~~~~~~~~~~~~~~-gh~~ 210 (269)
T COG1235 141 EPVGFVIIRTGRKLHGGTDIGYGLEWRIGDVAYLTDTEL-------FPSNHDVELLD--NGLYPLDIKDRILPDP-GHLS 210 (269)
T ss_pred CCCCCCEEECCEEEECCCCEEEEEEEECCCEEEECCCCC-------CCHHHHHHHHC--CCCHHHHHHHCCCCCC-CCCC
T ss_conf 377761341350340565337678876161899665433-------64044898851--7631344443125888-8787
Q ss_pred CHHHHHHHHHHHHHHC-CCCEEEEECHHHHH
Q ss_conf 7879999999998627-98399994147789
Q gi|254780869|r 209 SEKGIKKNIYDIMKNA-KGCVLVTTFSSSVS 238 (559)
Q Consensus 209 sE~~v~~~i~~~~~~~-~grViv~~fasni~ 238 (559)
++..++.. .++.+.. ..|++++=.+....
T Consensus 211 ~h~~~~~a-~~~~~~~~~~rivLtHls~~~~ 240 (269)
T COG1235 211 NHLSAEEA-LELIEKLKPKRLVLTHLSHKND 240 (269)
T ss_pred CCHHHHHH-HHHHHHCCCCEEEEEECCCCCC
T ss_conf 73139999-9997537866699996487687
No 22
>TIGR03413 GSH_gloB hydroxyacylglutathione hydrolase. Members of this protein family are hydroxyacylglutathione hydrolase, a detoxification enzyme known as glyoxalase II. It follows lactoylglutathione lyase, or glyoxalase I, and acts to remove the toxic metabolite methylglyoxal and related compounds. This protein belongs to the broader metallo-beta-lactamase family (pfam00753).
Probab=99.36 E-value=1.4e-11 Score=102.29 Aligned_cols=111 Identities=23% Similarity=0.353 Sum_probs=87.6
Q ss_pred CCEEEEEECCCCCCCCCCCCEEEECCCHHHHHHHHHCCCEEEEECCCCCCCCCHHHHHHHCCCCEECCHHHHHHHHHHHH
Q ss_conf 86489997767678887675028707957987664124689960543012160788898629977929999999999998
Q gi|254780869|r 31 SRKWIMIDCGVSFPKDDLPGVDLVFPDITFIMKERKNLMAIFITHAHEDHYGALHDLWSFLHVPVYASPFAIGLLEAKRV 110 (559)
Q Consensus 31 ~~~~iiiD~G~~fp~~~~~gid~iiPd~~~l~~~~~~i~~i~iTH~H~DHiGalp~l~~~~~~pIY~s~~t~~li~~~~~ 110 (559)
+++.++||.| +.. |-.++++++.-++.+|++||.|.||+||+..|...+++|||++...
T Consensus 19 ~~~a~vIDP~-----d~~-------~i~~~l~~~~l~l~~IL~TH~H~DHi~G~~~L~~~~~~~Vyg~~~~--------- 77 (248)
T TIGR03413 19 DGQAAVVDPG-----EAE-------PVLDALEARGLTLTAILLTHHHHDHVGGVAELLEAFPAPVYGPAEE--------- 77 (248)
T ss_pred CCCEEEECCC-----CCH-------HHHHHHHHCCCEEEEEEECCCCCCCCCCHHHHHHHCCCCCCCCHHH---------
T ss_conf 9858998799-----809-------9999999879967899948988600131899997514661201111---------
Q ss_pred HCCCCCCCCEEEECCCCEEEECCEEEEEEECCCCCCCCCEEEEEECCCEEEECCCCEE
Q ss_conf 5488655622551755557763489999855677776535679876817998334024
Q gi|254780869|r 111 YERVSKKIPCISFQAGDKVDVGAFSIESVRVNHSIPETMALVIRSPVGNIVHTGDWKL 168 (559)
Q Consensus 111 ~~~~~~~~~~~~i~~~~~~~~g~~~v~~~~~~Hsip~a~~~~I~t~~g~i~ytGDfk~ 168 (559)
.. ...-+.+..++.+++|+++++.+.+....||+++|.+. +..++||||.-|
T Consensus 78 --~~--~~~d~~l~dgd~i~ig~~~~~vi~TPGHT~ghv~f~~~--~~~~lFtGDTLF 129 (248)
T TIGR03413 78 --RI--PGITHPVKDGDTVTLGGLEFEVLAVPGHTLGHIAYYLP--DSPALFCGDTLF 129 (248)
T ss_pred --CC--CCCEEEECCCCEEEECCEEEEEEECCCCCCCCEEEEEC--CCEEEEECCEEE
T ss_conf --68--77707825898898899889999678997300689955--740798446344
No 23
>pfam00753 Lactamase_B Metallo-beta-lactamase superfamily.
Probab=99.34 E-value=2e-11 Score=101.25 Aligned_cols=140 Identities=26% Similarity=0.323 Sum_probs=84.3
Q ss_pred CCCCCEEEEEEECCCCCCEEEEEECCCCCCCCCCCCEEEECCCHHHHHHHHHCCCEEEEECCCCCCCCCHHHHHHHCCCC
Q ss_conf 83466069999517778648999776767888767502870795798766412468996054301216078889862997
Q gi|254780869|r 15 GEIGMNMALYGYGSPSSRKWIMIDCGVSFPKDDLPGVDLVFPDITFIMKERKNLMAIFITHAHEDHYGALHDLWSFLHVP 94 (559)
Q Consensus 15 ~eiG~N~~~~~~~~~~~~~~iiiD~G~~fp~~~~~gid~iiPd~~~l~~~~~~i~~i~iTH~H~DHiGalp~l~~~~~~p 94 (559)
++.+.|||+++ .+++.+|||+|......... .........++++|++||.|.||+|+++++.+.+..+
T Consensus 2 ~~~~~~~~li~----~~~~~vLiD~G~~~~~~~~~--------~~~~~~~~~~v~~vi~TH~H~DH~gg~~~~~~~~~~~ 69 (148)
T pfam00753 2 GGVGSNSYLVE----GDGGAILIDTGLGADDALLL--------LAALGLDPKDIDAIILTHAHADHIGGLPELKEATPAP 69 (148)
T ss_pred CCCEEEEEEEE----ECCEEEEEECCCCHHHHHHH--------HHHHCCCCCCCCEEEECCCCHHHHCCHHHHHHHCCCC
T ss_conf 98555899999----89989999598991589999--------9983799768649997999855655689999875998
Q ss_pred EECCHHHHHH-HHHHHHHCCC----CCCCCEEEECCCCEEEECCEEEEEEECCCCCCCCCEEEEEECCCEEEECCCCEE
Q ss_conf 7929999999-9999985488----655622551755557763489999855677776535679876817998334024
Q gi|254780869|r 95 VYASPFAIGL-LEAKRVYERV----SKKIPCISFQAGDKVDVGAFSIESVRVNHSIPETMALVIRSPVGNIVHTGDWKL 168 (559)
Q Consensus 95 IY~s~~t~~l-i~~~~~~~~~----~~~~~~~~i~~~~~~~~g~~~v~~~~~~Hsip~a~~~~I~t~~g~i~ytGDfk~ 168 (559)
++..+..... .......... ............+....+...+.... |+.+.+..+++.++.++++||||..+
T Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~vl~~GD~~~ 146 (148)
T pfam00753 70 VVAAPEDAAALLRLGLDDAELRKLVDVLPPDVDLEGGDGILGGGTLLFVTP--HPGHGPGHVVVYLPGGKVLFTGDLLF 146 (148)
T ss_pred EEECCHHHHHHHHHHHCCCCCCCCCCCCCCEEEECCCEEEECCCEEEEEEE--CCCCCCCCEEEEECCCCEEEECCCCC
T ss_conf 998268887654210000100246666665054057419924988999997--89988985999999999999898267
No 24
>PRK00685 metal-dependent hydrolase; Provisional
Probab=99.32 E-value=9.8e-10 Score=89.04 Aligned_cols=198 Identities=18% Similarity=0.135 Sum_probs=119.2
Q ss_pred CCCEEEEEEECCCCCCEEEEEECCCCCCCCCCCCEEEECCCHHHHHHHHHCCCEEEEECCCCCCCCCHHHHHHHCCCCEE
Q ss_conf 46606999951777864899977676788876750287079579876641246899605430121607888986299779
Q gi|254780869|r 17 IGMNMALYGYGSPSSRKWIMIDCGVSFPKDDLPGVDLVFPDITFIMKERKNLMAIFITHAHEDHYGALHDLWSFLHVPVY 96 (559)
Q Consensus 17 iG~N~~~~~~~~~~~~~~iiiD~G~~fp~~~~~gid~iiPd~~~l~~~~~~i~~i~iTH~H~DHiGalp~l~~~~~~pIY 96 (559)
+|-+|.++++ ++..|++|-=+ +..|...+- | ..-++|.|+|||.|.||++-.+-+.++.+.++.
T Consensus 6 lGha~~li~~----~g~~iLiDP~~----s~~~~~~~~-~-------~~~~~D~VliSH~H~DHl~d~~~~~~~~~~~~i 69 (228)
T PRK00685 6 LGHSAFRIET----GGKKILIDPFL----TGNPKADLK-P-------EDVKVDHILLTHGHGDHVGDTVEIAKRTGAVVV 69 (228)
T ss_pred ECCCEEEEEE----CCEEEEECCCC----CCCCCCCCC-C-------CCCCCCEEEECCCCCCCCCCHHHHHHHCCCEEE
T ss_conf 4056999998----99999988866----899877888-5-------446799999668883435658888751599899
Q ss_pred CCHHHHHHHHHHHHHCCCCCCCCEEEECCCCEEEECCEEEEEEECCCCC--C---------C-CCEEEEEECCCEEEECC
Q ss_conf 2999999999999854886556225517555577634899998556777--7---------6-53567987681799833
Q gi|254780869|r 97 ASPFAIGLLEAKRVYERVSKKIPCISFQAGDKVDVGAFSIESVRVNHSI--P---------E-TMALVIRSPVGNIVHTG 164 (559)
Q Consensus 97 ~s~~t~~li~~~~~~~~~~~~~~~~~i~~~~~~~~g~~~v~~~~~~Hsi--p---------~-a~~~~I~t~~g~i~ytG 164 (559)
++......++.+ ..+..++++++++++++++|+..|+-|+- . | +.||.|+.++++|+|+|
T Consensus 70 ~p~~~~~~~~~~--------g~~~~~~~~~~~~~~~gi~i~~vpa~H~~~~~~~~~~~~~~g~~~g~vi~~~g~~iy~~G 141 (228)
T PRK00685 70 ANFELATYLGWQ--------GVKTHPMNIGGTVEFDGGKVKFTQALHSSSYITEDGVSIYLGNPAGIVFTFEGKTIYHAG 141 (228)
T ss_pred ECHHHHHHHHHC--------CCCEEEECCCCEEEECCEEEEEEECCCCCCCCCCCCCCEECCCCEEEEEEECCEEEEEEC
T ss_conf 636899999865--------981899327874997888999996654666557788626877877999997993899833
Q ss_pred CCEECCCCCCCCCCCHHHHHHCCCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEE----ECHHHHHHH
Q ss_conf 4024677665423898899860878829999635645788877778799999999986279839999----414778999
Q gi|254780869|r 165 DWKLDDDAILGDVTDKDSLCAIGNEGILALMCDSTNAMREGTCISEKGIKKNIYDIMKNAKGCVLVT----TFSSSVSRI 240 (559)
Q Consensus 165 Dfk~d~~p~~g~~~d~~~l~~~~~~gv~~Li~esT~~~~~~~~~sE~~v~~~i~~~~~~~~grViv~----~fasni~Ri 240 (559)
|- |...++..+.+.. ++|++++--. + ..+.+-.+.. ++++.-+-+++++ ||..+-+--
T Consensus 142 DT--------~~~~~~~~i~~~~--~pDlallpiG-g---~~~m~p~eA~----~~~~~l~~k~~IP~H~gtf~~~~~~p 203 (228)
T PRK00685 142 DT--------DLFSDMKLIGELH--QPDIALLPIG-D---RFTMGPADAA----LAAEWLKPKTVVPMHYNTFPVIEQDP 203 (228)
T ss_pred CC--------CCCHHHHHHHHHC--CCCEEEEECC-C---CCCCCHHHHH----HHHHHHCCCEEEECCCCCCCCCCCCH
T ss_conf 76--------6655799977655--9969999189-9---6105999999----99997399999981888888653799
Q ss_pred HHHHHHHHHHCCEEEE
Q ss_conf 9999999871886998
Q gi|254780869|r 241 RSIIDIAEQIGRKIVL 256 (559)
Q Consensus 241 ~~i~~~a~~~~R~v~i 256 (559)
+++.+.+++.+-+|.+
T Consensus 204 ~~~~~~~~~~~~~v~i 219 (228)
T PRK00685 204 EKFVAGLEGVKTTVVI 219 (228)
T ss_pred HHHHHHHHCCCCEEEE
T ss_conf 9999987524987997
No 25
>PRK10241 hydroxyacylglutathione hydrolase; Provisional
Probab=99.20 E-value=1.5e-10 Score=94.85 Aligned_cols=109 Identities=19% Similarity=0.263 Sum_probs=84.3
Q ss_pred CCEEEEEECCCCCCCCCCCCEEEECCCHHHHHHHHHCCCEEEEECCCCCCCCCHHHHHHHC-CCCEECCHHHHHHHHHHH
Q ss_conf 8648999776767888767502870795798766412468996054301216078889862-997792999999999999
Q gi|254780869|r 31 SRKWIMIDCGVSFPKDDLPGVDLVFPDITFIMKERKNLMAIFITHAHEDHYGALHDLWSFL-HVPVYASPFAIGLLEAKR 109 (559)
Q Consensus 31 ~~~~iiiD~G~~fp~~~~~gid~iiPd~~~l~~~~~~i~~i~iTH~H~DHiGalp~l~~~~-~~pIY~s~~t~~li~~~~ 109 (559)
.++.++||.| +.. |-.++++++.-++.+|++||.|.||+||++.|...+ +++||++..+.
T Consensus 21 ~~~a~vIDPg-----d~~-------~i~~~l~~~~l~l~~IL~TH~H~DHi~G~~~L~~~~~~~~v~g~~~~~------- 81 (251)
T PRK10241 21 AGRCLIVDPG-----EAE-------PVLNAIAANNWQPEAIFLTHHHHDHVGGVKELVEKFPQIVVYGPQETQ------- 81 (251)
T ss_pred CCCEEEECCC-----CHH-------HHHHHHHHCCCEEEEEEECCCCHHHHHHHHHHHHHCCCCEEECHHHCC-------
T ss_conf 9838999499-----709-------999999977991789994589557663299999876898586703326-------
Q ss_pred HHCCCCCCCCEEEECCCCEEEECCEEEEEEECCCCCCCCCEEEEEECCCEEEECCCCEE
Q ss_conf 85488655622551755557763489999855677776535679876817998334024
Q gi|254780869|r 110 VYERVSKKIPCISFQAGDKVDVGAFSIESVRVNHSIPETMALVIRSPVGNIVHTGDWKL 168 (559)
Q Consensus 110 ~~~~~~~~~~~~~i~~~~~~~~g~~~v~~~~~~Hsip~a~~~~I~t~~g~i~ytGDfk~ 168 (559)
.....+.++.++.+++|+.+++.+.+....||+.+|. ...++||||-=|
T Consensus 82 ------~~~~~~~v~dgd~i~~g~~~~~vi~TPGHT~Ghi~y~----~~~~lFtGDTLF 130 (251)
T PRK10241 82 ------DKGTTQVVKDGETAFVLGHEFSVFATPGHTLGHICYF----SKPYLFCGDTLF 130 (251)
T ss_pred ------CCCCCEEECCCCEEEECCEEEEEEECCCCCCCHHHHH----CCCCEEECCCCC
T ss_conf ------7689878489999998998999997799983000111----377067515300
No 26
>COG0426 FpaA Uncharacterized flavoproteins [Energy production and conversion]
Probab=99.11 E-value=1.6e-09 Score=87.54 Aligned_cols=305 Identities=20% Similarity=0.227 Sum_probs=162.7
Q ss_pred CCCEEEEEEECCCCCCEEEEEECCC-CCCCCCCCCEEEECCCHHHHHHH--HHCCCEEEEECCCCCCCCCHHHHHHHC-C
Q ss_conf 4660699995177786489997767-67888767502870795798766--412468996054301216078889862-9
Q gi|254780869|r 17 IGMNMALYGYGSPSSRKWIMIDCGV-SFPKDDLPGVDLVFPDITFIMKE--RKNLMAIFITHAHEDHYGALHDLWSFL-H 92 (559)
Q Consensus 17 iG~N~~~~~~~~~~~~~~iiiD~G~-~fp~~~~~gid~iiPd~~~l~~~--~~~i~~i~iTH~H~DHiGalp~l~~~~-~ 92 (559)
+--|.|++. ++...|||-+- +|-. .. ++.|.+. .++|+-|+++|.--||.|+||.+++.. +
T Consensus 34 ttyNSYLI~-----~~k~aLID~~~~~f~~-------~~---l~~l~~~id~k~iDYIi~~H~ePDhsg~l~~ll~~~p~ 98 (388)
T COG0426 34 TTYNSYLIV-----GDKTALIDTVGEKFFD-------EY---LENLSKYIDPKEIDYIIVNHTEPDHSGSLPELLELAPN 98 (388)
T ss_pred CEEEEEEEE-----CCCEEEECCCCCCHHH-------HH---HHHHHHHCCHHCCEEEEECCCCCCHHHHHHHHHHHCCC
T ss_conf 144558996-----7967998899801699-------99---99998634800171999788896335469999986889
Q ss_pred CCEECCHHHHHHHHHHHHHCCCCCCCCEEEECCCCEEEECCEEEEEEECC--CCCCCCCEEEEEECCCEEEECCCC----
Q ss_conf 97792999999999999854886556225517555577634899998556--777765356798768179983340----
Q gi|254780869|r 93 VPVYASPFAIGLLEAKRVYERVSKKIPCISFQAGDKVDVGAFSIESVRVN--HSIPETMALVIRSPVGNIVHTGDW---- 166 (559)
Q Consensus 93 ~pIY~s~~t~~li~~~~~~~~~~~~~~~~~i~~~~~~~~g~~~v~~~~~~--Hsip~a~~~~I~t~~g~i~ytGDf---- 166 (559)
++|++|+..+.+|+..... +.. +..++.++++++|+-+++|+++. |+ ||++... .+..+|+||+|+
T Consensus 99 a~ii~s~~~~~~L~~~~~~----~~~-~~ivk~Gd~ldlGg~tL~Fi~ap~LHW-Pd~m~TY--d~~~kILFS~D~fG~h 170 (388)
T COG0426 99 AKIICSKLAARFLKGFYHD----PEW-FKIVKTGDTLDLGGHTLKFIPAPFLHW-PDTMFTY--DPEDKILFSCDAFGAH 170 (388)
T ss_pred CEEEEEHHHHHHHHHHCCC----CCC-EEECCCCCEECCCCCEEEEEECCCCCC-CCCEEEE--ECCCCEEECCCCCCCC
T ss_conf 7899638999999974488----541-363478877644894799995787779-8733676--2477577714656642
Q ss_pred -----EECCCCCCCCCCCHHHHHHCCCCCCEEEEE---------------CCC--CCCCCCCCCC--HHHHHHHHHHHHH
Q ss_conf -----246776654238988998608788299996---------------356--4578887777--8799999999986
Q gi|254780869|r 167 -----KLDDDAILGDVTDKDSLCAIGNEGILALMC---------------DST--NAMREGTCIS--EKGIKKNIYDIMK 222 (559)
Q Consensus 167 -----k~d~~p~~g~~~d~~~l~~~~~~gv~~Li~---------------esT--~~~~~~~~~s--E~~v~~~i~~~~~ 222 (559)
+||+. +.++....++--+++++ ... .+...|.-.. =.++.+...+-.+
T Consensus 171 ~~~~~~fded--------~~~~~~~~~~Y~~~lm~p~~~~v~~~l~~~~~l~i~~IaP~HG~i~~~~~~~i~~~Y~~W~~ 242 (388)
T COG0426 171 VCDDYRFDED--------IEELLPDMRKYYANLMAPNARLVLWALKKIKLLKIEMIAPSHGPIWRGNPKEIVEAYRDWAE 242 (388)
T ss_pred CCCHHCCCCC--------HHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCCEEECCCCCEEECCHHHHHHHHHHHHC
T ss_conf 4652112467--------99987989999999605217999999854054674189759985255798999999999970
Q ss_pred HC-CCCEEE---EECHHHHHH-HHHHHHHHHHHCCEEEEECHHHHHHHHHHHHCCCCCCCCCCCCHHH-HCCCCCCCEEE
Q ss_conf 27-983999---941477899-9999999987188699844869999998874287677654226566-22388020899
Q gi|254780869|r 223 NA-KGCVLV---TTFSSSVSR-IRSIIDIAEQIGRKIVLLGSSLKRVVSVAIDVGIIKKDQLFLSDES-FGLYPREQLIV 296 (559)
Q Consensus 223 ~~-~grViv---~~fasni~R-i~~i~~~a~~~~R~v~i~Grs~~~~~~~a~~~g~l~~~~~~i~~~~-~~~~p~~~~~i 296 (559)
+. ++.|.+ +.|. |-++ .+.|++-..+.|-.|.++- +... +..+ ...+.+-+.++
T Consensus 243 ~~~~~~V~l~Y~smyg-~T~~ma~aiaegl~~~gv~v~~~~---------------~~~~----~~~eI~~~i~~a~~~v 302 (388)
T COG0426 243 GQPKGKVDLIYDSMYG-NTEKMAQAIAEGLMKEGVDVEVIN---------------LEDA----DPSEIVEEILDAKGLV 302 (388)
T ss_pred CCCCCEEEEEEECCCC-CHHHHHHHHHHHHHHCCCCEEEEE---------------CCCC----CHHHHHHHHHHCCEEE
T ss_conf 6876617999842237-879999999877611599629999---------------1558----8999999987537799
Q ss_pred EEECCC-CCH----HHHHHHHCCCCCCCCCCCCCCEEEEEEECCCCHHHHHHHHHHHHHCCCEEEEECCCCCCEECCCCC
Q ss_conf 996696-326----889885202777653026896699996158861778999997651031134303566641315788
Q gi|254780869|r 297 IATGSQ-GEP----RSALAQLSRGEMRNVKLAEKDTVIFSSRAIPGNEVAIGHIKNRLVEQGVRVIAEDAECPVHVSGHP 371 (559)
Q Consensus 297 i~TGsq-ge~----~a~l~ria~~~~~~i~l~~~D~vI~ss~~ipGnE~~~~~~~n~l~~~g~~vi~~~~~~~iH~SGHa 371 (559)
+-+-+. +.+ ..+|.-+-. +..+..-..+|.|--.- ..++..+.+.|.+.|.++... .+-+-++|
T Consensus 303 vGsPT~~~~~~p~i~~~l~~v~~-----~~~~~k~~~vfgS~GW~--g~av~~i~~~l~~~g~~~~~~----~i~vk~~P 371 (388)
T COG0426 303 VGSPTINGGAHPPIQTALGYVLA-----LAPKNKLAGVFGSYGWS--GEAVDLIEEKLKDLGFEFGFD----GIEVKFRP 371 (388)
T ss_pred EECCCCCCCCCCHHHHHHHHHHH-----CCCCCCEEEEEECCCCC--CCCHHHHHHHHHHCCCEEECC----CEEEEECC
T ss_conf 95686468879219999999974-----35878559999647878--750789999998659678524----16998437
Q ss_pred CHHHHHHHHHHC
Q ss_conf 978999999754
Q gi|254780869|r 372 YPNDLKRMYQWI 383 (559)
Q Consensus 372 ~~edl~~li~~i 383 (559)
+.+||++..++.
T Consensus 372 ~~~~l~~c~e~g 383 (388)
T COG0426 372 TEEDLKKCEEAG 383 (388)
T ss_pred CHHHHHHHHHHH
T ss_conf 889999999999
No 27
>PRK11539 hypothetical protein; Provisional
Probab=99.05 E-value=6.2e-09 Score=83.27 Aligned_cols=133 Identities=17% Similarity=0.263 Sum_probs=90.1
Q ss_pred EEEEEECCCCCCCCCEEEEEEECCCCCCEEEEEECCCCCCCCCCCCEEEECCCHHHHHHHHHCCCEEEEECCCCCCCCCH
Q ss_conf 39999406868346606999951777864899977676788876750287079579876641246899605430121607
Q gi|254780869|r 5 ELVFLPLGGVGEIGMNMALYGYGSPSSRKWIMIDCGVSFPKDDLPGVDLVFPDITFIMKERKNLMAIFITHAHEDHYGAL 84 (559)
Q Consensus 5 ~i~~~~lGG~~eiG~N~~~~~~~~~~~~~~iiiD~G~~fp~~~~~gid~iiPd~~~l~~~~~~i~~i~iTH~H~DHiGal 84 (559)
++.|+-. |+| .+.+++. ++..+++|.|-.+++.+ .|-..++| ||..+.-++|+++|||+|.||+|++
T Consensus 500 ~v~~LDV-GQG----~avlI~~----~~~~~L~DtG~~~~~~~-~g~~vi~P---~L~~~Gi~lD~lvlSH~D~DH~GGl 566 (754)
T PRK11539 500 RVDMLDV-GQG----LAMVIER----NGKAILYDTGNAWPEGD-SAQQVIIP---WLRWHNLTPEGVILSHEHLDHRGGL 566 (754)
T ss_pred EEEEEEC-CCC----EEEEEEE----CCEEEEEECCCCCCCCC-CHHHHHHH---HHHHCCCCCEEEEECCCCCCCCCCH
T ss_conf 8999972-785----1899998----99789995799888887-23778899---9996799720899458850012689
Q ss_pred HHHHHHCC-CCEECCHHHHHHHHHHHHHCCCCCCCCEEEECCCCEEEECCEEEEEE-ECCC----CCCCCCEEEEEECCC
Q ss_conf 88898629-97792999999999999854886556225517555577634899998-5567----777653567987681
Q gi|254780869|r 85 HDLWSFLH-VPVYASPFAIGLLEAKRVYERVSKKIPCISFQAGDKVDVGAFSIESV-RVNH----SIPETMALVIRSPVG 158 (559)
Q Consensus 85 p~l~~~~~-~pIY~s~~t~~li~~~~~~~~~~~~~~~~~i~~~~~~~~g~~~v~~~-~~~H----sip~a~~~~I~t~~g 158 (559)
+.+++.+. ..++.+.... ...+...++..+.++.+++++ |-.. .-.+|+-+.++.++.
T Consensus 567 ~~ll~~~p~~~i~~~~~~~----------------~~~~c~~G~~~~~~g~~~~vL~P~~~~~~~~N~~ScVl~i~~g~~ 630 (754)
T PRK11539 567 ASLLHAWPMAWIRSPLNWA----------------NHLPCVRGERWQWQGLTFSVHWPLQQSNDAGNNDSCVVKVDDGKH 630 (754)
T ss_pred HHHHHHCCCEEEECCCCCC----------------CCCCEECCCEEEECCEEEEEECCCCCCCCCCCCCCEEEEEEECCE
T ss_conf 9999848830998656656----------------765511687899999899997799867899998848999998996
Q ss_pred EEEECCCC
Q ss_conf 79983340
Q gi|254780869|r 159 NIVHTGDW 166 (559)
Q Consensus 159 ~i~ytGDf 166 (559)
++++|||.
T Consensus 631 s~LltGDi 638 (754)
T PRK11539 631 SILLTGDI 638 (754)
T ss_pred EEEEECCC
T ss_conf 89996279
No 28
>COG0491 GloB Zn-dependent hydrolases, including glyoxylases [General function prediction only]
Probab=99.05 E-value=6.4e-09 Score=83.17 Aligned_cols=153 Identities=22% Similarity=0.337 Sum_probs=92.6
Q ss_pred CCEEEEEECCCCCCCCCEEEEEEECCCCCCEEEEEECCCCCCCCCCCCEEEECCCHHHHHHHHHCCCEEEEECCCCCCCC
Q ss_conf 86399994068683466069999517778648999776767888767502870795798766412468996054301216
Q gi|254780869|r 3 NEELVFLPLGGVGEIGMNMALYGYGSPSSRKWIMIDCGVSFPKDDLPGVDLVFPDITFIMKERKNLMAIFITHAHEDHYG 82 (559)
Q Consensus 3 ~~~i~~~~lGG~~eiG~N~~~~~~~~~~~~~~iiiD~G~~fp~~~~~gid~iiPd~~~l~~~~~~i~~i~iTH~H~DHiG 82 (559)
...+...+.| ..+...|++.+-.... +..++||||..-.. ...+ ...+.....+|+.|++||.|.||+|
T Consensus 9 ~~~~~~~~~~-~~~~~~~~~~~~~~~~--~~~~liDtG~~~~~-----~~~~---~~~l~~~~~di~~vilTH~H~DH~g 77 (252)
T COG0491 9 LDGITAFPIG-VGPLSGNSVYLLVDGE--GGAVLIDTGLGDAD-----AEAL---LEALAALGLDVDAILLTHGHFDHIG 77 (252)
T ss_pred CCCEEEEECC-CCCCCCCEEEEEECCC--CCEEEEECCCCCCH-----HHHH---HHHHHHCCCCCCEEEECCCCHHHHH
T ss_conf 3402787216-7656773399998489--84899949998405-----7999---9998866998778991988078782
Q ss_pred CHHHHHHHCC-CCEECCHHHHHHHHHHHH--------HCCCCCCCCEEEECCCCEEEECCEEEEEEEC-CCCCCCCCEEE
Q ss_conf 0788898629-977929999999999998--------5488655622551755557763489999855-67777653567
Q gi|254780869|r 83 ALHDLWSFLH-VPVYASPFAIGLLEAKRV--------YERVSKKIPCISFQAGDKVDVGAFSIESVRV-NHSIPETMALV 152 (559)
Q Consensus 83 alp~l~~~~~-~pIY~s~~t~~li~~~~~--------~~~~~~~~~~~~i~~~~~~~~g~~~v~~~~~-~Hsip~a~~~~ 152 (559)
++.++..... .++|..+....+...... ...............++.+.+++-.++.+++ +| .||+.++.
T Consensus 78 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~pGH-T~g~~~~~ 156 (252)
T COG0491 78 GAAVLKEAFGAAPVIAPAEVPLLLREEILRKAGVTAEAYAAPGASPLRALEDGDELDLGGLELEVLHTPGH-TPGHIVFL 156 (252)
T ss_pred HHHHHHHHCCCCEEEECCHHHHHHHCCCCCCCCCCHHHCCCCCCCCCCCCCCCCEEEECCCEEEEEECCCC-CCCCEEEE
T ss_conf 79999874587349804025544301211122100121147733344335789889978926999989988-85588999
Q ss_pred EEECCCEEEECCCCEEC
Q ss_conf 98768179983340246
Q gi|254780869|r 153 IRSPVGNIVHTGDWKLD 169 (559)
Q Consensus 153 I~t~~g~i~ytGDfk~d 169 (559)
++.+. ++|+||.-+.
T Consensus 157 ~~~~~--~l~~gD~~~~ 171 (252)
T COG0491 157 LEDGG--VLFTGDTLFA 171 (252)
T ss_pred ECCCC--EEEEECCCCC
T ss_conf 89998--9999321167
No 29
>PRK11921 metallo-beta-lactamase/flavodoxin domain-containing protein; Provisional
Probab=99.03 E-value=2.9e-07 Score=71.28 Aligned_cols=291 Identities=15% Similarity=0.199 Sum_probs=150.0
Q ss_pred HCCCEEEEECCCCCCCCCHHHHHHHC-CCCEECCHHHHHHHHHHHHHCCCCCCCCEEEECCCCEEEECCEEEEEEEC--C
Q ss_conf 12468996054301216078889862-99779299999999999985488655622551755557763489999855--6
Q gi|254780869|r 66 KNLMAIFITHAHEDHYGALHDLWSFL-HVPVYASPFAIGLLEAKRVYERVSKKIPCISFQAGDKVDVGAFSIESVRV--N 142 (559)
Q Consensus 66 ~~i~~i~iTH~H~DHiGalp~l~~~~-~~pIY~s~~t~~li~~~~~~~~~~~~~~~~~i~~~~~~~~g~~~v~~~~~--~ 142 (559)
++|+-|++.|.--||.|+|+.|++.. +++||+|+.+..+++..+. .+.++.+++.++++++|+-+++|+.+ -
T Consensus 68 ~~IdYiVvnH~EPDHsg~l~~ll~~~p~~~vv~s~~~~~~l~~~~~-----~~~~~~~Vk~gd~L~LG~~tL~F~~tP~l 142 (395)
T PRK11921 68 DKIDYIVANHGEIDHSGALPELMKEIPDTPIYCTANGAKSLKGHYH-----QDWNFVVVKTGDRLEIGSKELIFIEAPML 142 (395)
T ss_pred CCCCEEEECCCCCCHHHHHHHHHHHCCCCEEEECHHHHHHHHHHHC-----CCCCEEEECCCCEEECCCCEEEEEECCCC
T ss_conf 5699999389997578999999998899999987899999998728-----88773896789888428966999978988
Q ss_pred CCCCCCCEEEEEECCCEEEECCCCEECCCCCCCCCCCHHHHHHCCCCCCEE--EEECCCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf 777765356798768179983340246776654238988998608788299--996356457888777787999999999
Q gi|254780869|r 143 HSIPETMALVIRSPVGNIVHTGDWKLDDDAILGDVTDKDSLCAIGNEGILA--LMCDSTNAMREGTCISEKGIKKNIYDI 220 (559)
Q Consensus 143 Hsip~a~~~~I~t~~g~i~ytGDfk~d~~p~~g~~~d~~~l~~~~~~gv~~--Li~esT~~~~~~~~~sE~~v~~~i~~~ 220 (559)
| =||++.-.. +.-+|+||.|+ |..+ .+....+.. .++. +.-|.-.=...--.|--..+...++.+
T Consensus 143 H-WPdtm~Ty~--~edkiLFs~Da-FG~h-----~a~~~~fdd----~~d~~~~~~ea~~YY~nI~~p~~~~V~~~l~kl 209 (395)
T PRK11921 143 H-WPDSMFCYL--TGDNILFSNDA-FGQH-----YASELMYND----LVDQGELYQEAIKYYANILTPFSPLVIKKIEEI 209 (395)
T ss_pred C-CCCCEEEEE--CCCCEEECCCC-CCCC-----CCCCCCCCC----CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 7-888437997--57877860355-4454-----337100023----354055699999999998663189999999999
Q ss_pred HHHCC--CCEEEEEC----HHHHHHHHHHHHHH--HHHCCEEEEECHHHHHHHH-HHHH--CCCCCC-CCCCC-------
Q ss_conf 86279--83999941----47789999999999--8718869984486999999-8874--287677-65422-------
Q gi|254780869|r 221 MKNAK--GCVLVTTF----SSSVSRIRSIIDIA--EQIGRKIVLLGSSLKRVVS-VAID--VGIIKK-DQLFL------- 281 (559)
Q Consensus 221 ~~~~~--grViv~~f----asni~Ri~~i~~~a--~~~~R~v~i~Grs~~~~~~-~a~~--~g~l~~-~~~~i------- 281 (559)
- ..+ =++|.++- -+|+.++...++-= .+..+++++.--||.-+.+ +|.. .|.-.. ...-+
T Consensus 210 ~-~l~l~i~~IaPsHGpi~r~~~~~i~~~Y~~ws~~~~~~~v~IvY~SmyG~T~~mA~aia~gl~~~~~gv~V~~~d~~~ 288 (395)
T PRK11921 210 L-SLNLPVDMICPSHGVIWRDNPLQIVEKYLEWAANYQENQITIIYDTMWNSTRRMAEAIAEGIKKANPDVTVKLFNSAK 288 (395)
T ss_pred H-HCCCCCCEEECCCCCEEECCHHHHHHHHHHHHHCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHCCCCCEEEEEECCC
T ss_conf 8-479997699889850544799999999999974677774999997760679999999999998408996699998988
Q ss_pred -CH-HHHCCCCCCCEEEEEECCCC-CHHHHHHHHCCCCCCCCCCCCCCEEEEEEECCCCHHHHHHHHHHHHHCCCEEEEE
Q ss_conf -65-66223880208999966963-2688988520277765302689669999615886177899999765103113430
Q gi|254780869|r 282 -SD-ESFGLYPREQLIVIATGSQG-EPRSALAQLSRGEMRNVKLAEKDTVIFSSRAIPGNEVAIGHIKNRLVEQGVRVIA 358 (559)
Q Consensus 282 -~~-~~~~~~p~~~~~ii~TGsqg-e~~a~l~ria~~~~~~i~l~~~D~vI~ss~~ipGnE~~~~~~~n~l~~~g~~vi~ 358 (559)
+. +-+...-+-+.+++.|-+.+ +.+...+-+... -..++.+..=..+|.|--.-| .++..+.+.|...|.+++.
T Consensus 289 ~~~s~i~~~i~~a~~~ilGsPT~n~~~~p~i~~~l~~-l~~~~~~~K~~~~FGSyGWsg--ea~~~i~~~l~~~g~~~~~ 365 (395)
T PRK11921 289 SDKNDIITEVFKSKAILVGSPTINRGILSSTAGILEE-IKGLGFKEKKAAAFGSYGWSG--ESVKIITERLKKAGFEIVN 365 (395)
T ss_pred CCHHHHHHHHHHCCCEEEECCCCCCCCHHHHHHHHHH-HHHCCCCCCEEEEEECCCCCC--HHHHHHHHHHHHCCCEEEC
T ss_conf 9999999999866958997267377645899999999-972766798899996178787--7899999999987992817
Q ss_pred CCCCCCEECCCCCCHHHHHHHHHH
Q ss_conf 356664131578897899999975
Q gi|254780869|r 359 EDAECPVHVSGHPYPNDLKRMYQW 382 (559)
Q Consensus 359 ~~~~~~iH~SGHa~~edl~~li~~ 382 (559)
. .+.+-+-|+.+||++..++
T Consensus 366 ~----~l~vk~~P~ee~l~~~~e~ 385 (395)
T PRK11921 366 D----GLRELWNPDDEALDRCRSF 385 (395)
T ss_pred C----CEEEEECCCHHHHHHHHHH
T ss_conf 9----6799618998999999999
No 30
>COG1237 Metal-dependent hydrolases of the beta-lactamase superfamily II [General function prediction only]
Probab=98.89 E-value=1.3e-08 Score=81.09 Aligned_cols=76 Identities=28% Similarity=0.465 Sum_probs=50.7
Q ss_pred CCCCCEEEEEEECCCCCCEEEEEECCCCCCCCCCCCEEEECCCHHHHHHHHHCCCEEEEECCCCCCCCCHHHHHHHC--C
Q ss_conf 83466069999517778648999776767888767502870795798766412468996054301216078889862--9
Q gi|254780869|r 15 GEIGMNMALYGYGSPSSRKWIMIDCGVSFPKDDLPGVDLVFPDITFIMKERKNLMAIFITHAHEDHYGALHDLWSFL--H 92 (559)
Q Consensus 15 ~eiG~N~~~~~~~~~~~~~~iiiD~G~~fp~~~~~gid~iiPd~~~l~~~~~~i~~i~iTH~H~DHiGalp~l~~~~--~ 92 (559)
.+=|=+| ++| .+...+|+|+|.. +.. ++-+...|.-+..++++++|||+|.||+|+|+|+...- +
T Consensus 19 a~hGfS~-LVE----~~~~riLFDtG~~---~~~-----ll~Na~~lgvd~~did~vvlSHgH~DH~GGL~~~~~~~~~~ 85 (259)
T COG1237 19 AEHGFSA-LVE----DEGTRILFDTGTD---SDV-----LLHNARLLGVDLRDIDAVVLSHGHYDHTGGLPYLLEENNPG 85 (259)
T ss_pred CCCCEEE-EEE----CCCEEEEEECCCC---CHH-----HHHHHHHCCCCCCCCCEEEEECCCCCCCCCHHHHHHCCCCC
T ss_conf 5675499-997----5871799957998---578-----88779981998134747998578731347567687526778
Q ss_pred CCEECCHHHHH
Q ss_conf 97792999999
Q gi|254780869|r 93 VPVYASPFAIG 103 (559)
Q Consensus 93 ~pIY~s~~t~~ 103 (559)
+|||++|-...
T Consensus 86 i~v~ahp~af~ 96 (259)
T COG1237 86 IPVYAHPDAFK 96 (259)
T ss_pred CEEEECHHHHH
T ss_conf 50786858876
No 31
>PRK05452 anaerobic nitric oxide reductase flavorubredoxin; Provisional
Probab=98.87 E-value=8.7e-08 Score=75.03 Aligned_cols=94 Identities=26% Similarity=0.414 Sum_probs=77.8
Q ss_pred HCCCEEEEECCCCCCCCCHHHHHHHC-CCCEECCHHHHHHHHHHHHHCCCCCCCCEEEECCCCEEEECC-EEEEEEEC--
Q ss_conf 12468996054301216078889862-997792999999999999854886556225517555577634-89999855--
Q gi|254780869|r 66 KNLMAIFITHAHEDHYGALHDLWSFL-HVPVYASPFAIGLLEAKRVYERVSKKIPCISFQAGDKVDVGA-FSIESVRV-- 141 (559)
Q Consensus 66 ~~i~~i~iTH~H~DHiGalp~l~~~~-~~pIY~s~~t~~li~~~~~~~~~~~~~~~~~i~~~~~~~~g~-~~v~~~~~-- 141 (559)
++|+-|++.|.--||.|+|+.|+... +++||+|+.+...++.... .++.++..++.++++++|+ -+++|+++
T Consensus 70 ~~IDYIIvnH~EpDHSGsL~~Lle~~P~~~Iv~s~~a~~~l~~~~~----~~~~~~~vVk~Gd~LdLG~GktL~Fi~tPm 145 (479)
T PRK05452 70 ADIDYIVINHAEEDHAGALTELMAQIPDTPIYCTANAIDSINGHHH----HPEWNFNVVKTGDTLDIGNGKQLIFVETPM 145 (479)
T ss_pred CCCCEEEECCCCCCHHHHHHHHHHHCCCCEEEECHHHHHHHHHHHC----CCCCCEEEECCCCEEECCCCCEEEEEECCC
T ss_conf 6798899689997547689999998899999987899999998527----876673784689857269984689961898
Q ss_pred CCCCCCCCEEEEEECCCEEEECCCC
Q ss_conf 6777765356798768179983340
Q gi|254780869|r 142 NHSIPETMALVIRSPVGNIVHTGDW 166 (559)
Q Consensus 142 ~Hsip~a~~~~I~t~~g~i~ytGDf 166 (559)
-| =||++.-.+ +.-+|+||.|+
T Consensus 146 lH-WPDsM~TY~--~edkILFS~Da 167 (479)
T PRK05452 146 LH-WPDSMMTYL--TGDAVLFSNDA 167 (479)
T ss_pred CC-CCCCEEEEE--CCCCEEEECCC
T ss_conf 77-887326886--26756861255
No 32
>COG2333 ComEC Predicted hydrolase (metallo-beta-lactamase superfamily) [General function prediction only]
Probab=98.85 E-value=2e-07 Score=72.45 Aligned_cols=141 Identities=22% Similarity=0.298 Sum_probs=89.9
Q ss_pred EEEEECCCCCCCCCCCCEEEECCCHHHHHHHH-HCCCEEEEECCCCCCCCCHHHHHHHCCCC-EECCHHHHHHHHHHHHH
Q ss_conf 89997767678887675028707957987664-12468996054301216078889862997-79299999999999985
Q gi|254780869|r 34 WIMIDCGVSFPKDDLPGVDLVFPDITFIMKER-KNLMAIFITHAHEDHYGALHDLWSFLHVP-VYASPFAIGLLEAKRVY 111 (559)
Q Consensus 34 ~iiiD~G~~fp~~~~~gid~iiPd~~~l~~~~-~~i~~i~iTH~H~DHiGalp~l~~~~~~p-IY~s~~t~~li~~~~~~ 111 (559)
.+++|.|.. -|-+.|+| ||++.. .+|+.+++||+|.||+|+++.+++.+.+| +|.......-....+.
T Consensus 65 ~~l~dtg~~------~~~~~iip---~Lk~~GV~~iD~lIlTH~d~DHiGg~~~vl~~~~v~~~~i~~~~~~~~~~~~~- 134 (293)
T COG2333 65 TILYDTGNS------MGQDVIIP---YLKSLGVRKLDQLILTHPDADHIGGLDEVLKTIKVPELWIYAGSDSTSTFVLR- 134 (293)
T ss_pred EEEEECCCC------CCCEEEHH---HHHHCCCCCCCEEEECCCCCCCCCCHHHHHHHCCCCCEEEECCCCCCCHHHHH-
T ss_conf 188625754------47243635---57674986013789316874444789999852887717982787765145565-
Q ss_pred CCCCCCCCEEEECCCCEEEECCEEEEEE-ECCC----CCCCCCEEEEEECCCEEEECCCCEECCCCCCCCCCCHHHHHHC
Q ss_conf 4886556225517555577634899998-5567----7776535679876817998334024677665423898899860
Q gi|254780869|r 112 ERVSKKIPCISFQAGDKVDVGAFSIESV-RVNH----SIPETMALVIRSPVGNIVHTGDWKLDDDAILGDVTDKDSLCAI 186 (559)
Q Consensus 112 ~~~~~~~~~~~i~~~~~~~~g~~~v~~~-~~~H----sip~a~~~~I~t~~g~i~ytGDfk~d~~p~~g~~~d~~~l~~~ 186 (559)
....+....+.++.+++++..++++ |... .--+|+.+.++..+.++++|||.- ......+.+.
T Consensus 135 ---~~~~~~~~~~~G~~~~~~~~~f~vl~P~~~~~~~~N~~S~Vl~v~~g~~s~LlTGD~e---------~~~E~~l~~~ 202 (293)
T COG2333 135 ---DAGIPVRSCKAGDSWQWGGVVFQVLSPVGGVSDDLNNDSCVLRVTFGGNSFLLTGDLE---------EKGEKLLKKY 202 (293)
T ss_pred ---HCCCCEECCCCCCEEEECCEEEEEECCCCCCCCCCCCCCEEEEEEECCEEEEEECCCC---------HHHHHHHHHH
T ss_conf ---3377412001275478888579997688666655567625999995891699965787---------0568999843
Q ss_pred CCC-CCEEEEE
Q ss_conf 878-8299996
Q gi|254780869|r 187 GNE-GILALMC 196 (559)
Q Consensus 187 ~~~-gv~~Li~ 196 (559)
+.+ .+|+|..
T Consensus 203 ~~~l~~dVLkV 213 (293)
T COG2333 203 GPDLRADVLKV 213 (293)
T ss_pred CCCCCCEEEEE
T ss_conf 78744208981
No 33
>COG2220 Predicted Zn-dependent hydrolases of the beta-lactamase fold [General function prediction only]
Probab=98.77 E-value=7.5e-07 Score=68.30 Aligned_cols=134 Identities=27% Similarity=0.341 Sum_probs=87.9
Q ss_pred CCCEEEEEEECCCCCCEEEEEECCCCCCCC--CCCCEEEECCCHHHHHHHHHCCCEEEEECCCCCCCCCHHHHHHHC-CC
Q ss_conf 466069999517778648999776767888--767502870795798766412468996054301216078889862-99
Q gi|254780869|r 17 IGMNMALYGYGSPSSRKWIMIDCGVSFPKD--DLPGVDLVFPDITFIMKERKNLMAIFITHAHEDHYGALHDLWSFL-HV 93 (559)
Q Consensus 17 iG~N~~~~~~~~~~~~~~iiiD~G~~fp~~--~~~gid~iiPd~~~l~~~~~~i~~i~iTH~H~DHiGalp~l~~~~-~~ 93 (559)
.|-+|.++++.. ..+++|-.+.-+.. ..+| +. .......+++|++||.|.||++.-....... ..
T Consensus 12 lGha~~lie~~~----~~iliDP~~~~~~~~~~~~~-----~~---~~~~~~~~D~ilitH~H~DHl~~~~~~~~~~~~~ 79 (258)
T COG2220 12 LGHAAFLIETGG----KRILIDPVLSGAPSPSNFPG-----GL---FEDLLPPIDYILITHDHYDHLDDETLIALRTNKA 79 (258)
T ss_pred EEEEEEEEEECC----EEEEECCCCCCCCCCCCCCC-----CC---CHHHCCCCCEEEEECCCCHHCCCHHHHHHHCCCC
T ss_conf 512689999588----68998998678877442256-----67---6432478888997368611057076655424887
Q ss_pred CEECCHHHHHHHHHHHHHCCCCCCCCEEEECCCCEEEECCEEEEEEECCCCC----C--------CCCEEEEEECCCEEE
Q ss_conf 7792999999999999854886556225517555577634899998556777----7--------653567987681799
Q gi|254780869|r 94 PVYASPFAIGLLEAKRVYERVSKKIPCISFQAGDKVDVGAFSIESVRVNHSI----P--------ETMALVIRSPVGNIV 161 (559)
Q Consensus 94 pIY~s~~t~~li~~~~~~~~~~~~~~~~~i~~~~~~~~g~~~v~~~~~~Hsi----p--------~a~~~~I~t~~g~i~ 161 (559)
+++..+..+..+ +...+ .....+..+++++.++++++++++.++.|+- + ...++.++++++++.
T Consensus 80 ~~~~~p~~~~~~---~~~~g-~~~~~~~~~~~g~~~~~~~~~i~~~~a~h~~~~~~~~~~~~~~~~~~~~vi~~~g~~iy 155 (258)
T COG2220 80 PVVVVPLGAGDL---LIRDG-VEAERVHELGWGDVIELGDLEITAVPAYHVSARHLPGRGIRPTGLWVGYVIETPGGRVY 155 (258)
T ss_pred CEEECCCHHHHH---HHCCC-CCCCEEEECCCCCEEECCCCEEEEEEEEECCCCCCCCCCCCCCCCEEEEEEEECCEEEE
T ss_conf 489646034444---42158-77205561478863973564698886263243335887743467616999960992799
Q ss_pred ECCCC
Q ss_conf 83340
Q gi|254780869|r 162 HTGDW 166 (559)
Q Consensus 162 ytGDf 166 (559)
|.||-
T Consensus 156 h~GDt 160 (258)
T COG2220 156 HAGDT 160 (258)
T ss_pred ECCCC
T ss_conf 62567
No 34
>KOG2121 consensus
Probab=98.74 E-value=1.7e-08 Score=80.09 Aligned_cols=45 Identities=24% Similarity=0.166 Sum_probs=33.1
Q ss_pred HCCCEEEEECCCCCCCCCHHHHHHHC---CC----CEECCHHHHHHHHHHHH
Q ss_conf 12468996054301216078889862---99----77929999999999998
Q gi|254780869|r 66 KNLMAIFITHAHEDHYGALHDLWSFL---HV----PVYASPFAIGLLEAKRV 110 (559)
Q Consensus 66 ~~i~~i~iTH~H~DHiGalp~l~~~~---~~----pIY~s~~t~~li~~~~~ 110 (559)
.+++-||+|--+.+-+|++|.++-.+ +. -.|+++.-..++..+..
T Consensus 96 sk~~~iflt~~~w~~~GglpGl~ltl~~~G~~g~~~l~gP~~l~~~l~~mr~ 147 (746)
T KOG2121 96 SKLDSIFLTRVCWSSCGGLPGLLLTLADIGEPGPVVLHGPSDLNYILSAMRY 147 (746)
T ss_pred HHHHHEEEECCCHHHHCCCCCCEEEHHHCCCCCCCCCCCCHHHHHHHHHHHH
T ss_conf 1244437502448874788641554644078986440286368899999887
No 35
>PRK04286 hypothetical protein; Provisional
Probab=98.74 E-value=2.4e-06 Score=64.69 Aligned_cols=220 Identities=18% Similarity=0.225 Sum_probs=119.8
Q ss_pred EEEECCC--CCCCCCEEEEEEECCCCCCEEEEEECCCCCC--CCCCCCEEEECCC---HHHHH-------HHHHCCCEEE
Q ss_conf 9994068--6834660699995177786489997767678--8876750287079---57987-------6641246899
Q gi|254780869|r 7 VFLPLGG--VGEIGMNMALYGYGSPSSRKWIMIDCGVSFP--KDDLPGVDLVFPD---ITFIM-------KERKNLMAIF 72 (559)
Q Consensus 7 ~~~~lGG--~~eiG~N~~~~~~~~~~~~~~iiiD~G~~fp--~~~~~gid~iiPd---~~~l~-------~~~~~i~~i~ 72 (559)
++.|||- +|-.++ |++++. .+-.|+||.|+..+ ...+| |. +..++ +..++-+-|+
T Consensus 2 ki~pla~eSLGvRSm-a~~Vet----~d~~IlIDPgvaLap~RygLp------Php~E~~~l~~~r~kI~~~a~~advvv 70 (294)
T PRK04286 2 KIIPLASESLGVRSM-ATFVET----RDVRILIDPGVSLAPRRYGLP------PHPIELERLEEVREKILELAKKADVVT 70 (294)
T ss_pred EEEEEEECCCCCCEE-EEEEEE----CCEEEEECCCHHCCCCCCCCC------CCHHHHHHHHHHHHHHHHHHHHCCEEE
T ss_conf 569953056774325-799983----885799777021187667989------980999999999999999984299999
Q ss_pred EECCCCCCCCC--H-HHHHHHC--CCCEECC------HHHHHH--H---HHHHHHCCCCCCCCEEEECCCCEEEECCEEE
Q ss_conf 60543012160--7-8889862--9977929------999999--9---9999854886556225517555577634899
Q gi|254780869|r 73 ITHAHEDHYGA--L-HDLWSFL--HVPVYAS------PFAIGL--L---EAKRVYERVSKKIPCISFQAGDKVDVGAFSI 136 (559)
Q Consensus 73 iTH~H~DHiGa--l-p~l~~~~--~~pIY~s------~~t~~l--i---~~~~~~~~~~~~~~~~~i~~~~~~~~g~~~v 136 (559)
|||.|-||.-- . +|....- ...||.. ..+..+ - ++............-..+..+..+++|++.+
T Consensus 71 ISHYHyDH~~p~~~~~Y~~~~~~~~~eiY~gK~~~~K~P~~~IN~SQr~Ra~~flk~~~~~~~~i~~aDg~~f~~g~~~i 150 (294)
T PRK04286 71 ISHYHYDHHTPFYESVYEATSEEEYKEIYGGKIVLIKDPTENINWSQRRRAYGFLKAVKGIAKKIEYADGKEFRFGGTVI 150 (294)
T ss_pred EECCCCCCCCCCCCCHHHCCCCCCHHHHHCCCEEEECCCHHHCCHHHHHHHHHHHHHHHHHCCEEEECCCCEEEECCEEE
T ss_conf 91336667785534301024442358885785899819426438889999999999765204348975886688788889
Q ss_pred EEE-ECCCCCCCC-C----EEEEEECCCEEEECCCCEECCCCCCCCCCCHHHHHHCCCCCCEEEEECCCCCCCCCCCCCH
Q ss_conf 998-556777765-3----5679876817998334024677665423898899860878829999635645788877778
Q gi|254780869|r 137 ESV-RVNHSIPET-M----ALVIRSPVGNIVHTGDWKLDDDAILGDVTDKDSLCAIGNEGILALMCDSTNAMREGTCISE 210 (559)
Q Consensus 137 ~~~-~~~Hsip~a-~----~~~I~t~~g~i~ytGDfk~d~~p~~g~~~d~~~l~~~~~~gv~~Li~esT~~~~~~~~~sE 210 (559)
+|- |+-|-..|+ . ++.|..++.+++||.|. .|. .+.+....+-+...++++.++--..-.++ .|+
T Consensus 151 ~fS~pvpHG~~gsklG~Vi~~~I~dg~~~~~~~SDv-------qG~-~~~e~v~~il~~~P~ivii~GPPtYL~gr-~~~ 221 (294)
T PRK04286 151 EFSPPVPHGAEGSKLGYVVMVRISDGDESFVFASDV-------QGP-LNDEAVEFILEKKPTVVIIGGPPTYLLYR-VSG 221 (294)
T ss_pred EECCCCCCCCCCCCCCEEEEEEEECCCEEEEECCCC-------CCC-CCHHHHHHHHHCCCCEEEECCCCHHHHHH-CCH
T ss_conf 966887789888855679999997497689980556-------676-87899999986399989967984565220-467
Q ss_pred HHHHHHHHHH---HHHCCCCEEEEECHHHH-------HHHHHHHHHHHH
Q ss_conf 7999999999---86279839999414778-------999999999987
Q gi|254780869|r 211 KGIKKNIYDI---MKNAKGCVLVTTFSSSV-------SRIRSIIDIAEQ 249 (559)
Q Consensus 211 ~~v~~~i~~~---~~~~~grViv~~fasni-------~Ri~~i~~~a~~ 249 (559)
..++.+++++ +.+....+|+ +.++ .++..+.+.|++
T Consensus 222 ~~le~~i~Nl~~ii~~~~~~lIl---DHHllRD~~~re~l~~v~~~ae~ 267 (294)
T PRK04286 222 EDLEKGIENLERIILLRPKTLIL---DHHLLRDINYREKLKELAEVAES 267 (294)
T ss_pred HHHHHHHHHHHHHHHHCCCEEEE---ECHHHCCCCHHHHHHHHHHHHHH
T ss_conf 66999999999999818987998---14133052689999999987654
No 36
>KOG1138 consensus
Probab=98.59 E-value=3e-05 Score=56.81 Aligned_cols=295 Identities=15% Similarity=0.143 Sum_probs=160.1
Q ss_pred HCCCEEEEECCCCCCCCCHHHHHHHC--CCCEECCHHHHHHH----HHHHHHC---------CCCCCC------------
Q ss_conf 12468996054301216078889862--99779299999999----9999854---------886556------------
Q gi|254780869|r 66 KNLMAIFITHAHEDHYGALHDLWSFL--HVPVYASPFAIGLL----EAKRVYE---------RVSKKI------------ 118 (559)
Q Consensus 66 ~~i~~i~iTH~H~DHiGalp~l~~~~--~~pIY~s~~t~~li----~~~~~~~---------~~~~~~------------ 118 (559)
+-||.|+||..| .+-||||+-.-. .-.||+|..|..+= +...... ..|++.
T Consensus 95 stiDvILISNy~--~mlgLPfiTentGF~gkiY~TE~t~qiGrllMEelv~fier~p~~~S~~~Wk~k~~~~~lpsplk~ 172 (653)
T KOG1138 95 STIDVILISNYM--GMLGLPFITENTGFFGKIYATEPTAQIGRLLMEELVSFIERFPKASSAPLWKKKLDSELLPSPLKK 172 (653)
T ss_pred CCEEEEEECCHH--HHCCCCEEECCCCCEEEEEEECHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCCHH
T ss_conf 430399971600--200563364178832689982248999899999999999855455664355542156645777610
Q ss_pred ---------------------CEEEECCCCEEEE-CCEEEEEEECCCCCCCCCEEEEEECCCEEEECCCCEECCCCCCCC
Q ss_conf ---------------------2255175555776-348999985567777653567987681799833402467766542
Q gi|254780869|r 119 ---------------------PCISFQAGDKVDV-GAFSIESVRVNHSIPETMALVIRSPVGNIVHTGDWKLDDDAILGD 176 (559)
Q Consensus 119 ---------------------~~~~i~~~~~~~~-g~~~v~~~~~~Hsip~a~~~~I~t~~g~i~ytGDfk~d~~p~~g~ 176 (559)
+...+...+++++ |.+.||+...+| ..||+-+.|.|+.+++-|-.+=.+-.
T Consensus 173 ~~~~~~Wr~~ysl~Dv~sclsKVq~v~f~ekidlfga~~vtplsSG~-~lGSsnW~I~t~nek~sYvS~Ss~lt------ 245 (653)
T KOG1138 173 AVFLGSWRRLYSLDDVESCLSKVQGVGFAEKIDLFGALIVTPLSSGY-DLGSSNWLINTPNEKLSYVSGSSFLT------ 245 (653)
T ss_pred HCCCCCEEEEEEHHHHHHHHHHHEECCCCEEEECCCEEEEEECCCCC-CCCCCCEEEECCCCCEEEEECCCCCC------
T ss_conf 10412103654566788888765241411045102348998624554-03421047745886368874676434------
Q ss_pred CCCHHHHHHCCCCCCEEEEECCCCCCCCCCCCCH--HHHHHHHHHHHHHCCCCEEEEECHHHH-----HHHHHHHHHHHH
Q ss_conf 3898899860878829999635645788877778--799999999986279839999414778-----999999999987
Q gi|254780869|r 177 VTDKDSLCAIGNEGILALMCDSTNAMREGTCISE--KGIKKNIYDIMKNAKGCVLVTTFSSSV-----SRIRSIIDIAEQ 249 (559)
Q Consensus 177 ~~d~~~l~~~~~~gv~~Li~esT~~~~~~~~~sE--~~v~~~i~~~~~~~~grViv~~fasni-----~Ri~~i~~~a~~ 249 (559)
++..-+.+.+-+.+|+||.-|.. .-+..++.| -++..++....++ .|.|+++||.|-+ +-+.+.++-|--
T Consensus 246 -th~r~md~a~Lk~~Dvli~T~ls-ql~tanpd~m~gelc~nvt~~~rn-~GsvL~PcyPsGviydl~Ecls~~idna~l 322 (653)
T KOG1138 246 -THPRPMDQAGLKETDVLIYTGLS-QLPTANPDEMGGELCKNVTLTGRN-HGSVLLPCYPSGVIYDLIECLSQDIDNAGL 322 (653)
T ss_pred -CCCCCCCCCCCCCCCEEEEECCC-CCCCCCCCCHHHHHHHHHHHHHHC-CCCEEEECCCCCHHHHHHHHHHHCCCCCCC
T ss_conf -68864332445544589981533-256678421024688789998644-881651026772166778774111123677
Q ss_pred HCCEEEEEC---HHHHH-------HHHHHHHCC-CCCCCC----CCCCHHHHCCCC---------CCCEEEEEECCCCCH
Q ss_conf 188699844---86999-------999887428-767765----422656622388---------020899996696326
Q gi|254780869|r 250 IGRKIVLLG---SSLKR-------VVSVAIDVG-IIKKDQ----LFLSDESFGLYP---------REQLIVIATGSQGEP 305 (559)
Q Consensus 250 ~~R~v~i~G---rs~~~-------~~~~a~~~g-~l~~~~----~~i~~~~~~~~p---------~~~~~ii~TGsqge~ 305 (559)
.+-++++.. .|... .+..|+... |+..++ .++....++.|+ -+.-+++.+|..-
T Consensus 323 s~~P~yfISpvadSsla~s~ilaEwls~akqnkvylpe~p~~hs~lI~~~rlkiy~sl~g~fSndfrqpcvvf~~H~S-- 400 (653)
T KOG1138 323 SDTPIYFISPVADSSLATSDILAEWLSLAKQNKVYLPEAPFPHSTLITINRLKIYLSLLGLFSNDFRQPCVVFMGHPS-- 400 (653)
T ss_pred CCCCCEEECCCCHHHHHHHHHHHHHHHHHHCCCEECCCCCCCCCEEEEECCEEEHHHHHHHHHHHCCCCEEEECCCCC--
T ss_conf 677606855541545667789999997633140435689998755875063232588998876651266057627853--
Q ss_pred HHHHHHHCCCCCC--CCCCCCCCEEEEEEECCCCHHHHHHHHHHHHHCCCEEEEECCCCCCEECCCCCCHHHHHHHHHHC
Q ss_conf 8898852027776--53026896699996158861778999997651031134303566641315788978999999754
Q gi|254780869|r 306 RSALAQLSRGEMR--NVKLAEKDTVIFSSRAIPGNEVAIGHIKNRLVEQGVRVIAEDAECPVHVSGHPYPNDLKRMYQWI 383 (559)
Q Consensus 306 ~a~l~ria~~~~~--~i~l~~~D~vI~ss~~ipGnE~~~~~~~n~l~~~g~~vi~~~~~~~iH~SGHa~~edl~~li~~i 383 (559)
-|+..-.|- -+-+.+..+|||--+.+| .+ ..+.-+...-.+.++-. +-++ -.-..+.++++-+
T Consensus 401 ----lRfgdv~h~~e~~g~sp~NsvI~tdpD~~-~~----~vl~PfrpLamK~i~cp----idtr--lnfqql~kLlkel 465 (653)
T KOG1138 401 ----LRFGDVVHFLECWGLSPKNSVIFTDPDFS-YL----LVLAPFRPLAMKIIYCP----IDTR--LNFQQLPKLLKEL 465 (653)
T ss_pred ----HHHHHHHHHHHHHCCCCCCCEEEECCCCC-HH----HHHCCCCCCCCEEEECC----CCCC--CCHHHHHHHHHHH
T ss_conf ----00337899999964798875688579975-35----55257765420368645----3034--3678899999973
Q ss_pred CCCEEE
Q ss_conf 953999
Q gi|254780869|r 384 RPQVLV 389 (559)
Q Consensus 384 kPk~~I 389 (559)
+|++++
T Consensus 466 qPk~vl 471 (653)
T KOG1138 466 QPKIVL 471 (653)
T ss_pred CCCEEE
T ss_conf 887898
No 37
>KOG0813 consensus
Probab=98.57 E-value=6.4e-07 Score=68.82 Aligned_cols=94 Identities=22% Similarity=0.343 Sum_probs=71.8
Q ss_pred HHHCCCEEEEECCCCCCCCCHHHHHHH--CCCCEECCHHHHHHHHHHHHHCCCCCCCCEEEECCCCEEEECCEEEEEEEC
Q ss_conf 641246899605430121607888986--299779299999999999985488655622551755557763489999855
Q gi|254780869|r 64 ERKNLMAIFITHAHEDHYGALHDLWSF--LHVPVYASPFAIGLLEAKRVYERVSKKIPCISFQAGDKVDVGAFSIESVRV 141 (559)
Q Consensus 64 ~~~~i~~i~iTH~H~DHiGalp~l~~~--~~~pIY~s~~t~~li~~~~~~~~~~~~~~~~~i~~~~~~~~g~~~v~~~~~ 141 (559)
..-++.+||.||-|.||+||+.-+.+. +++.+|++.. .+ . +.. -..++.++++.+|+.+|+.+++
T Consensus 48 ~~~~l~~Il~THhH~DHsGGn~~i~~~~~~~~~v~g~~~------~r-----~-~~i-~~~~~~~e~~~~~g~~v~~l~T 114 (265)
T KOG0813 48 ENRRLTAILTTHHHYDHSGGNEDIKREIPYDIKVIGGAD------DR-----I-PGI-TRGLKDGETVTVGGLEVRCLHT 114 (265)
T ss_pred CCCCEEEEEECCCCCCCCCCHHHHHHHCCCCCEEECCCH------HC-----C-CCC-CCCCCCCCEEEECCEEEEEEEC
T ss_conf 047646899522242146767888741357827966870------00-----7-553-4467888679989888999838
Q ss_pred CCCCCCCCEEEEE-ECCCEEEECCCCEECC
Q ss_conf 6777765356798-7681799833402467
Q gi|254780869|r 142 NHSIPETMALVIR-SPVGNIVHTGDWKLDD 170 (559)
Q Consensus 142 ~Hsip~a~~~~I~-t~~g~i~ytGDfk~d~ 170 (559)
.-.--|.+.|.+. +++-.-+||||--|+.
T Consensus 115 PgHT~~hi~~~~~~~~~e~~iFtGDtlf~~ 144 (265)
T KOG0813 115 PGHTAGHICYYVTESTGERAIFTGDTLFGA 144 (265)
T ss_pred CCCCCCCEEEEEECCCCCCEEEECCCEEEC
T ss_conf 985688089995157899758857826535
No 38
>COG2248 Predicted hydrolase (metallo-beta-lactamase superfamily) [General function prediction only]
Probab=98.53 E-value=3.4e-05 Score=56.39 Aligned_cols=230 Identities=20% Similarity=0.262 Sum_probs=129.3
Q ss_pred EEEECCCCCCCC--CEEEEEEECCCCCCEEEEEECCCCCCC--CCCCCEEEECCC---HHH-------HHHHHHCCCEEE
Q ss_conf 999406868346--606999951777864899977676788--876750287079---579-------876641246899
Q gi|254780869|r 7 VFLPLGGVGEIG--MNMALYGYGSPSSRKWIMIDCGVSFPK--DDLPGVDLVFPD---ITF-------IMKERKNLMAIF 72 (559)
Q Consensus 7 ~~~~lGG~~eiG--~N~~~~~~~~~~~~~~iiiD~G~~fp~--~~~~gid~iiPd---~~~-------l~~~~~~i~~i~ 72 (559)
++.||+- +.-| .-|+.++. .+-.|+||.|+..+- ..+| |. +.- +.+..++.+-|.
T Consensus 2 kV~Pla~-eSLGVRSmAt~vet----~dv~ILiDpGVsLaPkRy~LP------Ph~~E~erl~~~r~~i~~~ak~a~Vit 70 (304)
T COG2248 2 KVIPLAS-ESLGVRSMATFVET----KDVGILIDPGVSLAPKRYGLP------PHQRELERLRQAREKIQRYAKKADVIT 70 (304)
T ss_pred CEEECCC-CCCCHHHHHHEEEC----CCEEEEECCCCCCCCCCCCCC------CCHHHHHHHHHHHHHHHHHHHHCCEEE
T ss_conf 3253131-23234424321321----773699778654485346899------887999999999999999986488899
Q ss_pred EECCCCCCCCCHHHHHHH----C--CCCEECCH------HHHHHHHH-HHHH----CCCCCCCCEEEECCCCEEEECCEE
Q ss_conf 605430121607888986----2--99779299------99999999-9985----488655622551755557763489
Q gi|254780869|r 73 ITHAHEDHYGALHDLWSF----L--HVPVYASP------FAIGLLEA-KRVY----ERVSKKIPCISFQAGDKVDVGAFS 135 (559)
Q Consensus 73 iTH~H~DHiGalp~l~~~----~--~~pIY~s~------~t~~li~~-~~~~----~~~~~~~~~~~i~~~~~~~~g~~~ 135 (559)
|||.|.||.- ||.-.. . ...||+.+ .|-.+=+. +... ........-..+..+.++++|.+.
T Consensus 71 ISHYHYDHht--Pf~~~~y~~s~e~~~eiY~gK~lLlKhPte~IN~SQ~~Ra~~fl~~~~~~~~~ie~ADgk~f~fG~t~ 148 (304)
T COG2248 71 ISHYHYDHHT--PFFDGIYEASGETAKEIYKGKLLLLKHPTENINRSQRRRAYRFLESLKDIAREIEYADGKTFEFGGTV 148 (304)
T ss_pred EEEECCCCCC--CCCCCHHHHCCCCHHHHHCCCEEEECCCHHHHCHHHHHHHHHHHHHHHHHCCEEEECCCCEEEECCEE
T ss_conf 8640124578--66552123103246777358378851955655778787899999876431114683378658757789
Q ss_pred EEEE-ECCCCCCCC-----CEEEEEECCCEEEECCCCEECCCCCCCCCCCHHHHHHCCCCCCEEEEECCCCCCCCCCCCC
Q ss_conf 9998-556777765-----3567987681799833402467766542389889986087882999963564578887777
Q gi|254780869|r 136 IESV-RVNHSIPET-----MALVIRSPVGNIVHTGDWKLDDDAILGDVTDKDSLCAIGNEGILALMCDSTNAMREGTCIS 209 (559)
Q Consensus 136 v~~~-~~~Hsip~a-----~~~~I~t~~g~i~ytGDfk~d~~p~~g~~~d~~~l~~~~~~gv~~Li~esT~~~~~~~~~s 209 (559)
|+|- |+-|---|+ .+++|...+-+++|+.|. .|...| ..+.-+-++..++++.++--..--|+.-+
T Consensus 149 IefS~pvpHG~eGskLGyVl~v~V~dg~~~i~faSDv-------qGp~~~-~~l~~i~e~~P~v~ii~GPpty~lg~r~~ 220 (304)
T COG2248 149 IEFSPPVPHGREGSKLGYVLMVAVTDGKSSIVFASDV-------QGPIND-EALEFILEKRPDVLIIGGPPTYLLGYRVG 220 (304)
T ss_pred EEECCCCCCCCCCCCCCEEEEEEEECCCEEEEECCCC-------CCCCCC-HHHHHHHHCCCCEEEECCCCHHHHHHHCC
T ss_conf 9956888888766622149999994397689971366-------688860-88899985189889966982667665507
Q ss_pred HHHHHH---HHHHHHHHCCCCEEEEEC-HHHH---HHHHHHHHHHHHHCCEEEEE
Q ss_conf 879999---999998627983999941-4778---99999999998718869984
Q gi|254780869|r 210 EKGIKK---NIYDIMKNAKGCVLVTTF-SSSV---SRIRSIIDIAEQIGRKIVLL 257 (559)
Q Consensus 210 E~~v~~---~i~~~~~~~~grViv~~f-asni---~Ri~~i~~~a~~~~R~v~i~ 257 (559)
+.+++. +++++++++...+++.-- -.+. ..++.+.+.|++.|-.|.-.
T Consensus 221 ~~~~E~~irNl~~ii~~~~~~lViDHHllRD~~y~e~l~~l~~~~~~~GV~v~Ta 275 (304)
T COG2248 221 PKSLEKGIRNLERIIEETNATLVIDHHLLRDKNYREFLEELFERAEKAGVEVATA 275 (304)
T ss_pred HHHHHHHHHHHHHHHHHCCCEEEEEEHHHCCCCHHHHHHHHHHHHHHCCCEEEEH
T ss_conf 6779999989999997076649985202317778999999986676437222148
No 39
>COG5212 PDE1 Low-affinity cAMP phosphodiesterase [Signal transduction mechanisms]
Probab=98.48 E-value=5.1e-07 Score=69.54 Aligned_cols=102 Identities=23% Similarity=0.229 Sum_probs=77.3
Q ss_pred HCCCEEEEECCCCCCCCCH----HHHHHHCCCCEECCHHHHHHHHHHHHHCCCCCC--------CCEEEECCCCEEEEC-
Q ss_conf 1246899605430121607----888986299779299999999999985488655--------622551755557763-
Q gi|254780869|r 66 KNLMAIFITHAHEDHYGAL----HDLWSFLHVPVYASPFAIGLLEAKRVYERVSKK--------IPCISFQAGDKVDVG- 132 (559)
Q Consensus 66 ~~i~~i~iTH~H~DHiGal----p~l~~~~~~pIY~s~~t~~li~~~~~~~~~~~~--------~~~~~i~~~~~~~~g- 132 (559)
..|.--||||+|+|||.++ |...++-+-.||+.+.|...++.....+.++++ +++..++|.+..+.+
T Consensus 111 Q~I~~y~ITH~HLDHIsGlVinSp~~~~qkkkTI~gl~~tIDvL~khvFN~lvWP~lt~~gs~~~~~qvv~P~~~~slt~ 190 (356)
T COG5212 111 QSINSYFITHAHLDHISGLVINSPDDSKQKKKTIYGLADTIDVLRKHVFNWLVWPNLTDSGSGTYRMQVVRPAQSLSLTL 190 (356)
T ss_pred HHHHHEEECCCCCCCHHCEEECCCCCCCCCCCEEEECHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEEECHHHEEEEEE
T ss_conf 31222375230200000136348643455773377240279999987510001577441458548889847347105533
Q ss_pred -CEEEEEEECCCCC----C-CCCEEEEEEC--CCEEEECCCCE
Q ss_conf -4899998556777----7-6535679876--81799833402
Q gi|254780869|r 133 -AFSIESVRVNHSI----P-ETMALVIRSP--VGNIVHTGDWK 167 (559)
Q Consensus 133 -~~~v~~~~~~Hsi----p-~a~~~~I~t~--~g~i~ytGDfk 167 (559)
++++.||||.|.+ | -+.+|++... +..++|-||.-
T Consensus 191 t~l~~~pfpv~Hg~ktG~p~ySs~~lfr~nkS~~~f~~fGDve 233 (356)
T COG5212 191 TRLTGEPFPVSHGKKTGSPSYSSMLLFRSNKSNEFFAYFGDVE 233 (356)
T ss_pred EEECCEEEECCCCCCCCCCCCCEEEEEECCCCCCEEEEECCCC
T ss_conf 4402225641378666884421489985378762489946878
No 40
>PRK11709 putative L-ascorbate 6-phosphate lactonase; Provisional
Probab=98.47 E-value=1.2e-05 Score=59.69 Aligned_cols=121 Identities=24% Similarity=0.370 Sum_probs=82.5
Q ss_pred HCCCEEEEECCCCCCCCCH--HHHHHH--CCCCEECCHHHHHHHHHHHHHCCCCCCCCEEEECCCCEEEECCEEEEEEEC
Q ss_conf 1246899605430121607--888986--299779299999999999985488655622551755557763489999855
Q gi|254780869|r 66 KNLMAIFITHAHEDHYGAL--HDLWSF--LHVPVYASPFAIGLLEAKRVYERVSKKIPCISFQAGDKVDVGAFSIESVRV 141 (559)
Q Consensus 66 ~~i~~i~iTH~H~DHiGal--p~l~~~--~~~pIY~s~~t~~li~~~~~~~~~~~~~~~~~i~~~~~~~~g~~~v~~~~~ 141 (559)
++++|++.||-|.||+--- ...++- -++|..+++.+..+ ....+... -++.+++||+.+++++++|.....
T Consensus 108 k~lDavl~TH~H~DHiD~n~AAAv~~n~~~~v~FiGP~~~vd~----W~~WGVP~-eR~ivvkPGD~~kvkDi~i~ales 182 (355)
T PRK11709 108 NEIDAVLATHDHSDHIDVNVAAAVMQNCADHVKFIGPQTCVDL----WIGWGVPK-ERCIVVKPGDVVKVKDIEIHALDA 182 (355)
T ss_pred CCCCEEEEEECCCCCHHHHHHHHHHHCCCCCCCEECCHHHHHH----HHHCCCCH-HHEEEECCCCEEEEEEEEEEEECC
T ss_conf 5320799851143430089999998268557853185899988----88629967-887995489878871269998504
Q ss_pred -------C---------CCCCC-----CCEEEEEECCCEEEECCCCEECCCCCCCCCCCHHHHHHCCCC-CCEEEEECCC
Q ss_conf -------6---------77776-----535679876817998334024677665423898899860878-8299996356
Q gi|254780869|r 142 -------N---------HSIPE-----TMALVIRSPVGNIVHTGDWKLDDDAILGDVTDKDSLCAIGNE-GILALMCDST 199 (559)
Q Consensus 142 -------~---------Hsip~-----a~~~~I~t~~g~i~ytGDfk~d~~p~~g~~~d~~~l~~~~~~-gv~~Li~esT 199 (559)
| ...|+ |+.|+++||+|+|.|+||=-+ -..+++.|++ .+|+-+..
T Consensus 183 fDRT~lvT~~~~~~~~~g~~~~~Md~~AVnYl~kT~gGnvYH~gDSHy-----------Sn~fakhG~~~~IDVal~~-- 249 (355)
T PRK11709 183 FDRTALITLPADGKAAGGVLPDGMDRRAVNYLFKTPGGNLYHSGDSHY-----------SNYYAKHGNEYQIDVALGS-- 249 (355)
T ss_pred CCCEEEEECCCCCCCCCCCCCCHHHHHHHHEEEECCCCCEEECCCCHH-----------HHHHHHHCCCCCCEEEEEC--
T ss_conf 562479851787544689997216676341489769976775576135-----------5678872761031178732--
Q ss_pred CCCCC
Q ss_conf 45788
Q gi|254780869|r 200 NAMRE 204 (559)
Q Consensus 200 ~~~~~ 204 (559)
++++|
T Consensus 250 yGeNP 254 (355)
T PRK11709 250 YGENP 254 (355)
T ss_pred CCCCC
T ss_conf 56689
No 41
>pfam07521 RMMBL RNA-metabolising metallo-beta-lactamase. The metallo-beta-lactamase fold contains five sequence motifs. The first four motifs are found in pfam00753 and are common to all metallo-beta-lactamases. The fifth motif appears to be specific to function. This entry represents the fifth motif from metallo-beta-lactamases involved in RNA metabolism.
Probab=98.27 E-value=5.7e-07 Score=69.16 Aligned_cols=33 Identities=30% Similarity=0.716 Sum_probs=31.1
Q ss_pred CEECCCCCCHHHHHHHHHHCCCCEEEEECCCHH
Q ss_conf 413157889789999997549539997045779
Q gi|254780869|r 364 PVHVSGHPYPNDLKRMYQWIRPQVLVAIHGEPL 396 (559)
Q Consensus 364 ~iH~SGHa~~edl~~li~~ikPk~~IPvHGe~r 396 (559)
.+|+||||+++||+.|++.++|++++|||||++
T Consensus 11 ~~~fSgHAd~~eL~~~i~~~~p~~v~~vHGe~~ 43 (43)
T pfam07521 11 TLHFSGHADQEELLELLKLLKPKKVILVHGEPR 43 (43)
T ss_pred EEEEECCCCHHHHHHHHHHCCCCEEEEECCCCC
T ss_conf 998873689899999999669998999439989
No 42
>TIGR02649 true_RNase_BN ribonuclease BN; InterPro: IPR013469 Proteins in this entry include ribonuclease BN of Escherichia coli (strain K-12) and closely related proteins believed to be equivalent in function. E. coli appears to lack RNase Z, and this ribonuclease appears to be orthologous to (but not functionally equivalent to) RNase Z of Bacillus subtilis and various other species. ; GO: 0016891 endoribonuclease activity producing 5'-phosphomonoesters, 0042779 removal of tRNA 3'-trailer sequence.
Probab=98.14 E-value=1.1e-05 Score=59.83 Aligned_cols=132 Identities=21% Similarity=0.278 Sum_probs=95.7
Q ss_pred CCCCCCCEEEEEE--ECCCCCCEEEEEECCCCCCCCCCCCEEEECCCHHHHHHHHHCCCEEEEECCCCCCCCCHHHHHHH
Q ss_conf 8683466069999--51777864899977676788876750287079579876641246899605430121607888986
Q gi|254780869|r 13 GVGEIGMNMALYG--YGSPSSRKWIMIDCGVSFPKDDLPGVDLVFPDITFIMKERKNLMAIFITHAHEDHYGALHDLWSF 90 (559)
Q Consensus 13 G~~eiG~N~~~~~--~~~~~~~~~iiiD~G~~fp~~~~~gid~iiPd~~~l~~~~~~i~~i~iTH~H~DHiGalp~l~~~ 90 (559)
|.-...+|.+.+- .--..+.-.+++|||-+-.. .++ + -.-+..|++-|||+|-|-||.-+||-|+-.
T Consensus 10 GvPtr~rnvtaill~lqhPtq~G~WlfdCGeGtqh-q~l--~--------taf~PGkl~~ifishlhGdhlfGlPGllCs 78 (304)
T TIGR02649 10 GVPTRSRNVTAILLNLQHPTQSGLWLFDCGEGTQH-QLL--N--------TAFNPGKLEKIFISHLHGDHLFGLPGLLCS 78 (304)
T ss_pred CCCCCCHHHHHHEEECCCCCCCCEEEEECCCCHHH-HHH--H--------HHCCCCCCEEEEEEEECCCCCCCCCHHHHH
T ss_conf 88755101200001004877674068876875267-888--7--------414887500357542236500155313443
Q ss_pred C-------CCCEECCHHHHHHHHHHHHHCCCCCCC--CEEEECCCCEEEECCEEEEEEECCCCCCCCCEEEEEEC
Q ss_conf 2-------997792999999999999854886556--22551755557763489999855677776535679876
Q gi|254780869|r 91 L-------HVPVYASPFAIGLLEAKRVYERVSKKI--PCISFQAGDKVDVGAFSIESVRVNHSIPETMALVIRSP 156 (559)
Q Consensus 91 ~-------~~pIY~s~~t~~li~~~~~~~~~~~~~--~~~~i~~~~~~~~g~~~v~~~~~~Hsip~a~~~~I~t~ 156 (559)
. ...||++..-.+++...+...+-|.++ ++.++..++.++-|--+|+.|+..|.. +++||.|.--
T Consensus 79 rsm~G~~~Plt~yGPqG~ref~~t~lr~sGsWtd~Pl~i~ei~aG~ilddGlrkvta~~lehPl-eCyGyr~~eh 152 (304)
T TIGR02649 79 RSMAGIIQPLTVYGPQGVREFVETALRLSGSWTDYPLEIVEISAGEILDDGLRKVTAYRLEHPL-ECYGYRVVEH 152 (304)
T ss_pred HHHCCCCCCEEEECCCHHHHHHHHHHHHCCCCCCCCEEEEEECCCCHHHHCCHHEEEECCCCCC-EECCEEEEEC
T ss_conf 3313777640675662168898766421111013651578622541122000100120146861-0011067751
No 43
>TIGR02650 RNase_Z_T_toga ribonuclease Z, Thermotoga type; InterPro: IPR013470 All tRNA molecules are synthesised as long precursors with extra sequence at both the 5' and 3' ends, which undergo several processing steps to form the mature tRNA molecule. In many bacteria the tRNA precursors do not contain the CCA sequence which forms the 3' end of the mature tRNA and is essential for aminoacylation. In these organisms ribonucleotide Z cleaves the precursor to form a 3' end to which CCA is added. Proteins in this entry, by contrast are ribonuclease Z enzymes with unusual activity. Organisms containing these proteins include the CCA sequence in the tRNA precursor and ribonuclease Z cleaves the molecule immediately after this sequence producing a mature 3' end. The sequence of these proteins differs considerably from the majority of ribonuclease Z sequences..
Probab=97.45 E-value=0.0011 Score=45.42 Aligned_cols=107 Identities=19% Similarity=0.330 Sum_probs=65.4
Q ss_pred EEEEEECCCCCCCCCCCCEEEECCCHHHHHHHHHCCCEEEEECCCCCCCCCHHHHHHH---------CCCCEECCHHHHH
Q ss_conf 4899977676788876750287079579876641246899605430121607888986---------2997792999999
Q gi|254780869|r 33 KWIMIDCGVSFPKDDLPGVDLVFPDITFIMKERKNLMAIFITHAHEDHYGALHDLWSF---------LHVPVYASPFAIG 103 (559)
Q Consensus 33 ~~iiiD~G~~fp~~~~~gid~iiPd~~~l~~~~~~i~~i~iTH~H~DHiGalp~l~~~---------~~~pIY~s~~t~~ 103 (559)
+.||+|+|-+. +.++|-... -.+-+|+||||-|||.+|--...- -...||-+....+
T Consensus 19 erilfdaGeGv--sttlGskvy------------afkyvflthGhvdhiaGlWGvvnirnnGmGdrekPldvfyP~Gnra 84 (277)
T TIGR02650 19 ERILFDAGEGV--STTLGSKVY------------AFKYVFLTHGHVDHIAGLWGVVNIRNNGMGDREKPLDVFYPKGNRA 84 (277)
T ss_pred CEEEEECCCCC--CHHHCCEEE------------EEEEEEEECCCHHHHCCEEEEEEEECCCCCCCCCCCEEECCCCCHH
T ss_conf 31254357850--011111012------------2345543236212210002367752178886457522235886504
Q ss_pred HHHHH----HHHCCCCCCCCEEEECCCCEEEE---CCEE--EEEEECCCCCC-CCCEEEE
Q ss_conf 99999----98548865562255175555776---3489--99985567777-6535679
Q gi|254780869|r 104 LLEAK----RVYERVSKKIPCISFQAGDKVDV---GAFS--IESVRVNHSIP-ETMALVI 153 (559)
Q Consensus 104 li~~~----~~~~~~~~~~~~~~i~~~~~~~~---g~~~--v~~~~~~Hsip-~a~~~~I 153 (559)
+=+-. .....+....+.++++.++.+=+ |+|+ |.||++-|-.. =++|+.|
T Consensus 85 veeyt~fik~anP~lrfsfnvhPl~eG~rvflr~aGGfkryvqPfrtkhv~~evsfGyhi 144 (277)
T TIGR02650 85 VEEYTEFIKKANPELRFSFNVHPLKEGERVFLRDAGGFKRYVQPFRTKHVASEVSFGYHI 144 (277)
T ss_pred HHHHHHHHHHCCCCCEEEEECCCCCCCCEEEEECCCCCCCCCCCCCCEEEEEEEECCHHH
T ss_conf 888899986338663366531313468778984478720012530000010000013024
No 44
>KOG0814 consensus
Probab=97.10 E-value=0.0063 Score=40.09 Aligned_cols=113 Identities=22% Similarity=0.282 Sum_probs=73.2
Q ss_pred CCCEEEEEECCCCCCCCCCCCEEEECCCHHHHHHHHHCCCEEEEECCCCCCCCCHHHHHHHCCCCEECCHHHHHHHHHHH
Q ss_conf 78648999776767888767502870795798766412468996054301216078889862997792999999999999
Q gi|254780869|r 30 SSRKWIMIDCGVSFPKDDLPGVDLVFPDITFIMKERKNLMAIFITHAHEDHYGALHDLWSFLHVPVYASPFAIGLLEAKR 109 (559)
Q Consensus 30 ~~~~~iiiD~G~~fp~~~~~gid~iiPd~~~l~~~~~~i~~i~iTH~H~DHiGalp~l~~~~~~pIY~s~~t~~li~~~~ 109 (559)
.++..+||| |-.+ .+--|.+.+.+-.-++.--+=||.|.|||-+-.+|...+ |= ...+|.. .
T Consensus 30 ~~~~AviID-----PV~e-----t~~RD~qlikdLgl~LiYa~NTH~HADHiTGtg~Lkt~~--pg-----~kSVis~-~ 91 (237)
T KOG0814 30 KTGKAVIID-----PVLE-----TVSRDAQLIKDLGLDLIYALNTHVHADHITGTGLLKTLL--PG-----CKSVISS-A 91 (237)
T ss_pred CCCCEEEEC-----CHHH-----CCCCHHHHHHHCCCEEEEEECCEEECCCCCCCCHHHHHC--CC-----HHHHHHH-C
T ss_conf 888558964-----0563-----253057999861800144230403203301633377764--21-----8888654-0
Q ss_pred HHCCCCCCCCEEEECCCCEEEECCEEEEEEECCCCCCCCCEEEEEECCCEEEECCCCE
Q ss_conf 8548865562255175555776348999985567777653567987681799833402
Q gi|254780869|r 110 VYERVSKKIPCISFQAGDKVDVGAFSIESVRVNHSIPETMALVIRSPVGNIVHTGDWK 167 (559)
Q Consensus 110 ~~~~~~~~~~~~~i~~~~~~~~g~~~v~~~~~~Hsip~a~~~~I~t~~g~i~ytGDfk 167 (559)
.+ .+. -.-+++++.+++|.+.++.-.+....+||+.|.++ +++..||||--
T Consensus 92 --SG--akA-D~~l~~Gd~i~~G~~~le~ratPGHT~GC~TyV~~--d~~~aFTGDal 142 (237)
T KOG0814 92 --SG--AKA-DLHLEDGDIIEIGGLKLEVRATPGHTNGCVTYVEH--DLRMAFTGDAL 142 (237)
T ss_pred --CC--CCC-CCCCCCCCEEEECCEEEEEECCCCCCCCEEEEEEC--CCCEEEECCEE
T ss_conf --36--531-21348897787745799985189987763799965--75125624656
No 45
>TIGR03588 PseC UDP-4-keto-6-deoxy-N-acetylglucosamine 4-aminotransferase. This family of enzymes are aminotransferases of the pfam01041 family involved in the biosynthesis of pseudaminic acid. They convert UDP-4-keto-6-deoxy-N-acetylglucosamine into UDP-4-amino-4,6-dideoxy-N-acetylgalactose. Pseudaminic acid has a role in surface polysaccharide in Pseudomonas as well as in the modification of flagellin in Campylobacter and Helicobacter species.
Probab=96.96 E-value=0.039 Score=34.37 Aligned_cols=171 Identities=13% Similarity=0.156 Sum_probs=98.7
Q ss_pred HHHCCCCCCCCCC-CCHHHHCCC-CCCCEEEEEECCCCCHHHHHHHHCCCCCCCCCCCCCCEEEEEEECCCCHHHHHHHH
Q ss_conf 8742876776542-265662238-80208999966963268898852027776530268966999961588617789999
Q gi|254780869|r 268 AIDVGIIKKDQLF-LSDESFGLY-PREQLIVIATGSQGEPRSALAQLSRGEMRNVKLAEKDTVIFSSRAIPGNEVAIGHI 345 (559)
Q Consensus 268 a~~~g~l~~~~~~-i~~~~~~~~-p~~~~~ii~TGsqge~~a~l~ria~~~~~~i~l~~~D~vI~ss~~ipGnE~~~~~~ 345 (559)
+.+.|++..-+.. .-.+++..+ ....++.+.+|+..=.. +| . .+.+++||.||.++-.-+ .+
T Consensus 19 ~l~s~~~~~G~~v~~fE~~~~~~~g~k~~v~~~sgT~AL~l-al----~----al~~~~gdeVivp~~tf~-------at 82 (380)
T TIGR03588 19 VLKSDFLTQGPTVPAFEEALAEYVGAKYAVAFNSATSALHI-AC----L----ALGVGPGDEVWTTPITFV-------AT 82 (380)
T ss_pred HHHCCCCCCCHHHHHHHHHHHHHHCCCEEEEECCHHHHHHH-HH----H----HCCCCCCCEEEECCCCCH-------HH
T ss_conf 98479866897699999999999785949997588999999-99----9----849999899996785308-------86
Q ss_pred HHHHHCCCEEEEECCCCCCEECCCCCCHHHHHHHHHH---CCCCEEEEEC--CCHHHHHHHHHHHHHCCCCCEEEECC--
Q ss_conf 9765103113430356664131578897899999975---4953999704--57799999998787447863155003--
Q gi|254780869|r 346 KNRLVEQGVRVIAEDAECPVHVSGHPYPNDLKRMYQW---IRPQVLVAIH--GEPLHLVAHKELALQEGIACVPPVRN-- 418 (559)
Q Consensus 346 ~n~l~~~g~~vi~~~~~~~iH~SGHa~~edl~~li~~---ikPk~~IPvH--Ge~rhl~~h~~la~~~gv~~i~l~~N-- 418 (559)
.+.+...|++.+.-|.+. -++.-+.++++..+.. -|.|-+|||| |-.-.+.+-.++|++.|++ ++|+
T Consensus 83 ~~ai~~~Ga~pvf~Dvd~---~t~~id~~~l~~~it~~~~~ktkaIi~vh~~G~~~d~~~i~~ia~~~~i~---lIEDaA 156 (380)
T TIGR03588 83 ANCALYCGAKVDFVDIDP---DTGNIDEDALEKKLAAAKGKLPKAIVPVDFAGKSVDMQAIAALAKKHGLK---IIEDAS 156 (380)
T ss_pred HHHHHHCCCEEEEEECCH---HHCCCCHHHHHHHHHHCCCCCCEEEEEECCCCEECCHHHHHHHHHHCCCE---EEEECC
T ss_conf 799998799689984410---00148988877777643677725999948985434899999999986988---999880
Q ss_pred -----------------CEEEEECCCCEEEEEEEECCCEEECCCCEECCCCHHHHHHHHHHHCCEE
Q ss_conf -----------------2278973897045012321320212331002550588999974038749
Q gi|254780869|r 419 -----------------GKMLRLFPDPIEIIDEVVHGLFLKDGFLIGKFADLGIAKRRQLSFVGHL 467 (559)
Q Consensus 419 -----------------Gd~i~l~~~~~~i~~~v~~g~~~vDG~~i~~~~~~vl~eR~~Ls~~GiV 467 (559)
||+--|+=.. .+.+.+| +|+-+.--+....+.=+.|.+.|+.
T Consensus 157 ~a~Ga~~~gk~~Gs~~~gd~~~fSF~~---~K~ittG----eGG~i~tnd~~l~~~~r~lr~~G~~ 215 (380)
T TIGR03588 157 HALGAEYGGKPVGNCRYADATVFSFHP---VKIITTA----EGGAVTTNDEELAERMRLLRSHGIT 215 (380)
T ss_pred CHHCCCCCCCCCCCCCCCCEEEEECCC---CCCCCCC----CCEEEEECCHHHHHHHHHHHHCCCC
T ss_conf 011577578765664435246773355---5557778----8539996999999999999976967
No 46
>COG2015 Alkyl sulfatase and related hydrolases [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=96.44 E-value=0.017 Score=36.97 Aligned_cols=70 Identities=24% Similarity=0.451 Sum_probs=43.6
Q ss_pred CEEEEEEECCCCCCEEEEEECCCCCCCCCCCCEEEECCCHHH-HHHH-HHCCCEEEEECCCCCCCCCHHHHHHHC-----
Q ss_conf 606999951777864899977676788876750287079579-8766-412468996054301216078889862-----
Q gi|254780869|r 19 MNMALYGYGSPSSRKWIMIDCGVSFPKDDLPGVDLVFPDITF-IMKE-RKNLMAIFITHAHEDHYGALHDLWSFL----- 91 (559)
Q Consensus 19 ~N~~~~~~~~~~~~~~iiiD~G~~fp~~~~~gid~iiPd~~~-l~~~-~~~i~~i~iTH~H~DHiGalp~l~~~~----- 91 (559)
.|++.++ .+..||+||-=+. |+.-. .-.+. -+++ +..|.+|+.||.|.||+|++.-+..+-
T Consensus 126 sNITfve----Gdtg~IViDpL~t-~~tA~-------aAldl~~~~~g~rPV~aVIYtHsH~DHfGGVkGiv~eadV~sG 193 (655)
T COG2015 126 SNITFVE----GDTGWIVIDPLVT-PETAK-------AALDLYNQHRGQRPVVAVIYTHSHSDHFGGVKGIVSEADVKSG 193 (655)
T ss_pred CCEEEEC----CCCCEEEECCCCC-CHHHH-------HHHHHHHHHCCCCCEEEEEEECCCCCCCCCEEECCCHHHCCCC
T ss_conf 3227980----7852699815678-28899-------9999999765889748999612542013771001578884667
Q ss_pred CCCEECCHH
Q ss_conf 997792999
Q gi|254780869|r 92 HVPVYASPF 100 (559)
Q Consensus 92 ~~pIY~s~~ 100 (559)
++||.++..
T Consensus 194 kV~iiAP~G 202 (655)
T COG2015 194 KVQIIAPAG 202 (655)
T ss_pred CEEEECCHH
T ss_conf 413764605
No 47
>PRK11658 UDP-4-amino-4-deoxy-L-arabinose--oxoglutarate aminotransferase; Provisional
Probab=96.18 E-value=0.12 Score=30.89 Aligned_cols=102 Identities=20% Similarity=0.281 Sum_probs=64.8
Q ss_pred CCCCEEEEEECCCCCHHHHHHHHCCCCCCCCCCCCCCEEEEEEECCCCHHHHHHHHHHHHHCCCEEEEECCCCCCEECCC
Q ss_conf 80208999966963268898852027776530268966999961588617789999976510311343035666413157
Q gi|254780869|r 290 PREQLIVIATGSQGEPRSALAQLSRGEMRNVKLAEKDTVIFSSRAIPGNEVAIGHIKNRLVEQGVRVIAEDAECPVHVSG 369 (559)
Q Consensus 290 p~~~~~ii~TGsqge~~a~l~ria~~~~~~i~l~~~D~vI~ss~~ipGnE~~~~~~~n~l~~~g~~vi~~~~~~~iH~SG 369 (559)
....++.+.+|+.+ ...+|. .+.+++||.||..+-. ...+.+.+...|++.+.-|.+. -+.
T Consensus 47 g~k~av~v~sgT~A-L~lal~--------al~i~~gdeVi~p~~t-------f~at~~ai~~~Ga~pvf~Did~---~t~ 107 (379)
T PRK11658 47 GNQHAIAVSSATAG-MHITLM--------ALGIGPGDEVITPSQT-------WVSTLNMIVLLGATPVMVDVDR---DTL 107 (379)
T ss_pred CCCEEEEECCHHHH-HHHHHH--------HCCCCCCCEEEECCCC-------HHHHHHHHHHCCCEEEEECCCC---CCC
T ss_conf 86949997688999-999999--------8698883999989955-------6999999998199899745745---653
Q ss_pred CCCHHHHHHHHHHCCCCEEEEEC--CCHHHHHHHHHHHHHCCCC
Q ss_conf 88978999999754953999704--5779999999878744786
Q gi|254780869|r 370 HPYPNDLKRMYQWIRPQVLVAIH--GEPLHLVAHKELALQEGIA 411 (559)
Q Consensus 370 Ha~~edl~~li~~ikPk~~IPvH--Ge~rhl~~h~~la~~~gv~ 411 (559)
.-+.++++..+.- +.|-+|||| |-.-.+.+-.++|++-|++
T Consensus 108 ~id~~~~e~~it~-~tkaIi~Vh~~G~~~d~~~i~~i~~~~~i~ 150 (379)
T PRK11658 108 MVTPEAIEAAITP-RTKAIIPVHYAGAPADLDAIRAIGERYGIP 150 (379)
T ss_pred CCCHHHHHHHCCC-CCEEEEEECCCCCCCCHHHHHHHHHHCCCE
T ss_conf 5488999865482-654999856889866377999999975981
No 48
>KOG4736 consensus
Probab=96.03 E-value=0.039 Score=34.43 Aligned_cols=107 Identities=16% Similarity=0.316 Sum_probs=62.0
Q ss_pred CCEEEEEECCCC-CCCCCCCCEEEECCCHHHHHHHHHCCCEEEEECCCCCCCCCHHHHHHHCCCCEECCHHHHHHHHHHH
Q ss_conf 864899977676-7888767502870795798766412468996054301216078889862997792999999999999
Q gi|254780869|r 31 SRKWIMIDCGVS-FPKDDLPGVDLVFPDITFIMKERKNLMAIFITHAHEDHYGALHDLWSFLHVPVYASPFAIGLLEAKR 109 (559)
Q Consensus 31 ~~~~iiiD~G~~-fp~~~~~gid~iiPd~~~l~~~~~~i~~i~iTH~H~DHiGalp~l~~~~~~pIY~s~~t~~li~~~~ 109 (559)
..+.+++|.|+. .+....+ .++|+++++||+|.+|+|.+...-. -|+ |... +
T Consensus 103 ~~~v~v~~~gls~lak~~vt---------------~d~i~~vv~t~~~~~hlgn~~~f~~---sp~--------l~~s-~ 155 (302)
T KOG4736 103 GGDVVVVDTGLSVLAKEGVT---------------LDQIDSVVITHKSPGHLGNNNLFPQ---SPI--------LYHS-M 155 (302)
T ss_pred CCCEEEEECCCCHHHHCCCC---------------HHHCCEEEEECCCCCCCCCCCCCCC---CHH--------HHHH-H
T ss_conf 88349995587224214767---------------5345516873247554265334667---777--------7664-5
Q ss_pred HHCCCCCCCCEEEECCCCEEEECCEEEEEEECCCCCCCCCEEEEEE--CCCEEEECCCCE
Q ss_conf 8548865562255175555776348999985567777653567987--681799833402
Q gi|254780869|r 110 VYERVSKKIPCISFQAGDKVDVGAFSIESVRVNHSIPETMALVIRS--PVGNIVHTGDWK 167 (559)
Q Consensus 110 ~~~~~~~~~~~~~i~~~~~~~~g~~~v~~~~~~Hsip~a~~~~I~t--~~g~i~ytGDfk 167 (559)
...+ ....-..++.+..+++++ .++++.+..+-+.+....++. ..|++++|||.-
T Consensus 156 e~~g--r~~~pt~l~e~~~~~l~~-~~~V~~TpGht~~~isvlv~n~~~~GTv~itGDLf 212 (302)
T KOG4736 156 EYIG--RHVTPTELDERPYLKLSP-NVEVWKTPGHTQHDISVLVHNVDLYGTVAITGDLF 212 (302)
T ss_pred HHCC--CCCCHHHHCCCCCCCCCC-CEEEEECCCCCCCCEEEEEEEECCCCEEEEEEECC
T ss_conf 6037--856742403377400177-54675079998763579998504552489985324
No 49
>TIGR02108 PQQ_syn_pqqB coenzyme PQQ biosynthesis protein B; InterPro: IPR011842 This entry describes coenzyme PQQ biosynthesis protein B, a gene required for the biosynthesis of pyrrolo-quinoline-quinone (coenzyme PQQ). PQQ is required for some glucose dehydrogenases and alcohol dehydrogenases. Note that this gene appears to be required for PQQ in biosynthesis in Methylobacterium extorquens (under the name pqqG) and in Klebsiella pneumoniae but that the equivalent pqqV in Acinetobacter calcoaceticus is not necessary for heterologous expression of PQQ biosynthesis in Escherichia coli. Based on this latter finding, it is suggested that PqqB might be a transporter or a PQQ-dependent enzyme rather than a PQQ biosynthesis enzyme .; GO: 0006810 transport, 0018189 pyrroloquinoline quinone biosynthetic process.
Probab=95.81 E-value=0.068 Score=32.67 Aligned_cols=142 Identities=15% Similarity=0.185 Sum_probs=78.3
Q ss_pred CCCEEEEECCCCCCCCCHHHHHHH-CCCCEECCHHHHHHHHH-HHHHCCCCC-C--CCEEEECCCCEEEE-------CCE
Q ss_conf 246899605430121607888986-29977929999999999-998548865-5--62255175555776-------348
Q gi|254780869|r 67 NLMAIFITHAHEDHYGALHDLWSF-LHVPVYASPFAIGLLEA-KRVYERVSK-K--IPCISFQAGDKVDV-------GAF 134 (559)
Q Consensus 67 ~i~~i~iTH~H~DHiGalp~l~~~-~~~pIY~s~~t~~li~~-~~~~~~~~~-~--~~~~~i~~~~~~~~-------g~~ 134 (559)
.|.||+||-+-.||+-||=-|..- -++-||||+-+.+.|.. ---..-+.+ . .+.++|..++++++ ..+
T Consensus 80 pI~~V~Lt~g~iDH~tGLL~LREgq~pf~~yat~~Vlq~L~~GNp~F~~L~~~~Ggv~r~Pial~~~~~~~~~DG~~~gL 159 (314)
T TIGR02108 80 PIEGVVLTDGEIDHVTGLLSLREGQQPFTLYATEMVLQDLSDGNPIFNVLNHWNGGVRRQPIALDEKFEFKIKDGAAPGL 159 (314)
T ss_pred CEEEEEECCCCHHHHHHHHHHCCCCCCCEEEECCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 60478820662245641233303788514862715788875488602122522376544231158886743147789886
Q ss_pred EEEEEECCCCCCCCCEEEEEECCCEEEECCCCEECCCCCCCCCCCHHHHHHCCCCCCEEEEECCCCCCCCCCCCCHHHHH
Q ss_conf 99998556777765356798768179983340246776654238988998608788299996356457888777787999
Q gi|254780869|r 135 SIESVRVNHSIPETMALVIRSPVGNIVHTGDWKLDDDAILGDVTDKDSLCAIGNEGILALMCDSTNAMREGTCISEKGIK 214 (559)
Q Consensus 135 ~v~~~~~~Hsip~a~~~~I~t~~g~i~ytGDfk~d~~p~~g~~~d~~~l~~~~~~gv~~Li~esT~~~~~~~~~sE~~v~ 214 (559)
++|+|.|--++ -...+.... +|. .|.+- ..+.+=++|-|.++..+-.+.|-=.+|.
T Consensus 160 ~~t~f~vpgka----PlY~e~rs~-----~dl-------~g~~~--------~gdT~Gl~I~D~~~~k~~~YiPGca~vt 215 (314)
T TIGR02108 160 EFTAFAVPGKA----PLYSEHRSG-----EDL-------AGDPH--------PGDTLGLLIEDGKTGKRLFYIPGCAEVT 215 (314)
T ss_pred EEEEEECCCCC----CCCCCCCCC-----CCC-------CCCCC--------CCCEEEEEEEECCCCCEEEEECCCCCCC
T ss_conf 27356627777----757810035-----213-------68757--------8870489997536765478703566638
Q ss_pred HHHHHHHHHCCCCEEE-EEC
Q ss_conf 9999998627983999-941
Q gi|254780869|r 215 KNIYDIMKNAKGCVLV-TTF 233 (559)
Q Consensus 215 ~~i~~~~~~~~grViv-~~f 233 (559)
+.|.+.++.++= |+| .|+
T Consensus 216 ~~L~a~~~~Ad~-v~fDGTl 234 (314)
T TIGR02108 216 DDLKARMAGADL-VFFDGTL 234 (314)
T ss_pred HHHHHHHHCCCE-EEECCCC
T ss_conf 688989861773-7754740
No 50
>PRK11706 TDP-4-oxo-6-deoxy-D-glucose transaminase; Provisional
Probab=95.58 E-value=0.16 Score=30.02 Aligned_cols=127 Identities=14% Similarity=0.190 Sum_probs=73.2
Q ss_pred HHHHHHHCCCCCCCCCCC--CHHHHCC-CCCCCEEEEEECCCCCHHHHHHHHCCCCCCCCCCCCCCEEEEEEECCCCHHH
Q ss_conf 999887428767765422--6566223-8802089999669632688988520277765302689669999615886177
Q gi|254780869|r 264 VVSVAIDVGIIKKDQLFL--SDESFGL-YPREQLIVIATGSQGEPRSALAQLSRGEMRNVKLAEKDTVIFSSRAIPGNEV 340 (559)
Q Consensus 264 ~~~~a~~~g~l~~~~~~i--~~~~~~~-~p~~~~~ii~TGsqge~~a~l~ria~~~~~~i~l~~~D~vI~ss~~ipGnE~ 340 (559)
.+.-+.+.|.+.....++ -.+++.+ .....++.+.+|+.+ |.-... .+.+++||.||..+-.
T Consensus 16 ~v~~~l~sg~~~~~G~~v~~fE~~~a~~~g~~~av~v~sgT~A-----L~lal~----~l~i~~gdeVivp~~t------ 80 (375)
T PRK11706 16 YIQEAMSSGKLSGDGGFTRRCQQWLEQRFGCAKVLLTPSCTAA-----LEMAAL----LLDIQPGDEVIMPSYT------ 80 (375)
T ss_pred HHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCEEEEECCHHHH-----HHHHHH----HCCCCCCCEEEECCCC------
T ss_conf 9999997098768997999999999999784939996788999-----999999----8698893999989966------
Q ss_pred HHHHHHHHHHCCCEEEEECCCCCCEECCCCCCHHHHHHHHHHCCCCEEEEEC--CCHHHHHHHHHHHHHCCC
Q ss_conf 8999997651031134303566641315788978999999754953999704--577999999987874478
Q gi|254780869|r 341 AIGHIKNRLVEQGVRVIAEDAECPVHVSGHPYPNDLKRMYQWIRPQVLVAIH--GEPLHLVAHKELALQEGI 410 (559)
Q Consensus 341 ~~~~~~n~l~~~g~~vi~~~~~~~iH~SGHa~~edl~~li~~ikPk~~IPvH--Ge~rhl~~h~~la~~~gv 410 (559)
.....+.+...|++.+.-|.+. -+..-+.++++..+.- |+|-+|||| |..-.+.+-.++|++-|+
T Consensus 81 -f~at~~ai~~~Ga~pvfvDid~---~t~~id~~~ie~~it~-ktkaIi~Vh~~G~~~d~~~I~~iak~~~i 147 (375)
T PRK11706 81 -FVSTANAFVLRGAKIVFVDIRP---DTMNIDETLIEAAITP-KTRAIVPVHYAGVACEMDTIMALAKKHNL 147 (375)
T ss_pred -HHHHHHHHHHCCCEEEEEEECC---CCCCCCHHHHHHHHCC-CCEEEEEECCCCCCCCHHHHHHHHHHCCC
T ss_conf -4999999998399699997168---7577678999987086-75499996788986678999998853790
No 51
>COG0399 WecE Predicted pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis [Cell envelope biogenesis, outer membrane]
Probab=94.79 E-value=0.35 Score=27.54 Aligned_cols=212 Identities=15% Similarity=0.152 Sum_probs=108.2
Q ss_pred HHHHHHHHHCCCCCCCCCCC--CHHHHCCC-CCCCEEEEEECCCCCHHHHHHHHCCCCCCCCCCCCCCEEEEEEECCCCH
Q ss_conf 99999887428767765422--65662238-8020899996696326889885202777653026896699996158861
Q gi|254780869|r 262 KRVVSVAIDVGIIKKDQLFL--SDESFGLY-PREQLIVIATGSQGEPRSALAQLSRGEMRNVKLAEKDTVIFSSRAIPGN 338 (559)
Q Consensus 262 ~~~~~~a~~~g~l~~~~~~i--~~~~~~~~-p~~~~~ii~TGsqge~~a~l~ria~~~~~~i~l~~~D~vI~ss~~ipGn 338 (559)
...+.-+.+.|.+.. ..++ ..+.+..+ .....+-+++|+- +|.-... .+.+.+||.||.+|-.
T Consensus 18 ~~~v~~vl~sg~i~~-G~~v~~FE~~~ae~~G~k~ava~~sgT~-----AL~laL~----al~ig~GDeVI~ps~T---- 83 (374)
T COG0399 18 LAAVQEVLKSGWLTG-GPFVRRFEQAFAEYLGVKYAVAVSSGTA-----ALHLALL----ALAIGPGDEVIVPSFT---- 83 (374)
T ss_pred HHHHHHHHHCCCCCC-CHHHHHHHHHHHHHHCCCEEEEECCHHH-----HHHHHHH----HCCCCCCCEEEECCCC----
T ss_conf 999999996197416-8678999999999849973999668489-----9999999----6487999979936875----
Q ss_pred HHHHHHHHHHHHCCCEEEEECCCCCCEECCCCCCHHHHHHHHHHCCCCEEEEEC--CCHHHHHHHHHHHHHCCCCCEEEE
Q ss_conf 778999997651031134303566641315788978999999754953999704--577999999987874478631550
Q gi|254780869|r 339 EVAIGHIKNRLVEQGVRVIAEDAECPVHVSGHPYPNDLKRMYQWIRPQVLVAIH--GEPLHLVAHKELALQEGIACVPPV 416 (559)
Q Consensus 339 E~~~~~~~n~l~~~g~~vi~~~~~~~iH~SGHa~~edl~~li~~ikPk~~IPvH--Ge~rhl~~h~~la~~~gv~~i~l~ 416 (559)
..-..|.+...|++.+.-|.+.+ |.--+.+.++.-+.-- +|-+|||| |-.-.+.+-.++|.+-|+. ++
T Consensus 84 ---fvATan~i~~~Ga~PVFvDid~~---T~nid~~~ie~aIt~~-tKAIipVhl~G~~~dm~~i~~la~~~~l~---vI 153 (374)
T COG0399 84 ---FVATANAVLLVGAKPVFVDIDPD---TLNIDPDLIEAAITPR-TKAIIPVHLAGQPCDMDAIMALAKRHGLP---VI 153 (374)
T ss_pred ---HHHHHHHHHHCCCEEEEEECCCC---CCCCCHHHHHHHCCCC-CEEEEEEHHCCCCCCHHHHHHHHHHCCCE---EE
T ss_conf ---39889999976996799964764---1477999999871557-74999851216877989999999873984---99
Q ss_pred CCCEE---EEECCCC-----------EEEEEEEECCCEEECCCCEECCCCHHHHHHHHHHHCCEEEEEEEECCCCCEEEC
Q ss_conf 03227---8973897-----------045012321320212331002550588999974038749999998389988005
Q gi|254780869|r 417 RNGKM---LRLFPDP-----------IEIIDEVVHGLFLKDGFLIGKFADLGIAKRRQLSFVGHLSVNVLLDNHYNIFGV 482 (559)
Q Consensus 417 ~NGd~---i~l~~~~-----------~~i~~~v~~g~~~vDG~~i~~~~~~vl~eR~~Ls~~GiV~V~viid~~~~l~~~ 482 (559)
++--. -...++. ..-.+.+.+| +|.-+.-.++.....=+.+...|...=. .-.
T Consensus 154 EDaAqa~Ga~y~gk~vGt~Gd~~~fSF~~~K~ittg----EGGav~tnd~ela~k~~~lr~hG~~~~~---------~~~ 220 (374)
T COG0399 154 EDAAQAHGATYKGKKVGSFGDIGAFSFHATKNLTTG----EGGAVVTNDEELAEKARSLRNHGLSRDA---------VFK 220 (374)
T ss_pred EECCHHCCCEECCCCCCCCCCEEEEEECCCCCCCCC----CCEEEEECCHHHHHHHHHHHHHCCCCCC---------CCC
T ss_conf 876032067235842556664689986587765566----7507983889999999999983767786---------656
Q ss_pred CEEEEECCEECCCCHHHHHHHHHHHHHHHHH
Q ss_conf 3799940121256658899999999999998
Q gi|254780869|r 483 PEIVDIGIPAYDGDGGKIHKLLLKTVITTVV 513 (559)
Q Consensus 483 P~I~~~Gl~~~~~~~~~l~~~i~~~i~~~i~ 513 (559)
-+....|+ +....++...+.-.-...+.
T Consensus 221 y~~~~~G~---N~rm~~iqAAigl~QL~~l~ 248 (374)
T COG0399 221 YLHEELGY---NYRLTEIQAAIGLAQLERLD 248 (374)
T ss_pred CEEEECCC---CCCHHHHHHHHHHHHHHHHH
T ss_conf 43521330---03877999999999998889
No 52
>PRK13508 tagatose-6-phosphate kinase; Provisional
Probab=93.45 E-value=0.63 Score=25.71 Aligned_cols=66 Identities=18% Similarity=0.201 Sum_probs=31.3
Q ss_pred CCCCCEEEEEEECCCCHH-HHHHHHHHHHHCCCEEEEECCCCCCEECCCCCCHHHHHHHHHH-CCCCEEEEECCCHHHH
Q ss_conf 268966999961588617-7899999765103113430356664131578897899999975-4953999704577999
Q gi|254780869|r 322 LAEKDTVIFSSRAIPGNE-VAIGHIKNRLVEQGVRVIAEDAECPVHVSGHPYPNDLKRMYQW-IRPQVLVAIHGEPLHL 398 (559)
Q Consensus 322 l~~~D~vI~ss~~ipGnE-~~~~~~~n~l~~~g~~vi~~~~~~~iH~SGHa~~edl~~li~~-ikPk~~IPvHGe~rhl 398 (559)
+++.|.|++|-+.-||-. ..+.+++..+.+.|++++-+ +| .+-|+..++. .+|-.+-|=.-|...|
T Consensus 124 ~~~~d~vvisGSlP~g~~~~~y~~li~~~~~~g~~vilD-------~s----g~~L~~~l~~~~~P~lIKPN~~El~~l 191 (309)
T PRK13508 124 LEKVEVVAISGSLPAGLPQDYYAQLIELANNKGKKVVLD-------CS----GAALQAVLKSPYKPTVIKPNIEELSQL 191 (309)
T ss_pred HCCCCEEEEECCCCCCCCHHHHHHHHHHHHHCCCEEEEE-------CC----HHHHHHHHHCCCCCCEECCCHHHHHHH
T ss_conf 055999999688899998599999999998559989998-------97----699999984657772774598999998
No 53
>TIGR00361 ComEC_Rec2 DNA internalization-related competence protein ComEC/Rec2; InterPro: IPR004797 This is the DNA internalisation-related competence protein ComEC/Rec2 family. Apparent orthologs are found in 5 species so far (Haemophilus influenzae, Escherichia coli, Bacillus subtilis, Neisseria gonorrhoeae, Streptococcus pneumoniae), of which all but E. coli are model systems for the study of competence for natural transformation. This protein is a predicted multiple membrane-spanning protein likely to be involved in DNA internalisation.; GO: 0030420 establishment of competence for transformation, 0016021 integral to membrane.
Probab=93.15 E-value=0.51 Score=26.38 Aligned_cols=128 Identities=20% Similarity=0.264 Sum_probs=68.7
Q ss_pred CEEEEEECC--CCC-----CCCCC---CCEEEECCCHHHHHHHHHC-CCEEEEECCCCCCCCCHHHHHHHCCCC-EECC-
Q ss_conf 648999776--767-----88876---7502870795798766412-468996054301216078889862997-7929-
Q gi|254780869|r 32 RKWIMIDCG--VSF-----PKDDL---PGVDLVFPDITFIMKERKN-LMAIFITHAHEDHYGALHDLWSFLHVP-VYAS- 98 (559)
Q Consensus 32 ~~~iiiD~G--~~f-----p~~~~---~gid~iiPd~~~l~~~~~~-i~~i~iTH~H~DHiGalp~l~~~~~~p-IY~s- 98 (559)
...++.|.| +.+ ++... .|-..++| |+....-+ +++++++|.|.||.|+...+++.+... +..+
T Consensus 502 ~~~~l~d~gg~~~~~~~~w~~~~~p~~~~~~~~~p---~l~~~~~~~~~~~~l~~~~~d~~g~~~~~l~~~~~~~~~~p~ 578 (731)
T TIGR00361 502 KGRILYDTGGTLSYSSLPWREGQHPFSLGELLLLP---WLTWEGLKQLEGLILSHDDLDHAGGADTLLKHWPVLWLVTPK 578 (731)
T ss_pred CCEEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHH---HHHHCCCHHHHHHHHCCCCCCCCCHHHHHHHHHHHHEEECCC
T ss_conf 53168634762112543466666752100245543---454302101234420023211124056777642001032154
Q ss_pred -----HHHHHHHHHHHHHCCCCCCCCEEEECCCCEEEECCEEEEEEECCCCCC-----CCCEEEEEECCCEEEECCCCE
Q ss_conf -----999999999998548865562255175555776348999985567777-----653567987681799833402
Q gi|254780869|r 99 -----PFAIGLLEAKRVYERVSKKIPCISFQAGDKVDVGAFSIESVRVNHSIP-----ETMALVIRSPVGNIVHTGDWK 167 (559)
Q Consensus 99 -----~~t~~li~~~~~~~~~~~~~~~~~i~~~~~~~~g~~~v~~~~~~Hsip-----~a~~~~I~t~~g~i~ytGDfk 167 (559)
|....++.... ...........++.....+..+....-....+ .++-+.+++....++-|||..
T Consensus 579 ~~~~~p~d~~~~~~~~-----~~~~~~~~~~~g~~~~~~~l~~~~~~p~~~~~~~~~~~~~~~~~~~g~~~~~l~gd~~ 652 (731)
T TIGR00361 579 GFNSEPKDEKVLQAAR-----LGGEYHEPCKRGDDWQWQGLRFHVLSPLAPDPDSGNNHSCVLWVDDGGNSWLLTGDLE 652 (731)
T ss_pred CCCCCCCHHHHHHHHH-----HCCCHHHHHHCCCCEEECCCEEEEECCCCCCCCCCCCCEEEEEEECCCCEEEEECCCC
T ss_conf 4456640356776654-----0440111221354101114113541554566666776316899716871378722534
No 54
>COG0329 DapA Dihydrodipicolinate synthase/N-acetylneuraminate lyase [Amino acid transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=91.33 E-value=1.1 Score=24.07 Aligned_cols=179 Identities=17% Similarity=0.217 Sum_probs=97.8
Q ss_pred CCHHHHHH----CCCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHCCCC--EEEEECHHHHHHHHHHHHHHHHHC
Q ss_conf 89889986----087882999963564578887777879999999998627983--999941477899999999998718
Q gi|254780869|r 178 TDKDSLCA----IGNEGILALMCDSTNAMREGTCISEKGIKKNIYDIMKNAKGC--VLVTTFSSSVSRIRSIIDIAEQIG 251 (559)
Q Consensus 178 ~d~~~l~~----~~~~gv~~Li~esT~~~~~~~~~sE~~v~~~i~~~~~~~~gr--Viv~~fasni~Ri~~i~~~a~~~~ 251 (559)
.|++.+.+ +-+.||+.++.-+|.++.+--| ..+-.+-++.+.+-++|| ||+.+-+.|..-..++.+.|++.|
T Consensus 22 vD~~a~~~lv~~li~~Gv~gi~~~GttGE~~~Ls--~eEr~~v~~~~v~~~~grvpviaG~g~~~t~eai~lak~a~~~G 99 (299)
T COG0329 22 VDEEALRRLVEFLIAAGVDGLVVLGTTGESPTLT--LEERKEVLEAVVEAVGGRVPVIAGVGSNSTAEAIELAKHAEKLG 99 (299)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEECCCCCCCHHCC--HHHHHHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHHHHCC
T ss_conf 3999999999999984998899798665722169--99999999999999689777898628777999999999999709
Q ss_pred CEEEEE-C--------HHHHHHHH-HHHHCCC----CCCCC---CCCCHHHHCCCCC-CCEEEE--EECCCCCHHHHHHH
Q ss_conf 869984-4--------86999999-8874287----67765---4226566223880-208999--96696326889885
Q gi|254780869|r 252 RKIVLL-G--------SSLKRVVS-VAIDVGI----IKKDQ---LFLSDESFGLYPR-EQLIVI--ATGSQGEPRSALAQ 311 (559)
Q Consensus 252 R~v~i~-G--------rs~~~~~~-~a~~~g~----l~~~~---~~i~~~~~~~~p~-~~~~ii--~TGsqge~~a~l~r 311 (559)
=.=++. . +.+...+. ++...+. .|.+. .-+..+.+..+-+ .+++-+ +||+ ...+.+
T Consensus 100 ad~il~v~PyY~k~~~~gl~~hf~~ia~a~~lPvilYN~P~~tg~~l~~e~i~~la~~~nivgiKd~~gd----~~~~~~ 175 (299)
T COG0329 100 ADGILVVPPYYNKPSQEGLYAHFKAIAEAVDLPVILYNIPSRTGVDLSPETIARLAEHPNIVGVKDSSGD----LDRLEE 175 (299)
T ss_pred CCEEEEECCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCHHHHHHHHCCCCEEEEEECCCC----HHHHHH
T ss_conf 9999984897889897999999999998518998999787524899999999998278988999847889----999999
Q ss_pred HCCCCCCCCCCCCC-CEEEEEEECCCCHHHHHHHHHHHHHCCCEEEEECCCCCCEECCCCCCHHHHHHHHHHCCC
Q ss_conf 20277765302689-669999615886177899999765103113430356664131578897899999975495
Q gi|254780869|r 312 LSRGEMRNVKLAEK-DTVIFSSRAIPGNEVAIGHIKNRLVEQGVRVIAEDAECPVHVSGHPYPNDLKRMYQWIRP 385 (559)
Q Consensus 312 ia~~~~~~i~l~~~-D~vI~ss~~ipGnE~~~~~~~n~l~~~g~~vi~~~~~~~iH~SGHa~~edl~~li~~ikP 385 (559)
+. ...+. |..+|| |.+..... .+. .|++ ..+.+.+|...+...+|+++.+-
T Consensus 176 ~~-------~~~~~~~f~v~~-----G~d~~~~~---~~~-~G~~-------G~is~~~N~~p~~~~~l~~~~~~ 227 (299)
T COG0329 176 II-------AALGDRDFIVLS-----GDDELALP---ALL-LGAD-------GVISVTANVAPELAVELYRAAKA 227 (299)
T ss_pred HH-------HHCCCCCEEEEE-----CCHHHHHH---HHH-CCCC-------EEEECCCHHCHHHHHHHHHHHHC
T ss_conf 99-------864876628982-----66588889---986-7798-------58841001279999999999987
No 55
>PRK00685 metal-dependent hydrolase; Provisional
Probab=91.13 E-value=0.29 Score=28.16 Aligned_cols=57 Identities=19% Similarity=0.350 Sum_probs=38.9
Q ss_pred CCCCCHHHHHHHHHHCCCCEEEEEC-CCHHHHHHH-HHHHHH-CCCC-CEEEECCCEEEEE
Q ss_conf 5788978999999754953999704-577999999-987874-4786-3155003227897
Q gi|254780869|r 368 SGHPYPNDLKRMYQWIRPQVLVAIH-GEPLHLVAH-KELALQ-EGIA-CVPPVRNGKMLRL 424 (559)
Q Consensus 368 SGHa~~edl~~li~~ikPk~~IPvH-Ge~rhl~~h-~~la~~-~gv~-~i~l~~NGd~i~l 424 (559)
.-|-+.+|-..+.+.++||++||+| |.+.+..+. .+++.+ .+.. .+.+++.|+.++|
T Consensus 168 ~~~m~p~eA~~~~~~l~~k~~IP~H~gtf~~~~~~p~~~~~~~~~~~~~v~i~~~Ge~~~l 228 (228)
T PRK00685 168 RFTMGPADAALAAEWLKPKTVVPMHYNTFPVIEQDPEKFVAGLEGVKTTVVILEPGESIEL 228 (228)
T ss_pred CCCCCHHHHHHHHHHHCCCEEEECCCCCCCCCCCCHHHHHHHHHCCCCEEEECCCCCEEEC
T ss_conf 6105999999999973999999818888886537999999987524987997699998869
No 56
>cd00616 AHBA_syn 3-amino-5-hydroxybenzoic acid synthase family (AHBA_syn). AHBA_syn family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The members of this CD are involved in various biosynthetic pathways for secondary metabolites. Some well studied proteins in this CD are AHBA_synthase, protein product of pleiotropic regulatory gene degT, Arnb aminotransferase and pilin glycosylation protein. The prototype of this family, the AHBA_synthase, is a dimeric PLP dependent enzyme. AHBA_syn is the terminal enzyme of 3-amino-5-hydroxybenzoic acid (AHBA) formation which is involved in the biosynthesis of ansamycin antibiotics, including rifamycin B. Some members of this CD are involved in 4-amino-6-deoxy-monosaccharide D-perosamine synthesis. Perosamine is an important element in the glycosylation of several cell products, such as antibiotics and lipopolysaccharides of gram-positive and gram-negative bacteria. The pilin glycosylation protein
Probab=90.90 E-value=1.2 Score=23.60 Aligned_cols=168 Identities=17% Similarity=0.248 Sum_probs=89.3
Q ss_pred HHCCCCCCCCCC-CCHHHHCCC-CCCCEEEEEECCCCCHHHHHHHHCCCCCCCCCCCCCCEEEEEEECCCCHHHHHHHHH
Q ss_conf 742876776542-265662238-802089999669632688988520277765302689669999615886177899999
Q gi|254780869|r 269 IDVGIIKKDQLF-LSDESFGLY-PREQLIVIATGSQGEPRSALAQLSRGEMRNVKLAEKDTVIFSSRAIPGNEVAIGHIK 346 (559)
Q Consensus 269 ~~~g~l~~~~~~-i~~~~~~~~-p~~~~~ii~TGsqge~~a~l~ria~~~~~~i~l~~~D~vI~ss~~ipGnE~~~~~~~ 346 (559)
.+.|++..-+.. .-.+.+.++ ..+.++.+.+|+. ||.-+. +.+.+++||.||.++-.-+ .+.
T Consensus 9 l~s~~~~~G~~v~~fE~~~~~~~g~k~~v~~~sgt~-----Al~lal----~~l~~~~gdeVi~p~~t~~-------at~ 72 (352)
T cd00616 9 LDSGWLTLGPKVREFEKAFAEYLGVKYAVAVSSGTA-----ALHLAL----RALGIGPGDEVIVPSFTFV-------ATA 72 (352)
T ss_pred HHCCCCCCCHHHHHHHHHHHHHHCCCEEEEECCHHH-----HHHHHH----HHCCCCCCCEEEECCCCCH-------HHH
T ss_conf 836997798769999999999978593999768899-----999999----9869788399998997639-------899
Q ss_pred HHHHCCCEEEEECCCCCCEECCCCCCHHHHHHHHHHCCCCEEEEEC--CCHHHHHHHHHHHHHCCCCCEEEECC------
Q ss_conf 7651031134303566641315788978999999754953999704--57799999998787447863155003------
Q gi|254780869|r 347 NRLVEQGVRVIAEDAECPVHVSGHPYPNDLKRMYQWIRPQVLVAIH--GEPLHLVAHKELALQEGIACVPPVRN------ 418 (559)
Q Consensus 347 n~l~~~g~~vi~~~~~~~iH~SGHa~~edl~~li~~ikPk~~IPvH--Ge~rhl~~h~~la~~~gv~~i~l~~N------ 418 (559)
+.+...|++++.-|.+.. +...+.++++..+. =++|-+|||| |-.-.+.+-.++|++.|+. ++++
T Consensus 73 ~ai~~~G~~pv~~Di~~~---t~~id~~~l~~~i~-~~tkaIi~vh~~G~~~d~~~i~~~~~~~~i~---lIeDaA~a~G 145 (352)
T cd00616 73 NAILLLGATPVFVDIDPD---TYNIDPELIEAAIT-PRTKAIIPVHLYGNPADMDAIMAIAKRHGLP---VIEDAAQALG 145 (352)
T ss_pred HHHHHCCCEEEEEECCCC---CCCCCHHHHHHHCC-CCCCEEEEECCCCCCCCHHHHHHHHHHCCCE---EEEHHHHHCC
T ss_conf 999985998998407778---57758899997628-6870999968989866889999999977989---9802200216
Q ss_pred -----------CEEEEECCCCEEEEEEEECCCEEECCCCEECCCCHHHHHHHHHHHCCE
Q ss_conf -----------227897389704501232132021233100255058899997403874
Q gi|254780869|r 419 -----------GKMLRLFPDPIEIIDEVVHGLFLKDGFLIGKFADLGIAKRRQLSFVGH 466 (559)
Q Consensus 419 -----------Gd~i~l~~~~~~i~~~v~~g~~~vDG~~i~~~~~~vl~eR~~Ls~~Gi 466 (559)
||+.-|+ ....+.+.+| +|+-+.--+......-+.|.+.|.
T Consensus 146 s~~~~~~~G~~gd~~~fS---F~~~K~it~g----eGG~i~tn~~~~~~~~~~lr~~G~ 197 (352)
T cd00616 146 ATYKGRKVGTFGDAGAFS---FHPTKNLTTG----EGGAVVTNDEELAERARLLRNHGR 197 (352)
T ss_pred CCCCCEECCCCCCCCCCC---CCCCCCCCCC----CCEEEEECCHHHHHHHHHHHHCCC
T ss_conf 834671256643425344---7877567677----734999699999999999996596
No 57
>pfam01041 DegT_DnrJ_EryC1 DegT/DnrJ/EryC1/StrS aminotransferase family. The members of this family are probably all pyridoxal-phosphate-dependent aminotransferase enzymes with a variety of molecular functions. The family includes StsA, StsC, and StsS. The aminotransferase activity was demonstrated for purified StsC protein as the L-glutamine:scyllo-inosose aminotransferase EC:2.6.1.50, which catalyses the first amino transfer in the biosynthesis of the streptidine subunit of streptomycin.
Probab=89.22 E-value=1.7 Score=22.67 Aligned_cols=150 Identities=19% Similarity=0.264 Sum_probs=87.1
Q ss_pred CCCCEEEEEECCCCCHHHHHHHHCCCCCCCCCCCCCCEEEEEEECCCCHHHHHHHHHHHHHCCCEEEEECCCCCCEECCC
Q ss_conf 80208999966963268898852027776530268966999961588617789999976510311343035666413157
Q gi|254780869|r 290 PREQLIVIATGSQGEPRSALAQLSRGEMRNVKLAEKDTVIFSSRAIPGNEVAIGHIKNRLVEQGVRVIAEDAECPVHVSG 369 (559)
Q Consensus 290 p~~~~~ii~TGsqge~~a~l~ria~~~~~~i~l~~~D~vI~ss~~ipGnE~~~~~~~n~l~~~g~~vi~~~~~~~iH~SG 369 (559)
..+.++.+.+|+.+=. .+| . .+.+++||.||.++-.-+. +.+.+...|++++.-|.+. -+.
T Consensus 39 g~k~~v~~~sgT~Al~-lal----~----a~~~~~gdeVi~p~~t~~a-------t~~ai~~~G~~pvf~Dvd~---~t~ 99 (363)
T pfam01041 39 GVKHAVAVSSGTAALH-LAL----R----ALGIGPGDEVIVPSFTFVA-------TANAVLYLGAKPVFVDIDP---DTY 99 (363)
T ss_pred CCCEEEEECCHHHHHH-HHH----H----HCCCCCCCEEEECCCCCHH-------HHHHHHHCCCEEEEEECCC---CCC
T ss_conf 8495999758899999-999----9----8598892999979977598-------8999998699799850645---656
Q ss_pred CCCHHHHHHHHHHCCCCEEEEEC--CCHHHHHHHHHHHHHCCCCCEEEECC----------CEEEEECCC-C---EEEEE
Q ss_conf 88978999999754953999704--57799999998787447863155003----------227897389-7---04501
Q gi|254780869|r 370 HPYPNDLKRMYQWIRPQVLVAIH--GEPLHLVAHKELALQEGIACVPPVRN----------GKMLRLFPD-P---IEIID 433 (559)
Q Consensus 370 Ha~~edl~~li~~ikPk~~IPvH--Ge~rhl~~h~~la~~~gv~~i~l~~N----------Gd~i~l~~~-~---~~i~~ 433 (559)
..+.+++++.+.- +.|-+|||| |-.-.+.+-.++|++.|+. ++++ |..+--.++ . ....+
T Consensus 100 ~id~~~l~~~i~~-~tkaIi~vh~~G~~~d~~~i~~~~~~~~i~---lIEDaA~a~Ga~~~gk~~G~~gd~~~fSF~~~K 175 (363)
T pfam01041 100 NIDPAAIEAAITP-RTKAIMPVHLYGQPADMDAIRAIAAEHGLP---VIEDAAHAHGATYKGKRVGTFGDAATFSFFPTK 175 (363)
T ss_pred CCCHHHHHHHCCC-CCCEEEEECCCCCCCCHHHHHHHHHHCCCE---EEEECCCCCCCCCCCEECCCCCCCCEEECCCCC
T ss_conf 8589999986075-870999878989868999999999984999---997313202676586543564452102057876
Q ss_pred EEECCCEEECCCCEECCCCHHHHHHHHHHHCCE
Q ss_conf 232132021233100255058899997403874
Q gi|254780869|r 434 EVVHGLFLKDGFLIGKFADLGIAKRRQLSFVGH 466 (559)
Q Consensus 434 ~v~~g~~~vDG~~i~~~~~~vl~eR~~Ls~~Gi 466 (559)
.+.+| +|+-+.--+....+.=+.|.+.|.
T Consensus 176 ~ittG----eGG~i~tnd~~l~~~~r~lr~~G~ 204 (363)
T pfam01041 176 NITTG----EGGAVVTDDPELAERARCLRNHGC 204 (363)
T ss_pred CCCCC----CCEEEEECCHHHHHHHHHHHHCCC
T ss_conf 54468----970999699999999999996596
No 58
>PRK13371 4-hydroxy-3-methylbut-2-enyl diphosphate reductase; Provisional
Probab=88.54 E-value=1.8 Score=22.36 Aligned_cols=268 Identities=16% Similarity=0.231 Sum_probs=123.6
Q ss_pred CCCEEEECCEEEEEEECCCCCCCCCEEEEE--------------ECCCEEEECCCCEECCCCCCCCCCCHHHHHHCCCCC
Q ss_conf 555577634899998556777765356798--------------768179983340246776654238988998608788
Q gi|254780869|r 125 AGDKVDVGAFSIESVRVNHSIPETMALVIR--------------SPVGNIVHTGDWKLDDDAILGDVTDKDSLCAIGNEG 190 (559)
Q Consensus 125 ~~~~~~~g~~~v~~~~~~Hsip~a~~~~I~--------------t~~g~i~ytGDfk~d~~p~~g~~~d~~~l~~~~~~g 190 (559)
.+-.++.|+.+|. ...++|||.= .|+++|.-+|+.. ++|. =.++|. ++|
T Consensus 36 ~~~~~~~g~~~i~-------LA~~~GFC~GVeRAI~ia~ea~~~~p~~~Iy~~geII--HNp~-----Vv~~L~---~~G 98 (392)
T PRK13371 36 NGYVLQRGDVTIK-------LAEAFGFCWGVERAVAMAYETRRHFPDERIWITNEII--HNPS-----VNQHLR---EMG 98 (392)
T ss_pred CCCEEEECCEEEE-------EHHHCCCCCCHHHHHHHHHHHHHHCCCCCEEEECCCC--CCHH-----HHHHHH---HCC
T ss_conf 4976755777999-------6654687535899999999999868999789717874--6979-----999999---779
Q ss_pred CEEEEECCCCCCC------CCCC--CCHHHHHHHHHHHHHHCCCCEEEEECHHHHHHHHHHHHHHHHHCCEEEEECHHHH
Q ss_conf 2999963564578------8877--7787999999999862798399994147789999999999871886998448699
Q gi|254780869|r 191 ILALMCDSTNAMR------EGTC--ISEKGIKKNIYDIMKNAKGCVLVTTFSSSVSRIRSIIDIAEQIGRKIVLLGSSLK 262 (559)
Q Consensus 191 v~~Li~esT~~~~------~~~~--~sE~~v~~~i~~~~~~~~grViv~~fasni~Ri~~i~~~a~~~~R~v~i~Grs~~ 262 (559)
|..+ +...... +|.. .+-+-+.....+..++ +|..++-+--.-+.+++..++-..+-|.++++.|..-.
T Consensus 99 v~~i--~~~~~~kd~~~v~~gdvVIi~AHGvs~~v~~~l~~-kgl~ivDATCP~V~KV~~~v~k~~k~gy~iII~G~~~H 175 (392)
T PRK13371 99 VKFI--PVEQGVKDFSVVTPGDVVILPAFGATVQEMQLLHE-KGCHIVDTTCPWVSKVWNTVEKHKKHGFTSIIHGKYKH 175 (392)
T ss_pred CEEE--ECCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHH-CCCEEEECCCCCCHHHHHHHHHHHHCCCEEEEECCCCC
T ss_conf 9996--24566663200899998999699999789999998-89979968983619999999999968985999778898
Q ss_pred HHHHHHHHCCCCCCCCCCCCHHHHCCCCCCCEEEEEECCCCCHHHHHHH-HCCCCCCCCCCCCCCEEEEEEECCC-CHHH
Q ss_conf 9999887428767765422656622388020899996696326889885-2027776530268966999961588-6177
Q gi|254780869|r 263 RVVSVAIDVGIIKKDQLFLSDESFGLYPREQLIVIATGSQGEPRSALAQ-LSRGEMRNVKLAEKDTVIFSSRAIP-GNEV 340 (559)
Q Consensus 263 ~~~~~a~~~g~l~~~~~~i~~~~~~~~p~~~~~ii~TGsqge~~a~l~r-ia~~~~~~i~l~~~D~vI~ss~~ip-GnE~ 340 (559)
-++---.|+....-...+.+++..+.+ .|+-.|...+.+..+.. ++.+-++..+|++ .-|-+..+.. +.-.
T Consensus 176 --pEv~gt~s~a~~~~vV~~~eEa~~v~d---~i~~~~~~~~fl~kf~~a~s~gfdPd~dl~k--vgvv~QTTm~~~ete 248 (392)
T PRK13371 176 --EETLATSSFAGTYLVVLDLEEAQYVAD---YILGGGDREEFLKRFAKACSPGFDPDRDLER--VGVANQTTMLKSETE 248 (392)
T ss_pred --CCEEEEECCCCCEEEEECHHHHHHHHH---HHCCCCCHHHHHHHHHHHCCCCCCCCCCCCE--EEEEECCCCCHHHHH
T ss_conf --715884246885589705899888988---7507886899998753302567796556432--899945457689999
Q ss_pred HHHHHHHH-H-HCCCEEEEECCCCCCEECCCCCCHHHHHHHHHHCCC--CEEEEECCCH----HHHHHHHHHHHHCCCCC
Q ss_conf 89999976-5-103113430356664131578897899999975495--3999704577----99999998787447863
Q gi|254780869|r 341 AIGHIKNR-L-VEQGVRVIAEDAECPVHVSGHPYPNDLKRMYQWIRP--QVLVAIHGEP----LHLVAHKELALQEGIAC 412 (559)
Q Consensus 341 ~~~~~~n~-l-~~~g~~vi~~~~~~~iH~SGHa~~edl~~li~~ikP--k~~IPvHGe~----rhl~~h~~la~~~gv~~ 412 (559)
.+.+++.. + .+.|..-+... ...+-+==.|.++-+..+.++++. ..+|-|-|-. .|| .++|++.|++.
T Consensus 249 ~I~~~l~~~~~~~~g~~~~~~h-f~~fnTIC~ATq~RQ~A~~~L~~~~vDlmiVVGG~NSSNT~rL---~EIa~~~g~pt 324 (392)
T PRK13371 249 EIGKLFERTMLRKYGPAELNEH-FLSFNTICDATQERQDAMFSLVEEPLDLMVVIGGFNSSNTTHL---QEIAIERGIPS 324 (392)
T ss_pred HHHHHHHHHHHHHCCCHHHCCC-CCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHH---HHHHHHHCCCE
T ss_conf 9999999998762384121123-4523885130189999999987547888999468888418999---99999859985
Q ss_pred EEEECCCEEEEE
Q ss_conf 155003227897
Q gi|254780869|r 413 VPPVRNGKMLRL 424 (559)
Q Consensus 413 i~l~~NGd~i~l 424 (559)
+.+++.+-+.-
T Consensus 325 -y~Ie~a~ei~~ 335 (392)
T PRK13371 325 -YHIDTAERIGS 335 (392)
T ss_pred -EEECCHHHCCC
T ss_conf -99388788595
No 59
>COG1167 ARO8 Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs [Transcription / Amino acid transport and metabolism]
Probab=87.80 E-value=1.8 Score=22.46 Aligned_cols=103 Identities=13% Similarity=0.150 Sum_probs=58.2
Q ss_pred HHHHHHHHHHHHH------HCCCCEEEEECHHHHHHHHHHHHHHHHHCCEEEEECHHHHHHHHHHHHCCC--C--CCCCC
Q ss_conf 8799999999986------279839999414778999999999987188699844869999998874287--6--77654
Q gi|254780869|r 210 EKGIKKNIYDIMK------NAKGCVLVTTFSSSVSRIRSIIDIAEQIGRKIVLLGSSLKRVVSVAIDVGI--I--KKDQL 279 (559)
Q Consensus 210 E~~v~~~i~~~~~------~~~grViv~~fasni~Ri~~i~~~a~~~~R~v~i~Grs~~~~~~~a~~~g~--l--~~~~~ 279 (559)
...+.+.+.+.+. -....|++++-+++ -+.-+.++-..-|-+|++..=++.....++...|. + +.+..
T Consensus 134 ~~~LR~~ia~~l~~~~g~~~~~~~IiiT~G~q~--al~l~~~~l~~pGd~v~vE~PtY~~~~~~~~~~g~~~~~vp~d~~ 211 (459)
T COG1167 134 LPELREAIAAYLLARRGISCEPEQIVITSGAQQ--ALDLLLRLLLDPGDTVLVEDPTYPGALQALEALGARVIPVPVDED 211 (459)
T ss_pred CHHHHHHHHHHHHHHCCCCCCHHHEEECCCHHH--HHHHHHHHHCCCCCEEEECCCCHHHHHHHHHHCCCCEEEECCCCC
T ss_conf 899999999999997499888303898064999--999999984799999998999828999999986994786067888
Q ss_pred CCCHHHHCCCC---CCCEEEEEECCC--------CCHHHHHHHHCC
Q ss_conf 22656622388---020899996696--------326889885202
Q gi|254780869|r 280 FLSDESFGLYP---REQLIVIATGSQ--------GEPRSALAQLSR 314 (559)
Q Consensus 280 ~i~~~~~~~~p---~~~~~ii~TGsq--------ge~~a~l~ria~ 314 (559)
=++++.+...- +=+++++....| -+.+.+|..+|.
T Consensus 212 G~~~e~le~~~~~~~~k~~y~~P~~qNPtG~tms~~rR~~Ll~lA~ 257 (459)
T COG1167 212 GIDPEALEEALAQWKPKAVYVTPTFQNPTGVTMSLERRKALLALAE 257 (459)
T ss_pred CCCHHHHHHHHHCCCCCEEEECCCCCCCCCCCCCHHHHHHHHHHHH
T ss_conf 9897999999850697289978896388987459999999999999
No 60
>PRK00758 GMP synthase subunit A; Validated
Probab=85.59 E-value=1.3 Score=23.35 Aligned_cols=76 Identities=18% Similarity=0.271 Sum_probs=49.6
Q ss_pred EEEEEECCCCCCC-----CCCCCEEE-ECCCHHHHHHHHHCCCEEEEECCC-CCCCCCHHHHHHHCCCCEECCHHHHHHH
Q ss_conf 4899977676788-----87675028-707957987664124689960543-0121607888986299779299999999
Q gi|254780869|r 33 KWIMIDCGVSFPK-----DDLPGVDL-VFPDITFIMKERKNLMAIFITHAH-EDHYGALHDLWSFLHVPVYASPFAIGLL 105 (559)
Q Consensus 33 ~~iiiD~G~~fp~-----~~~~gid~-iiPd~~~l~~~~~~i~~i~iTH~H-~DHiGalp~l~~~~~~pIY~s~~t~~li 105 (559)
++++||+|-+|-- -...|++. ++|.-..+++-..+.+||+||-+- .+..+..+-++.+.++||.+==+...+|
T Consensus 1 kIlviD~~dsft~ni~~~l~~~g~~v~v~~~~~~~~~i~~~~dgiilS~GP~~~~~~~~~~~i~~~~iPiLGIClG~Q~l 80 (184)
T PRK00758 1 KILVINNGGQYNHLIHRTLRYLGVDAKIIPNTTPLEEIKAEPDGIILSGGPEIERAGNCEEYLLELDVPILGICLGHQLI 80 (184)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHCCCEEEECCCCCCCCCCCHHHHHHHCCCCEEEEEHHHHHH
T ss_conf 99999898638999999999789928999598989999638998998899983332206999986599889971776665
Q ss_pred HHH
Q ss_conf 999
Q gi|254780869|r 106 EAK 108 (559)
Q Consensus 106 ~~~ 108 (559)
-..
T Consensus 81 ~~~ 83 (184)
T PRK00758 81 AKA 83 (184)
T ss_pred HHH
T ss_conf 876
No 61
>pfam07522 DRMBL DNA repair metallo-beta-lactamase. The metallo-beta-lactamase fold contains five sequence motifs. The first four motifs are found in pfam00753 and are common to all metallo-beta-lactamases. The fifth motif appears to be specific to function. This entry represents the fifth motif from metallo-beta-lactamases involved in DNA repair.
Probab=85.27 E-value=0.82 Score=24.90 Aligned_cols=29 Identities=21% Similarity=0.392 Sum_probs=25.6
Q ss_pred EECCCCCCHHHHHHHHHHCCCCEEEEECC
Q ss_conf 13157889789999997549539997045
Q gi|254780869|r 365 VHVSGHPYPNDLKRMYQWIRPQVLVAIHG 393 (559)
Q Consensus 365 iH~SGHa~~edl~~li~~ikPk~~IPvHG 393 (559)
+--|.|.+-.||+.++..++|+-+||.=+
T Consensus 76 vpys~Hss~~el~~f~~~~~~~~iiptVn 104 (107)
T pfam07522 76 VPYSEHSSFSELEDFVSFLRPKKVIPTVN 104 (107)
T ss_pred ECCCCCCCHHHHHHHHHHCCCCEEECCCC
T ss_conf 36566779999999998679766987777
No 62
>TIGR01368 CPSaseIIsmall carbamoyl-phosphate synthase, small subunit; InterPro: IPR006274 Carbamoyl phosphate synthase (CPSase) is a heterodimeric enzyme composed of a small and a large subunit (with the exception of CPSase III, see below). CPSase catalyses the synthesis of carbamoyl phosphate from biocarbonate, ATP and glutamine (6.3.5.5 from EC) or ammonia (6.3.4.16 from EC), and represents the first committed step in pyrimidine and arginine biosynthesis in prokaryotes and eukaryotes, and in the urea cycle in most terrestrial vertebrates , . CPSase has three active sites, one in the small subunit and two in the large subunit. The small subunit contains the glutamine binding site and catalyses the hydrolysis of glutamine to glutamate and ammonia. The large subunit has two homologous carboxy phosphate domains, both of which have ATP-binding sites; however, the N-terminal carboxy phosphate domain catalyses the phosphorylation of biocarbonate, while the C-terminal domain catalyses the phosphorylation of the carbamate intermediate . The carboxy phosphate domain found duplicated in the large subunit of CPSase is also present as a single copy in the biotin-dependent enzymes acetyl-CoA carboxylase (6.4.1.2 from EC) (ACC), propionyl-CoA carboxylase (6.4.1.3 from EC) (PCCase), pyruvate carboxylase (6.4.1.1 from EC) (PC) and urea carboxylase (6.3.4.6 from EC). Most prokaryotes carry one form of CPSase that participates in both arginine and pyrimidine biosynthesis, however certain bacteria can have separate forms. The large subunit in bacterial CPSase has four structural domains: the carboxy phosphate domain 1, the oligomerisation domain, the carbamoyl phosphate domain 2 and the allosteric domain . CPSase heterodimers from Escherichia coli contain two molecular tunnels: an ammonia tunnel and a carbamate tunnel. These inter-domain tunnels connect the three distinct active sites, and function as conduits for the transport of unstable reaction intermediates (ammonia and carbamate) between successive active sites . The catalytic mechanism of CPSase involves the diffusion of carbamate through the interior of the enzyme from the site of synthesis within the N-terminal domain of the large subunit to the site of phosphorylation within the C-terminal domain. Eukaryotes have two distinct forms of CPSase: a mitochondrial enzyme (CPSase I) that participates in both arginine biosynthesis and the urea cycle; and a cytosolic enzyme (CPSase II) involved in pyrimidine biosynthesis. CPSase II occurs as part of a multi-enzyme complex along with aspartate transcarbamoylase and dihydroorotase; this complex is referred to as the CAD protein . The hepatic expression of CPSase is transcriptionally regulated by glucocorticoids and/or cAMP . There is a third form of the enzyme, CPSase III, found in fish, which uses glutamine as a nitrogen source instead of ammonia . CPSase III is closely related to CPSase I, and is composed of a single polypeptide that may have arisen from gene fusion of the glutaminase and synthetase domains . This entry represents the small subunit of the glutamine-dependent form (6.3.5.5 from EC) of carbamoyl phosphate synthase, CPSase II. The small subunit catalyses the hydrolysis of glutamine to ammonia, which in turn used by the large chain to synthesize carbamoyl phosphate. The C-terminal domain of the small subunit of CPSase has glutamine amidotransferase activity. Note that the sequence from the mammalian urea cycle form has lost the active site Cys, resulting in an ammonia-dependent form, CPSase I (6.3.4.16 from EC). CPSases of pyrimidine biosynthesis, arginine biosynthesis, and the urea cycle may be encoded by one or by several genes, depending on the species. ; GO: 0004086 carbamoyl-phosphate synthase activity, 0006807 nitrogen compound metabolic process.
Probab=85.13 E-value=1.5 Score=23.02 Aligned_cols=24 Identities=17% Similarity=0.112 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHHHCCEEEEEC
Q ss_conf 4778999999999987188699844
Q gi|254780869|r 234 SSSVSRIRSIIDIAEQIGRKIVLLG 258 (559)
Q Consensus 234 asni~Ri~~i~~~a~~~~R~v~i~G 258 (559)
.||--.-+++-+-.++.|- +.++|
T Consensus 95 ~Snwra~~SL~~~L~~~~i-pgI~G 118 (383)
T TIGR01368 95 YSNWRATESLDQFLKEHGI-PGIYG 118 (383)
T ss_pred CCHHHHHCCHHHHHHHCCC-EEEEC
T ss_conf 8715565048999985698-47304
No 63
>COG1105 FruK Fructose-1-phosphate kinase and related fructose-6-phosphate kinase (PfkB) [Carbohydrate transport and metabolism]
Probab=85.03 E-value=2.8 Score=21.06 Aligned_cols=66 Identities=21% Similarity=0.218 Sum_probs=41.4
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHC-CCC-EEEEEC-H--HHHHHHHHHHHHHHHHCCEEEEE--CHHHHH
Q ss_conf 564578887777879999999998627-983-999941-4--77899999999998718869984--486999
Q gi|254780869|r 198 STNAMREGTCISEKGIKKNIYDIMKNA-KGC-VLVTTF-S--SSVSRIRSIIDIAEQIGRKIVLL--GSSLKR 263 (559)
Q Consensus 198 sT~~~~~~~~~sE~~v~~~i~~~~~~~-~gr-Viv~~f-a--sni~Ri~~i~~~a~~~~R~v~i~--Grs~~~ 263 (559)
.|-..-+|+..||.+++..++.+-+.. +.- |+++=+ . =..+-..++++.|++.|.+|++. |..+..
T Consensus 101 ~Tein~~Gp~is~~~~~~~l~~~~~~l~~~d~VvlsGSlP~g~~~d~y~~li~~~~~~g~~vilD~Sg~~L~~ 173 (310)
T COG1105 101 ETEINFPGPEISEAELEQFLEQLKALLESDDIVVLSGSLPPGVPPDAYAELIRILRQQGAKVILDTSGEALLA 173 (310)
T ss_pred EEEECCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCHHHHHHHHHHHHHCCCEEEEECCHHHHHH
T ss_conf 6870488998899999999999997566488999908899999979999999999865983999798599999
No 64
>PRK07324 transaminase; Validated
Probab=84.85 E-value=1.6 Score=22.77 Aligned_cols=16 Identities=19% Similarity=0.407 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHHCC
Q ss_conf 8999999999987188
Q gi|254780869|r 237 VSRIRSIIDIAEQIGR 252 (559)
Q Consensus 237 i~Ri~~i~~~a~~~~R 252 (559)
-++++.++++|++++-
T Consensus 172 ~e~l~~l~~la~~~~i 187 (373)
T PRK07324 172 RAFLEEIVEIAKSVDA 187 (373)
T ss_pred HHHHHHHHHHHHCCCE
T ss_conf 9999999987541785
No 65
>PRK08636 aspartate aminotransferase; Provisional
Probab=84.82 E-value=2.9 Score=20.99 Aligned_cols=49 Identities=14% Similarity=0.165 Sum_probs=33.0
Q ss_pred CCCCCHHHHHHHHHHHHHHC--CCCEEEEECHHH-------HHHHHHHHHHHHHHCCE
Q ss_conf 87777879999999998627--983999941477-------89999999999871886
Q gi|254780869|r 205 GTCISEKGIKKNIYDIMKNA--KGCVLVTTFSSS-------VSRIRSIIDIAEQIGRK 253 (559)
Q Consensus 205 ~~~~sE~~v~~~i~~~~~~~--~grViv~~fasn-------i~Ri~~i~~~a~~~~R~ 253 (559)
++...+....+.+++.+++. +-+.++-|+.+| -+.+++|+++|++++--
T Consensus 153 ~~~~d~~~~~~~le~~~~~~~~ktk~iiln~P~NPTG~v~s~~~l~~i~~la~~~~i~ 210 (403)
T PRK08636 153 DFELDEDKFFENLEKALRESSPKPKYVVVNFPHNPTTATVEKSFYERLVALAKKERFY 210 (403)
T ss_pred CCCCCHHHHHHCHHHHHHHCCCCCEEEEECCCCCCCCCCCCHHHHHHHHHHHHHCCEE
T ss_conf 7424666520258998762688717999899989988788999999999999865938
No 66
>TIGR00674 dapA dihydrodipicolinate synthase; InterPro: IPR005263 Dihydropicolinate synthase (DHDPS) is the key enzyme in lysine biosynthesis via the diaminopimelate pathway of prokaryotes, some phycomycetes and higher plants. The enzyme catalyses the condensation of L-aspartate-beta-semialdehyde and pyruvate to dihydropicolinic acid via a ping-pong mechanism in which pyruvate binds to the enzyme by forming a Schiff-base with a lysine residue . Three other proteins are structurally related to DHDPS and probably also act via a similar catalytic mechanism. These are Escherichia coli N-acetylneuraminate lyase (4.1.3.3 from EC, IPR005264 from INTERPRO) (gene nanA), which catalyzes the condensation of N-acetyl-D-mannosamine and pyruvate to form N-acetylneuraminate; Sinorhizobium meliloti protein mosA , which is involved in the biosynthesis of the rhizopine 3-O-methyl-scyllo-inosamine; and E. coli hypothetical protein yjhH. The sequences of DHDPS from different sources are well-conserved. The structure takes the form of a homotetramer, in which 2 monomers are related by an approximate 2-fold symmetry . Each monomer comprises 2 domains: an 8-fold alpha-/beta-barrel, and a C-terminal alpha-helical domain. The fold resembles that of N-acetylneuraminate lyase. The active site lysine is located in the barrel domain, and has access via 2 channels on the C-terminal side of the barrel. This family represents a subclass of dihydrodipicolinate synthase. ; GO: 0008840 dihydrodipicolinate synthase activity, 0019877 diaminopimelate biosynthetic process.
Probab=83.05 E-value=3.4 Score=20.49 Aligned_cols=195 Identities=20% Similarity=0.236 Sum_probs=117.2
Q ss_pred CCHHHHHHC----CCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHCCCC--EEEEECHHHHHHHHHHHHHHHHHC
Q ss_conf 898899860----87882999963564578887777879999999998627983--999941477899999999998718
Q gi|254780869|r 178 TDKDSLCAI----GNEGILALMCDSTNAMREGTCISEKGIKKNIYDIMKNAKGC--VLVTTFSSSVSRIRSIIDIAEQIG 251 (559)
Q Consensus 178 ~d~~~l~~~----~~~gv~~Li~esT~~~~~~~~~sE~~v~~~i~~~~~~~~gr--Viv~~fasni~Ri~~i~~~a~~~~ 251 (559)
-|+..|.++ -+.|+++++.=||-++. .|.|-.|=.+-++-+++-++|| ||+.|-|.+..=..++.+.|++.|
T Consensus 16 VDf~~Le~li~~~~~~G~da~V~~GTTGEs--~TLs~EE~~~~i~~~~~~~~~R~pvIaG~GsN~T~Eai~l~~~a~~~G 93 (288)
T TIGR00674 16 VDFAALEKLIDFQIENGTDAIVVVGTTGES--ATLSHEEHKKVIEFVVDLVKGRVPVIAGTGSNATEEAIELTKFAEKLG 93 (288)
T ss_pred CCHHHHHHHHHHHHHHCCCEEEECCCCCCC--CCCCHHHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHHHCC
T ss_conf 538899999998997079858971355886--446888889999999877628778985377325899999999998689
Q ss_pred CEEEEEC---------HHHHHHHHH-HHHCCC----CCCCC---CCCCHHHHCCCC--CCCEEEE--EECCCCCHHHHHH
Q ss_conf 8699844---------869999998-874287----67765---422656622388--0208999--9669632688988
Q gi|254780869|r 252 RKIVLLG---------SSLKRVVSV-AIDVGI----IKKDQ---LFLSDESFGLYP--REQLIVI--ATGSQGEPRSALA 310 (559)
Q Consensus 252 R~v~i~G---------rs~~~~~~~-a~~~g~----l~~~~---~~i~~~~~~~~p--~~~~~ii--~TGsqge~~a~l~ 310 (559)
=-=++.- +-|.+.+++ |..... .|-|. .-+.++...++- .++++=| +||+-. +..
T Consensus 94 ~dg~L~vtPyYNKP~q~Gl~~HFkaia~~~~lPiiLYNvPsRTg~~l~peTv~rLA~~~~NI~aiKEa~g~l~----~~~ 169 (288)
T TIGR00674 94 VDGFLVVTPYYNKPTQEGLYQHFKAIAEEVDLPIILYNVPSRTGVSLEPETVKRLAEEPNNIVAIKEATGNLE----RIS 169 (288)
T ss_pred CCEEECCCCCCCCCCCCHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCHHHHHHHHCCCCCEEEEEECCCCHH----HHH
T ss_conf 5688458875518882138999999998716988984287641017862899997301677068872688889----999
Q ss_pred HHCCCCCCCCCCCC-CCEEEEEEECCCCHHHHHHHHHHHHHCCCEEEEECCCCCCEECCCCCCHHHHHHHHHHCCCCEEE
Q ss_conf 52027776530268-96699996158861778999997651031134303566641315788978999999754953999
Q gi|254780869|r 311 QLSRGEMRNVKLAE-KDTVIFSSRAIPGNEVAIGHIKNRLVEQGVRVIAEDAECPVHVSGHPYPNDLKRMYQWIRPQVLV 389 (559)
Q Consensus 311 ria~~~~~~i~l~~-~D~vI~ss~~ipGnE~~~~~~~n~l~~~g~~vi~~~~~~~iH~SGHa~~edl~~li~~ikPk~~I 389 (559)
+| ....+ +|-.||| |+....-. +...|+ ..-|.|-+|.-.+|+++|++..
T Consensus 170 ~i-------~~~~p~~dF~vls-----GDD~l~l~----~~~~Gg-------~GVISV~~N~~P~~~~emv~~a------ 220 (288)
T TIGR00674 170 EI-------KAITPDDDFVVLS-----GDDALTLP----ILALGG-------KGVISVTSNVAPKLMKEMVENA------ 220 (288)
T ss_pred HH-------HHHCCCCCEEEEE-----CCCCHHHH----HHHHCC-------CEEEEHHHHHHHHHHHHHHHHH------
T ss_conf 99-------9866898538884-----78611369----998189-------6167300555689999999998------
Q ss_pred EECCCHHHHHH-HHHHHHHC
Q ss_conf 70457799999-99878744
Q gi|254780869|r 390 AIHGEPLHLVA-HKELALQE 408 (559)
Q Consensus 390 PvHGe~rhl~~-h~~la~~~ 408 (559)
.-|.|+...+ |.+|..=|
T Consensus 221 -~~G~~~~A~EIh~kL~~L~ 239 (288)
T TIGR00674 221 -LEGDFAEAREIHQKLMPLF 239 (288)
T ss_pred -HCCCHHHHHHHHHHHHHHH
T ss_conf -5389789999998788898
No 67
>cd00952 CHBPH_aldolase Trans-o-hydroxybenzylidenepyruvate hydratase-aldolase (HBPHA) and trans-2'-carboxybenzalpyruvate hydratase-aldolase (CBPHA). HBPHA catalyzes HBP to salicyaldehyde and pyruvate. This reaction is part of the degradative pathways for naphthalene and naphthalenesulfonates by bacteria. CBPHA is homologous to HBPHA and catalyzes the cleavage of CBP to 2-carboxylbenzaldehyde and pyruvate during the degradation of phenanthrene. They are member of the DHDPS family of Schiff-base-dependent class I aldolases.
Probab=82.60 E-value=3.5 Score=20.37 Aligned_cols=77 Identities=10% Similarity=0.093 Sum_probs=54.5
Q ss_pred CCHHHHHH----CCCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHCCCC--EEEEECHHHHHHHHHHHHHHHHHC
Q ss_conf 89889986----087882999963564578887777879999999998627983--999941477899999999998718
Q gi|254780869|r 178 TDKDSLCA----IGNEGILALMCDSTNAMREGTCISEKGIKKNIYDIMKNAKGC--VLVTTFSSSVSRIRSIIDIAEQIG 251 (559)
Q Consensus 178 ~d~~~l~~----~~~~gv~~Li~esT~~~~~~~~~sE~~v~~~i~~~~~~~~gr--Viv~~fasni~Ri~~i~~~a~~~~ 251 (559)
.|+..+.+ +-+.||+.+++-+|..+ ..+.|..+-.+-++.+++..+|| |++.+-+.+..-..+..+.|++.|
T Consensus 26 iD~~~l~~lv~~li~~Gv~gl~~~GttGE--~~~Ls~~Er~~v~~~~~e~~~gr~pvi~G~~~~~t~~ai~~a~~a~~~G 103 (309)
T cd00952 26 VDLDETARLVERLIAAGVDGILTMGTFGE--CATLTWEEKQAFVATVVETVAGRVPVFVGATTLNTRDTIARTRALLDLG 103 (309)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEECCCCCH--HHHCCHHHHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHHHHCC
T ss_conf 37999999999999769998997923500--4348799999999999998389850996057505999999999998469
Q ss_pred CEEEE
Q ss_conf 86998
Q gi|254780869|r 252 RKIVL 256 (559)
Q Consensus 252 R~v~i 256 (559)
=.-++
T Consensus 104 ad~~l 108 (309)
T cd00952 104 ADGTM 108 (309)
T ss_pred CCEEE
T ss_conf 89999
No 68
>cd00408 DHDPS-like Dihydrodipicolinate synthase family. A member of the class I aldolases, which use an active-site lysine which stablilzes a reaction intermediate via Schiff base formation, and have TIM beta/alpha barrel fold. The dihydrodipicolinate synthase family comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways and includes such proteins as N-acetylneuraminate lyase, MosA protein, 5-keto-4-deoxy-glucarate dehydratase, trans-o-hydroxybenzylidenepyruvate hydratase-aldolase, trans-2'-carboxybenzalpyruvate hydratase-aldolase, and 2-keto-3-deoxy- gluconate aldolase. The family is also referred to as the N-acetylneuraminate lyase (NAL) family.
Probab=82.56 E-value=3.5 Score=20.36 Aligned_cols=77 Identities=22% Similarity=0.258 Sum_probs=51.7
Q ss_pred CCHHHHHH----CCCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHCCCC--EEEEECHHHHHHHHHHHHHHHHHC
Q ss_conf 89889986----087882999963564578887777879999999998627983--999941477899999999998718
Q gi|254780869|r 178 TDKDSLCA----IGNEGILALMCDSTNAMREGTCISEKGIKKNIYDIMKNAKGC--VLVTTFSSSVSRIRSIIDIAEQIG 251 (559)
Q Consensus 178 ~d~~~l~~----~~~~gv~~Li~esT~~~~~~~~~sE~~v~~~i~~~~~~~~gr--Viv~~fasni~Ri~~i~~~a~~~~ 251 (559)
.|+..+.+ +-+.|++.+++-+|.+ ++.+.|..+-.+-++.+.+..++| |++.+.+.+..-.....+.|++.|
T Consensus 15 iD~~~~~~~i~~l~~~Gv~gi~v~G~tG--E~~~Ls~~Er~~l~~~~~~~~~~~~pvi~gv~~~s~~~~~~~a~~a~~~G 92 (281)
T cd00408 15 VDLDALRRLVEFLIEAGVDGLVVLGTTG--EAPTLTDEERKEVIEAVVEAVAGRVPVIAGVGANSTREAIELARHAEEAG 92 (281)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEECEECC--CHHHCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHHHHCC
T ss_conf 4999999999999976999899685452--43138999999999999998089850999578788999999999999759
Q ss_pred CEEEE
Q ss_conf 86998
Q gi|254780869|r 252 RKIVL 256 (559)
Q Consensus 252 R~v~i 256 (559)
=.-++
T Consensus 93 ad~i~ 97 (281)
T cd00408 93 ADGVL 97 (281)
T ss_pred CCEEE
T ss_conf 99899
No 69
>PRK05749 3-deoxy-D-manno-octulosonic-acid transferase; Reviewed
Probab=82.43 E-value=3.5 Score=20.33 Aligned_cols=14 Identities=29% Similarity=0.190 Sum_probs=5.1
Q ss_pred ECCCHHHHHHHHHH
Q ss_conf 04577999999987
Q gi|254780869|r 391 IHGEPLHLVAHKEL 404 (559)
Q Consensus 391 vHGe~rhl~~h~~l 404 (559)
..||-..+..++++
T Consensus 307 t~GeL~~~Y~~a~i 320 (423)
T PRK05749 307 TMGELGLLYAIADI 320 (423)
T ss_pred CCCHHHHHHHHCCE
T ss_conf 88758899985787
No 70
>PRK07777 aminotransferase; Validated
Probab=82.09 E-value=3.5 Score=20.31 Aligned_cols=39 Identities=8% Similarity=0.176 Sum_probs=22.5
Q ss_pred HHHHHHHCCCCEEEEECHHH-------HHHHHHHHHHHHHHCCEEEE
Q ss_conf 99998627983999941477-------89999999999871886998
Q gi|254780869|r 217 IYDIMKNAKGCVLVTTFSSS-------VSRIRSIIDIAEQIGRKIVL 256 (559)
Q Consensus 217 i~~~~~~~~grViv~~fasn-------i~Ri~~i~~~a~~~~R~v~i 256 (559)
+++.+.. +-+.++-++.+| -++++.++++|++++--|+-
T Consensus 152 l~~~~~~-~tk~iil~~P~NPTG~v~s~e~l~~l~~la~~~~i~ii~ 197 (386)
T PRK07777 152 LRAAVTP-RTRALIVNSPHNPTGTVLSAAELAAIAELAVEHDLLVIT 197 (386)
T ss_pred HHHHCCC-CCEEEEECCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEC
T ss_conf 9974687-776999799969888488899999999998642978865
No 71
>cd00953 KDG_aldolase KDG (2-keto-3-deoxygluconate) aldolases found in archaea. This subfamily of enzymes is adapted for high thermostability and shows specificity for non-phosphorylated substrates. The enzyme catalyses the reversible aldol cleavage of 2-keto-3-dexoygluconate to pyruvate and glyceraldehyde, the third step of a modified non-phosphorylated Entner-Doudoroff pathway of glucose oxidation. KDG aldolase shows no significant sequence similarity to microbial 2-keto-3-deoxyphosphogluconate (KDPG) aldolases, and the enzyme shows no activity with glyceraldehyde 3-phosphate as substrate. The enzyme is a tetramer and a member of the DHDPS family of Schiff-base-dependent class I aldolases.
Probab=81.40 E-value=3.8 Score=20.07 Aligned_cols=76 Identities=13% Similarity=0.116 Sum_probs=48.7
Q ss_pred CCHHHHHH----CCCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECHHHHHHHHHHHHHHHHHCCE
Q ss_conf 89889986----08788299996356457888777787999999999862798399994147789999999999871886
Q gi|254780869|r 178 TDKDSLCA----IGNEGILALMCDSTNAMREGTCISEKGIKKNIYDIMKNAKGCVLVTTFSSSVSRIRSIIDIAEQIGRK 253 (559)
Q Consensus 178 ~d~~~l~~----~~~~gv~~Li~esT~~~~~~~~~sE~~v~~~i~~~~~~~~grViv~~fasni~Ri~~i~~~a~~~~R~ 253 (559)
.|+..+.+ +.+.||+.+++-+|.++.. +.|..+-.+-++ ...+..+++++.+-+.+......+.+.|++.|=.
T Consensus 17 iD~~~l~~~i~~l~~~Gv~gi~v~GstGE~~--~Ls~eEr~~vi~-~~~~~~~~vi~~vg~~~~~~ai~la~~A~~~Gad 93 (279)
T cd00953 17 IDKEKFKKHCENLISKGIDYVFVAGTTGLGP--SLSFQEKLELLK-AYSDITDKVIFQVGSLNLEESIELARAAKSFGIY 93 (279)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEECCHHHHHH--HCCHHHHHHHHH-HHHHHCCCEEEEECCCCHHHHHHHHHHHHHCCCC
T ss_conf 7999999999999977999999781312165--589999999999-9999679818997778799999999999977999
Q ss_pred EEE
Q ss_conf 998
Q gi|254780869|r 254 IVL 256 (559)
Q Consensus 254 v~i 256 (559)
-++
T Consensus 94 ~i~ 96 (279)
T cd00953 94 AIA 96 (279)
T ss_pred EEE
T ss_conf 899
No 72
>cd00950 DHDPS Dihydrodipicolinate synthase (DHDPS) is a key enzyme in lysine biosynthesis. It catalyzes the aldol condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a Schiff base formation between pyruvate and a lysine residue. The functional enzyme is a homotetramer consisting of a dimer of dimers. DHDPS is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways.
Probab=80.84 E-value=4 Score=19.94 Aligned_cols=77 Identities=21% Similarity=0.202 Sum_probs=51.2
Q ss_pred CCHHHHH----HCCCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHCCCC--EEEEECHHHHHHHHHHHHHHHHHC
Q ss_conf 8988998----6087882999963564578887777879999999998627983--999941477899999999998718
Q gi|254780869|r 178 TDKDSLC----AIGNEGILALMCDSTNAMREGTCISEKGIKKNIYDIMKNAKGC--VLVTTFSSSVSRIRSIIDIAEQIG 251 (559)
Q Consensus 178 ~d~~~l~----~~~~~gv~~Li~esT~~~~~~~~~sE~~v~~~i~~~~~~~~gr--Viv~~fasni~Ri~~i~~~a~~~~ 251 (559)
.|+..+. .+-+.||+.++.-+|.++ +.+.|..+-.+-++.+.+..++| |++.+.+.+........+.|++.|
T Consensus 18 iD~~~l~~~v~~l~~~Gv~gi~v~GstGE--~~~Ls~~Er~~l~~~~~~~~~~~~~vi~gv~~~~t~~~i~~a~~A~~~G 95 (284)
T cd00950 18 VDFDALERLIEFQIENGTDGLVVCGTTGE--SPTLSDEEHEAVIEAVVEAVNGRVPVIAGTGSNNTAEAIELTKRAEKAG 95 (284)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEECEECCC--HHHCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHHHHCC
T ss_conf 69999999999999769998996843512--4248999999999999997189750775078778999999999999839
Q ss_pred CEEEE
Q ss_conf 86998
Q gi|254780869|r 252 RKIVL 256 (559)
Q Consensus 252 R~v~i 256 (559)
=.-++
T Consensus 96 adai~ 100 (284)
T cd00950 96 ADAAL 100 (284)
T ss_pred CCEEE
T ss_conf 99899
No 73
>TIGR02546 III_secr_ATP type III secretion apparatus H+-transporting two-sector ATPase; InterPro: IPR013380 Proteins in this entry are found in a variety of bacteria, and are predicted to be ATPases involved in type III secretion systems. One example is YscN (P40290 from SWISSPROT) from Yersinia enterocolitica, which is thought to energise the YOP (Yersinia outer protein) secretion system .; GO: 0046961 hydrogen ion transporting ATPase activity rotational mechanism, 0030254 protein secretion by the type III secretion system.
Probab=80.78 E-value=4 Score=19.93 Aligned_cols=138 Identities=17% Similarity=0.335 Sum_probs=86.7
Q ss_pred EEEECCC-EE-EECCCCEECCCCCCCCCCCHHHHHH--CCCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHH-CCC
Q ss_conf 7987681-79-9833402467766542389889986--08788299996356457888777787999999999862-798
Q gi|254780869|r 152 VIRSPVG-NI-VHTGDWKLDDDAILGDVTDKDSLCA--IGNEGILALMCDSTNAMREGTCISEKGIKKNIYDIMKN-AKG 226 (559)
Q Consensus 152 ~I~t~~g-~i-~ytGDfk~d~~p~~g~~~d~~~l~~--~~~~gv~~Li~esT~~~~~~~~~sE~~v~~~i~~~~~~-~~g 226 (559)
+++|..| +| +|.+ +--|+.|-+..+.+ -++=.|.+||.| +. .||.|.++..+.+ ...
T Consensus 147 lLTcG~GQRiGIFA~-------aG~GKSTLL~~i~~g~~ADv~V~ALIGE--------RG---REVREFiE~~lg~e~~~ 208 (430)
T TIGR02546 147 LLTCGEGQRIGIFAG-------AGVGKSTLLGMIARGASADVNVIALIGE--------RG---REVREFIEHLLGEEGRK 208 (430)
T ss_pred HHHCCCCCEEEEEEC-------CCCCHHHHHHHHHCCCCCCEEEEEECCC--------CC---HHHHHHHHHCCCHHHCC
T ss_conf 440366530578708-------8861668999986189887899860278--------76---04788875207830524
Q ss_pred C--EEEEECH-HHHHHHHHHH------HHHHHHCCEEEEECHHHHHHHHHHHHCCCCCCCCC---CCCHHHHCCCC----
Q ss_conf 3--9999414-7789999999------99987188699844869999998874287677654---22656622388----
Q gi|254780869|r 227 C--VLVTTFS-SSVSRIRSII------DIAEQIGRKIVLLGSSLKRVVSVAIDVGIIKKDQL---FLSDESFGLYP---- 290 (559)
Q Consensus 227 r--Viv~~fa-sni~Ri~~i~------~~a~~~~R~v~i~Grs~~~~~~~a~~~g~l~~~~~---~i~~~~~~~~p---- 290 (559)
| |+++|+. |-++|++..+ +.=+..||+|+++=-||-|+-.++++-|.---.+. =+++.=+..+|
T Consensus 209 RsVlVvsTSDrss~eR~~AAy~ATaIAEYFRDQGk~VlLmmDSlTRfARA~REiGLAaGEP~aR~GyPPSVF~~LPRLLE 288 (430)
T TIGR02546 209 RSVLVVSTSDRSSLERLKAAYTATAIAEYFRDQGKRVLLMMDSLTRFARALREIGLAAGEPPARRGYPPSVFSSLPRLLE 288 (430)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEEECHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHCCHHHC
T ss_conf 24899607986679999998788799999997399079884027799999877887537840025778736650750122
Q ss_pred ------CC-----CEEEEEECCCCCHHH
Q ss_conf ------02-----089999669632688
Q gi|254780869|r 291 ------RE-----QLIVIATGSQGEPRS 307 (559)
Q Consensus 291 ------~~-----~~~ii~TGsqge~~a 307 (559)
+- +-|++-..+..||.|
T Consensus 289 RaG~~e~GSITA~YTVLvEgDd~~dP~A 316 (430)
T TIGR02546 289 RAGNSEKGSITALYTVLVEGDDMNDPIA 316 (430)
T ss_pred CCCCCCCCCEEEEEEEEECCCCCCCCHH
T ss_conf 7861129625345678762777998436
No 74
>KOG3592 consensus
Probab=80.72 E-value=2.3 Score=21.71 Aligned_cols=33 Identities=15% Similarity=0.268 Sum_probs=26.6
Q ss_pred HHHHHHHHHCCCEEEEECCCCCCCCCHHHHHHH
Q ss_conf 579876641246899605430121607888986
Q gi|254780869|r 58 ITFIMKERKNLMAIFITHAHEDHYGALHDLWSF 90 (559)
Q Consensus 58 ~~~l~~~~~~i~~i~iTH~H~DHiGalp~l~~~ 90 (559)
|=-|..+.++|++|+|||.-.|+.+||.-|+.+
T Consensus 72 fwklVrHldrVdaVLLthpg~dNLpginsllqr 104 (934)
T KOG3592 72 FWKLVRHLDRVDAVLLTHPGADNLPGINSLLQR 104 (934)
T ss_pred HHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHH
T ss_conf 688888776434654016666766550278899
No 75
>PRK06207 aspartate aminotransferase; Provisional
Probab=80.45 E-value=4.1 Score=19.85 Aligned_cols=39 Identities=15% Similarity=0.234 Sum_probs=21.1
Q ss_pred HHHHHHHHCCCCEEEEECHHH-------HHHHHHHHHHHHHHCCEEE
Q ss_conf 999998627983999941477-------8999999999987188699
Q gi|254780869|r 216 NIYDIMKNAKGCVLVTTFSSS-------VSRIRSIIDIAEQIGRKIV 255 (559)
Q Consensus 216 ~i~~~~~~~~grViv~~fasn-------i~Ri~~i~~~a~~~~R~v~ 255 (559)
.+++.+.. +-|.++-|+.+| -+.++.++++|++++--|+
T Consensus 171 ~le~~i~~-~tk~iil~nP~NPTG~v~s~e~l~~l~~la~~~~i~vi 216 (406)
T PRK06207 171 QLEAAFKA-GVRVFLFSNPNNPAGVVYSPEEIAQIAALARRYGATVI 216 (406)
T ss_pred HHHHHCCC-CCEEEEECCCCCCCCHHCCHHHHHHHHHHHHHCCEEEE
T ss_conf 99974544-87699988997985721339999999998755795999
No 76
>TIGR02198 rfaE_dom_I rfaE bifunctional protein, domain I; InterPro: IPR011913 RfaE is a protein involved in the biosynthesis of ADP-L-glycero-D-manno-heptose, a precursor for LPS inner core biosynthesis. RfaE is a bifunctional protein in Escherichia coli, and separate proteins in some other genome. The longer, N-terminal domain I (this family) is suggested to act in D-glycero-D-manno-heptose 1-phosphate biosynthesis, while domain II (IPR011914 from INTERPRO) adds ADP to yield ADP-D-glycero-D-manno-heptose .; GO: 0016773 phosphotransferase activity alcohol group as acceptor, 0016779 nucleotidyltransferase activity, 0005975 carbohydrate metabolic process.
Probab=79.97 E-value=4.2 Score=19.81 Aligned_cols=54 Identities=15% Similarity=0.361 Sum_probs=38.5
Q ss_pred HHHHHHHHHHHHHHCCCCEEEEECHH-HHHH--HHHHHHHHHHHCCEEEEECHH--HHHH
Q ss_conf 87999999999862798399994147-7899--999999998718869984486--9999
Q gi|254780869|r 210 EKGIKKNIYDIMKNAKGCVLVTTFSS-SVSR--IRSIIDIAEQIGRKIVLLGSS--LKRV 264 (559)
Q Consensus 210 E~~v~~~i~~~~~~~~grViv~~fas-ni~R--i~~i~~~a~~~~R~v~i~Grs--~~~~ 264 (559)
|..+-+.+.+.+.+.+. ||++-|+= =+.+ ++++|++|++.|++|.++.++ +.+|
T Consensus 132 ~~~L~~~~~~~l~~~d~-VvLSDYaKGvLt~~v~~~~I~~Ar~~~~pVlVDPKg~df~~Y 190 (321)
T TIGR02198 132 EARLLAAIKEQLASADA-VVLSDYAKGVLTPSVVQEVIAAAREAGKPVLVDPKGKDFSRY 190 (321)
T ss_pred HHHHHHHHHHHHCCCCE-EEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCHHHH
T ss_conf 99999999997232878-999866876358578999999999668919980787623451
No 77
>PRK12564 carbamoyl phosphate synthase small subunit; Reviewed
Probab=79.63 E-value=4 Score=19.92 Aligned_cols=41 Identities=27% Similarity=0.365 Sum_probs=19.6
Q ss_pred CCCCCHHHHHHHHHHCCCCE--EEEECCCHHHHHHHHHHHHHCCCC
Q ss_conf 57889789999997549539--997045779999999878744786
Q gi|254780869|r 368 SGHPYPNDLKRMYQWIRPQV--LVAIHGEPLHLVAHKELALQEGIA 411 (559)
Q Consensus 368 SGHa~~edl~~li~~ikPk~--~IPvHGe~rhl~~h~~la~~~gv~ 411 (559)
-|=++.+++...++.+|-=. -+|+-|= ..-|.-||.++|.+
T Consensus 220 NGPGDP~~~~~~i~~ik~li~~~~PifGI---CLGHQllalA~Ga~ 262 (355)
T PRK12564 220 NGPGDPAALDYAIEMIKELLEGKIPIFGI---CLGHQLLALALGAK 262 (355)
T ss_pred CCCCCHHHHHHHHHHHHHHHCCCCCEEEE---CHHHHHHHHHCCCE
T ss_conf 99999688799999999985269878998---88799999971984
No 78
>pfam00701 DHDPS Dihydrodipicolinate synthetase family. This family has a TIM barrel structure.
Probab=79.47 E-value=4.4 Score=19.64 Aligned_cols=77 Identities=26% Similarity=0.243 Sum_probs=50.3
Q ss_pred CCHHHHHH----CCCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHCCCC--EEEEECHHHHHHHHHHHHHHHHHC
Q ss_conf 89889986----087882999963564578887777879999999998627983--999941477899999999998718
Q gi|254780869|r 178 TDKDSLCA----IGNEGILALMCDSTNAMREGTCISEKGIKKNIYDIMKNAKGC--VLVTTFSSSVSRIRSIIDIAEQIG 251 (559)
Q Consensus 178 ~d~~~l~~----~~~~gv~~Li~esT~~~~~~~~~sE~~v~~~i~~~~~~~~gr--Viv~~fasni~Ri~~i~~~a~~~~ 251 (559)
.|+..+.+ +-+.||+.+++-+|.++.. +.|..+-.+-++.+.+..+|| |++.+.+.+..-..+..+.|++.|
T Consensus 19 iD~~~~~~~i~~l~~~Gv~gi~v~GstGE~~--~Ls~~Er~~v~~~~~~~~~~~~pvi~gv~~~st~~~i~~a~~A~~~G 96 (289)
T pfam00701 19 LDEEALRKLIEFLINKGADGLFVGGTTGESF--TLSTEEHEQLIEITVDEAKGRIPVIAGTGSNSTREAIHLAQLAEAAG 96 (289)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEECEECCCCC--CCCHHHHHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHHHHHHHCC
T ss_conf 6999999999999977999999783640311--38899999999999998199862863788878999999999999749
Q ss_pred CEEEE
Q ss_conf 86998
Q gi|254780869|r 252 RKIVL 256 (559)
Q Consensus 252 R~v~i 256 (559)
=.-++
T Consensus 97 ad~i~ 101 (289)
T pfam00701 97 ADGVL 101 (289)
T ss_pred CCEEE
T ss_conf 99788
No 79
>PRK03620 5-dehydro-4-deoxyglucarate dehydratase; Provisional
Probab=78.23 E-value=4.8 Score=19.38 Aligned_cols=75 Identities=12% Similarity=0.145 Sum_probs=47.6
Q ss_pred CCHHHHHH----CCCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHCCCC--EEEEECHHHHHHHHHHHHHHHHHC
Q ss_conf 89889986----087882999963564578887777879999999998627983--999941477899999999998718
Q gi|254780869|r 178 TDKDSLCA----IGNEGILALMCDSTNAMREGTCISEKGIKKNIYDIMKNAKGC--VLVTTFSSSVSRIRSIIDIAEQIG 251 (559)
Q Consensus 178 ~d~~~l~~----~~~~gv~~Li~esT~~~~~~~~~sE~~v~~~i~~~~~~~~gr--Viv~~fasni~Ri~~i~~~a~~~~ 251 (559)
.|+..+.+ +-+.||+.+++-+|.++ +.+.|..+-.+-++.+++...|| |++.+ ++|..-..++.+.|++.|
T Consensus 19 iD~~~l~~~v~~li~~Gv~gi~v~GstGE--~~~Ls~eEr~~v~~~~v~~~~grvpvi~gv-g~~t~~ai~la~~A~~~G 95 (296)
T PRK03620 19 FDEAAYREHLEWLAPYGAAALFAAGGTGE--FFSLTPDEYSQVVRAAVEACAGRVPVIAGA-GGGTAQAIEYAQAAERAG 95 (296)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEECCCCCC--HHHCCHHHHHHHHHHHHHHHCCCCEEEECC-CCCHHHHHHHHHHHHHCC
T ss_conf 59999999999999779998996842313--434899999999999999838973598257-753799999999999829
Q ss_pred CEEE
Q ss_conf 8699
Q gi|254780869|r 252 RKIV 255 (559)
Q Consensus 252 R~v~ 255 (559)
=.-+
T Consensus 96 adai 99 (296)
T PRK03620 96 ADGI 99 (296)
T ss_pred CCEE
T ss_conf 9989
No 80
>PRK09331 Sep-tRNA:Cys-tRNA synthetase; Provisional
Probab=78.20 E-value=4.8 Score=19.38 Aligned_cols=56 Identities=18% Similarity=0.239 Sum_probs=38.8
Q ss_pred CCCCCCCHHHHHHHHHHHHHH---CCCCEEEE--EC-HHHHHHHHHHHHHHHHHCCEEEEEC
Q ss_conf 888777787999999999862---79839999--41-4778999999999987188699844
Q gi|254780869|r 203 REGTCISEKGIKKNIYDIMKN---AKGCVLVT--TF-SSSVSRIRSIIDIAEQIGRKIVLLG 258 (559)
Q Consensus 203 ~~~~~~sE~~v~~~i~~~~~~---~~grViv~--~f-asni~Ri~~i~~~a~~~~R~v~i~G 258 (559)
.+....+-....+.++++.++ ++..++++ +| --|.+-++.|.++|.++|-++.+.+
T Consensus 133 ~~~~~I~~~~~~~~Iee~~~e~gk~~aL~llt~pdy~yGn~~d~~~i~~iah~~~ip~lvde 194 (386)
T PRK09331 133 YPDYRITPEAYAEKIEEVEDETGKPPALALLTHVDGNYGNLHDAKKIAKVAHQYGIPLLLNG 194 (386)
T ss_pred CCCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHCCCCEEEEC
T ss_conf 72345080057999999998618985599996888664454638999999987498189814
No 81
>PRK08175 aminotransferase; Validated
Probab=78.07 E-value=4.8 Score=19.35 Aligned_cols=41 Identities=12% Similarity=0.312 Sum_probs=25.9
Q ss_pred HHHHHHHHHC--CCCEEEEECHHH-------HHHHHHHHHHHHHHCCEEE
Q ss_conf 9999998627--983999941477-------8999999999987188699
Q gi|254780869|r 215 KNIYDIMKNA--KGCVLVTTFSSS-------VSRIRSIIDIAEQIGRKIV 255 (559)
Q Consensus 215 ~~i~~~~~~~--~grViv~~fasn-------i~Ri~~i~~~a~~~~R~v~ 255 (559)
..+++++++. +-+.++-|+.+| -+++++++++|++++--|+
T Consensus 152 ~~le~~~~~~~~ktk~iiln~P~NPTG~v~s~e~l~~i~~~a~~~~i~vi 201 (395)
T PRK08175 152 NELERAIRESYPKPKMMILGFPSNPTAQCVELEFFEKVVALAKRYDVLVV 201 (395)
T ss_pred HHHHHHHHHCCCCCEEEEECCCCCCCCCCCCHHHHHHHHHHHHHCCEEEE
T ss_conf 41999997268774599988999988875799999999998886694898
No 82
>CHL00197 carA carbamoyl-phosphate synthase arginine-specific small subunit; Provisional
Probab=77.86 E-value=4.9 Score=19.31 Aligned_cols=42 Identities=17% Similarity=0.203 Sum_probs=22.0
Q ss_pred CCCCCCHHHHHHHHHHCCCC---EEEEECCCHHHHHHHHHHHHHCCCC
Q ss_conf 15788978999999754953---9997045779999999878744786
Q gi|254780869|r 367 VSGHPYPNDLKRMYQWIRPQ---VLVAIHGEPLHLVAHKELALQEGIA 411 (559)
Q Consensus 367 ~SGHa~~edl~~li~~ikPk---~~IPvHGe~rhl~~h~~la~~~gv~ 411 (559)
..|=++.+++...++.++=- .-+||-|= ..-|.-||.+.|.+
T Consensus 242 SNGPGDP~~~~~~i~~i~~li~~~~iPifGI---CLGHQlLalA~Gak 286 (383)
T CHL00197 242 SNGPGDPSTVHYGIKTVKKLIKKANIPIFGI---CMGHQILSLALEAK 286 (383)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHCCCCCEEEE---CHHHHHHHHHCCCE
T ss_conf 8999997898999999999996489978995---58899999973983
No 83
>PRK03170 dihydrodipicolinate synthase; Provisional
Probab=77.04 E-value=5.1 Score=19.15 Aligned_cols=77 Identities=19% Similarity=0.179 Sum_probs=51.9
Q ss_pred CCHHHHH----HCCCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHCCCC--EEEEECHHHHHHHHHHHHHHHHHC
Q ss_conf 8988998----6087882999963564578887777879999999998627983--999941477899999999998718
Q gi|254780869|r 178 TDKDSLC----AIGNEGILALMCDSTNAMREGTCISEKGIKKNIYDIMKNAKGC--VLVTTFSSSVSRIRSIIDIAEQIG 251 (559)
Q Consensus 178 ~d~~~l~----~~~~~gv~~Li~esT~~~~~~~~~sE~~v~~~i~~~~~~~~gr--Viv~~fasni~Ri~~i~~~a~~~~ 251 (559)
.|+..+. .+.+.||+.+++-+|.++ +.+.|..+-.+-++.+.+..++| |++.+-+.+.....+.++.|++.|
T Consensus 19 iD~~~l~~~v~~l~~~Gv~Gi~~~GstGE--~~~Ls~~Er~~v~~~~~~~~~~~~pvi~gv~~~~t~~~i~~a~~A~~~G 96 (292)
T PRK03170 19 VDFAALRKLVDYQIANGTDGLVVVGTTGE--SPTLTHEEHEELIRAVVEAVNGRVPVIAGTGSNSTAEAIELTKFAEKAG 96 (292)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEECEECCC--CCCCCHHHHHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHHHHHHHCC
T ss_conf 59999999999999779999996832414--1128999999999999987389712884378767999999999898759
Q ss_pred CEEEE
Q ss_conf 86998
Q gi|254780869|r 252 RKIVL 256 (559)
Q Consensus 252 R~v~i 256 (559)
=.-++
T Consensus 97 adav~ 101 (292)
T PRK03170 97 ADGAL 101 (292)
T ss_pred CCEEE
T ss_conf 99899
No 84
>PRK09082 putative aminotransferase; Validated
Probab=74.47 E-value=6 Score=18.69 Aligned_cols=20 Identities=0% Similarity=0.101 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHCCEEEE
Q ss_conf 89999999999871886998
Q gi|254780869|r 237 VSRIRSIIDIAEQIGRKIVL 256 (559)
Q Consensus 237 i~Ri~~i~~~a~~~~R~v~i 256 (559)
-++++.++++|++++-.|+.
T Consensus 182 ~~~l~~l~~la~~~~i~ii~ 201 (386)
T PRK09082 182 AADMDALAQLIAGTDILVLS 201 (386)
T ss_pred HHHHHHHHHHHHHCCCEEEE
T ss_conf 35599999999981947971
No 85
>PRK10966 exonuclease subunit SbcD; Provisional
Probab=74.14 E-value=6.1 Score=18.64 Aligned_cols=91 Identities=13% Similarity=0.195 Sum_probs=39.3
Q ss_pred EEEECCCCEECCCCCCCCCC-C-HHH----HHH-CCCCCCEEEEECCCCCCCCCCCCC-HHHHHHHHHHHHHHCCCCEEE
Q ss_conf 79983340246776654238-9-889----986-087882999963564578887777-879999999998627983999
Q gi|254780869|r 159 NIVHTGDWKLDDDAILGDVT-D-KDS----LCA-IGNEGILALMCDSTNAMREGTCIS-EKGIKKNIYDIMKNAKGCVLV 230 (559)
Q Consensus 159 ~i~ytGDfk~d~~p~~g~~~-d-~~~----l~~-~~~~gv~~Li~esT~~~~~~~~~s-E~~v~~~i~~~~~~~~grViv 230 (559)
+|+||.||-+..+ .+|+.. + ... +.+ +.+++||++|.-|---++..++.. ..-..+.+.++ .++.-.|++
T Consensus 2 kiLHTSDWHLGk~-l~g~sr~~eq~~fL~~l~~~~~~e~vDavlIAGDifD~~~P~~~A~~l~~~fl~~l-~~~~~~vvv 79 (402)
T PRK10966 2 RILHTSDWHLGQN-FYSKSRAAEHQAFLDWLLEQAQEHQVDAIIVAGDIFDTGSPPSYARELYNRFVVNL-QQTGCQLVV 79 (402)
T ss_pred CEEEHHHHHCCCC-CCCCCHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHH-HHCCCCEEE
T ss_conf 5076103343821-48978299999999999999998499999988755799999999999999999999-966996899
Q ss_pred EECHH-HHHHHHHHHHHHHHHC
Q ss_conf 94147-7899999999998718
Q gi|254780869|r 231 TTFSS-SVSRIRSIIDIAEQIG 251 (559)
Q Consensus 231 ~~fas-ni~Ri~~i~~~a~~~~ 251 (559)
.+=.. +.+|+..--.+....|
T Consensus 80 IaGNHDS~~rL~~~~~ll~~~~ 101 (402)
T PRK10966 80 LAGNHDSVATLNESRDLLAFLN 101 (402)
T ss_pred EECCCCCHHHHHCCHHHHHHCC
T ss_conf 9479898777624365788678
No 86
>TIGR03249 KdgD 5-dehydro-4-deoxyglucarate dehydratase. 5-dehydro-4-deoxyglucarate dehydratase not only catalyzes the dehydration of the substrate (diol to ketone + water), but causes the decarboxylation of the intermediate product to yield 2-oxoglutarate semialdehyde (2,5-dioxopentanoate). The gene for the enzyme is usually observed in the vicinity of transporters and dehydratases handling D-galactarate and D-gluconate as well as aldehyde dehydrogenases which convert the product to alpha-ketoglutarate.
Probab=73.20 E-value=6.4 Score=18.48 Aligned_cols=75 Identities=17% Similarity=0.145 Sum_probs=46.0
Q ss_pred CCHHHHHH----CCCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCE--EEEECHHHHHHHHHHHHHHHHHC
Q ss_conf 89889986----0878829999635645788877778799999999986279839--99941477899999999998718
Q gi|254780869|r 178 TDKDSLCA----IGNEGILALMCDSTNAMREGTCISEKGIKKNIYDIMKNAKGCV--LVTTFSSSVSRIRSIIDIAEQIG 251 (559)
Q Consensus 178 ~d~~~l~~----~~~~gv~~Li~esT~~~~~~~~~sE~~v~~~i~~~~~~~~grV--iv~~fasni~Ri~~i~~~a~~~~ 251 (559)
.|++.+.+ +-+.||+.+++-+|.++. .+.|..+-.+-++.+.+..+||+ ++.+ ++|.....++.+.|++.|
T Consensus 23 iD~~~~~~~i~~l~~~Gv~gi~v~GstGE~--~~Ls~eEr~~l~~~~~~~~~g~~~vi~gv-g~~t~~ai~la~~a~~~G 99 (296)
T TIGR03249 23 FDEAAYRENIEWLLGYGLEALFAAGGTGEF--FSLTPAEYEQVVEIAVSTAKGKVPVYTGV-GGNTSDAIEIARLAEKAG 99 (296)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEECCCCCCH--HHCCHHHHHHHHHHHHHHCCCCCEEECCC-CHHHHHHHHHHHHHHHCC
T ss_conf 799999999999997799989978305166--65899999999999999838984151278-612999999999998759
Q ss_pred CEEE
Q ss_conf 8699
Q gi|254780869|r 252 RKIV 255 (559)
Q Consensus 252 R~v~ 255 (559)
=.-+
T Consensus 100 ad~v 103 (296)
T TIGR03249 100 ADGY 103 (296)
T ss_pred CCEE
T ss_conf 9978
No 87
>cd00954 NAL N-Acetylneuraminic acid aldolase, also called N-acetylneuraminate lyase (NAL), which catalyses the reversible aldol reaction of N-acetyl-D-mannosamine and pyruvate to give N-acetyl-D-neuraminic acid (D-sialic acid). It has a widespread application as biocatalyst for the synthesis of sialic acid and its derivatives. This enzyme has been shown to be quite specific for pyruvate as the donor, but flexible to a variety of D- and, to some extent, L-hexoses and pentoses as acceptor substrates. NAL is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases.
Probab=73.18 E-value=6.4 Score=18.48 Aligned_cols=67 Identities=18% Similarity=0.229 Sum_probs=47.1
Q ss_pred CCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHCCCC--EEEEECHHHHHHHHHHHHHHHHHCCEEEE
Q ss_conf 7882999963564578887777879999999998627983--99994147789999999999871886998
Q gi|254780869|r 188 NEGILALMCDSTNAMREGTCISEKGIKKNIYDIMKNAKGC--VLVTTFSSSVSRIRSIIDIAEQIGRKIVL 256 (559)
Q Consensus 188 ~~gv~~Li~esT~~~~~~~~~sE~~v~~~i~~~~~~~~gr--Viv~~fasni~Ri~~i~~~a~~~~R~v~i 256 (559)
+.|++.+++-+|.++ ..+.|..+-.+-++.+.+..+|| |++.+.+.+.....+..+.|++.|=.-++
T Consensus 33 ~~Gv~gi~v~GstGE--~~~Ls~~Er~~l~~~~~~~~~~r~pvi~gv~~~s~~~ai~~a~~a~~~Gad~v~ 101 (288)
T cd00954 33 KQGVDGLYVNGSTGE--GFLLSVEERKQIAEIVAEAAKGKVTLIAHVGSLNLKESQELAKHAEELGYDAIS 101 (288)
T ss_pred HCCCCEEEECCCCCC--CCCCCHHHHHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHHHHHHHCCCCEEE
T ss_conf 779989997935425--213899999999999999728986087358864599999999999864978677
No 88
>pfam04179 Init_tRNA_PT Initiator tRNA phosphoribosyl transferase. This enzyme (EC:2.4.2.-) modifies exclusively the initiator tRNA in position 64 using 5'-phosphoribosyl-1'-pyrophosphate as the modification donor. As the initiator tRNA participates both in the initiation and elongation of translation, the 2'-O-ribosyl phosphate modification discriminates the initiator tRNAs from the elongator tRNAs.
Probab=72.62 E-value=3.9 Score=20.00 Aligned_cols=43 Identities=30% Similarity=0.446 Sum_probs=31.5
Q ss_pred EEEEECCCEEEECCCCEECCCCCCCCCCCHHHHHHCCCCCCEEEEECCCCCC
Q ss_conf 6798768179983340246776654238988998608788299996356457
Q gi|254780869|r 151 LVIRSPVGNIVHTGDWKLDDDAILGDVTDKDSLCAIGNEGILALMCDSTNAM 202 (559)
Q Consensus 151 ~~I~t~~g~i~ytGDfk~d~~p~~g~~~d~~~l~~~~~~gv~~Li~esT~~~ 202 (559)
-.+++-+| |||-|.| -..+.|++.+.-+++.| =+.|+|||.-+
T Consensus 54 ~YFKSTDG---H~~~W~F-----S~RRLNLhLl~~~~~~g-G~iIVDSTRrG 96 (445)
T pfam04179 54 AYFKSTDG---HTGQWSF-----STRRLNLHLLPIIGENG-GCIIVDSTRRG 96 (445)
T ss_pred EEEECCCC---CCCCCCC-----CCCCCCHHHHHHHHHCC-CEEEEECCCCC
T ss_conf 36734688---8775001-----43114178899998649-86997144445
No 89
>KOG1546 consensus
Probab=72.05 E-value=4.2 Score=19.79 Aligned_cols=24 Identities=17% Similarity=0.127 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHHHCCCCEEE
Q ss_conf 999999999999999828886789
Q gi|254780869|r 526 LRESISSALRSLLKKVWGKKPLVT 549 (559)
Q Consensus 526 lk~~ir~~irk~~~k~~~KkP~V~ 549 (559)
-+..+-++.+...+..+.-+|-..
T Consensus 326 ~~~lvl~~~~~~~~~g~sQ~P~L~ 349 (362)
T KOG1546 326 NKLLVLRARGALKKQGFSQEPGLY 349 (362)
T ss_pred HHHHHHHHHHHHHCCCCCCCCCCC
T ss_conf 599999886554016744376666
No 90
>cd00951 KDGDH 5-dehydro-4-deoxyglucarate dehydratase, also called 5-keto-4-deoxy-glucarate dehydratase (KDGDH), which is member of dihydrodipicolinate synthase (DHDPS) family that comprises several pyruvate-dependent class I aldolases. The enzyme is involved in glucarate metabolism, and its mechanism presumbly involves a Schiff-base intermediate similar to members of DHDPS family. While in the case of Pseudomonas sp. 5-dehydro-4-deoxy-D-glucarate is degraded by KDGDH to 2,5-dioxopentanoate, in certain species of Enterobacteriaceae it is degraded instead to pyruvate and glycerate.
Probab=72.00 E-value=6.8 Score=18.29 Aligned_cols=76 Identities=17% Similarity=0.176 Sum_probs=48.4
Q ss_pred CCHHHHHH----CCCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCE--EEEECHHHHHHHHHHHHHHHHHC
Q ss_conf 89889986----0878829999635645788877778799999999986279839--99941477899999999998718
Q gi|254780869|r 178 TDKDSLCA----IGNEGILALMCDSTNAMREGTCISEKGIKKNIYDIMKNAKGCV--LVTTFSSSVSRIRSIIDIAEQIG 251 (559)
Q Consensus 178 ~d~~~l~~----~~~~gv~~Li~esT~~~~~~~~~sE~~v~~~i~~~~~~~~grV--iv~~fasni~Ri~~i~~~a~~~~ 251 (559)
.|++.+.+ +-+.||+.+++-+|.++.. +.|..+-.+-++.+.+.++||+ ++.+ +.+.....++.+.|++.|
T Consensus 18 iD~~~~~~~i~~l~~~Gv~gi~v~GstGE~~--~Ls~eEr~~v~~~~~~~~~g~~~vi~g~-g~~t~~~i~la~~a~~~G 94 (289)
T cd00951 18 FDEDAYRAHVEWLLSYGAAALFAAGGTGEFF--SLTPDEYAQVVRAAVEETAGRVPVLAGA-GYGTATAIAYAQAAEKAG 94 (289)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEECCHHHCCC--CCCHHHHHHHHHHHHHHCCCCCEEEECC-CCHHHHHHHHHHHHHHCC
T ss_conf 7999999999999977999999793300621--2899999999999999818985174067-631999999999999759
Q ss_pred CEEEE
Q ss_conf 86998
Q gi|254780869|r 252 RKIVL 256 (559)
Q Consensus 252 R~v~i 256 (559)
=.-++
T Consensus 95 adav~ 99 (289)
T cd00951 95 ADGIL 99 (289)
T ss_pred CCEEE
T ss_conf 99999
No 91
>cd02001 TPP_ComE_PpyrDC Thiamine pyrophosphate (TPP) family, ComE and PpyrDC subfamily, TPP-binding module; composed of proteins similar to sulfopyruvate decarboxylase beta subunit (ComE) and phosphonopyruvate decarboxylase (Ppyr decarboxylase). Methanococcus jannaschii sulfopyruvate decarboxylase (ComDE) is a dodecamer of six alpha (D) subunits and six (E) beta subunits which, catalyzes the decarboxylation of sulfopyruvic acid to sulfoacetaldehyde in the coenzyme M pathway. Ppyr decarboxylase is a homotrimeric enzyme which functions in the biosynthesis of C-P compounds such as bialaphos tripeptide in Streptomyces hygroscopicus. Ppyr decarboxylase and ComDE require TPP and divalent metal cation cofactors.
Probab=70.36 E-value=5.1 Score=19.16 Aligned_cols=104 Identities=13% Similarity=0.036 Sum_probs=49.4
Q ss_pred ECCCCCCCCCEEEEEECCCEEEECCCCEECCCCCCCCCCCHHHHHHCC---CCCCE-EEEECCCCCCCCCC-CCCHHHHH
Q ss_conf 556777765356798768179983340246776654238988998608---78829-99963564578887-77787999
Q gi|254780869|r 140 RVNHSIPETMALVIRSPVGNIVHTGDWKLDDDAILGDVTDKDSLCAIG---NEGIL-ALMCDSTNAMREGT-CISEKGIK 214 (559)
Q Consensus 140 ~~~Hsip~a~~~~I~t~~g~i~ytGDfk~d~~p~~g~~~d~~~l~~~~---~~gv~-~Li~esT~~~~~~~-~~sE~~v~ 214 (559)
.++|..|-+.|+++.+|...|+.+||=- ...++..|+-++ ..++. +++-++.+...-+. +.+. .
T Consensus 43 sMG~~~~~alG~al~~p~kVi~idGDGs--------~lM~lg~LaTi~~~~~~nl~~ivlnN~~~~s~GgQ~t~~~---~ 111 (157)
T cd02001 43 SMGLAGSIGLGLALGLSRKVIVVDGDGS--------LLMNPGVLLTAGEFTPLNLILVVLDNRAYGSTGGQPTPSS---N 111 (157)
T ss_pred HHHHHHHHHHHHHHCCCCCEEEEECCHH--------HHHCCCHHHHHHHCCCCCEEEEEEECCCCCCCCCCCCCCC---C
T ss_conf 0132889999998538996899957558--------8752461999986389887999997975324678567544---6
Q ss_pred HHHHHHHHHCCCCEEEEECHHHHHHHHHHHHHHHHHCCEEEEE
Q ss_conf 9999998627983999941477899999999998718869984
Q gi|254780869|r 215 KNIYDIMKNAKGCVLVTTFSSSVSRIRSIIDIAEQIGRKIVLL 257 (559)
Q Consensus 215 ~~i~~~~~~~~grViv~~fasni~Ri~~i~~~a~~~~R~v~i~ 257 (559)
-.+..+-+...-+. ...++.+-+.+.++-+.+++.++++.
T Consensus 112 ~df~~iA~a~G~~~---~~v~~~~el~~al~~~l~~~GP~fIe 151 (157)
T cd02001 112 VNLEAWAAACGYLV---LSAPLLGGLGSEFAGLLATTGPTLLH 151 (157)
T ss_pred CCHHHHHHHCCCCE---EEECCHHHHHHHHHHHHCCCCCEEEE
T ss_conf 69999999869857---99589999999999998499998999
No 92
>PRK05620 acyl-CoA synthetase; Validated
Probab=70.34 E-value=7.3 Score=18.04 Aligned_cols=52 Identities=21% Similarity=0.219 Sum_probs=30.5
Q ss_pred ECCCEEEEECCC-CEEEEEEEECCCEEECCCCEECCCCHHHHHHHHHHHCCEEEEEEE
Q ss_conf 003227897389-704501232132021233100255058899997403874999999
Q gi|254780869|r 416 VRNGKMLRLFPD-PIEIIDEVVHGLFLKDGFLIGKFADLGIAKRRQLSFVGHLSVNVL 472 (559)
Q Consensus 416 ~~NGd~i~l~~~-~~~i~~~v~~g~~~vDG~~i~~~~~~vl~eR~~Ls~~GiV~V~vi 472 (559)
..-||+..++++ .+.+.++.+- -+-+.|..+.+ .+. |...++..++.-+.|+
T Consensus 432 ~~TGDlg~~d~dG~l~~~GR~~d-~Ik~~G~~V~p-~EI---E~~L~~hp~V~eaaVv 484 (571)
T PRK05620 432 LRTGDVGSVTSDGFLTIHDRARD-VIRSGGEWIYS-AQL---ENLILATEEVVEAAVI 484 (571)
T ss_pred EEECCEEEECCCCEEEEEECCCC-EEEECCEEECH-HHH---HHHHHHCCCCCEEEEE
T ss_conf 87388628989942999872238-89989999899-999---9999729981179999
No 93
>TIGR01977 am_tr_V_EF2568 cysteine desulfurase family protein; InterPro: IPR010969 This entry describes a subfamily of probable pyridoxal phosphate-dependent enzymes in the aminotransferase class V family. Related families contain members active as cysteine desulphurases, selenocysteine lyases, or both. The members of this family form a distinct clade and all are shorter at the N terminus. The function of members of this family are unknown..
Probab=70.26 E-value=7.4 Score=18.03 Aligned_cols=102 Identities=24% Similarity=0.384 Sum_probs=48.7
Q ss_pred EEEEEECCCEEEECCCCEECCCCCCCCCCCHHHHHHCCCC--CCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHCCCC
Q ss_conf 5679876817998334024677665423898899860878--82999963564578887777879999999998627983
Q gi|254780869|r 150 ALVIRSPVGNIVHTGDWKLDDDAILGDVTDKDSLCAIGNE--GILALMCDSTNAMREGTCISEKGIKKNIYDIMKNAKGC 227 (559)
Q Consensus 150 ~~~I~t~~g~i~ytGDfk~d~~p~~g~~~d~~~l~~~~~~--gv~~Li~esT~~~~~~~~~sE~~v~~~i~~~~~~~~gr 227 (559)
||.++-..|.=|+|.=+ .|+.|. + -|..+.++ ||-+=++-+- .+|.--. +.|.+.+++.|=.
T Consensus 81 Gl~lknr~g~hVi~t~m--EHNsV~-R-----PL~~L~~~~~g~~~~iv~~~---~~G~~~~-----e~i~~~~~~~kTk 144 (384)
T TIGR01977 81 GLILKNREGDHVITTPM--EHNSVL-R-----PLEKLKEERIGVEITIVKCD---NEGLISP-----ERIKRAIKKNKTK 144 (384)
T ss_pred CCCCCCCCCCCEEECCC--CHHHHH-H-----HHHHHHHCCCCEEEEEECCC---CCCCCCH-----HHHHHHCCCCCCC
T ss_conf 33000559996786476--023664-3-----89999735997589986278---8852167-----9999853378830
Q ss_pred EEEEECHHHH----HHHHHHH-HHHHHHCCEEEEECHHHHHHHHHHHHCCCCCC
Q ss_conf 9999414778----9999999-99987188699844869999998874287677
Q gi|254780869|r 228 VLVTTFSSSV----SRIRSII-DIAEQIGRKIVLLGSSLKRVVSVAIDVGIIKK 276 (559)
Q Consensus 228 Viv~~fasni----~Ri~~i~-~~a~~~~R~v~i~Grs~~~~~~~a~~~g~l~~ 276 (559)
.+|-+-+||| ==|.+|. ++|++.| +++. +++|+..|.++.
T Consensus 145 ~iv~~HaSNV~G~ilpiEEIgR~lA~e~g--~~~~-------~DAaQtAGv~~I 189 (384)
T TIGR01977 145 LIVVSHASNVTGTILPIEEIGRELAKENG--IFFI-------LDAAQTAGVIPI 189 (384)
T ss_pred EEEEECHHHHCCCCCCHHHHHHHHHHHCC--CEEE-------EECCCCCCCCHH
T ss_conf 04322003010311257899999998679--7399-------832000375410
No 94
>PRK04147 N-acetylneuraminate lyase; Provisional
Probab=69.36 E-value=7.7 Score=17.90 Aligned_cols=68 Identities=16% Similarity=0.213 Sum_probs=47.9
Q ss_pred CCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHCCCC--EEEEECHHHHHHHHHHHHHHHHHCCEEEE
Q ss_conf 87882999963564578887777879999999998627983--99994147789999999999871886998
Q gi|254780869|r 187 GNEGILALMCDSTNAMREGTCISEKGIKKNIYDIMKNAKGC--VLVTTFSSSVSRIRSIIDIAEQIGRKIVL 256 (559)
Q Consensus 187 ~~~gv~~Li~esT~~~~~~~~~sE~~v~~~i~~~~~~~~gr--Viv~~fasni~Ri~~i~~~a~~~~R~v~i 256 (559)
.+.||+.+++-+|.++. .+.|..+-.+-++.+.+..++| |++.+.+.+..-.....+.|++.|=.-++
T Consensus 35 ~~~Gv~Gi~~~GstGE~--~~Ls~~Er~~l~~~~~~~~~~r~pvi~gv~~~st~~ai~~a~~a~~~Gad~v~ 104 (294)
T PRK04147 35 EKQGIDGLYVGGSTGEA--FLLSTEERKQVLEIVAEEAKGKIKLIAQVGSVNTAEAQELAKYATELGYDAIS 104 (294)
T ss_pred HHCCCCEEEECCCCCCH--HHCCHHHHHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHHHHHHHCCCCEEE
T ss_conf 87799899979513164--34899999999999999818973276347888889999999999975998899
No 95
>cd01423 MGS_CPS_I_III Methylglyoxal synthase-like domain found in pyr1 and URA1-like carbamoyl phosphate synthetases (CPS), including ammonia-dependent CPS Type I, and glutamine-dependent CPS Type III. These are multidomain proteins, in which MGS is the C-terminal domain.
Probab=69.12 E-value=5.7 Score=18.83 Aligned_cols=39 Identities=21% Similarity=0.119 Sum_probs=30.8
Q ss_pred CEEEEECCCCCCCCCHHHH--HHHCCCCEECCHHHHHHHHH
Q ss_conf 6899605430121607888--98629977929999999999
Q gi|254780869|r 69 MAIFITHAHEDHYGALHDL--WSFLHVPVYASPFAIGLLEA 107 (559)
Q Consensus 69 ~~i~iTH~H~DHiGalp~l--~~~~~~pIY~s~~t~~li~~ 107 (559)
++||+|=+-.|.--++|.. +..+++++|||+.|+.+++.
T Consensus 1 KnVliSv~d~dK~~~l~~a~~l~~lGf~l~AT~GTa~~l~~ 41 (116)
T cd01423 1 KGILISIGSYSKPELLPTAQKLSKLGYKLYATEGTADFLLE 41 (116)
T ss_pred CEEEEEEEHHHHHHHHHHHHHHHHCCCEEEEEHHHHHHHHH
T ss_conf 92999940203899999999999879999984189999998
No 96
>COG0770 MurF UDP-N-acetylmuramyl pentapeptide synthase [Cell envelope biogenesis, outer membrane]
Probab=68.44 E-value=8 Score=17.77 Aligned_cols=18 Identities=6% Similarity=0.014 Sum_probs=8.0
Q ss_pred CCCCHHHHHHHHHHCCCC
Q ss_conf 788978999999754953
Q gi|254780869|r 369 GHPYPNDLKRMYQWIRPQ 386 (559)
Q Consensus 369 GHa~~edl~~li~~ikPk 386 (559)
|--+.+.+.++.+.++..
T Consensus 368 G~~s~~~H~~v~~~~~~~ 385 (451)
T COG0770 368 GEESEELHEEVGEYAVEA 385 (451)
T ss_pred CCCHHHHHHHHHHHHHHC
T ss_conf 854899999999999856
No 97
>PRK10294 6-phosphofructokinase 2; Provisional
Probab=68.42 E-value=8 Score=17.77 Aligned_cols=56 Identities=16% Similarity=0.329 Sum_probs=35.8
Q ss_pred CCCCCCCHHHHHHHHHHHHHHCCCCEEEEECH----HHHHHHHHHHHHHHHHCCEEEEEC
Q ss_conf 88877778799999999986279839999414----778999999999987188699844
Q gi|254780869|r 203 REGTCISEKGIKKNIYDIMKNAKGCVLVTTFS----SSVSRIRSIIDIAEQIGRKIVLLG 258 (559)
Q Consensus 203 ~~~~~~sE~~v~~~i~~~~~~~~grViv~~fa----sni~Ri~~i~~~a~~~~R~v~i~G 258 (559)
.+|...+|.++.+-.+.+..-.++.+++.+-+ -+.+.+..+++.|++.|.++++..
T Consensus 108 ~~G~~~~~~~~~~l~~~~~~~~~~~~lvi~gslP~gv~~~~~~~li~~a~~~g~~vilD~ 167 (309)
T PRK10294 108 MPGAALNEDEFRQLEEQVLEIESGAILVISGSLPPGVKLEKLTQLISAAQKQGIRCIIDS 167 (309)
T ss_pred CCCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCHHHHHHHHHHHHHCCCEEEECC
T ss_conf 779999999999999999845669889996788999999999999999997699899569
No 98
>TIGR03540 DapC_direct LL-diaminopimelate aminotransferase. This clade of the pfam00155 superfamily of aminotransferases includes several which are adjacent to elements of the lysine biosynthesis via diaminopimelate pathway (GenProp0125). Every member of this clade is from a genome which possesses most of the lysine biosynthesis pathway but lacks any of the known aminotransferases, succinylases, desuccinylases, acetylases or deacetylases typical of the acylated versions of this pathway nor do they have the direct, NADPH-dependent enzyme (ddh). Although there is no experimental characterization of any of the sequences in this clade, a direct pathway is known in plants and Chlamydia, so it seems quite reasonable that these enzymes catalyze the same transformation.
Probab=68.33 E-value=8 Score=17.76 Aligned_cols=30 Identities=3% Similarity=0.284 Sum_probs=17.8
Q ss_pred CCEEEEECHHH-------HHHHHHHHHHHHHHCCEEE
Q ss_conf 83999941477-------8999999999987188699
Q gi|254780869|r 226 GCVLVTTFSSS-------VSRIRSIIDIAEQIGRKIV 255 (559)
Q Consensus 226 grViv~~fasn-------i~Ri~~i~~~a~~~~R~v~ 255 (559)
.++++-|+.+| -++++.++++|++++--|+
T Consensus 165 ~k~iil~~P~NPTG~v~s~~~l~~i~~la~~~~i~iI 201 (383)
T TIGR03540 165 AKLMFINYPNNPTGAVAPLKFFKELVEFAKEYNIIVC 201 (383)
T ss_pred CEEEEECCCCCCCCCCCCCHHHHCCCCCCCCCCCEEE
T ss_conf 7499989998970701210222201001245540576
No 99
>KOG0081 consensus
Probab=68.11 E-value=3.2 Score=20.59 Aligned_cols=39 Identities=28% Similarity=0.551 Sum_probs=26.2
Q ss_pred EEEEECCCCCCCCCEEEEEEECCCCCCEEEEEECCCCCCC
Q ss_conf 9999406868346606999951777864899977676788
Q gi|254780869|r 6 LVFLPLGGVGEIGMNMALYGYGSPSSRKWIMIDCGVSFPK 45 (559)
Q Consensus 6 i~~~~lGG~~eiG~N~~~~~~~~~~~~~~iiiD~G~~fp~ 45 (559)
|+|++||-+| +|+.|.+|.|....-+.-+|--.|+.|.+
T Consensus 10 ikfLaLGDSG-VGKTs~Ly~YTD~~F~~qFIsTVGIDFre 48 (219)
T KOG0081 10 IKFLALGDSG-VGKTSFLYQYTDGKFNTQFISTVGIDFRE 48 (219)
T ss_pred HHHHHHCCCC-CCCEEEEEEECCCCCCCEEEEEEECCCCC
T ss_conf 8887404677-77347898732785334357774013440
No 100
>TIGR02379 ECA_wecE TDP-4-keto-6-deoxy-D-glucose transaminase; InterPro: IPR012749 This family consists of TDP-4-keto-6-deoxy-D-glucose transaminases, the WecE (formerly RffA) protein of enterobacterial common antigen (ECA) biosynthesis, from enterobacteria. It also includes closely matching sequence from species not expected to make ECA, but which contain other genes for the biosynthesis of TDP-4-keto-6-deoxy-D-Glc, an intermediate in the biosynthesis of other compounds as well and the substrate of WecA. This family belongs to the DegT/DnrJ/EryC1/StrS aminotransferase family..
Probab=67.87 E-value=8.2 Score=17.69 Aligned_cols=14 Identities=29% Similarity=0.484 Sum_probs=5.8
Q ss_pred CCCHHHHHHCCCCC
Q ss_conf 38988998608788
Q gi|254780869|r 177 VTDKDSLCAIGNEG 190 (559)
Q Consensus 177 ~~d~~~l~~~~~~g 190 (559)
.+|...+..++++-
T Consensus 132 aC~M~tIM~la~k~ 145 (376)
T TIGR02379 132 ACDMDTIMALANKH 145 (376)
T ss_pred ECCHHHHHHHHHHC
T ss_conf 10547898776434
No 101
>pfam06616 BsuBI_PstI_RE BsuBI/PstI restriction endonuclease C-terminus. This family represents the C-terminus of bacterial enzymes similar to type II restriction endonucleases BsuBI and PstI (EC:3.1.21.4). The enzymes of the BsuBI restriction/modification (R/M) system recognize the target sequence 5'CTGCAG and are functionally identical with those of the PstI R/M system.
Probab=67.43 E-value=8.4 Score=17.63 Aligned_cols=92 Identities=17% Similarity=0.168 Sum_probs=42.1
Q ss_pred CEEEEEEECCCCCCCC-----CEEEEEECCCEEEECCCCEECCCCCCCCCCCHHHHHHCCCC------CC----------
Q ss_conf 4899998556777765-----35679876817998334024677665423898899860878------82----------
Q gi|254780869|r 133 AFSIESVRVNHSIPET-----MALVIRSPVGNIVHTGDWKLDDDAILGDVTDKDSLCAIGNE------GI---------- 191 (559)
Q Consensus 133 ~~~v~~~~~~Hsip~a-----~~~~I~t~~g~i~ytGDfk~d~~p~~g~~~d~~~l~~~~~~------gv---------- 191 (559)
+-++++=|-.||...- ++=. -+|++.++|-||-. + -. -..|.+.++++|=. =.
T Consensus 153 G~~~~lsPG~hn~L~KaIIEeFaPr-F~pg~~vLyigDTg--~--K~-~~~d~ell~~LG~~i~~h~klPDvVl~d~~~~ 226 (306)
T pfam06616 153 GKTITLSPGPSSELIKAVIEEFAPR-FLPGPAVLYLGDTG--N--KV-VYFDDELLKELGLTIDSHGKLPDIVLYDLGKK 226 (306)
T ss_pred CCEEEECCCCCHHHHHHHHHHHHHH-HCCCCEEEEEECCC--C--EE-EECCHHHHHHCCCCCCCCCCCCCEEEEECCCC
T ss_conf 9879868886138899999986354-07996499970689--8--24-66159999975997565568997899846899
Q ss_pred EEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHC-CCCEEEEECH
Q ss_conf 999963564578887777879999999998627-9839999414
Q gi|254780869|r 192 LALMCDSTNAMREGTCISEKGIKKNIYDIMKNA-KGCVLVTTFS 234 (559)
Q Consensus 192 ~~Li~esT~~~~~~~~~sE~~v~~~i~~~~~~~-~grViv~~fa 234 (559)
-++++|+-. +.|+--.+. ...+.++++++ .|.|+|+||-
T Consensus 227 wL~liEaVt--S~GPv~~~R--~~eL~~l~~~~~~~lvfVTAF~ 266 (306)
T pfam06616 227 WLVLVEVVA--SDGPVDGKR--HEELAKLFADAPAGLVFVTAFP 266 (306)
T ss_pred EEEEEEEEC--CCCCCCHHH--HHHHHHHHHCCCCCEEEEEECC
T ss_conf 699999973--779989899--9999999853888869999558
No 102
>cd01742 GATase1_GMP_Synthase Type 1 glutamine amidotransferase (GATase1) domain found in GMP synthetase. Type 1 glutamine amidotransferase (GATase1) domain found in GMP synthetase. GMP synthetase is a glutamine amidotransferase from the de novo purine biosynthetic pathway. Glutamine amidotransferase (GATase) activity catalyse the transfer of ammonia from the amide side chain of glutamine to an acceptor substrate. GMP synthetase catalyses the amination of the nucleotide precursor xanthosine 5'-monophospahte to form GMP. GMP synthetase belongs to the triad family of amidotransferases having a conserved Cys-His-Glu catalytic triad in the glutaminase active site.
Probab=66.77 E-value=8.6 Score=17.54 Aligned_cols=75 Identities=17% Similarity=0.233 Sum_probs=44.7
Q ss_pred EEEEECCCCCCCC-----CCCCEEE-ECCC-HHHHHHHHHCCCEEEEECCCC----CCCCCHHHHHHHCCCCEECCHHHH
Q ss_conf 8999776767888-----7675028-7079-579876641246899605430----121607888986299779299999
Q gi|254780869|r 34 WIMIDCGVSFPKD-----DLPGVDL-VFPD-ITFIMKERKNLMAIFITHAHE----DHYGALHDLWSFLHVPVYASPFAI 102 (559)
Q Consensus 34 ~iiiD~G~~fp~~-----~~~gid~-iiPd-~~~l~~~~~~i~~i~iTH~H~----DHiGalp~l~~~~~~pIY~s~~t~ 102 (559)
+++||+|.+|-.+ ...|++. ++|+ .+.-+....+.+||+++-+-. .....+...+-+.++||.+-=+..
T Consensus 1 I~iiD~g~~~~~si~~~l~~~G~~~~vv~~~~~~~~~~~~~~dgvils~GP~~~~~~~~~~~~~~i~~~~~PilGIClG~ 80 (181)
T cd01742 1 ILILDFGSQYTHLIARRVRELGVYSEILPNTTPLEEIKLKNPKGIILSGGPSSVYEEDAPRVDPEIFELGVPVLGICYGM 80 (181)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHCCCCEEEECCCCCCCCCCCCCHHHHHHHHCCCCEEEEHHHH
T ss_conf 79999986389999999997799499996999989997349898998999998555798333099984799999985999
Q ss_pred HHHHHH
Q ss_conf 999999
Q gi|254780869|r 103 GLLEAK 108 (559)
Q Consensus 103 ~li~~~ 108 (559)
.+|-..
T Consensus 81 Qll~~a 86 (181)
T cd01742 81 QLIAKA 86 (181)
T ss_pred HHHHHH
T ss_conf 999987
No 103
>PRK12838 carbamoyl phosphate synthase small subunit; Reviewed
Probab=65.98 E-value=8.9 Score=17.44 Aligned_cols=20 Identities=30% Similarity=0.380 Sum_probs=11.5
Q ss_pred EEECCCHHHHHHHHHHHHHCCCC
Q ss_conf 97045779999999878744786
Q gi|254780869|r 389 VAIHGEPLHLVAHKELALQEGIA 411 (559)
Q Consensus 389 IPvHGe~rhl~~h~~la~~~gv~ 411 (559)
+|+-|= ..-|.-||.+.|.+
T Consensus 238 ~PifGI---CLGHQllalA~Gak 257 (356)
T PRK12838 238 YPILGI---CLGHQLIALALGAE 257 (356)
T ss_pred CCEEEE---CHHHHHHHHHHCCE
T ss_conf 888997---48899999970974
No 104
>PRK07535 methyltetrahydrofolate:corrinoid/iron-sulfur protein methyltransferase; Validated
Probab=65.29 E-value=9.2 Score=17.35 Aligned_cols=43 Identities=23% Similarity=0.373 Sum_probs=34.8
Q ss_pred HHHHHHHHHCCCCEEEEECHHHHHHHHHHHHHHHHHCCEEEEE
Q ss_conf 9999998627983999941477899999999998718869984
Q gi|254780869|r 215 KNIYDIMKNAKGCVLVTTFSSSVSRIRSIIDIAEQIGRKIVLL 257 (559)
Q Consensus 215 ~~i~~~~~~~~grViv~~fasni~Ri~~i~~~a~~~~R~v~i~ 257 (559)
+.++..++..+||.++.+.+-.=+|+..++.+|+++|=.|+..
T Consensus 80 ~aiEaaLk~~~Gr~iINSis~e~er~~~i~pLakkyga~vI~L 122 (268)
T PRK07535 80 EAIEAGLKVAKGRPLINSVSAEEERLEAVLPLVKKYNAPVVAL 122 (268)
T ss_pred HHHHHHHHHCCCCCEEEEECCCHHHHHHHHHHHHHHCCEEEEE
T ss_conf 9999999977999726600388056999999999849979999
No 105
>KOG3798 consensus
Probab=64.22 E-value=9.6 Score=17.21 Aligned_cols=123 Identities=15% Similarity=0.134 Sum_probs=61.8
Q ss_pred CCCEEEEECCCCCCCCCHHHHH-HHCCCCEECCHHHHHHHHHHHHHCCCCCCCCEEEECCCCEEEE---C-CEEEEEEEC
Q ss_conf 2468996054301216078889-8629977929999999999998548865562255175555776---3-489999855
Q gi|254780869|r 67 NLMAIFITHAHEDHYGALHDLW-SFLHVPVYASPFAIGLLEAKRVYERVSKKIPCISFQAGDKVDV---G-AFSIESVRV 141 (559)
Q Consensus 67 ~i~~i~iTH~H~DHiGalp~l~-~~~~~pIY~s~~t~~li~~~~~~~~~~~~~~~~~i~~~~~~~~---g-~~~v~~~~~ 141 (559)
+++-++.+|+|.||.-+-..+. ...+.|++-.+.. ++.-...++- .. ..++..++..++ + .++|-+.|+
T Consensus 132 ~~d~~~vsh~h~dhld~~~~~~~~~~~~~~wfvp~g---~k~~m~~~gc--~~-v~el~wwe~~~~vkn~~~~ti~~tPa 205 (343)
T KOG3798 132 DLDFAVVSHDHYDHLDADAVKKITDRNPQIWFVPLG---MKKWMEGDGS--ST-VTELNWGESSEFVKNGKTYTIWCLPA 205 (343)
T ss_pred CCCEECCCCCCCCCCCHHHHHHHHCCCCCCEECHHH---HHHEECCCCC--CC-EEEEECCHHHCEECCCCEEEEEECCH
T ss_conf 966303436652323668887650568521030322---2012437887--70-36750100220511895799997532
Q ss_pred CCCCCCC---------CEEEEEECCCEEEECCCCEECCCCCCCCCC-CHHHHHH-CCCCCCEEEEECCCCCCCC
Q ss_conf 6777765---------356798768179983340246776654238-9889986-0878829999635645788
Q gi|254780869|r 142 NHSIPET---------MALVIRSPVGNIVHTGDWKLDDDAILGDVT-DKDSLCA-IGNEGILALMCDSTNAMRE 204 (559)
Q Consensus 142 ~Hsip~a---------~~~~I~t~~g~i~ytGDfk~d~~p~~g~~~-d~~~l~~-~~~~gv~~Li~esT~~~~~ 204 (559)
.|+---+ .++++-.+.-+.+|.|| .|+-. .+.++.+ +|+- =+|+|-=+.|.-+.
T Consensus 206 qHw~~R~L~D~Nk~LW~sw~v~g~~nrfffaGD--------TGyc~~~F~~IgerfGpf-dLAaiPiGaYePrW 270 (343)
T KOG3798 206 QHWGQRGLFDRNKRLWSSWAVIGENNRFFFAGD--------TGYCDGEFKKIGERFGPF-DLAAIPIGAYEPRW 270 (343)
T ss_pred HHHCCCCCCCCCCCEEEEEEEECCCCEEEECCC--------CCCCHHHHHHHHHHCCCC-CEEECCCCCCCCHH
T ss_conf 431245433478621775578637845874687--------776627999998764876-33302244568343
No 106
>TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein; InterPro: IPR011918 This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins ..
Probab=64.10 E-value=6.7 Score=18.32 Aligned_cols=66 Identities=15% Similarity=0.266 Sum_probs=29.8
Q ss_pred CEEEECCEEEE-EEECCCCCCCCCEEEEEECCCEEEECCCCEECCCCCCCCCCCHHHHHHC--CCCCCEEEEECCCCC
Q ss_conf 55776348999-9855677776535679876817998334024677665423898899860--878829999635645
Q gi|254780869|r 127 DKVDVGAFSIE-SVRVNHSIPETMALVIRSPVGNIVHTGDWKLDDDAILGDVTDKDSLCAI--GNEGILALMCDSTNA 201 (559)
Q Consensus 127 ~~~~~g~~~v~-~~~~~Hsip~a~~~~I~t~~g~i~ytGDfk~d~~p~~g~~~d~~~l~~~--~~~gv~~Li~esT~~ 201 (559)
-++.|....+. |-+-++...+..-+.|+ |+.++-.-| +++ -|+.|=++.|-++ +.+|--. .||++.
T Consensus 336 Gei~F~~V~F~YP~RPd~~aL~~~~L~v~-PGEtvAlVG-----PSG-AGKSTlf~LLLRFYDP~~G~il--LDGvd~ 404 (576)
T TIGR02204 336 GEIEFEQVNFAYPARPDQPALDGLNLTVR-PGETVALVG-----PSG-AGKSTLFQLLLRFYDPQSGRIL--LDGVDI 404 (576)
T ss_pred EEEEECCCCCCCCCCCCCHHHCCCCCEEC-CCCEEEEEC-----CCC-CHHHHHHHHHHHCCCCCCCEEE--ECCCCH
T ss_conf 02776122325879888042325772562-776588766-----887-6279999999860488876577--466414
No 107
>PRK09148 aminotransferase; Validated
Probab=63.94 E-value=9.7 Score=17.18 Aligned_cols=26 Identities=12% Similarity=0.309 Sum_probs=16.0
Q ss_pred CEEEEECHHH-------HHHHHHHHHHHHHHCC
Q ss_conf 3999941477-------8999999999987188
Q gi|254780869|r 227 CVLVTTFSSS-------VSRIRSIIDIAEQIGR 252 (559)
Q Consensus 227 rViv~~fasn-------i~Ri~~i~~~a~~~~R 252 (559)
+.++-|+.+| -+.++.++++|++.+-
T Consensus 168 k~iil~~P~NPTG~v~~~~~l~~l~~~a~~~~i 200 (406)
T PRK09148 168 IALIVNYPSNPTAYVADLDFYKDLVAFAKKHDI 200 (406)
T ss_pred EEEEECCCCCCCCCCCCHHHHHHHHHHHHCCEE
T ss_conf 499977899988876899999999987540548
No 108
>TIGR02093 P_ylase glycogen/starch/alpha-glucan phosphorylases; InterPro: IPR011833 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described . This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site . The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Proteins in this entry are glycosyltransferases with phosphorylase activities. Members use phosphate to break alpha 1,4 linkages between pairs of glucose residues at the end of long glucose polymers, releasing alpha-D-glucose 1-phosphate. The nomenclature convention is to preface the name according to the natural substrate, as in glycogen phosphorylase, starch phosphorylase, maltodextrin phosphorylase, etc. The main role of glycogen phosphorylase (GPase) is to provide phosphorylated glucose molecules (G-1-P) . GPase is a highly regulated allosteric enzyme. The net effect of the regulatory site allows the enzyme to operate at a variety of rates; the enzyme is not simply regulated as "on" or "off", but rather it can be thought of being set to operate at an ideal rate based on changing conditions at in the cell. The most important allosteric effector is the phosphate molecule covalently attached to Ser14. This switches GPase from the b (inactive) state to the a (active) state. Upon phosphorylation, GPase attains about 800f its Vmax. When the enzyme is not phosphorylated, GPase activity is practically non-existent at low AMP levels . There is some apparent controversy as to the structure of GPase. All sources agree that the enzyme is multimeric, but there is apparent controversy as to the enzyme being a tetramer or a dimer. Apparently, GPase (in the a form) forms tetramers in the crystal form. The consensus seems to be that 'regardless of the a or b form, GPase functions as a dimer in vivo . The GPase monomer is best described as consisting of two domains, an N-terminal domain and a C-terminal domain . The C-terminal domain is often referred to as the catalytic domain. It consists of a beta-sheet core surrounded by layers of helical segments . The vitamin cofactor pyridoxal phosphate (PLP) is covalently attached to the amino acid backbone. The N-terminal domain also consists of a central beta-sheet core and is surrounded by layers of helical segments. The N-terminal domain contains different allosteric effector sites to regulate the enzyme. Bacterial phosphorylases follow the same catalytic mechanisms as their plant and animal counterparts, but differ considerably in terms of their substrate specificity and regulation. The catalytic domains are highly conserved while the regulatory sites are only poorly conserved. For maltodextrin phosphorylase from Escherichia coli the physiological role of the enzyme in the utilisation of maltidextrins is known in detail; that of all the other bacterial phosphorylases is still unclear. Roles in regulatuon of endogenous glycogen metabolism in periods of starvation, and sporulation, stress response or quick adaptation to changing environments are possible .; GO: 0004645 phosphorylase activity, 0030170 pyridoxal phosphate binding, 0005975 carbohydrate metabolic process.
Probab=63.93 E-value=9.7 Score=17.18 Aligned_cols=132 Identities=17% Similarity=0.326 Sum_probs=71.2
Q ss_pred HHHHHHCCCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECHHHHHHHHHHHHHHHHHCCEEEEECH
Q ss_conf 88998608788299996356457888777787999999999862798399994147789999999999871886998448
Q gi|254780869|r 180 KDSLCAIGNEGILALMCDSTNAMREGTCISEKGIKKNIYDIMKNAKGCVLVTTFSSSVSRIRSIIDIAEQIGRKIVLLGS 259 (559)
Q Consensus 180 ~~~l~~~~~~gv~~Li~esT~~~~~~~~~sE~~v~~~i~~~~~~~~grViv~~fasni~Ri~~i~~~a~~~~R~v~i~Gr 259 (559)
..||-++++.+.-+||.|.--++.. .++-+..+.++..- +--.| +.+..++-..-|+
T Consensus 474 PRRWl~~aNP~LS~l~~e~iGt~~W---~~~l~~L~~L~~ya---~D~~f-------~~~~~~vK~~NK~---------- 530 (822)
T TIGR02093 474 PRRWLALANPGLSALLTETIGTDEW---LTDLDLLKKLEPYA---DDSEF-------LEKFAQVKQANKQ---------- 530 (822)
T ss_pred HHHHHHHHCHHHHHHHHHHHCCCHH---HCCHHHHHHHHHCC---CCHHH-------HHHHHHHHHHHHH----------
T ss_conf 6789975181368999876246722---21479885111004---89899-------9999999999999----------
Q ss_pred HHHHHHHHHHHCCC-CCCCCCC-CCHHHHCCCCCCCEEEEEECCCCCHHHHH------HHHCCCCCCCCC-CCCCCEEEE
Q ss_conf 69999998874287-6776542-26566223880208999966963268898------852027776530-268966999
Q gi|254780869|r 260 SLKRVVSVAIDVGI-IKKDQLF-LSDESFGLYPREQLIVIATGSQGEPRSAL------AQLSRGEMRNVK-LAEKDTVIF 330 (559)
Q Consensus 260 s~~~~~~~a~~~g~-l~~~~~~-i~~~~~~~~p~~~~~ii~TGsqge~~a~l------~ria~~~~~~i~-l~~~D~vI~ 330 (559)
.+.. .+.+.+|. ++|..+| +..+-+-.|+|+ .+.+| .||-++ +.-. +-|- ||||
T Consensus 531 ~LA~--yi~~~~GV~~dP~siFDVQvKRlHEYKRQ------------LLN~L~vi~lY~rIK~~--~~~~r~vPR-tviF 593 (822)
T TIGR02093 531 RLAA--YIKEETGVEVDPNSIFDVQVKRLHEYKRQ------------LLNVLHVIYLYNRIKED--PSKDRIVPR-TVIF 593 (822)
T ss_pred HHHH--HHHHHCCCEECCCCCCCCCHHHHHHHHHH------------HHHHHHHHHHHHHHHCC--CCCCCCCCE-EEEE
T ss_conf 9999--99977792768665532112365677899------------98999999989998458--788820344-7771
Q ss_pred EEECCCCH--HHHHHHHHHHHHC
Q ss_conf 96158861--7789999976510
Q gi|254780869|r 331 SSRAIPGN--EVAIGHIKNRLVE 351 (559)
Q Consensus 331 ss~~ipGn--E~~~~~~~n~l~~ 351 (559)
..+.-||+ -|.+-+++|.+++
T Consensus 594 GgKAAPGY~~AK~IIKLIN~VA~ 616 (822)
T TIGR02093 594 GGKAAPGYHMAKLIIKLINSVAE 616 (822)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHH
T ss_conf 46133557888899999987899
No 109
>TIGR00216 ispH_lytB 4-hydroxy-3-methylbut-2-enyl diphosphate reductase; InterPro: IPR003451 Terpenes are among the largest groups of natural products and include compounds such as vitamins, cholesterol and carotenoids. The biosynthesis of all terpenoids begins with one or both of the two C5 precursors of the pathway: isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). In animals, fungi, and certain bacteria, the synthesis of IPP and DMAPP occurs via the well-known mevalonate pathway, however, a second, nonmevalonate terpenoid pathway has been identified in many eubacteria, algae and the chloroplasts of higher plants . LytB(IspH) catalyses the conversion of 1-hydroy-2-methyl-2-(E)-butenyl 4-diphosphate into IPP and DMAPP in this second pathway The enzyme appears to be responsible for a branch-step in the nonmevalonate pathway, in that IPP and DMAPP are produced in parallel from a single precursor although the exact mechanism of this is not currently fully understood . Escherichia coli LytB protein had been found to regulate the activity of RelA (guanosine 3',5'-bispyrophosphate synthetase I), which in turn controls the level of a regulatory metabolite. It is involved in penicillin tolerance and the stringent response .; GO: 0019288 isopentenyl diphosphate biosynthetic process mevalonate-independent pathway.
Probab=63.31 E-value=9.9 Score=17.10 Aligned_cols=42 Identities=17% Similarity=0.379 Sum_probs=20.0
Q ss_pred HHHHHHHHHCCCCE-EE--EECHHHHHHHHHHHHHHHHHCCEEEEECH
Q ss_conf 99999986279839-99--94147789999999999871886998448
Q gi|254780869|r 215 KNIYDIMKNAKGCV-LV--TTFSSSVSRIRSIIDIAEQIGRKIVLLGS 259 (559)
Q Consensus 215 ~~i~~~~~~~~grV-iv--~~fasni~Ri~~i~~~a~~~~R~v~i~Gr 259 (559)
++-.+..++ +|.+ ++ ||=- +-.+++.++-..+-|++|++.|.
T Consensus 97 ~~v~e~l~~-kgl~t~~DATCP~--Vtk~h~~~~~~~~~Gy~vIl~G~ 141 (354)
T TIGR00216 97 PEVREELEK-KGLETVIDATCPL--VTKVHKAVKKYAKEGYHVILIGK 141 (354)
T ss_pred HHHHHHHHH-CCCEEEEECCCCC--CHHHHHHHHHHHHCCCEEEEEEC
T ss_conf 889999985-6983897278982--05899999999745988999952
No 110
>PRK13391 acyl-CoA synthetase; Provisional
Probab=63.10 E-value=10 Score=17.07 Aligned_cols=50 Identities=14% Similarity=0.088 Sum_probs=28.3
Q ss_pred CCCEEEEECCC-CEEEEEEEECCCEEECCCCEECCCCHHHHHHHHHHHCCEEEEEE
Q ss_conf 03227897389-70450123213202123310025505889999740387499999
Q gi|254780869|r 417 RNGKMLRLFPD-PIEIIDEVVHGLFLKDGFLIGKFADLGIAKRRQLSFVGHLSVNV 471 (559)
Q Consensus 417 ~NGd~i~l~~~-~~~i~~~v~~g~~~vDG~~i~~~~~~vl~eR~~Ls~~GiV~V~v 471 (559)
.-||+..++.+ ...+.++.+ .-+-+.|..+... + =|+..+...++.-+.+
T Consensus 385 ~TGDlg~~d~dG~l~~~gR~~-d~i~~~G~~V~p~-e---IE~~l~~~p~V~~aav 435 (514)
T PRK13391 385 TVGDVGYVDEDGYLYLTDRAA-FMIISGGVNIYPQ-E---AENLLITHPKVADAAV 435 (514)
T ss_pred CCCCEEEECCCCCEEECCCCC-CEEEECCEEECHH-H---HHHHHHHCCCCCEEEE
T ss_conf 249806998999889841550-8799899999899-9---9999974998266999
No 111
>PRK05234 mgsA methylglyoxal synthase; Validated
Probab=62.46 E-value=3.2 Score=20.60 Aligned_cols=30 Identities=20% Similarity=0.285 Sum_probs=10.4
Q ss_pred CCCCCCCCCHHHHHHHCCCCEECCHHHHHH
Q ss_conf 543012160788898629977929999999
Q gi|254780869|r 75 HAHEDHYGALHDLWSFLHVPVYASPFAIGL 104 (559)
Q Consensus 75 H~H~DHiGalp~l~~~~~~pIY~s~~t~~l 104 (559)
|+|+--+.||--+..-+++|+-+...|+++
T Consensus 90 ~phd~Dv~aLlRlc~v~nIP~AtN~aTAe~ 119 (146)
T PRK05234 90 QPHDPDVKALLRLADVWNIPVATNRATADF 119 (146)
T ss_pred CCCCCHHHHHHHHHHHHCCCCCCCHHHHHH
T ss_conf 777520999999998728764268978999
No 112
>PRK10637 cysG siroheme synthase; Provisional
Probab=61.63 E-value=11 Score=16.89 Aligned_cols=138 Identities=20% Similarity=0.209 Sum_probs=73.5
Q ss_pred CCCHHHHCCCCCCCEEEEEE-------CCCCCHHHHHHHHCCCCCCCCCCCCCCEEEEEE---------------ECCCC
Q ss_conf 22656622388020899996-------696326889885202777653026896699996---------------15886
Q gi|254780869|r 280 FLSDESFGLYPREQLIVIAT-------GSQGEPRSALAQLSRGEMRNVKLAEKDTVIFSS---------------RAIPG 337 (559)
Q Consensus 280 ~i~~~~~~~~p~~~~~ii~T-------Gsqge~~a~l~ria~~~~~~i~l~~~D~vI~ss---------------~~ipG 337 (559)
+++..-+...+++--.+.+. -.|.|....|-+.|+.-.+-++|+.||-.||.. ..+||
T Consensus 250 lv~~~il~~~~~~ae~i~vgK~~g~~~~~q~~i~~llv~~a~~G~~VvRLk~GDP~ifGr~~EE~~~l~~~Gi~~eVvPG 329 (457)
T PRK10637 250 LVSDDIMNLVRRDADRVFVGKRAGYHCVPQEEINQILLREAQKGKRVVRLKGGDPFIFGRGGEELETLCNAGIPFSVVPG 329 (457)
T ss_pred CCCHHHHHHCCCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCHHHHHHHHHHCCCCEEEECC
T ss_conf 79989996447898899960678888878999999999998589979998489986434389999999978998899899
Q ss_pred HHHHHHHHHHHHHCCCEEEEECCCC-CCEECCCCCCHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHCCCC-C--E
Q ss_conf 1778999997651031134303566-6413157889789999997549539997045779999999878744786-3--1
Q gi|254780869|r 338 NEVAIGHIKNRLVEQGVRVIAEDAE-CPVHVSGHPYPNDLKRMYQWIRPQVLVAIHGEPLHLVAHKELALQEGIA-C--V 413 (559)
Q Consensus 338 nE~~~~~~~n~l~~~g~~vi~~~~~-~~iH~SGHa~~edl~~li~~ikPk~~IPvHGe~rhl~~h~~la~~~gv~-~--i 413 (559)
--.+.+- -...|..+.+-+.. .-.-++||.-...-..+-.+.++..-+-+.---+.+..-.+-..+.|.+ . +
T Consensus 330 Itsa~a~----aa~agipLT~r~~a~sv~~~Tgh~~~~~~~~w~~La~~~~TlViyMg~~~l~~i~~~L~~~G~~~~tPv 405 (457)
T PRK10637 330 ITAASGC----SAYSGIPLTHRDYAQSVRLVTGHLKTGGELDWENLAAEKQTLVFYMGLNQAATIQQKLIEHGMPAEMPV 405 (457)
T ss_pred CCHHHHH----HHHCCCCCCCCCCCCEEEEEECCCCCCCCCCHHHHCCCCCEEEEECCHHHHHHHHHHHHHCCCCCCCEE
T ss_conf 7677788----997398766688621799994767888766999960899859999988799999999995798999808
Q ss_pred EEECCCEE
Q ss_conf 55003227
Q gi|254780869|r 414 PPVRNGKM 421 (559)
Q Consensus 414 ~l~~NGd~ 421 (559)
.+++||..
T Consensus 406 Avv~~~t~ 413 (457)
T PRK10637 406 ALVENGTS 413 (457)
T ss_pred EEEECCCC
T ss_conf 99984897
No 113
>PRK05957 aspartate aminotransferase; Provisional
Probab=61.45 E-value=11 Score=16.87 Aligned_cols=19 Identities=16% Similarity=0.244 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHCCEEE
Q ss_conf 8999999999987188699
Q gi|254780869|r 237 VSRIRSIIDIAEQIGRKIV 255 (559)
Q Consensus 237 i~Ri~~i~~~a~~~~R~v~ 255 (559)
.++++.++++|++++-.|+
T Consensus 179 ~~~l~~l~~la~~~~~~ii 197 (389)
T PRK05957 179 EALLRAVNQICAEHGIYHI 197 (389)
T ss_pred HHHHHHHHHHHCCCCCEEE
T ss_conf 7789999987606781899
No 114
>PRK05942 aspartate aminotransferase; Provisional
Probab=61.34 E-value=11 Score=16.86 Aligned_cols=29 Identities=14% Similarity=0.187 Sum_probs=17.5
Q ss_pred CCEEEEECHHH-------HHHHHHHHHHHHHHCCEE
Q ss_conf 83999941477-------899999999998718869
Q gi|254780869|r 226 GCVLVTTFSSS-------VSRIRSIIDIAEQIGRKI 254 (559)
Q Consensus 226 grViv~~fasn-------i~Ri~~i~~~a~~~~R~v 254 (559)
.++++-|+.+| -+.++.|+++|++.+--|
T Consensus 171 tk~iil~~P~NPTG~v~~~e~l~~i~~~a~~~~i~v 206 (394)
T PRK05942 171 AKILYFNYPSNPTTATAPREFFEEIVAFARKYEILL 206 (394)
T ss_pred CCEEEEECCCCCCCHHCCHHHHHHHHHHHHCCCCEE
T ss_conf 708999389881012201999999999885178679
No 115
>PRK07681 aspartate aminotransferase; Provisional
Probab=61.14 E-value=11 Score=16.84 Aligned_cols=29 Identities=14% Similarity=0.257 Sum_probs=19.2
Q ss_pred CCCEEEEECHHH-------HHHHHHHHHHHHHHCCE
Q ss_conf 983999941477-------89999999999871886
Q gi|254780869|r 225 KGCVLVTTFSSS-------VSRIRSIIDIAEQIGRK 253 (559)
Q Consensus 225 ~grViv~~fasn-------i~Ri~~i~~~a~~~~R~ 253 (559)
+-+.++-|+.+| -+.++.++++|+++|--
T Consensus 166 ~tk~iil~~P~NPTG~v~s~e~l~~l~~la~~~~i~ 201 (399)
T PRK07681 166 KAKMMILNFPGNPVPAMAHEDFFKEVIAFAKKHNII 201 (399)
T ss_pred CCEEEEECCCCCCCCCCCCHHHHHHHHHHHHHCCCE
T ss_conf 555999769989888778999999999985313633
No 116
>PRK08068 transaminase; Reviewed
Probab=60.13 E-value=11 Score=16.72 Aligned_cols=19 Identities=11% Similarity=0.130 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHCCEEE
Q ss_conf 8999999999987188699
Q gi|254780869|r 237 VSRIRSIIDIAEQIGRKIV 255 (559)
Q Consensus 237 i~Ri~~i~~~a~~~~R~v~ 255 (559)
-+.++.++++|++.+--|+
T Consensus 186 ~~~l~~l~~la~~~~i~vi 204 (389)
T PRK08068 186 KAFFEETVAFAKKHNIGVV 204 (389)
T ss_pred HHHHHHHHHHHHCCCEEEE
T ss_conf 9999999998710777999
No 117
>PRK08069 consensus
Probab=60.01 E-value=11 Score=16.70 Aligned_cols=20 Identities=10% Similarity=0.076 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHCCEEEE
Q ss_conf 89999999999871886998
Q gi|254780869|r 237 VSRIRSIIDIAEQIGRKIVL 256 (559)
Q Consensus 237 i~Ri~~i~~~a~~~~R~v~i 256 (559)
-++++++.++|++++--|+.
T Consensus 182 ~e~l~~i~~la~~~~~~vi~ 201 (390)
T PRK08069 182 KEELAALGEVCLEHDILIVS 201 (390)
T ss_pred CHHHHHHHHHHHHCCEEEEE
T ss_conf 06899999998756305985
No 118
>PRK05293 glgC glucose-1-phosphate adenylyltransferase; Provisional
Probab=59.77 E-value=11 Score=16.67 Aligned_cols=28 Identities=14% Similarity=0.162 Sum_probs=11.9
Q ss_pred EEEEEEECCCCCCCCCEEEEEECCCEEE
Q ss_conf 8999985567777653567987681799
Q gi|254780869|r 134 FSIESVRVNHSIPETMALVIRSPVGNIV 161 (559)
Q Consensus 134 ~~v~~~~~~Hsip~a~~~~I~t~~g~i~ 161 (559)
.++-.+.+...=|..+|.+..-++++|.
T Consensus 147 ~Ti~~~~v~~~~~~~yGvv~~d~~g~I~ 174 (381)
T PRK05293 147 VTIAVIEVPWEEASRFGIMNTDEEMRIV 174 (381)
T ss_pred CCEEEEEECCCCCCCCEEEEECCCCCEE
T ss_conf 5037898051264416089987999799
No 119
>PRK05677 acyl-CoA synthetase; Validated
Probab=59.45 E-value=12 Score=16.64 Aligned_cols=60 Identities=18% Similarity=0.316 Sum_probs=34.9
Q ss_pred ECCCEEEEECCC-CEEEEEEEECCCEEECCCCEECCCCHHHHHHHHHHHCCEEEEEEE-E-CC-CCCEE
Q ss_conf 003227897389-704501232132021233100255058899997403874999999-8-38-99880
Q gi|254780869|r 416 VRNGKMLRLFPD-PIEIIDEVVHGLFLKDGFLIGKFADLGIAKRRQLSFVGHLSVNVL-L-DN-HYNIF 480 (559)
Q Consensus 416 ~~NGd~i~l~~~-~~~i~~~v~~g~~~vDG~~i~~~~~~vl~eR~~Ls~~GiV~V~vi-i-d~-~~~l~ 480 (559)
..-||+..++++ .+.+.++.+ .-+-+.|..+. ..+. |...++..|+.-+.++ + |. .+..+
T Consensus 435 ~~TGDlg~~d~dG~l~~~GR~~-d~Ik~~G~~V~-p~EI---E~~l~~hp~V~eaavvgvpd~~~ge~~ 498 (562)
T PRK05677 435 LKTGDIALIQEDGYMRIVDRKK-DMILVSGFNVY-PNEL---EDVLATLPGVLQCAAIGVPDEKSGEAI 498 (562)
T ss_pred CCCCCEEEECCCCCEEEEECCC-CEEEECCEEEC-HHHH---HHHHHHCCCCCEEEEEEEECCCCCCEE
T ss_conf 3268669986994299997356-88998999989-9999---999986998107999998879999389
No 120
>cd00532 MGS-like MGS-like domain. This domain composes the whole protein of methylglyoxal synthetase, which catalyzes the enolization of dihydroxyacetone phosphate (DHAP) to produce methylglyoxal. The family also includes the C-terminal domain in carbamoyl phosphate synthetase (CPS) where it catalyzes the last phosphorylation of a coaboxyphosphate intermediate to form the product carbamoyl phosphate and may also play a regulatory role. This family also includes inosine monophosphate cyclohydrolase. The known structures in this family show a common phosphate binding site.
Probab=59.31 E-value=11 Score=16.68 Aligned_cols=38 Identities=13% Similarity=0.098 Sum_probs=29.5
Q ss_pred EEEEECCCCCCCCCHHHH--HHHCCCCEECCHHHHHHHHH
Q ss_conf 899605430121607888--98629977929999999999
Q gi|254780869|r 70 AIFITHAHEDHYGALHDL--WSFLHVPVYASPFAIGLLEA 107 (559)
Q Consensus 70 ~i~iTH~H~DHiGalp~l--~~~~~~pIY~s~~t~~li~~ 107 (559)
|||||=...|--.+++.. +.+++++||||..|+.+|+.
T Consensus 1 ~VfiSv~D~DK~~~i~~ak~l~~lGf~i~AT~GTa~~L~~ 40 (112)
T cd00532 1 GVFLSVSDHVKAMLVDLAPKLSSDGFPLFATGGTSRVLAD 40 (112)
T ss_pred CEEEEEECCCHHHHHHHHHHHHHCCCEEEECHHHHHHHHH
T ss_conf 9899986575668999999999889999988689999998
No 121
>PRK07568 aspartate aminotransferase; Provisional
Probab=59.29 E-value=12 Score=16.62 Aligned_cols=18 Identities=22% Similarity=0.331 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHCCEE
Q ss_conf 899999999998718869
Q gi|254780869|r 237 VSRIRSIIDIAEQIGRKI 254 (559)
Q Consensus 237 i~Ri~~i~~~a~~~~R~v 254 (559)
-+++++++++|+++|--|
T Consensus 181 ~~~~~~l~~la~~~~~~i 198 (396)
T PRK07568 181 KEELRQLADIAKEHDLFL 198 (396)
T ss_pred HHHHHHHHHHHHHHCEEE
T ss_conf 578999999998710667
No 122
>PRK05826 pyruvate kinase; Provisional
Probab=59.07 E-value=12 Score=16.59 Aligned_cols=48 Identities=8% Similarity=0.131 Sum_probs=21.1
Q ss_pred CCCHHHHHHHHHHHHHHCCCCEEEEECHHHHHHHHHHHHHHHHHCC-EEEE
Q ss_conf 7778799999999986279839999414778999999999987188-6998
Q gi|254780869|r 207 CISEKGIKKNIYDIMKNAKGCVLVTTFSSSVSRIRSIIDIAEQIGR-KIVL 256 (559)
Q Consensus 207 ~~sE~~v~~~i~~~~~~~~grViv~~fasni~Ri~~i~~~a~~~~R-~v~i 256 (559)
+.||.+..+- . .-.+.+=-.+..+|.++-+=+.++-++..+.|. .+-+
T Consensus 170 ~lTekD~~di-~-fa~~~~vD~ialSFVrsa~DV~~lr~~l~~~~~~~~~I 218 (461)
T PRK05826 170 ALTEKDKADI-K-FAAEQGVDYIAVSFVRNAEDVEEARRLLREAGNCDAKI 218 (461)
T ss_pred CCCHHHHHHH-H-HHHHCCCCEEEECCCCCHHHHHHHHHHHHHCCCCCCEE
T ss_conf 7986689999-9-99976999997468898678999999999729998448
No 123
>PRK12414 putative aminotransferase; Provisional
Probab=58.69 E-value=12 Score=16.55 Aligned_cols=21 Identities=0% Similarity=0.015 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHCCEEEEE
Q ss_conf 899999999998718869984
Q gi|254780869|r 237 VSRIRSIIDIAEQIGRKIVLL 257 (559)
Q Consensus 237 i~Ri~~i~~~a~~~~R~v~i~ 257 (559)
-+++++++++|++++--|+.+
T Consensus 181 ~e~l~~l~~la~~~~i~ii~D 201 (384)
T PRK12414 181 EADLARLAQLTRGTDIVVLSD 201 (384)
T ss_pred HHHHHHHHHHHHHCCEEEEEC
T ss_conf 666999999875158899966
No 124
>TIGR00519 asnASE_I L-asparaginases, type I; InterPro: IPR006033 Two related families of asparaginase are designated type I and type II according to the terminology in Escherichia coli, which has both: L-asparaginase I is a low-affinity enzyme found in the cytoplasm, while L-asparaginase II is a high-affinity secreted enzyme synthesized with a cleavable signal sequence. This family includes L-asparaginases related to type I of E. coli. Archaeal putative asparaginases are of this type but contain an extra ~80 residues in a conserved N-terminal region. These archaeal homologs are included in this family. ; GO: 0004067 asparaginase activity, 0006520 amino acid metabolic process.
Probab=57.45 E-value=12 Score=16.46 Aligned_cols=115 Identities=10% Similarity=0.070 Sum_probs=63.5
Q ss_pred EEEECCCEEEEECCC-CEEEEEEEE---CCCEEECCCCEECCCCHH---HHHHHHHHHCCEEEEEEEECCCCCEEEC---
Q ss_conf 155003227897389-704501232---132021233100255058---8999974038749999998389988005---
Q gi|254780869|r 413 VPPVRNGKMLRLFPD-PIEIIDEVV---HGLFLKDGFLIGKFADLG---IAKRRQLSFVGHLSVNVLLDNHYNIFGV--- 482 (559)
Q Consensus 413 i~l~~NGd~i~l~~~-~~~i~~~v~---~g~~~vDG~~i~~~~~~v---l~eR~~Ls~~GiV~V~viid~~~~l~~~--- 482 (559)
+.+.+.=-+|.+.|| .+.+.+... ..-+.+.|.|+|.+-... |.+=+.+.+.|+|+|...--=+++..-.
T Consensus 216 ~~le~~V~lik~yPGl~~di~~~~~~~~YkGiViegtG~G~~P~~~R~~l~~~~ea~d~GvVVV~ttQCl~GrvnM~vY~ 295 (347)
T TIGR00519 216 TRLEEKVALIKLYPGLSPDIIRAYLSKGYKGIVIEGTGLGHVPQELRDILSKLQEAIDSGVVVVMTTQCLNGRVNMNVYS 295 (347)
T ss_pred CCCCCCEEEEEECCCCCHHHHHHHCCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHCCEEEEEEEEECCCCEECCCCH
T ss_conf 66775148998668988899998626993489982046788835688999987763228716887544315853276222
Q ss_pred --CEEEEECCEECCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHH
Q ss_conf --37999401212566588999999999999985220036898999999999999
Q gi|254780869|r 483 --PEIVDIGIPAYDGDGGKIHKLLLKTVITTVVDLPQFRRKDLKLLRESISSALR 535 (559)
Q Consensus 483 --P~I~~~Gl~~~~~~~~~l~~~i~~~i~~~i~~~~~~~~~d~~~lk~~ir~~ir 535 (559)
=++..-|+. ..+|. .-|.. +.++. +...+..|...+|+.+++.++
T Consensus 296 tGR~l~~aGVI-~~~DM---~~Ev~--l~KL~--wlLGq~~D~E~~k~~m~~n~a 342 (347)
T TIGR00519 296 TGRRLLQAGVI-GGEDM---LPEVA--LVKLM--WLLGQYSDPEEVKKMMEKNIA 342 (347)
T ss_pred HHHHHHHHCCC-CCCCC---CHHHH--HHHHH--HHHCCCCCHHHHHHHHHCCCC
T ss_conf 46999870465-88987---53145--45567--761799786899999706876
No 125
>TIGR01481 ccpA catabolite control protein A; InterPro: IPR006377 Catabolite control protein A is a LacI family global transcriptional regulator found in Gram-positive bacteria. CcpA is involved in repressing carbohydrate utilization genes [ex: alpha-amylase (amyE), acetyl-coenzyme A synthase (acsA)] and in activating genes involved in transporting excess carbon from the cell [e.g. acetate kinase (ackA), alpha-acetolactate synthase (alsS)]. Additionally, disruption of CcpA in Bacillus megaterium, Staphylococcus xylosus, Lactobacillus casei and Lactocacillus pentosus also decreases growth rate, which suggests CcpA is involved in the regulation of other metabolic pathways.; GO: 0030528 transcription regulator activity, 0045449 regulation of transcription.
Probab=56.97 E-value=13 Score=16.35 Aligned_cols=156 Identities=19% Similarity=0.228 Sum_probs=89.3
Q ss_pred HHHHHHHHHHHHCCCCEEEEE-------CHH-HHHHHHHHHHHHHHH----CCEEEEECHHHHHHHHHHHH-CCCCCCCC
Q ss_conf 999999999862798399994-------147-789999999999871----88699844869999998874-28767765
Q gi|254780869|r 212 GIKKNIYDIMKNAKGCVLVTT-------FSS-SVSRIRSIIDIAEQI----GRKIVLLGSSLKRVVSVAID-VGIIKKDQ 278 (559)
Q Consensus 212 ~v~~~i~~~~~~~~grViv~~-------fas-ni~Ri~~i~~~a~~~----~R~v~i~Grs~~~~~~~a~~-~g~l~~~~ 278 (559)
.+.+.+++.|+.++--|+++. |+| ||++.|...++-.++ .++|+|.|=++..-++.-.+ .||=.
T Consensus 126 ~Ite~~re~F~rs~~PVVLAGt~D~~~~~pSVNIDy~~A~kEav~~l~~~GhK~iAfv~G~L~~~~N~~~~l~GykE--- 202 (332)
T TIGR01481 126 EITEKLREEFSRSPVPVVLAGTVDKENELPSVNIDYKQATKEAVKELIAKGHKKIAFVSGSLSDSVNGEVRLEGYKE--- 202 (332)
T ss_pred HHHHHHHHHHHCCCCCEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCEECCCHHHH---
T ss_conf 21089999971289988995354865467731016789999999998633582688873675711045201330467---
Q ss_pred CCCCHHHHCCCCCCCEEEE-EECCCCCHHHHHHHHCCCCCCCCCCCCCCEEEEEEECCCCHHHHHHHHHHHHHCCCEEEE
Q ss_conf 4226566223880208999-966963268898852027776530268966999961588617789999976510311343
Q gi|254780869|r 279 LFLSDESFGLYPREQLIVI-ATGSQGEPRSALAQLSRGEMRNVKLAEKDTVIFSSRAIPGNEVAIGHIKNRLVEQGVRVI 357 (559)
Q Consensus 279 ~~i~~~~~~~~p~~~~~ii-~TGsqge~~a~l~ria~~~~~~i~l~~~D~vI~ss~~ipGnE~~~~~~~n~l~~~g~~vi 357 (559)
-.++ ..++=++-++. .-=+-.+-+.+..+|+.. .|.-+-+|.. +-|. +.-++|.....|++|-
T Consensus 203 ---~L~~-~gI~~~e~L~~~~~YsY~~G~K~~~~l~~s-------~p~~tAv~v~----~DE~-A~G~lnaa~D~Gi~VP 266 (332)
T TIGR01481 203 ---ALKK-AGIAYEEDLVIEAKYSYDAGVKLAAELLES-------SPKITAVVVA----DDEL-AIGILNAALDAGIKVP 266 (332)
T ss_pred ---HHHH-CCCCCCCCEEEECCCCCHHHHHHHHHHHHC-------CCCCCEEEEC----CHHH-HHHHHHHHHHCCCCCC
T ss_conf ---8873-687414221330455504469999999853-------8996589981----8288-9999999985789887
Q ss_pred ECCCCCCEECCCCCCHHHHHHHHHHCCCCEEEEECCCH
Q ss_conf 03566641315788978999999754953999704577
Q gi|254780869|r 358 AEDAECPVHVSGHPYPNDLKRMYQWIRPQVLVAIHGEP 395 (559)
Q Consensus 358 ~~~~~~~iH~SGHa~~edl~~li~~ikPk~~IPvHGe~ 395 (559)
++ ..+=+| +=..+-+.+||..-==+.=.|
T Consensus 267 -eD--Levits------nnt~l~~~~RP~Lsti~qPLY 295 (332)
T TIGR01481 267 -ED--LEVITS------NNTKLTEMVRPQLSTIVQPLY 295 (332)
T ss_pred -CC--CEEECC------CCCEEEEEECCCCCEECCCHH
T ss_conf -64--567410------660231120664011105504
No 126
>TIGR00631 uvrb excinuclease ABC, B subunit; InterPro: IPR004807 All proteins in this family for which functions are known are DNA helicases that function in the nucleotide excision repair and are endonucleases that make the 3' incision next to DNA damage. They are part of a pathway requiring UvrA, UvrB, UvrC, and UvrD homologs.; GO: 0009381 excinuclease ABC activity, 0006289 nucleotide-excision repair, 0005737 cytoplasm, 0009380 excinuclease repair complex.
Probab=56.89 E-value=13 Score=16.34 Aligned_cols=74 Identities=15% Similarity=0.147 Sum_probs=36.9
Q ss_pred HHHHHHHHHCCEEEEEEEEC--CCC-CEEECCEEEE--------ECCEECCCCHHHHHHHHHHHHHHHHHHHHHCCCCCH
Q ss_conf 89999740387499999983--899-8800537999--------401212566588999999999999985220036898
Q gi|254780869|r 455 IAKRRQLSFVGHLSVNVLLD--NHY-NIFGVPEIVD--------IGIPAYDGDGGKIHKLLLKTVITTVVDLPQFRRKDL 523 (559)
Q Consensus 455 l~eR~~Ls~~GiV~V~viid--~~~-~l~~~P~I~~--------~Gl~~~~~~~~~l~~~i~~~i~~~i~~~~~~~~~d~ 523 (559)
|+|-|. |-+-|-|=|| +.| + -|+||. -||+ .+...|++.+-.++.|.-..--.-..+=-
T Consensus 490 irdLR~----G~fDVLVGINLLREGLD---lPEVSLVAILDADKEGFL---RSerSLIQTIGRAARN~~G~VilYAD~iT 559 (667)
T TIGR00631 490 IRDLRL----GEFDVLVGINLLREGLD---LPEVSLVAILDADKEGFL---RSERSLIQTIGRAARNVNGKVILYADKIT 559 (667)
T ss_pred HHHHCC----CCCEEEEECCHHHCCCC---CHHHHHHHHHCCCCCCCC---CCCCHHHHHHHHHHHCCCCEEEEECCCCC
T ss_conf 998447----88408860002002465---114889976327888998---66302788988875257965999728700
Q ss_pred HHHHHHHHHHHHHHH
Q ss_conf 999999999999999
Q gi|254780869|r 524 KLLRESISSALRSLL 538 (559)
Q Consensus 524 ~~lk~~ir~~irk~~ 538 (559)
++++.+|.++=||--
T Consensus 560 ~sM~~AI~ET~RRR~ 574 (667)
T TIGR00631 560 DSMQKAIEETERRRK 574 (667)
T ss_pred HHHHHHHHHHHHHHH
T ss_conf 789999998788899
No 127
>cd01422 MGS Methylglyoxal synthase catalyzes the enolization of dihydroxyacetone phosphate (DHAP) to produce methylglyoxal. The first part of the catalytic mechanism is believed to be similar to TIM (triosephosphate isomerase) in that both enzymes utilize DHAP to form an ene-diolate phosphate intermediate. In MGS, the second catalytic step is characterized by the elimination of phosphate and collapse of the enediolate to form methylglyoxal instead of reprotonation to form the isomer glyceraldehyde 3-phosphate, as in TIM. This is the first reaction in the methylglyoxal bypass of the Embden-Myerhoff glycolytic pathway and is believed to provide physiological benefits under non-ideal growth conditions in bacteria.
Probab=56.85 E-value=4.3 Score=19.74 Aligned_cols=15 Identities=20% Similarity=0.443 Sum_probs=9.2
Q ss_pred CCCCCHHHHHHHHHH
Q ss_conf 578897899999975
Q gi|254780869|r 368 SGHPYPNDLKRMYQW 382 (559)
Q Consensus 368 SGHa~~edl~~li~~ 382 (559)
+-|+...|.+.++++
T Consensus 82 ~~~ph~~Di~aLlRl 96 (115)
T cd01422 82 TAQPHEPDVKALLRL 96 (115)
T ss_pred CCCCCCCCHHHHHHH
T ss_conf 779997029999999
No 128
>PRK01045 ispH 4-hydroxy-3-methylbut-2-enyl diphosphate reductase; Reviewed
Probab=56.36 E-value=13 Score=16.28 Aligned_cols=25 Identities=20% Similarity=0.424 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHCCEEEEECHH
Q ss_conf 7899999999998718869984486
Q gi|254780869|r 236 SVSRIRSIIDIAEQIGRKIVLLGSS 260 (559)
Q Consensus 236 ni~Ri~~i~~~a~~~~R~v~i~Grs 260 (559)
-+.+++..++-..+-|.+++++|..
T Consensus 98 ~V~k~~~~v~~~~~~Gy~iviiG~~ 122 (304)
T PRK01045 98 LVTKVHKEVARMSREGYEIILIGHK 122 (304)
T ss_pred CHHHHHHHHHHHHHCCCEEEEECCC
T ss_conf 0589999999998589889998178
No 129
>PRK09275 aspartate aminotransferase; Provisional
Probab=56.10 E-value=13 Score=16.25 Aligned_cols=111 Identities=15% Similarity=0.200 Sum_probs=65.1
Q ss_pred CCCCCCCHHHHHHCCCCCCEEEEECCCCCCCC-CCCCCHHHHHHHHHHHHHH-CCCCEEE-----EECHHHHHHHHHHHH
Q ss_conf 65423898899860878829999635645788-8777787999999999862-7983999-----941477899999999
Q gi|254780869|r 173 ILGDVTDKDSLCAIGNEGILALMCDSTNAMRE-GTCISEKGIKKNIYDIMKN-AKGCVLV-----TTFSSSVSRIRSIID 245 (559)
Q Consensus 173 ~~g~~~d~~~l~~~~~~gv~~Li~esT~~~~~-~~~~sE~~v~~~i~~~~~~-~~grViv-----~~fasni~Ri~~i~~ 245 (559)
..+....-+.+.++.+..|.+|.+- |-.+| ..+.|. +..+.+.+++++ .+..+|+ +||+.|...+ +.
T Consensus 228 ~~~WQy~d~EleKL~DP~IKAlf~V--NPsNP~S~~ls~-e~l~~i~~IV~~~nPdLmIiTDDVYgTF~~~F~Sl---~a 301 (531)
T PRK09275 228 KNEWQYPDKELEKLRDPSIKALFVV--NPSNPPSVAMSD-ESLEKIADIVKEDRPDLMIITDDVYGTFVDDFRSL---FA 301 (531)
T ss_pred CCCCCCCHHHHHHHCCCCCEEEEEE--CCCCCCCCCCCH-HHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCEEH---HH
T ss_conf 4588779899987449771189998--999986665699-99999999997429987999546532264564636---56
Q ss_pred HHHHHCCEEEEECHHHHHHHH-HHHHCCCCCCCCCCCCHHHHCCCCCCC
Q ss_conf 998718869984486999999-887428767765422656622388020
Q gi|254780869|r 246 IAEQIGRKIVLLGSSLKRVVS-VAIDVGIIKKDQLFLSDESFGLYPREQ 293 (559)
Q Consensus 246 ~a~~~~R~v~i~Grs~~~~~~-~a~~~g~l~~~~~~i~~~~~~~~p~~~ 293 (559)
.| -.| ++++++ +-++.. +.+++|.+-.-+.-+-.+.++++|.++
T Consensus 302 ~~-P~N-Ti~VYS--fSKyFGaTGWRLG~Ialh~~NvfD~~i~~Lp~~~ 346 (531)
T PRK09275 302 EL-PYN-TLLVYS--FSKYFGATGWRLGVIALHEDNVFDKLIAELPEEK 346 (531)
T ss_pred HC-CCC-EEEEEE--EHHCCCCCCCCCEEEEECCCCCHHHHHHHCCHHH
T ss_conf 48-875-478886--3100588441103445410330779998668878
No 130
>PRK04457 spermidine synthase; Provisional
Probab=55.51 E-value=13 Score=16.19 Aligned_cols=64 Identities=8% Similarity=0.081 Sum_probs=43.1
Q ss_pred CCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECHHHHHHHHHHHHHHHHHC
Q ss_conf 87882999963564578887777879999999998627983999941477899999999998718
Q gi|254780869|r 187 GNEGILALMCDSTNAMREGTCISEKGIKKNIYDIMKNAKGCVLVTTFSSSVSRIRSIIDIAEQIG 251 (559)
Q Consensus 187 ~~~gv~~Li~esT~~~~~~~~~sE~~v~~~i~~~~~~~~grViv~~fasni~Ri~~i~~~a~~~~ 251 (559)
.....|++++|+.............+..+.+.+.++. .|-.++.+|+++=..-..+.+++...+
T Consensus 133 ~~~~~DvI~vD~fd~~g~~~~L~t~~Fy~~c~~~L~~-~Gvlv~Nl~~~~~~~~~~l~~i~~~F~ 196 (262)
T PRK04457 133 FPASTDVILVDGFDGEQIVDALVTQPFFRDCRNALSS-DGVFVTNLWSGDKRYQRYIERLLSVFE 196 (262)
T ss_pred CCCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHCCC-CCEEEEECCCCCCCHHHHHHHHHHHHC
T ss_conf 8677788999688988886000829999999986498-939999868899865999999999728
No 131
>PRK07550 hypothetical protein; Provisional
Probab=55.28 E-value=13 Score=16.16 Aligned_cols=20 Identities=20% Similarity=0.421 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHCCEEEE
Q ss_conf 89999999999871886998
Q gi|254780869|r 237 VSRIRSIIDIAEQIGRKIVL 256 (559)
Q Consensus 237 i~Ri~~i~~~a~~~~R~v~i 256 (559)
-++++.++++|+++|--|+.
T Consensus 183 ~e~l~~l~~la~~~~~~iI~ 202 (387)
T PRK07550 183 PELLHELYDLARRRGLALIL 202 (387)
T ss_pred HHHHHHHHHHCCCEEEEEEE
T ss_conf 79853465430331589994
No 132
>COG1519 KdtA 3-deoxy-D-manno-octulosonic-acid transferase [Cell envelope biogenesis, outer membrane]
Probab=54.13 E-value=14 Score=16.04 Aligned_cols=47 Identities=26% Similarity=0.273 Sum_probs=27.1
Q ss_pred CEECCCCCCHHH-HHHHHHHCCCCE------EEEECCCHHHHHHHHHHHHHCCCCC
Q ss_conf 413157889789-999997549539------9970457799999998787447863
Q gi|254780869|r 364 PVHVSGHPYPND-LKRMYQWIRPQV------LVAIHGEPLHLVAHKELALQEGIAC 412 (559)
Q Consensus 364 ~iH~SGHa~~ed-l~~li~~ikPk~------~IPvHGe~rhl~~h~~la~~~gv~~ 412 (559)
.+-.|-|...|| ....++.++-++ ++|=|=| ...+..++++..|..-
T Consensus 234 ~iaaSTH~GEeei~l~~~~~l~~~~~~~llIlVPRHpE--Rf~~v~~l~~~~gl~~ 287 (419)
T COG1519 234 WVAASTHEGEEEIILDAHQALKKQFPNLLLILVPRHPE--RFKAVENLLKRKGLSV 287 (419)
T ss_pred EEEECCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCHH--HHHHHHHHHHHCCCEE
T ss_conf 99954778638899999999996389956999158755--6799999999759818
No 133
>cd03371 TPP_PpyrDC Thiamine pyrophosphate (TPP) family, PpyrDC subfamily, TPP-binding module; composed of proteins similar to phosphonopyruvate decarboxylase (PpyrDC) proteins. PpyrDC is a homotrimeric enzyme which functions in the biosynthesis of C-P compounds such as bialaphos tripeptide in Streptomyces hygroscopicus. These proteins require TPP and divalent metal cation cofactors.
Probab=54.11 E-value=12 Score=16.56 Aligned_cols=16 Identities=19% Similarity=0.150 Sum_probs=7.5
Q ss_pred HHHHCCEEEEEEEECC
Q ss_conf 7403874999999838
Q gi|254780869|r 460 QLSFVGHLSVNVLLDN 475 (559)
Q Consensus 460 ~Ls~~GiV~V~viid~ 475 (559)
.++.+|-++|.+.+|.
T Consensus 149 al~~~gP~~ieV~idp 164 (188)
T cd03371 149 ALAADGPAFIEVKVRP 164 (188)
T ss_pred HHHCCCCEEEEEEECC
T ss_conf 9848999999999789
No 134
>cd05006 SIS_GmhA Phosphoheptose isomerase is a member of the SIS (Sugar ISomerase) superfamily. Phosphoheptose isomerase catalyzes the isomerization of sedoheptulose 7-phosphate into D-glycero-D-mannoheptose 7-phosphate. This is the first step of the biosynthesis of gram-negative bacteria inner core lipopolysaccharide precursor, L-glycero-D-mannoheptose (Gmh).
Probab=53.90 E-value=14 Score=16.01 Aligned_cols=140 Identities=19% Similarity=0.195 Sum_probs=76.6
Q ss_pred HHHHHHHHHHHHHHHHHCCEEEEECH--H--HHHHHHHHHHC-CCCCCCCCCCCHHHHCCCCCCCEEEEEECCCCCHHHH
Q ss_conf 47789999999999871886998448--6--99999988742-8767765422656622388020899996696326889
Q gi|254780869|r 234 SSSVSRIRSIIDIAEQIGRKIVLLGS--S--LKRVVSVAIDV-GIIKKDQLFLSDESFGLYPREQLIVIATGSQGEPRSA 308 (559)
Q Consensus 234 asni~Ri~~i~~~a~~~~R~v~i~Gr--s--~~~~~~~a~~~-g~l~~~~~~i~~~~~~~~p~~~~~ii~TGsqge~~a~ 308 (559)
+..+.+...++.-|.+.|++|++.|. | ....+ +.++ +-+... -|.=..+-++ + -.+.
T Consensus 16 ~~~i~~~~~~i~~~~~~g~kI~~~GNGgSa~~A~H~--a~dl~~~~~~~-----------r~~l~aisL~--~---~~~~ 77 (177)
T cd05006 16 AEAIEQAAQLLAEALLNGGKILICGNGGSAADAQHF--AAELVKRFEKE-----------RPGLPAIALT--T---DTSI 77 (177)
T ss_pred HHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHH--HHHHHCCCCCC-----------CCCEEEEECC--C---CHHH
T ss_conf 899999999999999879989999687408889999--99873576668-----------8870179767--8---7788
Q ss_pred HHHHCCCCC-CC-------CCCCCCCEEEEEEECCCCHHHHHHHHHHHHHCCCEEEEECCCCCCEECCCCCCHHHHHHHH
Q ss_conf 885202777-65-------3026896699996158861778999997651031134303566641315788978999999
Q gi|254780869|r 309 LAQLSRGEM-RN-------VKLAEKDTVIFSSRAIPGNEVAIGHIKNRLVEQGVRVIAEDAECPVHVSGHPYPNDLKRMY 380 (559)
Q Consensus 309 l~ria~~~~-~~-------i~l~~~D~vI~ss~~ipGnE~~~~~~~n~l~~~g~~vi~~~~~~~iH~SGHa~~edl~~li 380 (559)
+.-++++.. .. -..+++|.+|.-|.- ||.+.+-+.++.-.+.|.+++.. +|.... .|.
T Consensus 78 ~ta~~ND~~~~~if~~ql~~~~~~gDili~iS~s--G~s~nii~a~~~ak~~g~~~i~l--------tg~~gg-~l~--- 143 (177)
T cd05006 78 LTAIANDYGYEEVFSRQVEALGQPGDVLIGISTS--GNSPNVLKALEAAKERGMKTIAL--------TGRDGG-KLL--- 143 (177)
T ss_pred HHHHHCCCCHHHHHHHHHHHHCCCCCEEEEECCC--CCCHHHHHHHHHHHHCCCEEEEE--------ECCCCC-HHH---
T ss_conf 8887565329999999999744689889998189--99989999999999879989999--------878986-167---
Q ss_pred HHCCCCEEEEECCCHHHHHHHHHHH
Q ss_conf 7549539997045779999999878
Q gi|254780869|r 381 QWIRPQVLVAIHGEPLHLVAHKELA 405 (559)
Q Consensus 381 ~~ikPk~~IPvHGe~rhl~~h~~la 405 (559)
+.-.-.+.+|-.-..|..-.|.-+-
T Consensus 144 ~~~D~~i~vps~~~~~vee~Hl~i~ 168 (177)
T cd05006 144 ELADIEIHVPSDDTPRIQEVHLLIG 168 (177)
T ss_pred HHCCEEEEECCCCCHHHHHHHHHHH
T ss_conf 6199899969998589999999999
No 135
>PRK02947 hypothetical protein; Provisional
Probab=53.12 E-value=14 Score=15.93 Aligned_cols=41 Identities=15% Similarity=0.220 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHHHHHCCEEEEEC--HHHHHHHHHHHHCCCC
Q ss_conf 4778999999999987188699844--8699999988742876
Q gi|254780869|r 234 SSSVSRIRSIIDIAEQIGRKIVLLG--SSLKRVVSVAIDVGII 274 (559)
Q Consensus 234 asni~Ri~~i~~~a~~~~R~v~i~G--rs~~~~~~~a~~~g~l 274 (559)
..||.+.-.++--+.+.|..|.+.| .|..-..++.-+.|=|
T Consensus 24 ~~~I~~Aa~~ia~si~~gg~i~~fGtGHS~~~a~E~f~RAGGl 66 (247)
T PRK02947 24 ADAIKQAADLVADSIANGGRIYVFGTGHSHMAAEEVFYRAGGL 66 (247)
T ss_pred HHHHHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHCCCCC
T ss_conf 9999999999999997599799988851648999874114764
No 136
>cd05013 SIS_RpiR RpiR-like protein. RpiR contains a SIS (Sugar ISomerase) domain, which is found in many phosphosugar isomerases and phosphosugar binding proteins. In E. coli, rpiR negatively regulates the expression of rpiB gene. Both rpiB and rpiA are ribose phosphate isomerases that catalyze the reversible reactions of ribose 5-phosphate into ribulose 5-phosphate.
Probab=53.04 E-value=14 Score=15.92 Aligned_cols=36 Identities=31% Similarity=0.305 Sum_probs=26.8
Q ss_pred CCCCCCEEEEEEECCCCHHHHHHHHHHHHHCCCEEEEE
Q ss_conf 02689669999615886177899999765103113430
Q gi|254780869|r 321 KLAEKDTVIFSSRAIPGNEVAIGHIKNRLVEQGVRVIA 358 (559)
Q Consensus 321 ~l~~~D~vI~ss~~ipGnE~~~~~~~n~l~~~g~~vi~ 358 (559)
.++++|.+|+-|.. |.-+.+.++.....+.|++++.
T Consensus 57 ~~~~~d~~i~iS~s--g~~~~~~~~~~~ak~~g~~ii~ 92 (139)
T cd05013 57 NLTPGDVVIAISFS--GETKETVEAAEIAKERGAKVIA 92 (139)
T ss_pred CCCCCCEEEEECCC--CCCHHHHHHHHHHHHCCCEEEE
T ss_conf 59999999997686--3637899999999986997999
No 137
>TIGR02297 HpaA 4-hydroxyphenylacetate catabolism regulatory protein HpaA; InterPro: IPR011983 This putative transcriptional regulator, which contains both the substrate-binding, dimerisation domain and the helix-turn-helix DNA-binding domain of the AraC famil, is located proximal to genes of the 4-hydroxyphenylacetate catabolism pathway ..
Probab=52.89 E-value=12 Score=16.62 Aligned_cols=30 Identities=13% Similarity=0.189 Sum_probs=19.5
Q ss_pred ECC-EEEEEEECCCCC---CCCCEEEEEECCCEE
Q ss_conf 634-899998556777---765356798768179
Q gi|254780869|r 131 VGA-FSIESVRVNHSI---PETMALVIRSPVGNI 160 (559)
Q Consensus 131 ~g~-~~v~~~~~~Hsi---p~a~~~~I~t~~g~i 160 (559)
-|| |-+||=.|.|+= +||-|.+|+.+..-|
T Consensus 67 ~ap~fflTPPsvPH~F~Td~da~GhVLTv~Q~Lv 100 (292)
T TIGR02297 67 SAPLFFLTPPSVPHAFVTDADADGHVLTVRQELV 100 (292)
T ss_pred CCCEEEECCCCCCCCCCCCCCCCCEEEEECCHHH
T ss_conf 0885464765888844357888863788533025
No 138
>PRK09513 fruK 1-phosphofructokinase; Provisional
Probab=52.83 E-value=15 Score=15.90 Aligned_cols=15 Identities=20% Similarity=0.206 Sum_probs=7.7
Q ss_pred CCCCHHHHHHHHHHC
Q ss_conf 788978999999754
Q gi|254780869|r 369 GHPYPNDLKRMYQWI 383 (559)
Q Consensus 369 GHa~~edl~~li~~i 383 (559)
|=++++|+..|++.|
T Consensus 292 ~~~~~~~ve~l~~~v 306 (312)
T PRK09513 292 GITDRPQLAAMMARV 306 (312)
T ss_pred CCCCHHHHHHHHHCC
T ss_conf 999999999997086
No 139
>COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism]
Probab=52.24 E-value=15 Score=15.83 Aligned_cols=67 Identities=16% Similarity=0.169 Sum_probs=40.0
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEE-CHHHHHHHHHHHHHHHHHCCEEEEECHHHHHHHHHHHHCCC
Q ss_conf 56457888777787999999999862798399994-14778999999999987188699844869999998874287
Q gi|254780869|r 198 STNAMREGTCISEKGIKKNIYDIMKNAKGCVLVTT-FSSSVSRIRSIIDIAEQIGRKIVLLGSSLKRVVSVAIDVGI 273 (559)
Q Consensus 198 sT~~~~~~~~~sE~~v~~~i~~~~~~~~grViv~~-fasni~Ri~~i~~~a~~~~R~v~i~Grs~~~~~~~a~~~g~ 273 (559)
+||+..+ .|..|...++.+. +.+--++|.. =|+|++|-.-+.---.+.|+++++. .+.++.|++.|+
T Consensus 59 G~YSL~~-~S~DE~Var~~ll----~~~~D~ivnVvDA~nLeRnLyltlQLlE~g~p~ila----LNm~D~A~~~Gi 126 (653)
T COG0370 59 GTYSLTA-YSEDEKVARDFLL----EGKPDLIVNVVDATNLERNLYLTLQLLELGIPMILA----LNMIDEAKKRGI 126 (653)
T ss_pred CCCCCCC-CCCHHHHHHHHHH----CCCCCEEEEEECCCHHHHHHHHHHHHHHCCCCEEEE----ECCHHHHHHCCC
T ss_conf 7565888-9920899999986----389988999602323777789999999859985999----612756886497
No 140
>COG4252 Predicted transmembrane sensor domain [Signal transduction mechanisms]
Probab=52.06 E-value=14 Score=16.05 Aligned_cols=23 Identities=9% Similarity=0.004 Sum_probs=9.5
Q ss_pred HCCEEEEEEEECCCCCEEECCEE
Q ss_conf 38749999998389988005379
Q gi|254780869|r 463 FVGHLSVNVLLDNHYNIFGVPEI 485 (559)
Q Consensus 463 ~~GiV~V~viid~~~~l~~~P~I 485 (559)
.+.+|.|..+-..-++.+..|-.
T Consensus 264 r~RIVlIG~TA~s~~D~~~Tp~s 286 (400)
T COG4252 264 RGRIVLIGATAPSLNDYFATPYS 286 (400)
T ss_pred CCCEEEEECCCCCCCCCCCCCCC
T ss_conf 89889995157778985417875
No 141
>TIGR01398 FlhA flagellar biosynthesis protein FlhA; InterPro: IPR006301 These sequences describe the flagellar biosynthesis protein FlhA, one of a large number of genes associated with the biosynthesis of functional bacterial flagella. Homologs of many such proteins, including FlhA, function in type III protein secretion systems. ; GO: 0015031 protein transport, 0016021 integral to membrane, 0019861 flagellum.
Probab=51.91 E-value=7.9 Score=17.81 Aligned_cols=23 Identities=13% Similarity=0.235 Sum_probs=10.5
Q ss_pred CCCCCCHHHHHHHHHHCCCCEEE
Q ss_conf 15788978999999754953999
Q gi|254780869|r 367 VSGHPYPNDLKRMYQWIRPQVLV 389 (559)
Q Consensus 367 ~SGHa~~edl~~li~~ikPk~~I 389 (559)
+..+.-|.=++.+++-..|...+
T Consensus 673 ~t~~~~R~~~~~~le~~~~~~~V 695 (713)
T TIGR01398 673 LTSPRVRPYVRRILERYFPELPV 695 (713)
T ss_pred ECCCHHHHHHHHHHHHHCCCCCC
T ss_conf 72860248999999873587400
No 142
>PRK08362 consensus
Probab=51.48 E-value=15 Score=15.75 Aligned_cols=20 Identities=15% Similarity=0.185 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHCCEEEE
Q ss_conf 89999999999871886998
Q gi|254780869|r 237 VSRIRSIIDIAEQIGRKIVL 256 (559)
Q Consensus 237 i~Ri~~i~~~a~~~~R~v~i 256 (559)
-+++++++++|++++--|+.
T Consensus 179 ~~~l~~i~~~a~~~~~~ii~ 198 (389)
T PRK08362 179 KKDLEEIADFAVEHDLMVIS 198 (389)
T ss_pred HHHHHHHHHHHHHCCEEEEE
T ss_conf 99999999998754957981
No 143
>TIGR01931 cysJ sulfite reductase [NADPH] flavoprotein, alpha-component; InterPro: IPR010199 This entry describes an NADPH-dependent sulphite reductase flavoprotein subunit. Most members of the proteins of this entry are found in Cys biosynthesis gene clusters. The closest homologues are designated as subunits nitrate reductase.; GO: 0004783 sulfite reductase (NADPH) activity, 0000103 sulfate assimilation, 0019344 cysteine biosynthetic process.
Probab=51.48 E-value=15 Score=15.75 Aligned_cols=33 Identities=21% Similarity=0.039 Sum_probs=13.4
Q ss_pred CCCEECCCCHHHHHHHHHHHCCEEEEEEEECCCCC
Q ss_conf 33100255058899997403874999999838998
Q gi|254780869|r 444 GFLIGKFADLGIAKRRQLSFVGHLSVNVLLDNHYN 478 (559)
Q Consensus 444 G~~i~~~~~~vl~eR~~Ls~~GiV~V~viid~~~~ 478 (559)
|..-...+|..+.+| +..+|.|=|=|-=|.+.+
T Consensus 443 G~~r~GgaS~fLA~r--l~~gd~v~vyve~N~nFR 475 (628)
T TIGR01931 443 GRARLGGASGFLAER--LEEGDTVKVYVERNDNFR 475 (628)
T ss_pred CEEEECCCHHHHHHH--CCCCCEEEEEEEECCCCC
T ss_conf 647744105778865--088976778875177888
No 144
>PRK09265 aminotransferase AlaT; Validated
Probab=51.23 E-value=15 Score=15.72 Aligned_cols=16 Identities=25% Similarity=0.314 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHCC
Q ss_conf 8999999999987188
Q gi|254780869|r 237 VSRIRSIIDIAEQIGR 252 (559)
Q Consensus 237 i~Ri~~i~~~a~~~~R 252 (559)
-+.++++++.|++++-
T Consensus 187 ~~~l~~l~~~a~~~~i 202 (404)
T PRK09265 187 KELLEEIVEIARQHNL 202 (404)
T ss_pred HHHHHHHHHHHHHCEE
T ss_conf 0468899997631558
No 145
>PRK12691 flgG flagellar basal body rod protein FlgG; Reviewed
Probab=51.03 E-value=12 Score=16.49 Aligned_cols=40 Identities=23% Similarity=0.309 Sum_probs=24.7
Q ss_pred CCEEEEEEECCCCCCCCCEEEEEECCCEEEEC--CCCEECCC
Q ss_conf 34899998556777765356798768179983--34024677
Q gi|254780869|r 132 GAFSIESVRVNHSIPETMALVIRSPVGNIVHT--GDWKLDDD 171 (559)
Q Consensus 132 g~~~v~~~~~~Hsip~a~~~~I~t~~g~i~yt--GDfk~d~~ 171 (559)
|+++-|--+.+=.|-|.-.|.+.+|+|.+.|| |+|++|..
T Consensus 84 G~l~~Tg~~lDlAI~G~GfF~V~~~~G~~~yTR~G~F~~d~~ 125 (262)
T PRK12691 84 GTLSQTGNDLDLAIQGRGYFQIQLPDGETAYTRDGAFNRSAD 125 (262)
T ss_pred CCCEECCCCCEEEECCCCEEEEECCCCCEEEEECCCEEECCC
T ss_conf 875306882138984895688855899573654452679899
No 146
>PRK06242 flavodoxin; Provisional
Probab=51.01 E-value=16 Score=15.70 Aligned_cols=92 Identities=24% Similarity=0.295 Sum_probs=54.0
Q ss_pred CCCCCCEEEEEECCC-CCHHHHHHHHCCCCCCCCCCCCCCEEEEEEECCCCHHHHHHHHHHHHHCCCEEEEEC------C
Q ss_conf 388020899996696-326889885202777653026896699996158861778999997651031134303------5
Q gi|254780869|r 288 LYPREQLIVIATGSQ-GEPRSALAQLSRGEMRNVKLAEKDTVIFSSRAIPGNEVAIGHIKNRLVEQGVRVIAE------D 360 (559)
Q Consensus 288 ~~p~~~~~ii~TGsq-ge~~a~l~ria~~~~~~i~l~~~D~vI~ss~~ipGnE~~~~~~~n~l~~~g~~vi~~------~ 360 (559)
.+.+-+++.+-+|.. |.+...+.+...+-. .++-...++|++.-.+. ..-...+...|.+.|.+|+-. +
T Consensus 40 ~l~~yDlI~~Gsgiy~g~~~~~~~~fi~~l~---~~~gKkvf~F~T~G~~~-~~~~~~l~~~L~~kg~~v~G~F~CkG~d 115 (150)
T PRK06242 40 DLNEYDLIGFGSGIYYGKFHKNLLKLIDKLP---DGNGKKAFIFSTSGLGK-SKYHKALRKKLEEKGFIIIGEFTCKGFD 115 (150)
T ss_pred CCCCCCEEEECCCEECCCCCHHHHHHHHHCC---CCCCCEEEEEECCCCCC-CHHHHHHHHHHHHCCCEEEEEEEECCCC
T ss_conf 3021788998352034767989999999684---44698599998889897-3368999999996899797889841502
Q ss_pred CCCCE-----ECCCCCCHHHHHHHHHHC
Q ss_conf 66641-----315788978999999754
Q gi|254780869|r 361 AECPV-----HVSGHPYPNDLKRMYQWI 383 (559)
Q Consensus 361 ~~~~i-----H~SGHa~~edl~~li~~i 383 (559)
...++ -..|||+.+||..-.+..
T Consensus 116 t~gp~k~~ggi~kghPn~~Dl~~A~~Fa 143 (150)
T PRK06242 116 TFGPFKLIGGINKGHPNEKDLENAKEFA 143 (150)
T ss_pred CCCCHHHCCCCCCCCCCHHHHHHHHHHH
T ss_conf 5574432166548994989999999999
No 147
>PRK07868 acyl-CoA synthetase; Validated
Probab=50.43 E-value=16 Score=15.64 Aligned_cols=111 Identities=14% Similarity=0.135 Sum_probs=46.2
Q ss_pred HHHHHHHHCCEEEEECHHHHHHHHHHHHCCCCCCCCC----CCCHHHHCCCCCCCEEEEEE--CCCCCHHHHHHHHCCCC
Q ss_conf 9999987188699844869999998874287677654----22656622388020899996--69632688988520277
Q gi|254780869|r 243 IIDIAEQIGRKIVLLGSSLKRVVSVAIDVGIIKKDQL----FLSDESFGLYPREQLIVIAT--GSQGEPRSALAQLSRGE 316 (559)
Q Consensus 243 i~~~a~~~~R~v~i~Grs~~~~~~~a~~~g~l~~~~~----~i~~~~~~~~p~~~~~ii~T--Gsqge~~a~l~ria~~~ 316 (559)
+..++...+|.+.-....+.|.+--...+|.+++..- .+-.+++.+.|+...++.-- =+..+-..+.++.+++-
T Consensus 410 ~~~~~~~a~r~~~~~a~e~~r~lprl~rlgqi~~~trislg~~~~EqAr~~P~~eflLF~drv~TYa~VdrRin~VvRgL 489 (990)
T PRK07868 410 AADAVVAANRSVRTLAVETARTLPRLARLGQINDHTRISLGRIIDEQARDAPKGEFLLFDGRVHTYEAVDRRINNVVRGL 489 (990)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCHHHHHHCCCCCCCEEEHHHHHHHHHHCCCCCCEEEECCCEEEHHHHHHHHHHHHHHH
T ss_conf 99999886533788899998744244553146887674477888888740899856887373220998888899999999
Q ss_pred CCCCCCCCCCEEEEEEECCCCHHHHHHHHHHHHHCCCEEEEE
Q ss_conf 765302689669999615886177899999765103113430
Q gi|254780869|r 317 MRNVKLAEKDTVIFSSRAIPGNEVAIGHIKNRLVEQGVRVIA 358 (559)
Q Consensus 317 ~~~i~l~~~D~vI~ss~~ipGnE~~~~~~~n~l~~~g~~vi~ 358 (559)
+. +-+++||.|=.-. +|+.++--++-.|.|.|+-.+-
T Consensus 490 id-vGvRqGd~VgV~M----~trPsal~~iaaLsrLGAvavl 526 (990)
T PRK07868 490 IE-VGVRQGDRVGVLM----ETRPSALVAIAALSRLGAVAVL 526 (990)
T ss_pred HH-HCCCCCCEEEEEC----CCCCHHHHHHHHHHHCCCEEEE
T ss_conf 98-4778677799960----8983699999998751837998
No 148
>TIGR01469 cobA_cysG_Cterm uroporphyrin-III C-methyltransferase; InterPro: IPR006366 This domain is found in a family of sequences that represent enzymes, or enzyme domains, with uroporphyrin-III C-methyltransferase activity. This enzyme catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). Cobalamin contains cobalt while siroheme contains iron. Siroheme is a cofactor for nitrite and sulphite reductases and therefore plays a role in cysteine biosynthesis; many members of this family are CysG, siroheme synthase, with an additional N-terminal domain and with additional oxidation and iron insertion activities.; GO: 0008168 methyltransferase activity, 0006779 porphyrin biosynthetic process.
Probab=50.35 E-value=11 Score=16.69 Aligned_cols=136 Identities=26% Similarity=0.320 Sum_probs=81.6
Q ss_pred CCCHHHHCCCCCCCEEEEEEC--------CCCCHHHHHHHHCCCCCCCCCCCCCCEEEEEE---------------ECCC
Q ss_conf 226566223880208999966--------96326889885202777653026896699996---------------1588
Q gi|254780869|r 280 FLSDESFGLYPREQLIVIATG--------SQGEPRSALAQLSRGEMRNVKLAEKDTVIFSS---------------RAIP 336 (559)
Q Consensus 280 ~i~~~~~~~~p~~~~~ii~TG--------sqge~~a~l~ria~~~~~~i~l~~~D~vI~ss---------------~~ip 336 (559)
+++++-++..| +++-+|-.| +|.|-+.-|-+.|+.-.+=++||-||=+||.- ..||
T Consensus 35 Lv~~~iL~~~~-~~Ae~i~VGKr~g~h~~~Q~~IN~lLV~~A~~G~~VVRLKGGDP~vFGRgGEE~~~L~~~GI~~EvvP 113 (242)
T TIGR01469 35 LVSPEILAYAP-EQAELIDVGKRPGHHSVKQEEINRLLVELAREGKKVVRLKGGDPFVFGRGGEEAEALAEAGIPFEVVP 113 (242)
T ss_pred CCCHHHHHHCC-CCCEEECCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEECCCCCCEECCHHHHHHHHHHCCCCEEEEC
T ss_conf 78989997178-87789714777962688978999999999853985899748998437856899999996689798738
Q ss_pred CHHHHHHHHHHHHHCCCEEEEECC-CCCCEECCCCCC-HHH--H-H-HHHHHCCCC-EEEEECCCHHHHHHHHHHHHHCC
Q ss_conf 617789999976510311343035-666413157889-789--9-9-999754953-99970457799999998787447
Q gi|254780869|r 337 GNEVAIGHIKNRLVEQGVRVIAED-AECPVHVSGHPY-PND--L-K-RMYQWIRPQ-VLVAIHGEPLHLVAHKELALQEG 409 (559)
Q Consensus 337 GnE~~~~~~~n~l~~~g~~vi~~~-~~~~iH~SGHa~-~ed--l-~-~li~~ikPk-~~IPvHGe~rhl~~h~~la~~~g 409 (559)
|=..+++- ....|.=+.+=+ .....+++||-. .++ + . .+-++.+.. -++=-.|-++.-.--++| .+.|
T Consensus 114 GvTsA~Aa----~a~aGiPlThR~~~~s~~f~TGh~~~~~~~~~~~~~W~~lA~~~~Tlv~yMG~~~l~~I~~~L-i~~G 188 (242)
T TIGR01469 114 GVTSAIAA----AAYAGIPLTHRGLARSVTFVTGHEAKEGEEALNEVDWEALAKGGGTLVIYMGVANLAEIAKEL-IEAG 188 (242)
T ss_pred CCCHHHHH----HHHCCCCCCCCCCCCCEEEEEEEEECCCCCCCCCCCHHHCCCCCCCEEEEHHHHHHHHHHHHH-HHCC
T ss_conf 81167789----985589954130217316885354068887767578667157677268862178899999999-9638
Q ss_pred CC---CEEEECCCEE
Q ss_conf 86---3155003227
Q gi|254780869|r 410 IA---CVPPVRNGKM 421 (559)
Q Consensus 410 v~---~i~l~~NGd~ 421 (559)
.+ -+-+++||-+
T Consensus 189 ~~~~tPvA~v~~At~ 203 (242)
T TIGR01469 189 RDPDTPVAVVEWATT 203 (242)
T ss_pred CCCCCCEEEEECCCC
T ss_conf 896782744432885
No 149
>TIGR00763 lon ATP-dependent protease La; InterPro: IPR004815 Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes . They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence . Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases . Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base . The geometric orientations of the catalytic residues are similar between families, despite different protein folds . The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) , . Peptidases are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry. Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. This signature defines the bacterial and eukaryotic lon proteases, which are ATP-dependent serine peptidases belonging to the MEROPS peptidase family S16 (lon protease family, clan SF). This family of sequences does not include the archaeal lon homologs, IPR004663 from INTERPRO. In the eukaryotes the majority of the proteins are located in the mitochondrial matrix , . In yeast, Pim1, is located in the mitochondrial matrix, is required for mitochondrial function, is constitutively expressed but is increased after thermal stress, suggesting that Pim1 may play a role in the heat shock response .; GO: 0004176 ATP-dependent peptidase activity, 0005524 ATP binding, 0006510 ATP-dependent proteolysis.
Probab=49.71 E-value=16 Score=15.56 Aligned_cols=104 Identities=20% Similarity=0.276 Sum_probs=62.4
Q ss_pred HHCCCC-EEEEECH--HHHHHHHHHHHHHHHHCCEEEEE---C-----------HHH-----HHHHHHHHHCCCCCCCCC
Q ss_conf 627983-9999414--77899999999998718869984---4-----------869-----999998874287677654
Q gi|254780869|r 222 KNAKGC-VLVTTFS--SSVSRIRSIIDIAEQIGRKIVLL---G-----------SSL-----KRVVSVAIDVGIIKKDQL 279 (559)
Q Consensus 222 ~~~~gr-Viv~~fa--sni~Ri~~i~~~a~~~~R~v~i~---G-----------rs~-----~~~~~~a~~~g~l~~~~~ 279 (559)
...+|. |+ ||. -=|+..--.--+|++.||+.|=. | |++ -|+++..++.|--||
T Consensus 445 ~~~~GpqIl--ClvGPPGVGKTSlg~SIA~ALnRkFvR~SlGG~~DeAEIrGHRRTYvGAMPGriiQ~lk~~~t~NP--- 519 (941)
T TIGR00763 445 GKMKGPQIL--CLVGPPGVGKTSLGKSIAKALNRKFVRFSLGGVRDEAEIRGHRRTYVGAMPGRIIQGLKKAKTKNP--- 519 (941)
T ss_pred CCCCCCEEE--EEECCCCCCHHHHHHHHHHHHCCEEEEEEECCCEEHHHCCCCCCCCCCCCHHHHHHHHHHCCCCCC---
T ss_conf 788887678--720726954222789999996880499952672203112786432034672578999876041588---
Q ss_pred CCCHHHHCCCCCCCEEEEEECCCCCHHHHHHHHCCC------CCCCCCCCCCCE--EE--EEE-----ECCCC
Q ss_conf 226566223880208999966963268898852027------776530268966--99--996-----15886
Q gi|254780869|r 280 FLSDESFGLYPREQLIVIATGSQGEPRSALAQLSRG------EMRNVKLAEKDT--VI--FSS-----RAIPG 337 (559)
Q Consensus 280 ~i~~~~~~~~p~~~~~ii~TGsqge~~a~l~ria~~------~~~~i~l~~~D~--vI--~ss-----~~ipG 337 (559)
++-.|++.++-- -.|.||.|-|||-=+.+- .|.|+.+ |=|+ |+ |=+ .+||+
T Consensus 520 l~LlDEIDK~~~------~~~~~GDPaSALLEvLDPEQN~~F~DHYldv-p~DLS~V~CyFi~TAN~~d~IP~ 585 (941)
T TIGR00763 520 LILLDEIDKIGL------KSSFRGDPASALLEVLDPEQNNAFSDHYLDV-PFDLSKVLCYFIATANSIDTIPR 585 (941)
T ss_pred EEEEEEEEEECC------CCCCCCCHHHHHHHHCCHHHCCCCCCCCCCC-CCCHHHHHHHEEECCCCCCCCCC
T ss_conf 068620220016------7886556378886412864360425530023-40042002100024475767772
No 150
>PRK07168 bifunctional uroporphyrinogen-III methyltransferase/uroporphyrinogen-III synthase; Reviewed
Probab=49.64 E-value=16 Score=15.56 Aligned_cols=118 Identities=19% Similarity=0.201 Sum_probs=55.7
Q ss_pred CEEEECCCCEEEEC------------CEEEEEEECCC---CCCCCCEEEEEECC---CEEEECCCCEECCCCCCCCCCCH
Q ss_conf 22551755557763------------48999985567---77765356798768---17998334024677665423898
Q gi|254780869|r 119 PCISFQAGDKVDVG------------AFSIESVRVNH---SIPETMALVIRSPV---GNIVHTGDWKLDDDAILGDVTDK 180 (559)
Q Consensus 119 ~~~~i~~~~~~~~g------------~~~v~~~~~~H---sip~a~~~~I~t~~---g~i~ytGDfk~d~~p~~g~~~d~ 180 (559)
....++.|+++-+| ++.++..|=-- .+|-..|+-+...+ .-.+-||--+ +...+.
T Consensus 82 ~VVRLKgGDP~VFGRggEE~~aL~~aGI~fEVVPGVTSa~AapAyAGIPLThR~~a~sv~vvTGh~~-------~~~~d~ 154 (474)
T PRK07168 82 IVVRLKGGDPSIFGRVGEEAETLAAANIPYEIVPGITSSIAASSYAGIPLTHRNYSNSVTLLTGHAK-------GPLTDH 154 (474)
T ss_pred EEEEEECCCCCCCCCHHHHHHHHHHCCCCEEEECCCCHHHHHHHHCCCCCCCCCCCCEEEEEECCCC-------CCCCCH
T ss_conf 2999737898530135999999998799679967965788999975997666885643999960378-------997653
Q ss_pred HHHHHCCCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHH-------------HH---CCCCEEEEECHHHHHHHHHHH
Q ss_conf 89986087882999963564578887777879999999998-------------62---798399994147789999999
Q gi|254780869|r 181 DSLCAIGNEGILALMCDSTNAMREGTCISEKGIKKNIYDIM-------------KN---AKGCVLVTTFSSSVSRIRSII 244 (559)
Q Consensus 181 ~~l~~~~~~gv~~Li~esT~~~~~~~~~sE~~v~~~i~~~~-------------~~---~~grViv~~fasni~Ri~~i~ 244 (559)
..+......+.+++++-..+ +..-..+++ .+ .++|++++| ++.+.+.+
T Consensus 155 ~~~~~~~~~~TLV~~MGv~~------------L~~I~~~Li~~G~~~dTPVAVV~~GTt~~Qrtv~gT----L~~Ia~~v 218 (474)
T PRK07168 155 GKYNSSHNSDTIAYYMGIKN------------LPTICKNLRQAGKKEDTPVAVIEWGTTGKQRVVTGT----LSTIVSIV 218 (474)
T ss_pred HHHHHHCCCCCEEEEECHHH------------HHHHHHHHHHCCCCCCCCEEEEECCCCCCCEEEEEE----HHHHHHHH
T ss_conf 44997177994899914646------------999999999669999982899976897572899999----99999999
Q ss_pred HHHHHHCCEEEEECH
Q ss_conf 999871886998448
Q gi|254780869|r 245 DIAEQIGRKIVLLGS 259 (559)
Q Consensus 245 ~~a~~~~R~v~i~Gr 259 (559)
+.+.-.+--+++.|.
T Consensus 219 ~~~~i~~PAvIVVGe 233 (474)
T PRK07168 219 KNENISNPSMTIVGD 233 (474)
T ss_pred HHCCCCCCEEEEECC
T ss_conf 973789982999884
No 151
>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA; InterPro: IPR011917 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain . The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyze ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarize the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site , , . The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis , , , , , . Proteins known to belong to this family are classified in several functional subfamilies depending on the substrate used (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes .; GO: 0005524 ATP binding, 0006869 lipid transport, 0009276 1-2nm peptidoglycan-based cell wall, 0016021 integral to membrane.
Probab=49.29 E-value=16 Score=15.52 Aligned_cols=28 Identities=11% Similarity=0.273 Sum_probs=15.3
Q ss_pred CEEEECCEEEEEEECCCCCCCCCEEEEE
Q ss_conf 5577634899998556777765356798
Q gi|254780869|r 127 DKVDVGAFSIESVRVNHSIPETMALVIR 154 (559)
Q Consensus 127 ~~~~~g~~~v~~~~~~Hsip~a~~~~I~ 154 (559)
-.++|-+.++++=+.+-.+.++..|.++
T Consensus 359 G~~eFR~v~~~Yp~~~~~aL~~i~l~~~ 386 (603)
T TIGR02203 359 GRVEFRNVTFRYPGRDRPALDSISLVVE 386 (603)
T ss_pred EEEEEEEEEEEECCCCHHHHCCCCCEEC
T ss_conf 2488876666537887241236665115
No 152
>TIGR02153 gatD_arch glutamyl-tRNA(Gln) amidotransferase, subunit D; InterPro: IPR011878 This peptide is found only in the Archaea. It is part of a heterodimer, with GatD (IPR004414 from INTERPRO), that acts as an amidotransferase on misacylated Glu-tRNA(Gln) to produce Gln-tRNA(Gln). The analogous amidotransferase found in bacteria is the GatABC system, although GatABC homologs in the Archaea appear to act instead on Asp-tRNA(Asn) .; GO: 0006450 regulation of translational fidelity.
Probab=49.18 E-value=16 Score=15.67 Aligned_cols=107 Identities=18% Similarity=0.148 Sum_probs=69.0
Q ss_pred CCCCHHHHHHHHHHC-----CCC-----EEEEECCCHHHHHHHHHHHHHCCCC-CEEEECCCEEEEECCC-CEEEEEE-E
Q ss_conf 788978999999754-----953-----9997045779999999878744786-3155003227897389-7045012-3
Q gi|254780869|r 369 GHPYPNDLKRMYQWI-----RPQ-----VLVAIHGEPLHLVAHKELALQEGIA-CVPPVRNGKMLRLFPD-PIEIIDE-V 435 (559)
Q Consensus 369 GHa~~edl~~li~~i-----kPk-----~~IPvHGe~rhl~~h~~la~~~gv~-~i~l~~NGd~i~l~~~-~~~i~~~-v 435 (559)
+|-||.|--+=++.+ -|+ -++=.--.||- +.=+++..+.+++ .+. +|.|.|| .+++.+. +
T Consensus 233 MHTSRRDAF~SiN~~PiA~~~~~~~~~~~~~~L~~dYr~-r~~~~le~~~~~EekVa------LvKfyPG~~p~il~~~~ 305 (413)
T TIGR02153 233 MHTSRRDAFQSINSIPIAKVDPKSLKEKEIEKLREDYRR-RGEKELELDDKFEEKVA------LVKFYPGLDPEILEFLV 305 (413)
T ss_pred CCCCCHHHHHCCCCCCCEEECCCCCCCCEEEEEEEEEEE-CCCCCCCCCCCCCCEEE------EEEECCCCCHHHHHHHH
T ss_conf 658810255315886535881777874407775421131-37765320688771379------99843898888999985
Q ss_pred ECC--CEEECCCCEECCCCHHHHHHHHHHHCCEEEEEEEECCCCCEEEC
Q ss_conf 213--20212331002550588999974038749999998389988005
Q gi|254780869|r 436 VHG--LFLKDGFLIGKFADLGIAKRRQLSFVGHLSVNVLLDNHYNIFGV 482 (559)
Q Consensus 436 ~~g--~~~vDG~~i~~~~~~vl~eR~~Ls~~GiV~V~viid~~~~l~~~ 482 (559)
..| -+.+.|.|+|.+.+.+|.-=++.-.+|+++|--.--=.|+..-+
T Consensus 306 d~GykGiViEGTGLGHvs~~~ip~i~ra~d~Gv~V~MTSQClyGRVNln 354 (413)
T TIGR02153 306 DKGYKGIVIEGTGLGHVSEDWIPSIKRATDDGVPVVMTSQCLYGRVNLN 354 (413)
T ss_pred CCCCEEEEEECCCCCCCHHHHHHHHHHHHHCCCEEEEEEEEECCEECCC
T ss_conf 1871599983378755523589999998758968999611433505075
No 153
>TIGR03335 F390_ftsA coenzyme F390 synthetase. This enzyme, characterized in Methanobacterium thermoautotrophicum and found in several other methanogens, modifies coenzyme F420 by ligation of AMP (or GMP) from ATP (or GTP). On F420, it activates an aromatic hydroxyl group, which is unusual chemistry for an adenylyltransferase. This enzyme name has been attached to numbers of uncharacterized genes likely to instead act as phenylacetate CoA ligase, based on proximity to predicted indolepyruvate ferredoxin oxidoreductase (1.2.7.8) genes. The enzyme acts during transient exposure of the organism to oxygen.
Probab=49.07 E-value=17 Score=15.49 Aligned_cols=10 Identities=0% Similarity=-0.074 Sum_probs=5.0
Q ss_pred ECCCEEEEEC
Q ss_conf 0032278973
Q gi|254780869|r 416 VRNGKMLRLF 425 (559)
Q Consensus 416 ~~NGd~i~l~ 425 (559)
-.-||+..+.
T Consensus 300 YRTgDi~~~~ 309 (445)
T TIGR03335 300 YDTEDTTVVI 309 (445)
T ss_pred EECCCCEEEE
T ss_conf 9738716984
No 154
>PRK07543 consensus
Probab=49.05 E-value=17 Score=15.49 Aligned_cols=21 Identities=14% Similarity=0.222 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHHCCEEEEE
Q ss_conf 899999999998718869984
Q gi|254780869|r 237 VSRIRSIIDIAEQIGRKIVLL 257 (559)
Q Consensus 237 i~Ri~~i~~~a~~~~R~v~i~ 257 (559)
-+.++.+.++|.+.+.-.++.
T Consensus 183 ~~~l~~l~~~~~~~~~v~iis 203 (400)
T PRK07543 183 RAELKALTDVLVKHPHVWVLT 203 (400)
T ss_pred HHHHHHHHHHHHHHCCCEECC
T ss_conf 167899999888753860313
No 155
>PRK13580 serine hydroxymethyltransferase; Provisional
Probab=48.65 E-value=8.1 Score=17.73 Aligned_cols=87 Identities=16% Similarity=0.215 Sum_probs=41.1
Q ss_pred HHHHHCCEEEEE--EEECCC------CCEEECCEEEEECCEECCCCHHHHHHHHHHHHHHHHHHH-HHCC-CCC----HH
Q ss_conf 974038749999--998389------988005379994012125665889999999999999852-2003-689----89
Q gi|254780869|r 459 RQLSFVGHLSVN--VLLDNH------YNIFGVPEIVDIGIPAYDGDGGKIHKLLLKTVITTVVDL-PQFR-RKD----LK 524 (559)
Q Consensus 459 ~~Ls~~GiV~V~--viid~~------~~l~~~P~I~~~Gl~~~~~~~~~l~~~i~~~i~~~i~~~-~~~~-~~d----~~ 524 (559)
+.|..-|+++=- +..|.+ |==++.|.+++||+ .+.+...+.+.+.+++.+.-... ...+ .++ +.
T Consensus 390 ~~Le~~gI~vNKN~iP~D~~~p~~~SGIRiGtpa~TtRGm--~e~em~~ia~~I~~~l~~~~~~~~~~~~~~~~~~~~~~ 467 (493)
T PRK13580 390 DALLDVGIVTNRNSIPSDPNGAWYTSGIRLGTPALTTLGM--GSDEMDEVAELIVKVLRNTTPGRTAEGGPSKAKYELPE 467 (493)
T ss_pred HHHHHCCEEEECCCCCCCCCCCCCCCCCEECCHHHHHCCC--CHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCH
T ss_conf 9998779387168898999889888641116666761899--98999999999999995524233555543212345789
Q ss_pred HHHHHHHHHHHHHHHHHHCCCCEE
Q ss_conf 999999999999999982888678
Q gi|254780869|r 525 LLRESISSALRSLLKKVWGKKPLV 548 (559)
Q Consensus 525 ~lk~~ir~~irk~~~k~~~KkP~V 548 (559)
.+.+++|..|+.++ .+|-..|.+
T Consensus 468 ~~~~~vr~~V~~L~-~~FPlYp~l 490 (493)
T PRK13580 468 GIAQEVRARVAELL-ARFPLYPEI 490 (493)
T ss_pred HHHHHHHHHHHHHH-HHCCCCCCC
T ss_conf 99999999999999-848999988
No 156
>PRK07366 succinyldiaminopimelate transaminase; Validated
Probab=48.56 E-value=17 Score=15.44 Aligned_cols=28 Identities=11% Similarity=0.255 Sum_probs=19.8
Q ss_pred CCCEEEEECHHH-------HHHHHHHHHHHHHHCC
Q ss_conf 983999941477-------8999999999987188
Q gi|254780869|r 225 KGCVLVTTFSSS-------VSRIRSIIDIAEQIGR 252 (559)
Q Consensus 225 ~grViv~~fasn-------i~Ri~~i~~~a~~~~R 252 (559)
+-++++-|+.+| -+++++++++|+++|-
T Consensus 165 ~tk~iil~~P~NPTG~v~s~~~l~~i~~~a~~~~i 199 (388)
T PRK07366 165 QARLMVLSYPHNPTTAIAPLSFFQEAVAFCQQHDL 199 (388)
T ss_pred CCCEEEECCCCCCCCEEEEHHHHHHHHHHHHHCCE
T ss_conf 28299985898984668038888889998740550
No 157
>COG0007 CysG Uroporphyrinogen-III methylase [Coenzyme metabolism]
Probab=47.74 E-value=17 Score=15.35 Aligned_cols=31 Identities=35% Similarity=0.457 Sum_probs=20.2
Q ss_pred CCCCHHHHHHHHCCCCCCCCCCCCCCEEEEE
Q ss_conf 9632688988520277765302689669999
Q gi|254780869|r 301 SQGEPRSALAQLSRGEMRNVKLAEKDTVIFS 331 (559)
Q Consensus 301 sqge~~a~l~ria~~~~~~i~l~~~D~vI~s 331 (559)
.|.|....|-+.|....+-++|+.||-+||.
T Consensus 66 ~q~eIn~~lv~~a~~G~~VVRLKgGDP~iFG 96 (244)
T COG0007 66 PQDEINALLVELAREGKRVVRLKGGDPYIFG 96 (244)
T ss_pred CHHHHHHHHHHHHHCCCEEEEECCCCCCEEC
T ss_conf 9899999999998659969996079988336
No 158
>PRK07309 aromatic amino acid aminotransferase; Validated
Probab=47.66 E-value=17 Score=15.35 Aligned_cols=37 Identities=5% Similarity=0.174 Sum_probs=24.3
Q ss_pred HHHHHHHC--CCCEEEEECHHH-------HHHHHHHHHHHHHHCCE
Q ss_conf 99998627--983999941477-------89999999999871886
Q gi|254780869|r 217 IYDIMKNA--KGCVLVTTFSSS-------VSRIRSIIDIAEQIGRK 253 (559)
Q Consensus 217 i~~~~~~~--~grViv~~fasn-------i~Ri~~i~~~a~~~~R~ 253 (559)
+++.+... +-+.++-|+.+| -+++++++++|++++--
T Consensus 156 le~~~~~~~~k~k~lil~~P~NPtG~v~s~e~l~~i~~la~~~~v~ 201 (390)
T PRK07309 156 LEKAILEQGDKLKAVILNYPANPTGVTYSREQIKALAEVLKKYDIF 201 (390)
T ss_pred HHHHHHHCCCCEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHCCEE
T ss_conf 9999874888749999789989988878999999999999768989
No 159
>PRK09461 ansA cytoplasmic asparaginase I; Provisional
Probab=47.49 E-value=17 Score=15.33 Aligned_cols=37 Identities=22% Similarity=0.212 Sum_probs=25.1
Q ss_pred HHHHHHCCCEEEEECCCCCC---CCCHHHHHHHCCCCEEC
Q ss_conf 87664124689960543012---16078889862997792
Q gi|254780869|r 61 IMKERKNLMAIFITHAHEDH---YGALHDLWSFLHVPVYA 97 (559)
Q Consensus 61 l~~~~~~i~~i~iTH~H~DH---iGalp~l~~~~~~pIY~ 97 (559)
++++.++.+|++||||-.-= -.+|.++++.++.||--
T Consensus 75 I~~~~~~~dG~VVtHGTDTm~~TA~aLs~~l~~l~kPVVl 114 (335)
T PRK09461 75 IKANYDDYDGFVILHGTDTMAYTASALSFMLENLGKPVIV 114 (335)
T ss_pred HHHHHHCCCEEEEECCCCHHHHHHHHHHHHHHCCCCCEEE
T ss_conf 9988725986999537440999999999997189987798
No 160
>PRK08008 caiC putative crotonobetaine/carnitine-CoA ligase; Validated
Probab=47.48 E-value=17 Score=15.33 Aligned_cols=52 Identities=12% Similarity=0.082 Sum_probs=29.3
Q ss_pred ECCCEEEEECCC-CEEEEEEEECCCEEECCCCEECCCCHHHHHHHHHHHCCEEEEEEE
Q ss_conf 003227897389-704501232132021233100255058899997403874999999
Q gi|254780869|r 416 VRNGKMLRLFPD-PIEIIDEVVHGLFLKDGFLIGKFADLGIAKRRQLSFVGHLSVNVL 472 (559)
Q Consensus 416 ~~NGd~i~l~~~-~~~i~~~v~~g~~~vDG~~i~~~~~~vl~eR~~Ls~~GiV~V~vi 472 (559)
..-||+..++++ ...+.++.+ .-+-+.|..+. ..+. |+..++..++.-+.|+
T Consensus 400 ~~TGDlg~~d~dG~l~~~GR~d-d~Ik~~G~~V~-p~EI---E~~l~~~p~V~eaaVv 452 (517)
T PRK08008 400 LHTGDTGYRDEEGFFYFVDRRC-NMIKRGGENVS-CVEL---ENIIASHPKIQDIVVV 452 (517)
T ss_pred CCCCCEEEECCCCCEEECCCCE-EEEEECCEEEC-HHHH---HHHHHHCCCCCEEEEE
T ss_conf 8779769999999889773554-18998999988-8999---9999849982479999
No 161
>TIGR01143 murF UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase; InterPro: IPR005863 The bacterial cell wall provides strength and rigidity to counteract internal osmotic pressure, and protection against the environment. The peptidoglycan layer gives the cell wall its strength, and helps maintain the overall shape of the cell. The basic peptidoglycan structure of both Gram-positive and Gram-negative bacteria is comprised of a sheet of glycan chains connected by short cross-linking polypeptides. Biosynthesis of peptidoglycan is a multi-step (11-12 steps) process comprising three main stages: (1) formation of UDP-N-acetylmuramic acid (UDPMurNAc) from N-acetylglucosamine (GlcNAc). (2) addition of a short polypeptide chain to the UDPMurNAc. (3) addition of a second GlcNAc to the disaccharide-pentapeptide building block and transport of this unit through the cytoplasmic membrane and incorporation into the growing peptidoglycan layer. Stage two involves four key Mur ligase enzymes: MurC (6.3.2.8 from EC) , MurD (6.3.2.9 from EC) , MurE (6.3.2.13 from EC) and MurF (6.3.2.10 from EC) . These four Mur ligases are responsible for the successive additions of L-alanine, D-glutamate, meso-diaminopimelate or L-lysine, and D-alanyl-D-alanine to UDP-N-acetylmuramic acid. All four Mur ligases are topologically similar to one another, even though they display low sequence identity. They are each composed of three domains: an N-terminal Rossmann-fold domain responsible for binding the UDPMurNAc substrate; a central domain (similar to ATP-binding domains of several ATPases and GTPases); and a C-terminal domain (similar to dihydrofolate reductase fold) that appears to be associated with binding the incoming amino acid. The conserved sequence motifs found in the four Mur enzymes also map to other members of the Mur ligase family, including folylpolyglutamate synthetase, cyanophycin synthetase and the capB enzyme from Bacillales . This entry represents UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase (MurF, 6.3.2.15 from EC), which is required to catalyze the final step in the synthesis of the cytoplasmic precursor of the bacterial cell wall peptidoglycan. ATP + UDP-N-acetylmuramoyl-L-alanyl-D-glutamyl-meso-2,6-diaminoheptanedioate + D-alanyl-D-alanine = ADP + phosphate + UDP-N-acetylmuramoyl-L-alanyl-D-glutamyl-6-carboxy-L-lysyl-D-alanyl-D-alanine.. The crystal structure of the MurF apo-enzyme has been determined and refined to 2.3 A resolution. It contains three consecutive open alpha/beta-sheet domains. The topology of the N-terminal domain of MurF is unique, while its central and C-terminal domains exhibit similar mononucleotide and dinucleotide-binding folds to MurD. The apo-enzyme of MurF crystal structure reveals an open conformation with the three domains juxtaposed in a crescent-like arrangement creating a wide-open space where substrates are expected to bind. As such, catalysis is not feasible and significant domain closure is expected upon substrate binding . ; GO: 0005524 ATP binding, 0008766 UDP-N-acetylmuramoylalanyl-D-glutamyl-26-diaminopimelate-D-alanyl-D-alanine ligase activity, 0008360 regulation of cell shape, 0009252 peptidoglycan biosynthetic process, 0009273 peptidoglycan-based cell wall biogenesis, 0051301 cell division, 0005737 cytoplasm.
Probab=47.34 E-value=18 Score=15.31 Aligned_cols=206 Identities=19% Similarity=0.301 Sum_probs=114.0
Q ss_pred CCC-CCCCCEEEEEEECCCCCCEEEEEECCCCCCCCCCCCEEEECCCHHHHHHHHHCCCEEEEECCCCCCCCC---HHHH
Q ss_conf 686-834660699995177786489997767678887675028707957987664124689960543012160---7888
Q gi|254780869|r 12 GGV-GEIGMNMALYGYGSPSSRKWIMIDCGVSFPKDDLPGVDLVFPDITFIMKERKNLMAIFITHAHEDHYGA---LHDL 87 (559)
Q Consensus 12 GG~-~eiG~N~~~~~~~~~~~~~~iiiD~G~~fp~~~~~gid~iiPd~~~l~~~~~~i~~i~iTH~H~DHiGa---lp~l 87 (559)
|=. .|||==++++.... +.|+.++..|++-|.+ +.+|-+.. +++..+|||-+.-|.+. +.-+
T Consensus 121 GN~Nn~iGlPltlL~~~~--~~~~aV~EmG~s~~GE-----------I~~L~~i~-~P~ia~itNi~~AHl~~F~~Fgs~ 186 (462)
T TIGR01143 121 GNFNNEIGLPLTLLRATE--DHDYAVLEMGASHPGE-----------IAYLAEIA-KPDIALITNIGEAHLEGFGDFGSL 186 (462)
T ss_pred CCCCCCHHHHHHHHCCCC--CCCEEEEEECCCCCCC-----------HHHHHHHH-CCCEEEEECCHHHHHHCCCCCCHH
T ss_conf 876761356788750788--8805999843898873-----------78999861-998699917047876115787538
Q ss_pred ---HHHCCCCEECCH--HHHHHHHH---HHHHCCCCCCCCEEEECCCCEEEE--CC--EEEEEEECCCCCCCCCEEEEEE
Q ss_conf ---986299779299--99999999---998548865562255175555776--34--8999985567777653567987
Q gi|254780869|r 88 ---WSFLHVPVYASP--FAIGLLEA---KRVYERVSKKIPCISFQAGDKVDV--GA--FSIESVRVNHSIPETMALVIRS 155 (559)
Q Consensus 88 ---~~~~~~pIY~s~--~t~~li~~---~~~~~~~~~~~~~~~i~~~~~~~~--g~--~~v~~~~~~Hsip~a~~~~I~t 155 (559)
.+. +..||..- -..+++-. .+... ..........+.+.+ ++ -.+.+..+..+.-+ .+|.+.+
T Consensus 187 ~~Ia~a-K~EI~~~~~~~~~a~~n~d~~~~~~~----~~~~~~~~~~~~~~Fg~~~~~~d~~~~~~~~~~~g-~~f~~~~ 260 (462)
T TIGR01143 187 EGIAEA-KGEILQGLKENGIAVINADDPALAKF----KKRLKILNKAKVLSFGLEGKYADVSAEDVSLSELG-TGFTLVT 260 (462)
T ss_pred HHHHHH-HHHHHHCCCCCCEEEECCCCHHHHHH----HHHCCCCCCCCEEEECCCCCCCCEEEECCEECCCC-CEEEEEE
T ss_conf 999999-99997078977589853525688999----98411157864788147776343688432121533-3589986
Q ss_pred CCCEEEECCCCEECCCC-CCCCCCC-HHHHHHCCCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHCCCC------
Q ss_conf 68179983340246776-6542389-889986087882999963564578887777879999999998627983------
Q gi|254780869|r 156 PVGNIVHTGDWKLDDDA-ILGDVTD-KDSLCAIGNEGILALMCDSTNAMREGTCISEKGIKKNIYDIMKNAKGC------ 227 (559)
Q Consensus 156 ~~g~i~ytGDfk~d~~p-~~g~~~d-~~~l~~~~~~gv~~Li~esT~~~~~~~~~sE~~v~~~i~~~~~~~~gr------ 227 (559)
+++.+-+ .-| +.|+..+ .+.++.+ .+++ .-..+...+.+.+.++- -.+||
T Consensus 261 ~~~~~~v-------~LP~~~G~h~n~~NalaA~----Ala~----------~lG~~~~~~~~gL~~~~-~~~gR~~~~~~ 318 (462)
T TIGR01143 261 PGGEIEV-------ELPILLGRHPNVENALAAA----ALAL----------ALGLPLEEIAEGLSELK-PVKGRLEVIQT 318 (462)
T ss_pred CCCEEEE-------EECCCCCCHHHHHHHHHHH----HHHH----------HHCCCHHHHHHHHHHCC-CCCCCEEEEEE
T ss_conf 3708999-------8311208818899999999----9999----------80988889998976427-88765078986
Q ss_pred -----EEEEECHHHHHHHHHHHHHHHHHC------CEEEEECH
Q ss_conf -----999941477899999999998718------86998448
Q gi|254780869|r 228 -----VLVTTFSSSVSRIRSIIDIAEQIG------RKIVLLGS 259 (559)
Q Consensus 228 -----Viv~~fasni~Ri~~i~~~a~~~~------R~v~i~Gr 259 (559)
||==||.-|.+.++..+++..... |++.++|.
T Consensus 319 ~~g~~~IdD~YNAnp~Sm~AAl~~L~~~~~~~E~g~~~~VLG~ 361 (462)
T TIGR01143 319 KKGLTLIDDTYNANPDSMRAALDALARFPGKGEVGKKILVLGD 361 (462)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCEEEEECC
T ss_conf 4874898441359889999999996138888863546899838
No 162
>COG0112 GlyA Glycine/serine hydroxymethyltransferase [Amino acid transport and metabolism]
Probab=47.32 E-value=11 Score=16.68 Aligned_cols=48 Identities=13% Similarity=0.142 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHHHCCCCEEEEECHH--HHHHHHHHHHHHHHHCCEEEEE
Q ss_conf 87999999999862798399994147--7899999999998718869984
Q gi|254780869|r 210 EKGIKKNIYDIMKNAKGCVLVTTFSS--SVSRIRSIIDIAEQIGRKIVLL 257 (559)
Q Consensus 210 E~~v~~~i~~~~~~~~grViv~~fas--ni~Ri~~i~~~a~~~~R~v~i~ 257 (559)
+.-=.+.++++.++.+=++||+-+|. -..-...+-++|.+.|-.+..+
T Consensus 151 ~~IDyD~~~k~a~e~kPKlii~G~SaY~r~id~~~~reIad~VGA~L~~D 200 (413)
T COG0112 151 GLIDYDEVEKLAKEVKPKLIIAGGSAYSRPIDFKRFREIADEVGAYLMVD 200 (413)
T ss_pred CCCCHHHHHHHHHHHCCCEEEECCCCCCCCCCHHHHHHHHHHHCCEEEEH
T ss_conf 75179999999998499789977603554467899999998719367721
No 163
>PRK00950 histidinol-phosphate aminotransferase; Validated
Probab=47.21 E-value=18 Score=15.30 Aligned_cols=14 Identities=14% Similarity=0.316 Sum_probs=6.9
Q ss_pred CCHHHHHHHHHHHH
Q ss_conf 66588999999999
Q gi|254780869|r 495 GDGGKIHKLLLKTV 508 (559)
Q Consensus 495 ~~~~~l~~~i~~~i 508 (559)
++.+.+++.+++.+
T Consensus 355 ~en~~ll~al~~il 368 (369)
T PRK00950 355 EENERFLEILKEIV 368 (369)
T ss_pred HHHHHHHHHHHHHH
T ss_conf 99999999999985
No 164
>PRK13034 serine hydroxymethyltransferase; Reviewed
Probab=47.01 E-value=18 Score=15.28 Aligned_cols=73 Identities=15% Similarity=0.146 Sum_probs=36.7
Q ss_pred HHHHHHCCEEEEE--EEECC------CCCEEECCEEEEECCEECCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHH
Q ss_conf 9974038749999--99838------998800537999401212566588999999999999985220036898999999
Q gi|254780869|r 458 RRQLSFVGHLSVN--VLLDN------HYNIFGVPEIVDIGIPAYDGDGGKIHKLLLKTVITTVVDLPQFRRKDLKLLRES 529 (559)
Q Consensus 458 R~~Ls~~GiV~V~--viid~------~~~l~~~P~I~~~Gl~~~~~~~~~l~~~i~~~i~~~i~~~~~~~~~d~~~lk~~ 529 (559)
-+.|...|+.+=- +..|. .|==++.|.+++||+- +.+...+.+.+. +.+... ...++.+..++
T Consensus 337 ~~~L~~~gI~~Nkn~iP~D~~~p~~~sGiRiGt~a~TtRG~~--e~em~~ia~~I~----~vl~~~---~~~~d~~~~~~ 407 (422)
T PRK13034 337 EQALERAGITVNKNGIPFDPEKPFVTSGIRIGTPAGTTRGFG--AAEFREIAGWIL----DVLDAL---RANGDAAVEQR 407 (422)
T ss_pred HHHHHHCCEEECCCCCCCCCCCCCCCCCEEECCHHHHHCCCC--HHHHHHHHHHHH----HHHHHC---CCCCCHHHHHH
T ss_conf 999998395866786889998998898126677889838998--899999999999----999734---67886999999
Q ss_pred HHHHHHHHHH
Q ss_conf 9999999999
Q gi|254780869|r 530 ISSALRSLLK 539 (559)
Q Consensus 530 ir~~irk~~~ 539 (559)
+|+.|+.++.
T Consensus 408 i~~~V~~L~~ 417 (422)
T PRK13034 408 VRKEVFALCA 417 (422)
T ss_pred HHHHHHHHHH
T ss_conf 9999999998
No 165
>PRK06450 threonine synthase; Validated
Probab=46.85 E-value=18 Score=15.26 Aligned_cols=75 Identities=21% Similarity=0.310 Sum_probs=33.5
Q ss_pred HCCCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECHHHHHHHHHHHHHHHHHCCEEEEECHHHHHH
Q ss_conf 60878829999635645788877778799999999986279839999414778999999999987188699844869999
Q gi|254780869|r 185 AIGNEGILALMCDSTNAMREGTCISEKGIKKNIYDIMKNAKGCVLVTTFSSSVSRIRSIIDIAEQIGRKIVLLGSSLKRV 264 (559)
Q Consensus 185 ~~~~~gv~~Li~esT~~~~~~~~~sE~~v~~~i~~~~~~~~grViv~~fasni~Ri~~i~~~a~~~~R~v~i~Grs~~~~ 264 (559)
+..+.|+..+++.||- +.+ .. =+.......-+-.|+++.-+ ...++.++ +.+|=+|+.+.-+....
T Consensus 89 ~a~~~G~~~vv~aSsG--N~g-----~s--lAayaa~~Gi~~~I~vP~~~-~~~K~~~~----~~yGA~vv~v~g~~dd~ 154 (336)
T PRK06450 89 YLADRGIKEISEDSSG--NAG-----AS--IAAYGAAAGIKVKIFVPETA-SGGKLKQI----EAYGAEVIKVEGSRDDV 154 (336)
T ss_pred HHHHHCCCEEEEECCH--HHH-----HH--HHHHHHHCCCCEEEECCCCC-CHHHHHHH----HHCCCEEEEECCCHHHH
T ss_conf 9998098845763851--999-----99--99999984996899826889-99999999----97699999979989999
Q ss_pred HHHHHHCCC
Q ss_conf 998874287
Q gi|254780869|r 265 VSVAIDVGI 273 (559)
Q Consensus 265 ~~~a~~~g~ 273 (559)
...+.+.|.
T Consensus 155 ~~~a~~~g~ 163 (336)
T PRK06450 155 QKAAENSGY 163 (336)
T ss_pred HHHHHHHCC
T ss_conf 999986287
No 166
>PRK06849 hypothetical protein; Provisional
Probab=46.51 E-value=18 Score=15.23 Aligned_cols=105 Identities=12% Similarity=0.107 Sum_probs=55.6
Q ss_pred HHHHHCCCCCCEEEEECCCCCC-------------CCCCCCCHHHHHHHHHHHHHHCCCCEEEEECHHHHHHHHHHHHHH
Q ss_conf 8998608788299996356457-------------888777787999999999862798399994147789999999999
Q gi|254780869|r 181 DSLCAIGNEGILALMCDSTNAM-------------REGTCISEKGIKKNIYDIMKNAKGCVLVTTFSSSVSRIRSIIDIA 247 (559)
Q Consensus 181 ~~l~~~~~~gv~~Li~esT~~~-------------~~~~~~sE~~v~~~i~~~~~~~~grViv~~fasni~Ri~~i~~~a 247 (559)
+.-..++..|..+.++|+..-. .|.+........+.+.++++..+--++|++... +.-+....+.-
T Consensus 19 ~laR~l~~~Gh~V~~aD~~~~~l~r~Sr~v~~~~~vP~P~~d~~~y~~~Ll~Iv~~e~idl~IP~~ee-v~~~a~~~~~l 97 (387)
T PRK06849 19 QLARSFHNAGHTVILADSLKYPLSRFSRAVDGFYTIPSPKWDPNAYIQALLSIVKRHNIDLLIPTCEE-VFYLSLAKEEL 97 (387)
T ss_pred HHHHHHHHCCCEEEEECCCCCCCCCHHHCEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCEEEECCCH-HHHHHHHHHHC
T ss_conf 99999987899799984898775420000112798699978989999999999998389999977768-99998657644
Q ss_pred HHHCCEEEEECHHHH-------HHHHHHHHCCCCCCCCCCC-CHHHHC
Q ss_conf 871886998448699-------9999887428767765422-656622
Q gi|254780869|r 248 EQIGRKIVLLGSSLK-------RVVSVAIDVGIIKKDQLFL-SDESFG 287 (559)
Q Consensus 248 ~~~~R~v~i~Grs~~-------~~~~~a~~~g~l~~~~~~i-~~~~~~ 287 (559)
...- .++.-+-... +.++.|.++|.--|..-.+ +.+++.
T Consensus 98 ~~~~-~~~~~d~~~l~~LhdK~~F~~~a~~lGl~vP~T~~i~s~edv~ 144 (387)
T PRK06849 98 SAYC-HVFHFDFDLLLMLHNKFEFIQQARSLGLSAPKTYLITDPEAII 144 (387)
T ss_pred CCCC-CEECCCHHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCHHHHH
T ss_conf 7676-3765899999986448999999997499999889818999998
No 167
>KOG4180 consensus
Probab=46.35 E-value=9.4 Score=17.26 Aligned_cols=53 Identities=21% Similarity=0.233 Sum_probs=39.7
Q ss_pred EEECCCCCCCCCEEEEEECCCEEEECCC-CEECCCCCCCCCCCHHHHHHCCCCCCEEEE
Q ss_conf 9855677776535679876817998334-024677665423898899860878829999
Q gi|254780869|r 138 SVRVNHSIPETMALVIRSPVGNIVHTGD-WKLDDDAILGDVTDKDSLCAIGNEGILALM 195 (559)
Q Consensus 138 ~~~~~Hsip~a~~~~I~t~~g~i~ytGD-fk~d~~p~~g~~~d~~~l~~~~~~gv~~Li 195 (559)
-+..+|.++.+-++.=--++|+.++..- +.=|.+|+.|..+|.. +.+|.++|-
T Consensus 96 R~~lsq~i~waD~VisvGGDGTfL~Aasrv~~~~~PViGvNtDP~-----~Seg~lcL~ 149 (395)
T KOG4180 96 RNDLSQPIRWADMVISVGGDGTFLLAASRVIDDSKPVIGVNTDPT-----GSEGHLCLP 149 (395)
T ss_pred HHHCCCCCCHHHEEEEECCCCCEEEHHHHHHCCCCCEEEECCCCC-----CCCCEEECC
T ss_conf 533267576231799716863132100122216884455348987-----675437645
No 168
>COG2266 GTP:adenosylcobinamide-phosphate guanylyltransferase [Coenzyme metabolism]
Probab=46.31 E-value=18 Score=15.20 Aligned_cols=81 Identities=21% Similarity=0.277 Sum_probs=43.5
Q ss_pred CCEEEEEEECCCCHHHHHHHHHHHHHCCCEEEEECCCCCCEECCCCCCHHHHHHHHHHCC-CCEEEEECCCH---HHHHH
Q ss_conf 966999961588617789999976510311343035666413157889789999997549-53999704577---99999
Q gi|254780869|r 325 KDTVIFSSRAIPGNEVAIGHIKNRLVEQGVRVIAEDAECPVHVSGHPYPNDLKRMYQWIR-PQVLVAIHGEP---LHLVA 400 (559)
Q Consensus 325 ~D~vI~ss~~ipGnE~~~~~~~n~l~~~g~~vi~~~~~~~iH~SGHa~~edl~~li~~ik-Pk~~IPvHGe~---rhl~~ 400 (559)
+++++.-|+--|..+. .+...|++++. ++|-+|.+|+++.++.+. |=.++|.-=-+ -++..
T Consensus 42 d~i~v~isp~tp~t~~-------~~~~~gv~vi~--------tpG~GYv~Dl~~al~~l~~P~lvvsaDLp~l~~~~i~~ 106 (177)
T COG2266 42 DEIIVAISPHTPKTKE-------YLESVGVKVIE--------TPGEGYVEDLRFALESLGTPILVVSADLPFLNPSIIDS 106 (177)
T ss_pred CCEEEEECCCCHHHHH-------HHHHCCCEEEE--------CCCCCHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHH
T ss_conf 8389996799876999-------99735936997--------59987089999999744994599865534178899999
Q ss_pred HHHHHHHCCCCCEEEECCCE
Q ss_conf 99878744786315500322
Q gi|254780869|r 401 HKELALQEGIACVPPVRNGK 420 (559)
Q Consensus 401 h~~la~~~gv~~i~l~~NGd 420 (559)
-.+-+.+..++-+.+..-|.
T Consensus 107 vi~~~~~~~~p~~~~~~~G~ 126 (177)
T COG2266 107 VIDAAASVEVPIVTVVKAGR 126 (177)
T ss_pred HHHHHHHCCCCEEEEECCCC
T ss_conf 99998524675057311586
No 169
>PRK12817 flgG flagellar basal body rod protein FlgG; Reviewed
Probab=46.27 E-value=18 Score=15.20 Aligned_cols=43 Identities=16% Similarity=0.300 Sum_probs=30.1
Q ss_pred EECCEEEEEEECCCCCCCCCEEEEEECCCEEEEC--CCCEECCCC
Q ss_conf 7634899998556777765356798768179983--340246776
Q gi|254780869|r 130 DVGAFSIESVRVNHSIPETMALVIRSPVGNIVHT--GDWKLDDDA 172 (559)
Q Consensus 130 ~~g~~~v~~~~~~Hsip~a~~~~I~t~~g~i~yt--GDfk~d~~p 172 (559)
+-|.++-|--+.+=-|.|.-.|.+.+++|.+.|| |+|++|...
T Consensus 78 ~qG~l~~Tg~~lDlAI~G~GfF~V~~~~G~~~yTR~G~f~~d~~G 122 (261)
T PRK12817 78 QQGNLLTTGNKTDLAIDGEGFFRVIMPDGTYAYTRAGNFNIDSNG 122 (261)
T ss_pred CCCCEEECCCCCEEEECCCCEEEEECCCCCEEEEECCCEEECCCC
T ss_conf 887835369842389858847999838996768868864799999
No 170
>PRK12694 flgG flagellar basal body rod protein FlgG; Reviewed
Probab=46.21 E-value=17 Score=15.34 Aligned_cols=42 Identities=14% Similarity=0.199 Sum_probs=26.0
Q ss_pred ECCEEEEEEECCCCCCCCCEEEEEECCCEEEEC--CCCEECCCC
Q ss_conf 634899998556777765356798768179983--340246776
Q gi|254780869|r 131 VGAFSIESVRVNHSIPETMALVIRSPVGNIVHT--GDWKLDDDA 172 (559)
Q Consensus 131 ~g~~~v~~~~~~Hsip~a~~~~I~t~~g~i~yt--GDfk~d~~p 172 (559)
-|+++-|--+.+=.|-|.-.|.+.+|+|.+.|| |+|++|...
T Consensus 83 qG~l~~Tg~~lDlAI~G~GfF~V~~~~G~~~yTR~G~F~~d~~G 126 (260)
T PRK12694 83 QGNLQQTGNSKDVAINGQGFFQVLMPDGTTAYTRDGSFQTNAQG 126 (260)
T ss_pred CCCCEECCCCCEEEECCCCEEEEECCCCCEEEEECCCEEECCCC
T ss_conf 78713169831289858957888558995748876646899999
No 171
>PRK06108 aspartate aminotransferase; Provisional
Probab=45.98 E-value=18 Score=15.17 Aligned_cols=19 Identities=21% Similarity=0.207 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHCCEEE
Q ss_conf 8999999999987188699
Q gi|254780869|r 237 VSRIRSIIDIAEQIGRKIV 255 (559)
Q Consensus 237 i~Ri~~i~~~a~~~~R~v~ 255 (559)
-+++++++++|++++-.|+
T Consensus 177 ~e~l~~l~~la~~~~v~ii 195 (382)
T PRK06108 177 RDDQQAILAHCRRHGLWIV 195 (382)
T ss_pred HHHHHHHHHHHHCCCCEEE
T ss_conf 7889999998762697535
No 172
>pfam02875 Mur_ligase_C Mur ligase family, glutamate ligase domain. This family contains a number of related ligase enzymes which have EC numbers 6.3.2.*. This family includes: MurC, MurD, MurE, MurF, Mpl and FolC. MurC, MurD, Mure and MurF catalyse consecutive steps in the synthesis of peptidoglycan. Peptidoglycan consists of a sheet of two sugar derivatives, with one of these N-acetylmuramic acid attaching to a small pentapeptide. The pentapeptide is is made of L-alanine, D-glutamic acid, Meso-diaminopimelic acid and D-alanyl alanine. The peptide moiety is synthesized by successively adding these amino acids to UDP-N-acetylmuramic acid. MurC transfers the L-alanine, MurD transfers the D-glutamate, MurE transfers the diaminopimelic acid, and MurF transfers the D-alanyl alanine. This family also includes Folylpolyglutamate synthase that transfers glutamate to folylpolyglutamate.
Probab=45.78 E-value=19 Score=15.15 Aligned_cols=38 Identities=13% Similarity=0.439 Sum_probs=26.3
Q ss_pred HHHCCCCEEEEECHHHHHHHHHHHHHHHH--HCCEEEEEC
Q ss_conf 86279839999414778999999999987--188699844
Q gi|254780869|r 221 MKNAKGCVLVTTFSSSVSRIRSIIDIAEQ--IGRKIVLLG 258 (559)
Q Consensus 221 ~~~~~grViv~~fasni~Ri~~i~~~a~~--~~R~v~i~G 258 (559)
+...++..++--||.|-+-+..+++.++. .+|.+++.|
T Consensus 8 i~~~~~~~vi~DyaHnp~~~~a~l~~~~~~~~~r~i~V~G 47 (87)
T pfam02875 8 VGENNGVLVIDDYAHNPDALEAALQALKELFDGRLILVFG 47 (87)
T ss_pred EECCCCCEEEEECCCCHHHHHHHHHHHHHCCCCCEEEEEC
T ss_conf 8658997899967899699999999998626887899999
No 173
>COG0696 GpmI Phosphoglyceromutase [Carbohydrate transport and metabolism]
Probab=45.63 E-value=19 Score=15.13 Aligned_cols=255 Identities=19% Similarity=0.169 Sum_probs=120.5
Q ss_pred EECCCCCCCCCEEEEEECCCEEEECCCCEECCCCCCCCCCCHHHHH----HCC-CCCCEEEEECCCCCCCCCCCCCHHHH
Q ss_conf 8556777765356798768179983340246776654238988998----608-78829999635645788877778799
Q gi|254780869|r 139 VRVNHSIPETMALVIRSPVGNIVHTGDWKLDDDAILGDVTDKDSLC----AIG-NEGILALMCDSTNAMREGTCISEKGI 213 (559)
Q Consensus 139 ~~~~Hsip~a~~~~I~t~~g~i~ytGDfk~d~~p~~g~~~d~~~l~----~~~-~~gv~~Li~esT~~~~~~~~~sE~~v 213 (559)
-.|+|+..| .|+|+|++=-|+|..--.|...+-..|. +.- +.+.+.++.= .++|---|+.+-
T Consensus 62 SEVGHlnIG---------AGRivyq~l~rI~~aie~g~f~~n~~l~~~~~~v~~~~~~lHlmGl----~S~GGVHSh~~H 128 (509)
T COG0696 62 SEVGHLNIG---------AGRIVYQDLTRIDKAIEDGSFFENPALLNAIDEVKANGSALHLMGL----VSDGGVHSHIDH 128 (509)
T ss_pred CCCCCEEEE---------CCEEEECCCCHHHHHHHCCCCCCCHHHHHHHHHHHHCCCEEEEEEC----CCCCCCCCHHHH
T ss_conf 555614540---------3547643531455555407511168899999876404862799961----258854332899
Q ss_pred HHHHHHHHHHC-CCCEEEEECH--------HHHHHHHHHHHHHHHH--CCEEEEECH--HHHH-----HHHHHHHC---C
Q ss_conf 99999998627-9839999414--------7789999999999871--886998448--6999-----99988742---8
Q gi|254780869|r 214 KKNIYDIMKNA-KGCVLVTTFS--------SSVSRIRSIIDIAEQI--GRKIVLLGS--SLKR-----VVSVAIDV---G 272 (559)
Q Consensus 214 ~~~i~~~~~~~-~grViv~~fa--------sni~Ri~~i~~~a~~~--~R~v~i~Gr--s~~~-----~~~~a~~~---g 272 (559)
...+.++.... -..|++-+|. |=..-+.++...++++ +|---+.|| +|.| -++.|.+. +
T Consensus 129 l~ali~~a~k~g~~kV~~H~f~DGRD~~P~s~~~~le~l~~~~~~~g~~~iasi~GRYYaMDRD~rWdRve~Ay~a~~~~ 208 (509)
T COG0696 129 LLALIELAAKNGMKKVYLHAFLDGRDTAPRSALQYLEELEAKAKEYGNGRIASISGRYYAMDRDNRWDRVEKAYDALTYG 208 (509)
T ss_pred HHHHHHHHHHCCCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEEEEEEEECCCCCCCHHHHHHHHHHHHCC
T ss_conf 99999998766872899998647887786448999999998752248668999740011135332128999999999716
Q ss_pred C--CC-CCC-CCCCHHHHCCCCCCCEEEEEECCCCCHHHHHHHHCCCCCCCCCCCCCCEEEEEEECCCCHHHHHHHHHHH
Q ss_conf 7--67-765-4226566223880208999966963268898852027776530268966999961588617789999976
Q gi|254780869|r 273 I--IK-KDQ-LFLSDESFGLYPREQLIVIATGSQGEPRSALAQLSRGEMRNVKLAEKDTVIFSSRAIPGNEVAIGHIKNR 348 (559)
Q Consensus 273 ~--l~-~~~-~~i~~~~~~~~p~~~~~ii~TGsqge~~a~l~ria~~~~~~i~l~~~D~vI~ss~~ipGnE~~~~~~~n~ 348 (559)
- .. ..+ ..+...-.....++-+. -|.-.+ + +.-.++++|.|||--.. |---+...+++
T Consensus 209 ~~~~~~~~~~~~~~~~Y~~~~tDEFv~--p~~i~~------------~-~~~~i~d~DsvIf~NFR-~DRarQl~~~l-- 270 (509)
T COG0696 209 EGEFTANSAVEAVQASYARGITDEFVK--PTVIYG------------E-PVAAIEDGDSVIFFNFR-PDRARQLTRAL-- 270 (509)
T ss_pred CCCCCCCCHHHHHHHHHHCCCCCCCCC--CEEECC------------C-CCCCCCCCCEEEEECCC-HHHHHHHHHHH--
T ss_conf 665555799999999985588754104--346447------------6-22433689838982048-06999999985--
Q ss_pred HHCCCEEEEECC---CCCCEECCCCCCHHHHHHHHHHCCCCEEEEECCCHHHHHHH--HHHHHHCCCCCEEEECCCEEEE
Q ss_conf 510311343035---66641315788978999999754953999704577999999--9878744786315500322789
Q gi|254780869|r 349 LVEQGVRVIAED---AECPVHVSGHPYPNDLKRMYQWIRPQVLVAIHGEPLHLVAH--KELALQEGIACVPPVRNGKMLR 423 (559)
Q Consensus 349 l~~~g~~vi~~~---~~~~iH~SGHa~~edl~~li~~ikPk~~IPvHGe~rhl~~h--~~la~~~gv~~i~l~~NGd~i~ 423 (559)
......-+.-+ ....++++ -.+.+++. +.-+..|.-+--+-||++--... ..+|....++++...-||=.=+
T Consensus 271 -~~~~f~gF~r~~~~~~~~~vtm-t~Y~~~~~-~~vaF~p~~i~NtlgEv~~~~gl~QlRiAETEKYAHVTfFfnGG~E~ 347 (509)
T COG0696 271 -TNDDFDGFSRDKKVPKNDFVTM-TEYDGSDP-LPVAFPPENLKNTLGEVLSKHGLTQLRIAETEKYAHVTFFFNGGVEE 347 (509)
T ss_pred -CCCCCCCCCCCCCCCCCCEEEE-EECCCCCC-CCEECCCCCCCCCHHHHHHHCCCHHHHHHHHCCCCCEEEEECCCCCC
T ss_conf -0233244671224666755887-76378777-62223652434217999986681454222204566168985586145
Q ss_pred ECCC
Q ss_conf 7389
Q gi|254780869|r 424 LFPD 427 (559)
Q Consensus 424 l~~~ 427 (559)
-.++
T Consensus 348 ~~~~ 351 (509)
T COG0696 348 PFKG 351 (509)
T ss_pred CCCC
T ss_conf 6689
No 174
>TIGR01352 tonB_Cterm TonB family C-terminal domain; InterPro: IPR006260 The sequences in this set all contain a conserved C-terminal domain which is characteristic of TonB and is homologs. TonB is an energy-transducer for TonB-dependent receptors of Gram-negative bacteria . Most members are designated as TonB or TonB-related proteins, but a few represent the paralogous TolA protein. Several bacteria have up to four TonB paralogs. In nearly every case, a proline-rich repetitive region is found N-terminal to this domain; these low-complexity regions are highly divergent and cannot readily be aligned. The region is suggested to span the periplasm. Iron is essential for growth in both bacteria and mammals. Controlling the amount of free iron in solution is often used as a tactic by hosts to limit invasion of pathogenic microbes; binding iron tightly within protein molecules can accomplish this. Some bacteria express surface receptors to capture eukaryotic iron-binding compounds, while others have evolved siderophores to scavenge iron from iron-binding host proteins . The absence of free iron molecules in the surrounding environment triggers transcription of gene clusters that encode both siderophore-synthesis ezymes, and receptors that recognise iron-bound siderophores . An example of the latter is Escherichia coli fepA, which resides in the outer envelope and captures iron-bound enterobactin . To complete transport of bound iron across the inner membrane, a second receptor complex is needed. The major component of this is tonB, a 27kDa protein that facilitates energy transfer from the proton motive force to outer receptors. B-12 and colicin receptors also make use of the tonB system to drive active transport at the outer membrane. ; GO: 0008565 protein transporter activity, 0015031 protein transport, 0016020 membrane, 0030288 outer membrane-bounded periplasmic space.
Probab=45.56 E-value=19 Score=15.13 Aligned_cols=34 Identities=18% Similarity=0.227 Sum_probs=26.8
Q ss_pred HHHHHHHCCEEEEEEEECCCCCEEECCEEEEECC
Q ss_conf 9997403874999999838998800537999401
Q gi|254780869|r 457 KRRQLSFVGHLSVNVLLDNHYNIFGVPEIVDIGI 490 (559)
Q Consensus 457 eR~~Ls~~GiV~V~viid~~~~l~~~P~I~~~Gl 490 (559)
+-+++..+|.|.|.+.+|.+|++..---..|-|-
T Consensus 6 ~a~~~~~~G~V~v~~~v~~~G~v~~~~v~~Ssg~ 39 (81)
T TIGR01352 6 RARRRGIEGTVVVRFTVDASGRVTSVRVLKSSGN 39 (81)
T ss_pred HHHHCCCCCEEEEEEEECCCCCEEEEEEECCCCC
T ss_conf 7881798656899998689983557888305798
No 175
>TIGR02199 rfaE_dom_II rfaE bifunctional protein, domain II; InterPro: IPR011914 RfaE is a protein involved in the biosynthesis of ADP-L-glycero-D-manno-heptose, a precursor for LPS inner core biosynthesis. RfaE is a bifunctional protein in Escherichia coli, and separate proteins in some other genome. Domain I (IPR011913 from INTERPRO) is suggested to act in D-glycero-D-manno-heptose 1-phosphate biosynthesis, while domain II (this family) adds ADP to yield ADP-D-glycero-D-manno-heptose .; GO: 0016773 phosphotransferase activity alcohol group as acceptor, 0016779 nucleotidyltransferase activity, 0005975 carbohydrate metabolic process.
Probab=45.02 E-value=19 Score=15.07 Aligned_cols=98 Identities=19% Similarity=0.282 Sum_probs=56.1
Q ss_pred HHHHHHHHCCEEEEECHH-------HHHHHHHHHHCCCCCCCCCCCCHHHHCCCCCCCEEEEEECCCCCHHHHHHHHCCC
Q ss_conf 999998718869984486-------9999998874287677654226566223880208999966963268898852027
Q gi|254780869|r 243 IIDIAEQIGRKIVLLGSS-------LKRVVSVAIDVGIIKKDQLFLSDESFGLYPREQLIVIATGSQGEPRSALAQLSRG 315 (559)
Q Consensus 243 i~~~a~~~~R~v~i~Grs-------~~~~~~~a~~~g~l~~~~~~i~~~~~~~~p~~~~~ii~TGsqge~~a~l~ria~~ 315 (559)
+.+.+++.|+||+++.== =.+|++.|+++| +.+|+ +=|
T Consensus 2 ~~~~~r~~g~kvVFTNGCFDiLH~GHV~YL~~Ar~LG--------------------D~LvV---------------GvN 46 (144)
T TIGR02199 2 LVAEARARGKKVVFTNGCFDILHAGHVSYLQQARALG--------------------DRLVV---------------GVN 46 (144)
T ss_pred CCHHHHHCCCCEEECCCCCCCCCCCHHHHHHHHHHHC--------------------CEEEE---------------EEC
T ss_conf 0037883789778517731010211376899999719--------------------86689---------------861
Q ss_pred CCCCCCCCCCCEEEEEEECCCCHHHHHHHHHHHHHCCCEEEEECCCCCCEECCCCCCHHHHHHHHHHCCCCEEEEECCCH
Q ss_conf 77653026896699996158861778999997651031134303566641315788978999999754953999704577
Q gi|254780869|r 316 EMRNVKLAEKDTVIFSSRAIPGNEVAIGHIKNRLVEQGVRVIAEDAECPVHVSGHPYPNDLKRMYQWIRPQVLVAIHGEP 395 (559)
Q Consensus 316 ~~~~i~l~~~D~vI~ss~~ipGnE~~~~~~~n~l~~~g~~vi~~~~~~~iH~SGHa~~edl~~li~~ikPk~~IPvHGe~ 395 (559)
.|.-++=-||+ .+||.. |..=+.++..|.--..=|+..+.. =.+||+.+||..++ =-|.|
T Consensus 47 SD~SV~RLKG~-----~RPi~~-e~~Ra~vLaaL~~VD~VV~F~EDT-------------P~~LI~~~~PdilV-KGGDY 106 (144)
T TIGR02199 47 SDASVKRLKGE-----TRPINS-EEDRAEVLAALSSVDYVVIFDEDT-------------PEELIEELKPDILV-KGGDY 106 (144)
T ss_pred CHHHHHCCCCC-----CCCCCC-HHHHHHHHHCCCCEEEEEECCCCC-------------HHHHHHHHCCCEEE-ECCCC
T ss_conf 70455305768-----989157-767899984478500378638989-------------68999862962785-04435
No 176
>PRK07683 aminotransferase A; Validated
Probab=44.80 E-value=19 Score=15.05 Aligned_cols=47 Identities=11% Similarity=0.294 Sum_probs=26.8
Q ss_pred CCCCCCHHHHHHHHHHHHHHCCCCEEEEECHHH-------HHHHHHHHHHHHHHCCEEE
Q ss_conf 887777879999999998627983999941477-------8999999999987188699
Q gi|254780869|r 204 EGTCISEKGIKKNIYDIMKNAKGCVLVTTFSSS-------VSRIRSIIDIAEQIGRKIV 255 (559)
Q Consensus 204 ~~~~~sE~~v~~~i~~~~~~~~grViv~~fasn-------i~Ri~~i~~~a~~~~R~v~ 255 (559)
.++......++ +.+.+ +-++++-|+.+| -++++.++++|++++--|+
T Consensus 145 ~~~~~d~~~le----~~~~~-~~k~iil~~P~NPtG~v~s~e~l~~i~~la~~~~i~ii 198 (387)
T PRK07683 145 TGFRLTAEALE----NAITE-KTRCVVLPYPSNPTGVTLSKEELKDIANVLKDKNIFVL 198 (387)
T ss_pred CCCCCCHHHHH----HHCCC-CCCEEEECCCCCCCCCCCCHHHHHHHHHHHHCCCCEEE
T ss_conf 78878999999----73552-57578647995989788789999999997613694475
No 177
>PRK12583 acyl-CoA synthetase; Provisional
Probab=44.62 E-value=19 Score=15.03 Aligned_cols=52 Identities=12% Similarity=0.222 Sum_probs=32.0
Q ss_pred ECCCEEEEECCC-CEEEEEEEECCCEEECCCCEECCCCHHHHHHHHHHHCCEEEEEEE
Q ss_conf 003227897389-704501232132021233100255058899997403874999999
Q gi|254780869|r 416 VRNGKMLRLFPD-PIEIIDEVVHGLFLKDGFLIGKFADLGIAKRRQLSFVGHLSVNVL 472 (559)
Q Consensus 416 ~~NGd~i~l~~~-~~~i~~~v~~g~~~vDG~~i~~~~~~vl~eR~~Ls~~GiV~V~vi 472 (559)
..-||+..++++ ...+.++.+ .-+-+.|..+.. .+. |...++..|+.-+.|+
T Consensus 430 ~~TGDlg~~d~dG~l~~~GR~~-d~Ik~~G~~V~p-~EI---E~~l~~hp~V~~aaVv 482 (558)
T PRK12583 430 MHTGDLATMDEQGYVRIVGRSK-DMIIRGGENIYP-REI---EEFLFTHPAVADVQVF 482 (558)
T ss_pred CCCCCEEEECCCCEEEEEEECC-CEEEECCEEECH-HHH---HHHHHHCCCCCEEEEE
T ss_conf 6569889987896199998666-889999999889-999---9999849980279999
No 178
>TIGR03506 FlgEFG_subfam fagellar hook-basal body proteins. This model encompasses three closely related flagellar proteins usually denoted FlgE, FlgF and FlgG. The names have often been mis-assigned, however. Three equivalog HMMs, TIGR02489, TIGR02490 and TIGR00488, respectively, separate the individual forms into three genome-context consistent groups. The major differences between these genes are architectural, with variable central sections between relatively conserved N- and C-terminal domains. More distantly related are two other flagellar apparatus familis, FlgC (TIGR01395) which consists of little else but the N-and C-terminal domains and FlgK (TIGR02492) with a substantial but different central domain.
Probab=44.61 E-value=19 Score=15.03 Aligned_cols=41 Identities=20% Similarity=0.388 Sum_probs=28.8
Q ss_pred CCEEEEEEECCCCCCCCCEEEEEECCCEEEEC--CCCEECCCC
Q ss_conf 34899998556777765356798768179983--340246776
Q gi|254780869|r 132 GAFSIESVRVNHSIPETMALVIRSPVGNIVHT--GDWKLDDDA 172 (559)
Q Consensus 132 g~~~v~~~~~~Hsip~a~~~~I~t~~g~i~yt--GDfk~d~~p 172 (559)
|.++-|--+.+=.|-|.-.|.+.+++|.+.|| |+|++|...
T Consensus 69 G~l~~Tg~~lDlAI~G~GfF~V~~~~G~~~yTR~G~F~~d~~G 111 (231)
T TIGR03506 69 GSLQTTGNPLDLAINGDGFFAVQTPDGSEAYTRAGSFQLDANG 111 (231)
T ss_pred CCEEECCCCCEEEECCCEEEEEECCCCCEEEEECCCEEECCCC
T ss_conf 8825668832189869638999889997848764537898999
No 179
>PRK09276 aspartate aminotransferase; Provisional
Probab=44.58 E-value=19 Score=15.02 Aligned_cols=32 Identities=9% Similarity=0.274 Sum_probs=20.4
Q ss_pred CCCEEEEECHHH-------HHHHHHHHHHHHHHCCEEEE
Q ss_conf 983999941477-------89999999999871886998
Q gi|254780869|r 225 KGCVLVTTFSSS-------VSRIRSIIDIAEQIGRKIVL 256 (559)
Q Consensus 225 ~grViv~~fasn-------i~Ri~~i~~~a~~~~R~v~i 256 (559)
+-++++-|+.+| -++++.++++|++++-.|+.
T Consensus 166 ~~k~iil~~P~NPTG~v~s~~~l~~l~~la~~~~i~ii~ 204 (385)
T PRK09276 166 KAKLMFINYPNNPTGAVADLEFFEKVVDFAKKYDIIVCH 204 (385)
T ss_pred CCEEEEECCCCCCCCCHHHHHHHHHHHHHHCCCCCEEEE
T ss_conf 672999899989855111188999998763255756975
No 180
>TIGR01238 D1pyr5carbox3 delta-1-pyrroline-5-carboxylate dehydrogenase; InterPro: IPR005933 The delta(1)-pyrroline-5-carboxylate synthetase (1.5.1.12 from EC) a mitochondrial inner membrane, ATP- and NADPH-dependent, bifunctional enzyme, catalyzes the reduction of glutamate to delta1-pyrroline-5-carboxylate, a critical step in the de novo biosynthesis of proline and ornithine. It is the rate-limiting enzyme in proline biosynthesis and is subject to feedback inhibition by proline. 1-pyrroline-5-carboxylate + NAD+ + H2O = L-glutamate + NADH This model represents one of several related branches of delta-1-pyrroline-5-carboxylate dehydrogenase. Members of this branch include the C-terminal domain of the PutA bifunctional proline dehydrogenase / delta-1-pyrroline-5-carboxylate dehydrogenase. ; GO: 0003842 1-pyrroline-5-carboxylate dehydrogenase activity, 0006561 proline biosynthetic process.
Probab=44.04 E-value=18 Score=15.25 Aligned_cols=216 Identities=13% Similarity=0.153 Sum_probs=103.1
Q ss_pred CEEEEEECC--CEEEECCCCEECCCCCCCCCCCHH-HHHH-CCC----C-CCEEEEECCC--CCCC-CCCCCCHHHHHHH
Q ss_conf 356798768--179983340246776654238988-9986-087----8-8299996356--4578-8877778799999
Q gi|254780869|r 149 MALVIRSPV--GNIVHTGDWKLDDDAILGDVTDKD-SLCA-IGN----E-GILALMCDST--NAMR-EGTCISEKGIKKN 216 (559)
Q Consensus 149 ~~~~I~t~~--g~i~ytGDfk~d~~p~~g~~~d~~-~l~~-~~~----~-gv~~Li~esT--~~~~-~~~~~sE~~v~~~ 216 (559)
.|=+++... +-++|||=- ... ++.+ +++ . -...||.|.. |+.- +....+|+.+.+-
T Consensus 249 vGaALTsd~ri~GV~FTGST------------evA~lin~~lA~R~d~pGrP~plIAETGG~NAMIVDStAL~EQVv~DV 316 (525)
T TIGR01238 249 VGAALTSDERIAGVIFTGST------------EVARLINKALAKREDAPGRPVPLIAETGGQNAMIVDSTALAEQVVADV 316 (525)
T ss_pred CCCCCCCCCCCCCEEEECCH------------HHHHHHHHHHHCCCCCCCCCEEEEECCCCCCCCEECCCCCHHHHHHHH
T ss_conf 00001561112420344727------------899999998850157888943677547886210122213504899999
Q ss_pred HHHHHHHCCCCEEEEECHHHHHHHHHHHHHHHHHCCEEEEECHHHHHHHHHHHH-CC-----CCC-CCCCCCCHHHHCCC
Q ss_conf 999986279839999414778999999999987188699844869999998874-28-----767-76542265662238
Q gi|254780869|r 217 IYDIMKNAKGCVLVTTFSSSVSRIRSIIDIAEQIGRKIVLLGSSLKRVVSVAID-VG-----IIK-KDQLFLSDESFGLY 289 (559)
Q Consensus 217 i~~~~~~~~grViv~~fasni~Ri~~i~~~a~~~~R~v~i~Grs~~~~~~~a~~-~g-----~l~-~~~~~i~~~~~~~~ 289 (559)
+...|.++-+|+ +| =|+.-+-+ .=..| |..+++=|++ +. .+. +-...|+.+...++
T Consensus 317 L~SAFdSAGQRC----SA---LRvLcvQe--dvADr--------~ltmi~GAM~El~vg~P~~l~TDvGPVIDaeAkq~l 379 (525)
T TIGR01238 317 LRSAFDSAGQRC----SA---LRVLCVQE--DVADR--------VLTMIKGAMDELKVGKPIRLTTDVGPVIDAEAKQNL 379 (525)
T ss_pred HHHHHHCCCCHH----HH---HHHHHHHH--HHHHH--------HHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHH
T ss_conf 976651314246----78---88987777--78778--------999987345552038886303676773067889999
Q ss_pred CCCCEEEEEECCCCCHHHHHHHHCCCCCC-----------CCCCCCCCEEEEEEECCCCHHHHHHHHHHHHHCCCEEEEE
Q ss_conf 80208999966963268898852027776-----------5302689669999615886177899999765103113430
Q gi|254780869|r 290 PREQLIVIATGSQGEPRSALAQLSRGEMR-----------NVKLAEKDTVIFSSRAIPGNEVAIGHIKNRLVEQGVRVIA 358 (559)
Q Consensus 290 p~~~~~ii~TGsqge~~a~l~ria~~~~~-----------~i~l~~~D~vI~ss~~ipGnE~~~~~~~n~l~~~g~~vi~ 358 (559)
....++|...... -..-++||= +-| ..--+|.|....-+++
T Consensus 380 ----------------l~HI~~M~~~~k~~~q~~~~~~eda~~~~hgtF------V~P-----~lfEld~~~eL~~EvF- 431 (525)
T TIGR01238 380 ----------------LAHIEKMKAKAKKVAQVKLDDDEDAVESRHGTF------VAP-----TLFELDDLDELKKEVF- 431 (525)
T ss_pred ----------------HHHHHHHHHHCHHHHHHHHHHHHHHHHHCCCCC------CCC-----HHHHCCCHHHHHHCCC-
T ss_conf ----------------999999887330034454420034576205884------661-----7751046577612258-
Q ss_pred CCCCCCEECCCCCCHHHHHHHHHHCCCCEEEEECCCH-HHHHHHHHHHHHCCCCCEEEECC--CEEEEEC
Q ss_conf 3566641315788978999999754953999704577-99999998787447863155003--2278973
Q gi|254780869|r 359 EDAECPVHVSGHPYPNDLKRMYQWIRPQVLVAIHGEP-LHLVAHKELALQEGIACVPPVRN--GKMLRLF 425 (559)
Q Consensus 359 ~~~~~~iH~SGHa~~edl~~li~~ikPk~~IPvHGe~-rhl~~h~~la~~~gv~~i~l~~N--Gd~i~l~ 425 (559)
++ =+|+== =.+++|..+++-||-+=+=-.||=| |--...+.+-...-+-|+.+=+| |-++=.-
T Consensus 432 -GP--vLHvVR-y~a~eLd~~vd~IN~~GygLT~GvHsRie~T~r~i~~~a~vGN~YvNRn~VGAVVGVQ 497 (525)
T TIGR01238 432 -GP--VLHVVR-YKADELDKVVDQINAKGYGLTLGVHSRIEETVRQIEKRAKVGNVYVNRNIVGAVVGVQ 497 (525)
T ss_pred -CC--EEEEEE-CCHHHHHHHHHHHCCCCCEEECCEECCCHHHHHHHHCEEEEEEEEECCCCEEEEEEEE
T ss_conf -97--346771-3643578999985588750104301250454454111015733797047402177320
No 181
>COG2028 Uncharacterized conserved protein [Function unknown]
Probab=43.82 E-value=11 Score=16.73 Aligned_cols=34 Identities=12% Similarity=0.305 Sum_probs=25.3
Q ss_pred HHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHH
Q ss_conf 8999999754953999704577999999987874
Q gi|254780869|r 374 NDLKRMYQWIRPQVLVAIHGEPLHLVAHKELALQ 407 (559)
Q Consensus 374 edl~~li~~ikPk~~IPvHGe~rhl~~h~~la~~ 407 (559)
++.+..-+-+|||-||||.|-|-.-.++-++.+.
T Consensus 111 ~nvrkY~k~vKPKrfv~V~GrYvkedeyeei~k~ 144 (145)
T COG2028 111 RNVRKYPKVVKPKRFVPVSGRYVKEDEYEEILKK 144 (145)
T ss_pred ECHHHCCCCCCCCEEEEECCEECCHHHHHHHHHC
T ss_conf 0023278768974478755724146579999850
No 182
>PRK06225 aspartate aminotransferase; Provisional
Probab=43.82 E-value=20 Score=14.94 Aligned_cols=19 Identities=21% Similarity=0.298 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHCCEEE
Q ss_conf 8999999999987188699
Q gi|254780869|r 237 VSRIRSIIDIAEQIGRKIV 255 (559)
Q Consensus 237 i~Ri~~i~~~a~~~~R~v~ 255 (559)
-+.++.++++|++++--|+
T Consensus 171 ~~~l~~l~~~a~~~~i~ii 189 (375)
T PRK06225 171 REEIKEFAEIARDNDAYLV 189 (375)
T ss_pred HHHHHHHHHHHHHCCCCCC
T ss_conf 9999999999986277000
No 183
>PRK06836 aspartate aminotransferase; Provisional
Probab=43.78 E-value=20 Score=14.94 Aligned_cols=14 Identities=21% Similarity=0.458 Sum_probs=9.5
Q ss_pred EEECCCCCCCCCCC
Q ss_conf 99776767888767
Q gi|254780869|r 36 MIDCGVSFPKDDLP 49 (559)
Q Consensus 36 iiD~G~~fp~~~~~ 49 (559)
+||.|++.|+-..|
T Consensus 36 VI~l~iG~Pdf~~P 49 (396)
T PRK06836 36 VFDFSLGNPDVEPP 49 (396)
T ss_pred EEECCCCCCCCCCC
T ss_conf 58868959899977
No 184
>TIGR00137 gid gid protein; InterPro: IPR004417 The gid proteins are present in relatively few bacteria but very tightly conserved where they occur. The function of these proteins is unknown. They are closely related to gidA (glucose-inhibited division protein A), which appears to be present in all complete eubacterial genomes so far and in Saccharomyces cerevisiae..
Probab=43.70 E-value=19 Score=15.08 Aligned_cols=277 Identities=18% Similarity=0.252 Sum_probs=157.5
Q ss_pred HCCCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHH-HC----CCCEEEEECHHHHHHHHHHH-HHHHHHCCEEEEEC
Q ss_conf 60878829999635645788877778799999999986-27----98399994147789999999-99987188699844
Q gi|254780869|r 185 AIGNEGILALMCDSTNAMREGTCISEKGIKKNIYDIMK-NA----KGCVLVTTFSSSVSRIRSII-DIAEQIGRKIVLLG 258 (559)
Q Consensus 185 ~~~~~gv~~Li~esT~~~~~~~~~sE~~v~~~i~~~~~-~~----~grViv~~fasni~Ri~~i~-~~a~~~~R~v~i~G 258 (559)
+++++|+-+.|.|. ||.+-.+=+. .+.+.+++. |+ .+---+..--..+-.+.+++ .+|+++ + |--=|
T Consensus 18 qlA~~G~~ViLyEM----RP~k~tPAH~-t~~lAELVCSNslg~~~l~~aaGlLk~Emr~L~SliI~aAd~~-~-VPAGG 90 (444)
T TIGR00137 18 QLAKEGVRVILYEM----RPKKLTPAHH-TEDLAELVCSNSLGAKELARAAGLLKEEMRKLDSLIIEAADEA-A-VPAGG 90 (444)
T ss_pred HHHHCCCCEEEEEC----CCCCCCCCCC-CCCCEEEEECCHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHC-C-CCCCC
T ss_conf 99848972799753----8765778766-6660223202101101012012368999886307999876533-6-89885
Q ss_pred H-HHHHHHHHHHHCCCCC-CCCCCCCHHHHCCCCCCCEEEEEECCCC--CHHHHHHHHCCCCCCC-------CCCC---C
Q ss_conf 8-6999999887428767-7654226566223880208999966963--2688988520277765-------3026---8
Q gi|254780869|r 259 S-SLKRVVSVAIDVGIIK-KDQLFLSDESFGLYPREQLIVIATGSQG--EPRSALAQLSRGEMRN-------VKLA---E 324 (559)
Q Consensus 259 r-s~~~~~~~a~~~g~l~-~~~~~i~~~~~~~~p~~~~~ii~TGsqg--e~~a~l~ria~~~~~~-------i~l~---~ 324 (559)
- ...|-+-...-+..+. -|...+.-++...+|++.++||+||--- -.-+.|..+.-.++-+ |--. .
T Consensus 91 ALaVDR~iFs~s~Te~v~sHPnv~lireEV~EIPe~~~tviaTGPLTS~aLse~lkeltG~dyLyFyDAaaPIVe~dS~d 170 (444)
T TIGR00137 91 ALAVDRKIFSESVTEKVKSHPNVTLIREEVTEIPEEEVTVIATGPLTSEALSEKLKELTGEDYLYFYDAAAPIVEKDSVD 170 (444)
T ss_pred CCHHHHHHHHHHHHHHHHCCCCEEEECCCEEEECCCCEEEEECCCCCCHHHHHHHHHHHCCHHHHHHHHCCCEEHHCCCC
T ss_conf 20112789999887764128845887164005159970798638888278899998750630244553005400000045
Q ss_pred CCEEEEEEECCCC---------HHHHHHHHHHHHHCCC-EEEEECCCCCCEECCCCCCHHHH------HHHHHHCCCC-E
Q ss_conf 9669999615886---------1778999997651031-13430356664131578897899------9999754953-9
Q gi|254780869|r 325 KDTVIFSSRAIPG---------NEVAIGHIKNRLVEQG-VRVIAEDAECPVHVSGHPYPNDL------KRMYQWIRPQ-V 387 (559)
Q Consensus 325 ~D~vI~ss~~ipG---------nE~~~~~~~n~l~~~g-~~vi~~~~~~~iH~SGHa~~edl------~~li~~ikPk-~ 387 (559)
-|.+.|.|+-=-| ||..+.+....|.+.. ++.--.|.+..+|.-|==--|+| ..++-=+||= .
T Consensus 171 ~~k~f~~SRYdKGeaaYlNCp~teEey~~F~eaL~~AE~vplKdFdrEka~fFEGClPIEemA~RG~kTmlfGPmKPVGL 250 (444)
T TIGR00137 171 KEKAFLASRYDKGEAAYLNCPLTEEEYKKFYEALLEAEKVPLKDFDREKAVFFEGCLPIEEMAKRGKKTMLFGPMKPVGL 250 (444)
T ss_pred CCCCEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCEEECCCCCHHHHHHCCHHHCCCCCCCCCCC
T ss_conf 22110102357765553267777456778999998734788987744221332288778999624322302588886466
Q ss_pred EEEECCCHHHHHHHHH--HHH-----H--CCC-----C-CEEE--ECCCEEEEECCC--CEEEEE-EEECCCEEECCCCE
Q ss_conf 9970457799999998--787-----4--478-----6-3155--003227897389--704501-23213202123310
Q gi|254780869|r 388 LVAIHGEPLHLVAHKE--LAL-----Q--EGI-----A-CVPP--VRNGKMLRLFPD--PIEIID-EVVHGLFLKDGFLI 447 (559)
Q Consensus 388 ~IPvHGe~rhl~~h~~--la~-----~--~gv-----~-~i~l--~~NGd~i~l~~~--~~~i~~-~v~~g~~~vDG~~i 447 (559)
+=|+-|.+|.=..--+ .|+ + .|- - +|.| =+-+.|++|-|+ ++..+- -+=+-+++|....+
T Consensus 251 ~dprtGdfrdPankeK~PyAVVQLRqedkaGtL~n~VGFQT~L~wgeQkrVfrLIPgLeNaefVR~GvMHRNTFInSp~l 330 (444)
T TIGR00137 251 VDPRTGDFRDPANKEKKPYAVVQLRQEDKAGTLYNLVGFQTKLKWGEQKRVFRLIPGLENAEFVRLGVMHRNTFINSPKL 330 (444)
T ss_pred CCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCEEEEEEEEECCEECCCCEEEECCCCCCCEEEEEECCCCCCCCCCCHHH
T ss_conf 56755777773234788506873022175676231002221010135551444057843147885074311111276356
Q ss_pred ECCCCHHHHHHHHHHHCCEEEE
Q ss_conf 0255058899997403874999
Q gi|254780869|r 448 GKFADLGIAKRRQLSFVGHLSV 469 (559)
Q Consensus 448 ~~~~~~vl~eR~~Ls~~GiV~V 469 (559)
... .--|++|..|=..|-++=
T Consensus 331 L~~-~l~fk~r~~lFfAGQ~tG 351 (444)
T TIGR00137 331 LTA-SLQFKDREDLFFAGQLTG 351 (444)
T ss_pred HHH-HHCCCCCCCEEECCEECC
T ss_conf 557-530477133133140003
No 185
>TIGR00454 TIGR00454 conserved hypothetical protein TIGR00454; InterPro: IPR005245 This entry describes a family of conserved hypothetical proteins with no known function. .
Probab=43.65 E-value=20 Score=14.93 Aligned_cols=94 Identities=22% Similarity=0.292 Sum_probs=54.0
Q ss_pred EEECCCCCHHHHHHHHCC-CCCCCC-------------CCCCCC---E-EEEEEECCCCHHHHHHHHHHHHHCCCEEEEE
Q ss_conf 996696326889885202-777653-------------026896---6-9999615886177899999765103113430
Q gi|254780869|r 297 IATGSQGEPRSALAQLSR-GEMRNV-------------KLAEKD---T-VIFSSRAIPGNEVAIGHIKNRLVEQGVRVIA 358 (559)
Q Consensus 297 i~TGsqge~~a~l~ria~-~~~~~i-------------~l~~~D---~-vI~ss~~ipGnE~~~~~~~n~l~~~g~~vi~ 358 (559)
+..|..| .||+. .|-+.+ .+++.+ . ++..||--|-.|.- +..++.++..
T Consensus 5 ~MaGGkG------TRlg~d~EKPL~evcGr~lIDhvl~~l~~~~GV~~ii~~TSPhTP~Te~y-------~~~~~~~~~~ 71 (204)
T TIGR00454 5 VMAGGKG------TRLGRDVEKPLLEVCGRKLIDHVLEALKKAKGVDNIIVVTSPHTPKTEEY-------VAEKYKEYKR 71 (204)
T ss_pred EECCCCC------CCCCCCCCCCHHHHCCCCHHHHHHHHHHHCCCCCEEEEEECCCCCCCHHH-------HHHCCCEEEE
T ss_conf 4058873------12265556533756585045777786640478753799837779763788-------7305850457
Q ss_pred CCCCCCEECCCCCCHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHCCCCCEEEECCCEEEEECCCCE
Q ss_conf 35666413157889789999997549539997045779999999878744786315500322789738970
Q gi|254780869|r 359 EDAECPVHVSGHPYPNDLKRMYQWIRPQVLVAIHGEPLHLVAHKELALQEGIACVPPVRNGKMLRLFPDPI 429 (559)
Q Consensus 359 ~~~~~~iH~SGHa~~edl~~li~~ikPk~~IPvHGe~rhl~~h~~la~~~gv~~i~l~~NGd~i~l~~~~~ 429 (559)
---+-+||-+|-|||.+.++ |-+.+ +..++++-|-|++.+.+.-.
T Consensus 72 ---ivvidasGkGYiEDl~E~~~-------------------hlE~~----~~EP~lV~ssDl~~~r~~~i 116 (204)
T TIGR00454 72 ---IVVIDASGKGYIEDLREVLS-------------------HLELA----FSEPLLVVSSDLVLVRDKII 116 (204)
T ss_pred ---EEEEECCCCCCHHHHHHHHH-------------------HHHHH----HCCCEEEEECCHHHHHHHHH
T ss_conf ---88997699960252789999-------------------87766----33985787436024336778
No 186
>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase. All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.
Probab=43.47 E-value=20 Score=14.91 Aligned_cols=20 Identities=35% Similarity=0.311 Sum_probs=11.6
Q ss_pred HHHHHHHHHCCCEEEEECCC
Q ss_conf 99999765103113430356
Q gi|254780869|r 342 IGHIKNRLVEQGVRVIAEDA 361 (559)
Q Consensus 342 ~~~~~n~l~~~g~~vi~~~~ 361 (559)
...+.+.|.+.|++|..+|+
T Consensus 335 s~~ii~~L~~~g~~V~~~DP 354 (411)
T TIGR03026 335 ALDIIELLKEKGAKVKAYDP 354 (411)
T ss_pred HHHHHHHHHHCCCEEEEECC
T ss_conf 99999999978898999999
No 187
>PRK12693 flgG flagellar basal body rod protein FlgG; Provisional
Probab=43.43 E-value=20 Score=14.90 Aligned_cols=40 Identities=28% Similarity=0.434 Sum_probs=18.4
Q ss_pred CCEEEEEEECCCCCCCCCEEEEEECCCEEEEC--CCCEECCC
Q ss_conf 34899998556777765356798768179983--34024677
Q gi|254780869|r 132 GAFSIESVRVNHSIPETMALVIRSPVGNIVHT--GDWKLDDD 171 (559)
Q Consensus 132 g~~~v~~~~~~Hsip~a~~~~I~t~~g~i~yt--GDfk~d~~ 171 (559)
|.++-|--+.+=-|-|--.|.+.+|+|.+.|| |+|++|..
T Consensus 84 G~l~~Tg~~lDlAI~G~GfF~V~~~~G~~~yTR~G~F~~d~~ 125 (261)
T PRK12693 84 GNLQQTGNSLDVAIEGQGFFQVQLPDGTIAYTRDGSFKLDQD 125 (261)
T ss_pred CCEEECCCCEEEEECCCCEEEEECCCCCEEEEECCCEEECCC
T ss_conf 750306982039984880799975898464774443689899
No 188
>TIGR01072 murA UDP-N-acetylglucosamine 1-carboxyvinyltransferase; InterPro: IPR005750 The bacterial enzyme UDP-N-acetylglucosamine (UDP-GlcNAc) enolpyruvyltransferase (MurA) catalyzes the transfer of enolpyruvate from phosphoenolpyruvate to uridine diphospho-N-acetylglucosamine, which is the first committed step of bacterial cell wall biosynthesis. Experimental evidence suggests that binding of substrates to the enzyme does not exclusively follow an ordered mechanism with UDP-GlcNAc binding first, although binding of UDP-GlcNAc to free enzyme is preferred and possibly influenced by pyruvate-P. The reaction thus appears to follow an induced-fit mechanism, in which the binding site for fosfomycin, and presumably also for pyruvate-P, is created by the interaction of free enzyme with the sugar nucleotide. ; GO: 0016740 transferase activity, 0019277 UDP-N-acetylgalactosamine biosynthetic process.
Probab=43.37 E-value=18 Score=15.19 Aligned_cols=20 Identities=20% Similarity=0.273 Sum_probs=11.2
Q ss_pred CCCCEEEEEECCCEEEECCC
Q ss_conf 76535679876817998334
Q gi|254780869|r 146 PETMALVIRSPVGNIVHTGD 165 (559)
Q Consensus 146 p~a~~~~I~t~~g~i~ytGD 165 (559)
..+.|.-|+.++|.|.-..+
T Consensus 133 L~~lGA~i~~~~G~v~A~~~ 152 (443)
T TIGR01072 133 LEALGAEITIEDGYVVASAE 152 (443)
T ss_pred HHHCCCEEEECCCEEEEEEC
T ss_conf 98559899981639999850
No 189
>TIGR02517 type_II_gspD general secretion pathway protein D; InterPro: IPR013356 In Gram-negative bacteria, proteins that have first crossed the inner member by Sec-dependent protein transport can be exported across the outer membrane by type II secretion (also referred to as the main terminal branch of the general secretion pathway). Members of this family are general secretion pathway protein D. In Yersinia enterocolitica, a second member of this family is part of a novel second type II secretion system specifically associated with virulence (See ). This family is closely homologous to the type IV pilus outer membrane secretin PilQ (IPR013355 from INTERPRO) and to the type III secretion system pore YscC/HrcC (IPR003522 from INTERPRO).; GO: 0008565 protein transporter activity, 0015628 protein secretion by the type II secretion system, 0015627 type II protein secretion system complex, 0019867 outer membrane.
Probab=42.81 E-value=20 Score=14.84 Aligned_cols=41 Identities=20% Similarity=0.392 Sum_probs=23.9
Q ss_pred CHHHHHHHHHHHHHHCCC---------CEEEEECHHHHHHHHHHHHHHHH
Q ss_conf 787999999999862798---------39999414778999999999987
Q gi|254780869|r 209 SEKGIKKNIYDIMKNAKG---------CVLVTTFSSSVSRIRSIIDIAEQ 249 (559)
Q Consensus 209 sE~~v~~~i~~~~~~~~g---------rViv~~fasni~Ri~~i~~~a~~ 249 (559)
+=.++.+-|+.++.-.+| .|+|+-||+||.|+.+|+..-..
T Consensus 110 ~A~~~~~~L~Pl~sp~~g~v~~y~~~N~i~v~D~A~ni~r~~~ii~~~D~ 159 (697)
T TIGR02517 110 SAEELVPVLRPLVSPRNGDVAAYPASNTIVVTDYASNIERVARIISQLDV 159 (697)
T ss_pred CHHHHHHHHHHHCCCCCCEEEECCCCCEEEEEEEHHHHHHHHHHHHHHCC
T ss_conf 97999999875078877668871888879998555678999999886326
No 190
>KOG0370 consensus
Probab=42.41 E-value=21 Score=14.80 Aligned_cols=78 Identities=24% Similarity=0.412 Sum_probs=43.9
Q ss_pred ECCCCCCEEEEEECCCCCCCC---CCCCEEE-ECCCHHHHHHHHHCCCEEEEECCCCCCCCCHHHHHHH----C--CCCE
Q ss_conf 517778648999776767888---7675028-7079579876641246899605430121607888986----2--9977
Q gi|254780869|r 26 YGSPSSRKWIMIDCGVSFPKD---DLPGVDL-VFPDITFIMKERKNLMAIFITHAHEDHYGALHDLWSF----L--HVPV 95 (559)
Q Consensus 26 ~~~~~~~~~iiiD~G~~fp~~---~~~gid~-iiPd~~~l~~~~~~i~~i~iTH~H~DHiGalp~l~~~----~--~~pI 95 (559)
|+....-.++.+|||++.+.- ..-|..+ ++| ++|.-+.. ..+|+|+|.+--|--- .|++... + +.||
T Consensus 167 y~~Gk~~~I~aiDcG~K~N~IRcL~~RGa~vtVvP-w~~~i~~~-~yDGlflSNGPGdPe~-~~~~v~~vr~lL~~~~Pv 243 (1435)
T KOG0370 167 YGDGKSLRILAIDCGLKYNQIRCLVKRGAEVTVVP-WDYPIAKE-EYDGLFLSNGPGDPEL-CPLLVQNVRELLESNVPV 243 (1435)
T ss_pred ECCCCCCEEEECCCCCHHHHHHHHHHHCCEEEEEC-CCCCCCCC-CCCEEEEECCCCCCHH-HHHHHHHHHHHHHCCCCE
T ss_conf 70786417997356741899999998495699903-77622012-5561797279999056-589999999998279985
Q ss_pred ECCHHHHHHHH
Q ss_conf 92999999999
Q gi|254780869|r 96 YASPFAIGLLE 106 (559)
Q Consensus 96 Y~s~~t~~li~ 106 (559)
|+--++..++.
T Consensus 244 fGIClGHQllA 254 (1435)
T KOG0370 244 FGICLGHQLLA 254 (1435)
T ss_pred EEEEHHHHHHH
T ss_conf 89736669999
No 191
>COG1619 LdcA Uncharacterized proteins, homologs of microcin C7 resistance protein MccF [Defense mechanisms]
Probab=42.36 E-value=21 Score=14.79 Aligned_cols=14 Identities=21% Similarity=0.188 Sum_probs=7.8
Q ss_pred HHHHHHHHHHHCCC
Q ss_conf 78999997651031
Q gi|254780869|r 340 VAIGHIKNRLVEQG 353 (559)
Q Consensus 340 ~~~~~~~n~l~~~g 353 (559)
..+.|++..|...|
T Consensus 220 ~~idR~L~qL~~~g 233 (313)
T COG1619 220 YRIDRMLLQLKLAG 233 (313)
T ss_pred HHHHHHHHHHHHHC
T ss_conf 78999999998708
No 192
>cd00946 FBP_aldolase_IIA Class II Type A, Fructose-1,6-bisphosphate (FBP) aldolases. The enzyme catalyses the zinc-dependent, reversible aldol condensation of dihydroxyacetone phosphate with glyceraldehyde-3-phosphate to form fructose-1,6-bisphosphate. FBP aldolase is homodimeric and used in gluconeogenesis and glycolysis. The type A and type B Class II FBPA's differ in the presence and absence of distinct indels in the sequence that result in differing loop lengths in the structures.
Probab=41.90 E-value=21 Score=14.74 Aligned_cols=43 Identities=14% Similarity=0.326 Sum_probs=34.6
Q ss_pred HHHHHHHHHC-CCCEEEEEC-HHHHHHHHHHHHHHHHHCCEEEEE
Q ss_conf 9999998627-983999941-477899999999998718869984
Q gi|254780869|r 215 KNIYDIMKNA-KGCVLVTTF-SSSVSRIRSIIDIAEQIGRKIVLL 257 (559)
Q Consensus 215 ~~i~~~~~~~-~grViv~~f-asni~Ri~~i~~~a~~~~R~v~i~ 257 (559)
+.+.++++.+ ++.--|++| -.|++-++.++++|++.+-+|.+-
T Consensus 2 ~~l~emL~~A~~~~YAV~AfNv~NlE~~~Ail~AAee~~sPVIiq 46 (345)
T cd00946 2 DDVLKLFDYAKENGFAIPAVNCTSSSTINAVLEAARDAKSPIIIQ 46 (345)
T ss_pred HHHHHHHHHHHHCCCEEEEEEECCHHHHHHHHHHHHHHCCCEEEE
T ss_conf 479999999998597788874699999999999999978899998
No 193
>TIGR02877 spore_yhbH sporulation protein YhbH; InterPro: IPR014230 Proteins in this entry, typified by YhbH from Bacillus subtilis, are found in the genomes of nearly every endospore-forming bacterium, and in no other genomes. The gene in Bacillus subtilis was shown to be a member of the sigma-E regulon, with mutation leading to a sporulation defect ..
Probab=41.89 E-value=21 Score=14.74 Aligned_cols=102 Identities=21% Similarity=0.281 Sum_probs=53.5
Q ss_pred CCCCCC--CHHHHHHHHHHHHHHC---------CCCEEEEEC-----------HHHHHHHHHHHHHHHHHCC---EEEEE
Q ss_conf 888777--7879999999998627---------983999941-----------4778999999999987188---69984
Q gi|254780869|r 203 REGTCI--SEKGIKKNIYDIMKNA---------KGCVLVTTF-----------SSSVSRIRSIIDIAEQIGR---KIVLL 257 (559)
Q Consensus 203 ~~~~~~--sE~~v~~~i~~~~~~~---------~grViv~~f-----------asni~Ri~~i~~~a~~~~R---~v~i~ 257 (559)
.+|.-. +|=.+.+-.+-+|++- ...|+...+ .+||+|=.|++++-++.-+ .|-=+
T Consensus 106 ~~GeDyyEaEVtleel~e~lf~dL~LPnL~~K~~~~I~~~~~~~~~G~rK~Gl~~nldkkRT~~E~~KRn~~~~~~ikeL 185 (392)
T TIGR02877 106 QEGEDYYEAEVTLEELEELLFEDLELPNLKKKKKDEITTESVKFKDGVRKKGLMGNLDKKRTVIEALKRNQLRGKPIKEL 185 (392)
T ss_pred CCCCCEEECCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHCCCEEECCCCCCHHHHHHHHHHHHHHHHHCCCHHHH
T ss_conf 88853464156689999999985178887666656765554121387041488853225654888987987508801452
Q ss_pred CHHHHHHHHHHHHCCCCCCCCC-CCCHHHHCCCCCCCEEEE----EECCCCCHHHHHHHH
Q ss_conf 4869999998874287677654-226566223880208999----966963268898852
Q gi|254780869|r 258 GSSLKRVVSVAIDVGIIKKDQL-FLSDESFGLYPREQLIVI----ATGSQGEPRSALAQL 312 (559)
Q Consensus 258 Grs~~~~~~~a~~~g~l~~~~~-~i~~~~~~~~p~~~~~ii----~TGsqge~~a~l~ri 312 (559)
||.....+ + +..+.+ |-..++ ...|.-++||| |+||+|+---+++|-
T Consensus 186 G~D~~~l~------~-i~~dDLRy~~w~~-~~~pe~~AVvi~mMDtSGSMg~~kKYiARS 237 (392)
T TIGR02877 186 GKDKVELY------P-ITKDDLRYKTWDE-KEKPESKAVVIAMMDTSGSMGEFKKYIARS 237 (392)
T ss_pred CCCEEECC------C-CCCCCCCCCEECC-CCCCCCCEEEEEEECCCCCCCCCHHHHHHH
T ss_conf 66511007------7-8611023210013-578986737777644788988731678888
No 194
>KOG2004 consensus
Probab=41.77 E-value=21 Score=14.73 Aligned_cols=36 Identities=25% Similarity=0.229 Sum_probs=17.9
Q ss_pred CCCEEEEECCCCCCCCCHHHHHHHCCCCEEC-CHHHHHHHHHHHHH
Q ss_conf 2468996054301216078889862997792-99999999999985
Q gi|254780869|r 67 NLMAIFITHAHEDHYGALHDLWSFLHVPVYA-SPFAIGLLEAKRVY 111 (559)
Q Consensus 67 ~i~~i~iTH~H~DHiGalp~l~~~~~~pIY~-s~~t~~li~~~~~~ 111 (559)
.+-++.++|.- |++-+-.+|+. ++...++++.++..
T Consensus 68 ~l~~Lpi~~~p---------LfPGf~~~i~v~~~~~~~~i~~~l~~ 104 (906)
T KOG2004 68 RLPALPITRGP---------LFPGFYKRIEVKSPKVLALIREKLRR 104 (906)
T ss_pred CCCEEECCCCC---------CCCCCEEEEEECCHHHHHHHHHHHHH
T ss_conf 45243336777---------67772368882688899999999973
No 195
>cd01541 PBP1_AraR Ligand-binding domain of DNA transcription repressor specific for arabinose (AraR) which is a member of the LacI-GalR family of bacterial transcription regulators. Ligand-binding domain of DNA transcription repressor specific for arabinose (AraR) which is a member of the LacI-GalR family of bacterial transcription regulators. The ligand-binding domain of AraR is structurally homologous to the periplasmic sugar-binding domain of ABC-type transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which i
Probab=41.58 E-value=21 Score=14.71 Aligned_cols=68 Identities=16% Similarity=0.254 Sum_probs=36.3
Q ss_pred CCCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHH-HCCCCEEEEECHHHHHHHHHHHHHHHHHCCEEEEECHHH
Q ss_conf 0878829999635645788877778799999999986-279839999414778999999999987188699844869
Q gi|254780869|r 186 IGNEGILALMCDSTNAMREGTCISEKGIKKNIYDIMK-NAKGCVLVTTFSSSVSRIRSIIDIAEQIGRKIVLLGSSL 261 (559)
Q Consensus 186 ~~~~gv~~Li~esT~~~~~~~~~sE~~v~~~i~~~~~-~~~grViv~~fasni~Ri~~i~~~a~~~~R~v~i~Grs~ 261 (559)
..+.|..+|++.+.+ ++..-.+.++.+.. +..|.|++++.++.-..-...++-.++.+.++++.+|.+
T Consensus 25 ~~~~gy~~li~~s~~--------~~~~e~~~l~~l~~~~vdGiIl~~~~~~~~~~~~~~~~~l~~~~iPvV~i~~~~ 93 (273)
T cd01541 25 LSEKGYSLLLASTNN--------DPERERKCLENMLSQGIDGLIIEPTKSALPNPNIDLYLKLEKLGIPYVFINASY 93 (273)
T ss_pred HHHCCCEEEEEECCC--------CHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCHHHHHHHHHCCCCEEEEECCC
T ss_conf 998699899997899--------989999999999965999899925310357877799999997699899995677
No 196
>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase; InterPro: IPR005990 Synonyms: Inosine-5'-monophosphate dehydrogenase, Inosinic acid dehydrogenase IMP dehydrogenase (1.1.1.205 from EC,IMPDH) catalyzes the rate-limiting reaction of de novo GTP biosynthesis, the NAD-dependent reduction of IMP into XMP . Inosine 5-phosphate + NAD+ + H2O = xanthosine 5-phosphate + NADH IMP dehydrogenase is associated with cell proliferation and is a possible target for cancer chemotherapy. Mammalian and bacterial IMPDHs are tetramers of identical chains. There are two IMP dehydrogenase isozymes in humans . IMP dehydrogenase nearly always contains a long insertion that has two CBS domains within it and adopts a TIM barrel structure.; GO: 0003938 IMP dehydrogenase activity, 0006177 GMP biosynthetic process.
Probab=40.72 E-value=22 Score=14.62 Aligned_cols=224 Identities=17% Similarity=0.205 Sum_probs=113.1
Q ss_pred CCCCCCCCCEEEEEEE-----CCCCCCEEEEE--ECCCCCCCCCCCCEEEECCCHHHHHHHHHCCCEEEEECCCCCCC--
Q ss_conf 0686834660699995-----17778648999--77676788876750287079579876641246899605430121--
Q gi|254780869|r 11 LGGVGEIGMNMALYGY-----GSPSSRKWIMI--DCGVSFPKDDLPGVDLVFPDITFIMKERKNLMAIFITHAHEDHY-- 81 (559)
Q Consensus 11 lGG~~eiG~N~~~~~~-----~~~~~~~~iii--D~G~~fp~~~~~gid~iiPd~~~l~~~~~~i~~i~iTH~H~DHi-- 81 (559)
+||.|=|=+||..=+- -....+..|+. |..+.+|+...- |...|.++ ..+.|+++|.-=.+|-
T Consensus 57 ~GGiGVIH~N~~~E~Qae~V~~VKr~e~g~i~redp~t~~P~~tv~-------~~~~l~~~-~gisG~PVv~~G~~~g~k 128 (476)
T TIGR01302 57 EGGIGVIHRNMSIERQAEEVKRVKRAENGIISREDPVTISPETTVE-------DVLELMER-KGISGIPVVEDGKDGGPK 128 (476)
T ss_pred CCCCEEEECCCCHHHHHHHHHHHHHHCCCEEEECCCEEECCCCHHH-------HHHHHCCC-CCCCEEEEEECCCCCCCC
T ss_conf 4994799447998999999887523206606514886847985189-------99973221-576545788368898971
Q ss_pred --CCHHH----HHHHC------CCC--EE--CCH----------HHHHHHHHHHHHCCCCCCCCEEEECCCCEEEECCEE
Q ss_conf --60788----89862------997--79--299----------999999999985488655622551755557763489
Q gi|254780869|r 82 --GALHD----LWSFL------HVP--VY--ASP----------FAIGLLEAKRVYERVSKKIPCISFQAGDKVDVGAFS 135 (559)
Q Consensus 82 --Galp~----l~~~~------~~p--IY--~s~----------~t~~li~~~~~~~~~~~~~~~~~i~~~~~~~~g~~~ 135 (559)
--+.. -|+++ +-| |+ +|+ .+.+=+...|.++++.. +-.++....+ +|=++
T Consensus 129 tGKLvGIiT~sqWrD~~f~~~~~~~daV~~~MT~~~~~iT~~e~i~~e~A~~~L~~~r~ek---LpvVd~~~~l-VgLiT 204 (476)
T TIGR01302 129 TGKLVGIITKSQWRDVRFVKDKGKKDAVSEVMTPREELITVPEGIDLEEALKVLHKHRIEK---LPVVDKDGEL-VGLIT 204 (476)
T ss_pred EEEEEEEEECCCEEECCCCCCCCCCCCEEECCCCCCCCEEECCCCCHHHHHHHHHHHCCCE---EEEECCCCCE-EEEEE
T ss_conf 0069999837722541101046883301011203764348416777899999988608650---4788278988-99986
Q ss_pred EEEE----ECCCCCCCCCEEEEEECCCEEEECCCCEECCCCCCCCCCCHHHHHHCCCCCCEEEEECCCCCCCCCCCC---
Q ss_conf 9998----556777765356798768179983340246776654238988998608788299996356457888777---
Q gi|254780869|r 136 IESV----RVNHSIPETMALVIRSPVGNIVHTGDWKLDDDAILGDVTDKDSLCAIGNEGILALMCDSTNAMREGTCI--- 208 (559)
Q Consensus 136 v~~~----~~~Hsip~a~~~~I~t~~g~i~ytGDfk~d~~p~~g~~~d~~~l~~~~~~gv~~Li~esT~~~~~~~~~--- 208 (559)
++=+ .-.||.+|+.| +.|++.=-. .+--...|++|+.++.+-|||+++.||-.+.+..-=.
T Consensus 205 ~~Di~~~~~~P~A~kd~vG-----~~GrL~VgA-------Avg~r~~D~~R~~~L~~AGvDv~viDsshGhs~~vl~~ik 272 (476)
T TIGR01302 205 VKDIVKRREFPHASKDTVG-----ENGRLIVGA-------AVGTREDDLERAEALVEAGVDVIVIDSSHGHSIYVLDSIK 272 (476)
T ss_pred HHHHHHHHHCCCCCCCCCC-----CCCEEEEEE-------EECCCCCCHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHH
T ss_conf 4478898638887788748-----886089998-------8468986189999999659658998166545378999999
Q ss_pred ------CH----------HHHHHHHHHHHHHC------CC-----CEEEEECHHHHHHHHHHHHHHHHHCCEEEEEC
Q ss_conf ------78----------79999999998627------98-----39999414778999999999987188699844
Q gi|254780869|r 209 ------SE----------KGIKKNIYDIMKNA------KG-----CVLVTTFSSSVSRIRSIIDIAEQIGRKIVLLG 258 (559)
Q Consensus 209 ------sE----------~~v~~~i~~~~~~~------~g-----rViv~~fasni~Ri~~i~~~a~~~~R~v~i~G 258 (559)
++ ++-.++|.+.+.+. .| |++.+|==.++-=+.++.++|.++|-+|.-+|
T Consensus 273 ~~k~~Yp~~~iiaGNVaT~~~a~~LI~AgADg~rVGiGpGSICTTr~V~gVGvPQ~TAv~~Va~~A~~~Gi~VIADG 349 (476)
T TIGR01302 273 KIKKTYPDLDIIAGNVATAEQAKALIDAGADGLRVGIGPGSICTTRIVAGVGVPQITAVYDVAEYAAQSGIPVIADG 349 (476)
T ss_pred HHHHHCCEEEEEECCCCCHHHHHHHHHCCCCEEEECCCCCCCCEEEEEEECCCHHHHHHHHHHHHHHHCCCEEEECC
T ss_conf 99863880579943441178898898528887898368898110015651276268899999999972799099837
No 197
>cd02517 CMP-KDO-Synthetase CMP-KDO synthetase catalyzes the activation of KDO which is an essential component of the lipopolysaccharide. CMP-KDO Synthetase: 3-Deoxy-D-manno-octulosonate cytidylyltransferase (CMP-KDO synthetase) catalyzes the conversion of CTP and 3-deoxy-D-manno-octulosonate into CMP-3-deoxy-D-manno-octulosonate (CMP-KDO) and pyrophosphate. KDO is an essential component of the lipopolysaccharide found in the outer surface of gram-negative eubacteria. It is also a constituent of the capsular polysaccharides of some gram-negative eubacteria. Its presence in the cell wall polysaccharides of green algae and plant were also discovered. However, they have not been found in yeast and animals. The absence of the enzyme in mammalian cells makes it an attractive target molecule for drug design.
Probab=40.69 E-value=22 Score=14.62 Aligned_cols=121 Identities=22% Similarity=0.232 Sum_probs=60.7
Q ss_pred HHHHHHHHHHHH-CCCCEEEEECHHHHHHHHHHHHHHHHHCCEEEEECHH----HHHHHHHHHHCCC-------CCCCCC
Q ss_conf 999999999862-7983999941477899999999998718869984486----9999998874287-------677654
Q gi|254780869|r 212 GIKKNIYDIMKN-AKGCVLVTTFSSSVSRIRSIIDIAEQIGRKIVLLGSS----LKRVVSVAIDVGI-------IKKDQL 279 (559)
Q Consensus 212 ~v~~~i~~~~~~-~~grViv~~fasni~Ri~~i~~~a~~~~R~v~i~Grs----~~~~~~~a~~~g~-------l~~~~~ 279 (559)
-+...+++..+. .-..|+|+|=+ ++|.+.|++.|-++++.+.. ..|..+++.+++. +..+..
T Consensus 28 mI~~v~~~a~~s~~~d~V~VATDd------~eI~~~~~~~g~~~imT~~~h~~GTdRi~ea~~~l~~~~D~iinvQGDeP 101 (239)
T cd02517 28 MIQHVYERAKKAKGLDEVVVATDD------ERIADAVESFGGKVVMTSPDHPSGTDRIAEVAEKLDADDDIVVNVQGDEP 101 (239)
T ss_pred HHHHHHHHHHHCCCCCEEEEECCC------HHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCEEEEEECCCC
T ss_conf 899999999966998849996482------65553321479740104643356215999999971998898999518756
Q ss_pred CCCHHHHCCC----CCCCEEEEEECCCCCHHHHHHHHCCCCCCCCCCC-CCCEEEEEEECCCCHHH
Q ss_conf 2265662238----8020899996696326889885202777653026-89669999615886177
Q gi|254780869|r 280 FLSDESFGLY----PREQLIVIATGSQGEPRSALAQLSRGEMRNVKLA-EKDTVIFSSRAIPGNEV 340 (559)
Q Consensus 280 ~i~~~~~~~~----p~~~~~ii~TGsqge~~a~l~ria~~~~~~i~l~-~~D~vI~ss~~ipGnE~ 340 (559)
+++++.+..+ ..+.-.-++|... +...-..+.+.+-..+-+. .+....||-.+||.+..
T Consensus 102 li~p~~I~~~i~~~~~~~~~~v~t~~~--~i~~~~~~~~~n~VKvv~~~~~~alyfSRs~IP~~~~ 165 (239)
T cd02517 102 LIPPEMIDQVVAALKDDPGVDMATLAT--PISDEEELFNPNVVKVVLDKDGYALYFSRSPIPYPRD 165 (239)
T ss_pred CCCHHHHHHHHHHHHHCCCCEEEEEEE--ECCCHHHHCCCCCEEEEECCCCCCHHCCCCCCCCCCC
T ss_conf 789999999999985288755987402--3699889418996399978988511033478864345
No 198
>PRK12816 flgG flagellar basal body rod protein FlgG; Reviewed
Probab=40.67 E-value=22 Score=14.61 Aligned_cols=43 Identities=21% Similarity=0.375 Sum_probs=27.0
Q ss_pred EECCEEEEEEECCCCCCCCCEEEEEECCCEEEEC--CCCEECCCC
Q ss_conf 7634899998556777765356798768179983--340246776
Q gi|254780869|r 130 DVGAFSIESVRVNHSIPETMALVIRSPVGNIVHT--GDWKLDDDA 172 (559)
Q Consensus 130 ~~g~~~v~~~~~~Hsip~a~~~~I~t~~g~i~yt--GDfk~d~~p 172 (559)
+-|+++-|--+.+=.|-|--.|.+.+|+|.+.|| |+|++|...
T Consensus 82 ~qG~l~~Tg~~lDlAI~G~GfF~V~~~~G~~~yTR~G~F~~d~~G 126 (264)
T PRK12816 82 EQGSLQATGLKTDVAIEGEGFFKILLPDGTYAYTRDGSFKIDSNR 126 (264)
T ss_pred CCCCCEECCCCEEEEECCCCEEEEECCCCCEEEEECCCEEECCCC
T ss_conf 688854069820389848948999737995638875547899998
No 199
>PRK08361 aspartate aminotransferase; Provisional
Probab=40.50 E-value=22 Score=14.60 Aligned_cols=30 Identities=23% Similarity=0.366 Sum_probs=19.6
Q ss_pred CCEEEEECHHH-------HHHHHHHHHHHHHHCCEEE
Q ss_conf 83999941477-------8999999999987188699
Q gi|254780869|r 226 GCVLVTTFSSS-------VSRIRSIIDIAEQIGRKIV 255 (559)
Q Consensus 226 grViv~~fasn-------i~Ri~~i~~~a~~~~R~v~ 255 (559)
-+.++-|+.+| -++++.++++|++++--|+
T Consensus 166 ~k~ivl~~P~NPTG~v~s~e~l~~l~~la~~~~i~ii 202 (390)
T PRK08361 166 TRMIVINYPNNPTGAVLDKETAKAIADIAEDYNIYIL 202 (390)
T ss_pred CEEEEECCCCCCCCCCCCHHHHHHHHHHHHHCCCEEC
T ss_conf 7599988998975778667888899999986395534
No 200
>cd01494 AAT_I Aspartate aminotransferase (AAT) superfamily (fold type I) of pyridoxal phosphate (PLP)-dependent enzymes. PLP combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the substrate in four kinds of reactions (1) transamination (movement of amino groups), (2) racemization (redistribution of enantiomers), (3) decarboxylation (removing COOH groups), and (4) various side-chain reactions depending on the enzyme involved. Pyridoxal phosphate (PLP) dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalyzed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary history of these enzymes. Structure and sequence analysis
Probab=40.26 E-value=22 Score=14.57 Aligned_cols=81 Identities=16% Similarity=0.084 Sum_probs=41.6
Q ss_pred CCCCCEEEEEEECCCCHHHHHHHHHHHHHCCCEEEEECCCCCCEECCCCCCHHHHHHHHHHCCCCEEEEEC-----CCHH
Q ss_conf 26896699996158861778999997651031134303566641315788978999999754953999704-----5779
Q gi|254780869|r 322 LAEKDTVIFSSRAIPGNEVAIGHIKNRLVEQGVRVIAEDAECPVHVSGHPYPNDLKRMYQWIRPQVLVAIH-----GEPL 396 (559)
Q Consensus 322 l~~~D~vI~ss~~ipGnE~~~~~~~n~l~~~g~~vi~~~~~~~iH~SGHa~~edl~~li~~ikPk~~IPvH-----Ge~r 396 (559)
+++||.||.++..-.++.. ......|+++....... -..+....+++.+....-+|+.++-.| |...
T Consensus 38 ~~~gd~vi~~~~~~~s~~~------~~~~~~g~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~g~~~ 109 (170)
T cd01494 38 LGPGDEVIVDANGHGSRYW------VAAELAGAKPVPVPVDD--AGYGGLDVAILEELKAKPNVALIVITPNTTSGGVLV 109 (170)
T ss_pred HCCCCEEEECCCCHHHHHH------HHHHHCCCEEEEECCCC--CCCCCCCHHHHHHHHCCCCCEEEEEEEECCCCCCCC
T ss_conf 2799999982684375689------99986598778723477--875546899999985599963688774014787320
Q ss_pred HHHHHHHHHHHCCC
Q ss_conf 99999987874478
Q gi|254780869|r 397 HLVAHKELALQEGI 410 (559)
Q Consensus 397 hl~~h~~la~~~gv 410 (559)
-+.+-+++|++.|+
T Consensus 110 ~l~~I~~la~~~gi 123 (170)
T cd01494 110 PLKEIRKIAKEYGI 123 (170)
T ss_pred CHHHHHHHHHHCCC
T ss_conf 19999735620796
No 201
>pfam04033 DUF365 Domain of unknown function (DUF365). Archaeal domain of unknown function.
Probab=40.15 E-value=8.2 Score=17.71 Aligned_cols=22 Identities=14% Similarity=0.477 Sum_probs=17.2
Q ss_pred HHHHHHHHHCCCCEEEEECCCH
Q ss_conf 8999999754953999704577
Q gi|254780869|r 374 NDLKRMYQWIRPQVLVAIHGEP 395 (559)
Q Consensus 374 edl~~li~~ikPk~~IPvHGe~ 395 (559)
++++..=+.+|||-||||-|-|
T Consensus 73 e~irkY~~vvKPkRfv~V~GrY 94 (97)
T pfam04033 73 ENIRKYDKVVKPKRFVPVGGRY 94 (97)
T ss_pred CCCHHCCCCCCCCEEEEECCEE
T ss_conf 0500067657873278766656
No 202
>PRK10773 murF UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase; Reviewed
Probab=39.96 E-value=23 Score=14.54 Aligned_cols=46 Identities=17% Similarity=0.128 Sum_probs=21.9
Q ss_pred CCHHHHHHHHHHHHHH--CCCCEEEEECHHHHHHHHHHHHHHHHHCCEEEEEC
Q ss_conf 7787999999999862--79839999414778999999999987188699844
Q gi|254780869|r 208 ISEKGIKKNIYDIMKN--AKGCVLVTTFSSSVSRIRSIIDIAEQIGRKIVLLG 258 (559)
Q Consensus 208 ~sE~~v~~~i~~~~~~--~~grViv~~fasni~Ri~~i~~~a~~~~R~v~i~G 258 (559)
.|-..+.++=.++|+. .+|.+++..-..+..+.+. ...++++..++
T Consensus 193 gs~e~~~~aK~~Lf~~l~~~g~~IlN~Dd~~~~~~~~-----~~~~~~v~~~~ 240 (452)
T PRK10773 193 GSLAGVAKAKGEIFTGLPENGIAIMNADNNDWLNWQS-----VIGSRKVWRFS 240 (452)
T ss_pred CCHHHHHHHHHHHHHCCCCCCEEEEECCCHHHHHHHH-----HHCCCEEEEEC
T ss_conf 7699999999999817887989999798767999999-----83798289980
No 203
>KOG0053 consensus
Probab=39.93 E-value=23 Score=14.54 Aligned_cols=47 Identities=21% Similarity=0.217 Sum_probs=24.7
Q ss_pred CCHHHHHHHHHHHHHHCCCCEEEEECHHHHHHHHHHHHHHHHHCCEEEEEC
Q ss_conf 778799999999986279839999414778999999999987188699844
Q gi|254780869|r 208 ISEKGIKKNIYDIMKNAKGCVLVTTFSSSVSRIRSIIDIAEQIGRKIVLLG 258 (559)
Q Consensus 208 ~sE~~v~~~i~~~~~~~~grViv~~fasni~Ri~~i~~~a~~~~R~v~i~G 258 (559)
|+...++..+. .++.+.+ +-+|+|-+.-+-.++..-...|.+++..|
T Consensus 77 Pt~~~le~~ia-al~ga~~---~l~fsSGmaA~~~al~~L~~~g~~iV~~~ 123 (409)
T KOG0053 77 PTRDVLESGIA-ALEGAAH---ALLFSSGMAAITVALLHLLPAGDHIVATG 123 (409)
T ss_pred CCHHHHHHHHH-HHHCCCE---EEEECCCHHHHHHHHHHHCCCCCCEEEEC
T ss_conf 96689999999-8718863---89934407899999998467898589717
No 204
>COG4786 FlgG Flagellar basal body rod protein [Cell motility and secretion]
Probab=39.54 E-value=23 Score=14.49 Aligned_cols=43 Identities=21% Similarity=0.369 Sum_probs=32.1
Q ss_pred EEECCEEEEEEECCCCCCCCCEEEEEECCCEEEECCC--CEECCC
Q ss_conf 7763489999855677776535679876817998334--024677
Q gi|254780869|r 129 VDVGAFSIESVRVNHSIPETMALVIRSPVGNIVHTGD--WKLDDD 171 (559)
Q Consensus 129 ~~~g~~~v~~~~~~Hsip~a~~~~I~t~~g~i~ytGD--fk~d~~ 171 (559)
++-|+++-|--+.+=-|-|.-.|.|.+|+|.+.||=| |.+|..
T Consensus 81 ~tqGsl~~T~n~lD~AI~g~gfF~I~~~dG~~~YTR~G~F~~d~~ 125 (265)
T COG4786 81 FTQGSLQKTDNPLDLAITGDGFFQIQTPDGTIAYTRDGSFTVDEE 125 (265)
T ss_pred CCCCCCEECCCCCCEEECCCCEEEEECCCCCEEEEECCCEEECCC
T ss_conf 044674106985435874782699984998788852774468899
No 205
>COG1086 Predicted nucleoside-diphosphate sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]
Probab=39.42 E-value=23 Score=14.48 Aligned_cols=27 Identities=22% Similarity=0.279 Sum_probs=17.1
Q ss_pred CCCEECCCCHHHHHHHHHHHCCEEEEE
Q ss_conf 331002550588999974038749999
Q gi|254780869|r 444 GFLIGKFADLGIAKRRQLSFVGHLSVN 470 (559)
Q Consensus 444 G~~i~~~~~~vl~eR~~Ls~~GiV~V~ 470 (559)
|+.+|.-++.+=-=++++++.|-+.|+
T Consensus 417 GNVlGSrGSViPlFk~QI~~GgplTvT 443 (588)
T COG1086 417 GNVLGSRGSVIPLFKKQIAEGGPLTVT 443 (588)
T ss_pred CCEECCCCCCHHHHHHHHHCCCCCCCC
T ss_conf 545458877778899999759984546
No 206
>cd06811 PLPDE_III_yhfX_like Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme yhfX. This subfamily is composed of the uncharacterized protein yhfX from Escherichia coli K-12 and similar bacterial proteins. These proteins are homologous to bacterial alanine racemases (AR), which are fold type III PLP-dependent enzymes containing an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain. AR exists as homodimers with active sites that lie at the interface between the TIM barrel domain of one subunit and the beta-sandwich domain of the other subunit. It catalyzes the interconversion between L- and D-alanine, which is an essential component of the peptidoglycan layer of bacterial cell walls. Members of this subfamily may act as PLP-dependent enzymes.
Probab=39.30 E-value=23 Score=14.47 Aligned_cols=18 Identities=11% Similarity=0.185 Sum_probs=7.1
Q ss_pred HHHHHHHHHHHHHHHCCE
Q ss_conf 789999999999871886
Q gi|254780869|r 236 SVSRIRSIIDIAEQIGRK 253 (559)
Q Consensus 236 ni~Ri~~i~~~a~~~~R~ 253 (559)
|+.-+....++-++.|..
T Consensus 210 N~~Tl~~A~~~L~~~G~~ 227 (382)
T cd06811 210 NLFTLLKAKELLEKRGIE 227 (382)
T ss_pred CHHHHHHHHHHHHHCCCC
T ss_conf 299999999999975986
No 207
>COG2870 RfaE ADP-heptose synthase, bifunctional sugar kinase/adenylyltransferase [Cell envelope biogenesis, outer membrane]
Probab=39.20 E-value=23 Score=14.46 Aligned_cols=56 Identities=13% Similarity=0.376 Sum_probs=39.3
Q ss_pred HHHHHHHHHHHHHHCCCCEEEEECHHH-HHHHHHHHHHHHHHCCEEEEEC--HHHHHHHH
Q ss_conf 879999999998627983999941477-8999999999987188699844--86999999
Q gi|254780869|r 210 EKGIKKNIYDIMKNAKGCVLVTTFSSS-VSRIRSIIDIAEQIGRKIVLLG--SSLKRVVS 266 (559)
Q Consensus 210 E~~v~~~i~~~~~~~~grViv~~fasn-i~Ri~~i~~~a~~~~R~v~i~G--rs~~~~~~ 266 (559)
+..+.+.+.+.+.+.+. ++++.|+-- +.-+|.++++|++.|++|.+.. +.+.++-.
T Consensus 130 ~~~ll~~~~~~l~~~~~-vVLSDY~KG~L~~~q~~I~~ar~~~~pVLvDPKg~Df~~Y~G 188 (467)
T COG2870 130 ENKLLEKIKNALKSFDA-LVLSDYAKGVLTNVQKMIDLAREAGIPVLVDPKGKDFEKYRG 188 (467)
T ss_pred HHHHHHHHHHHHHCCCE-EEEECCCCCCCHHHHHHHHHHHHCCCCEEECCCCCCHHHHCC
T ss_conf 89999999987501898-999425553322389999999981995898989855666178
No 208
>PRK09356 imidazolonepropionase; Validated
Probab=38.59 E-value=24 Score=14.39 Aligned_cols=39 Identities=18% Similarity=0.309 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHHCCEEEEECHHHHH--HHHHHHHCCCCC
Q ss_conf 899999999998718869984486999--999887428767
Q gi|254780869|r 237 VSRIRSIIDIAEQIGRKIVLLGSSLKR--VVSVAIDVGIIK 275 (559)
Q Consensus 237 i~Ri~~i~~~a~~~~R~v~i~Grs~~~--~~~~a~~~g~l~ 275 (559)
.+.++.+++.|++.|.++.+.-..+.+ -...+.+.|.+.
T Consensus 220 ~e~~~~~~~~a~~~g~~v~~Ha~~~~~~~~~~l~~~~g~~~ 260 (401)
T PRK09356 220 VEQSERVFEAAKALGLPVKLHAEQLSNLGGAELAARYGALS 260 (401)
T ss_pred HHHHHHHHHHHHHCCCCEEEHHHHHCCCCHHHHHHHHCCCC
T ss_conf 99999999999986997277176444454799999809974
No 209
>PRK05450 3-deoxy-manno-octulosonate cytidylyltransferase; Provisional
Probab=38.54 E-value=24 Score=14.39 Aligned_cols=149 Identities=19% Similarity=0.260 Sum_probs=74.0
Q ss_pred HHHHHHHHHHH-CCCCEEEEECHHHHHHHHHHHHHHHHHCCEEEEECH----HHHHHHHHHHHCCC--------CCCCCC
Q ss_conf 99999999862-798399994147789999999999871886998448----69999998874287--------677654
Q gi|254780869|r 213 IKKNIYDIMKN-AKGCVLVTTFSSSVSRIRSIIDIAEQIGRKIVLLGS----SLKRVVSVAIDVGI--------IKKDQL 279 (559)
Q Consensus 213 v~~~i~~~~~~-~~grViv~~fasni~Ri~~i~~~a~~~~R~v~i~Gr----s~~~~~~~a~~~g~--------l~~~~~ 279 (559)
+....++..+. .-..|+|+|=+ +.|.+.|++.|-++++.+. ...|..+++..++. +..+..
T Consensus 30 I~~v~~~a~~~~~~~~V~VATdd------~~I~~~~~~~g~~~imTs~~h~~GTdRi~Ea~~~l~~~~~d~IInvQGDEP 103 (248)
T PRK05450 30 IVRVYERASKASGADRVVVATDD------ERIADAVEAFGGEVVMTSADHPSGTDRIAEAAAKLGLSDDDIVVNVQGDEP 103 (248)
T ss_pred HHHHHHHHHHCCCCCEEEEEECC------HHHHHHHHCCCCCEEECCCCCCCCHHHHHHHHHHCCCCCCCEEEEECCCCC
T ss_conf 99999999966898829997088------524435315686234046454770389999998508777868999359867
Q ss_pred CCCHHHHCCC-------CCCCEEEEEECCCCCHHHHHHHHCCCCCCCCCCC-CCCEEEEEEECCCCHHHHHHHHHHHHHC
Q ss_conf 2265662238-------8020899996696326889885202777653026-8966999961588617789999976510
Q gi|254780869|r 280 FLSDESFGLY-------PREQLIVIATGSQGEPRSALAQLSRGEMRNVKLA-EKDTVIFSSRAIPGNEVAIGHIKNRLVE 351 (559)
Q Consensus 280 ~i~~~~~~~~-------p~~~~~ii~TGsqge~~a~l~ria~~~~~~i~l~-~~D~vI~ss~~ipGnE~~~~~~~n~l~~ 351 (559)
+++++.+..+ +.-.+.-+++---. -....+.+-..+-+. .+..+.||-.+||-+...... ..
T Consensus 104 li~p~~I~~li~~~~~~~~~~i~tl~~~~~~-----~~~~~d~n~VKvv~~~~~~alyfSRs~IP~~~~~~~~----~~- 173 (248)
T PRK05450 104 LIPPELIDQVAEPLAAHPEADMATLAVPIDD-----EEELFNPNVVKVVLDKNGYALYFSRAPIPWGRDAADP----TA- 173 (248)
T ss_pred CCCHHHHHHHHHHHHHCCCCEEEEEEEECCC-----HHHHHCCCCEEEEECCCCCEEEEECCCCCCCCCCCCC----CC-
T ss_conf 7899999999999985886639999986288-----8996088834899899998405542678754443212----35-
Q ss_pred CCEEEEECCCCCCEECCCCCCHHHHHHHHHHCCC
Q ss_conf 3113430356664131578897899999975495
Q gi|254780869|r 352 QGVRVIAEDAECPVHVSGHPYPNDLKRMYQWIRP 385 (559)
Q Consensus 352 ~g~~vi~~~~~~~iH~SGHa~~edl~~li~~ikP 385 (559)
.....-|+.=.|++.+...-+..++|
T Consensus 174 --------~~~~~~hiGiy~f~~~~L~~f~~l~~ 199 (248)
T PRK05450 174 --------PTPVYRHIGIYAYRRGFLRRFVSLPP 199 (248)
T ss_pred --------CCCEEEEEEEEEEHHHHHHHHHHCCC
T ss_conf --------55516899988600999999874699
No 210
>COG0622 Predicted phosphoesterase [General function prediction only]
Probab=38.50 E-value=22 Score=14.55 Aligned_cols=23 Identities=26% Similarity=0.258 Sum_probs=9.4
Q ss_pred EEEECC----CHHHHHHHHHHHHHCCC
Q ss_conf 997045----77999999987874478
Q gi|254780869|r 388 LVAIHG----EPLHLVAHKELALQEGI 410 (559)
Q Consensus 388 ~IPvHG----e~rhl~~h~~la~~~gv 410 (559)
+.-+|| .-.+...-..+|++.+.
T Consensus 84 i~l~HGh~~~~~~~~~~l~~la~~~~~ 110 (172)
T COG0622 84 IFLTHGHLYFVKTDLSLLEYLAKELGA 110 (172)
T ss_pred EEEECCCCCCCCCCHHHHHHHHHHCCC
T ss_conf 999889834667688899999974699
No 211
>TIGR03599 YloV DAK2 domain fusion protein YloV. This model describes a protein family that contains an N-terminal DAK2 domain (pfam02734), so named because of similarity to the dihydroxyacetone kinase family family. The GTP-binding protein CgtA (a member of the obg family) is a bacterial GTPase associated with ribosome biogenesis, and it has a characteristic extension (TIGR03595) in certain lineages. This protein family described here was found, by the method of partial phylognetic profiling, to have a phylogenetic distribution strongly correlated to that of TIGR03595. This correlation implies some form of functional coupling.
Probab=38.45 E-value=24 Score=14.38 Aligned_cols=38 Identities=13% Similarity=0.241 Sum_probs=22.0
Q ss_pred HHHCCCEEEEECCCCCCEECCCCCCHHHHHHHHHHCCCCEEEE
Q ss_conf 6510311343035666413157889789999997549539997
Q gi|254780869|r 348 RLVEQGVRVIAEDAECPVHVSGHPYPNDLKRMYQWIRPQVLVA 390 (559)
Q Consensus 348 ~l~~~g~~vi~~~~~~~iH~SGHa~~edl~~li~~ikPk~~IP 390 (559)
.+...|+.++-.+. -++.||.+|+..-++.++.+.+|-
T Consensus 329 if~~~Ga~~Vi~gg-----qt~NPSt~dil~Ai~~~~a~~Vii 366 (530)
T TIGR03599 329 LFKSLGADVVIEGG-----QTMNPSTEDILKAIEKVNAKNVFV 366 (530)
T ss_pred HHHHCCCCEEECCC-----CCCCCCHHHHHHHHHHCCCCEEEE
T ss_conf 99977996996589-----989968999999998579873999
No 212
>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit; InterPro: IPR006005 One pathway for the assimilation of ammonia and glutamate biosynthesis involves glutamate synthase (1.4.1.13 from EC) which transfers the amide group of glutamine to 2-oxoglutarate to yield two molecules of glutamate. 2 L-glutamate + NADP^+ = L-glutamine + 2-oxoglutarate + NADPH + H^+. This describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form of the NADPH-dependent or NADH-dependent glutamate synthase (1.4.1.13 from EC and 1.4.1.14 from EC respectively) small subunit. There is no corresponding large subunit. ; GO: 0016639 oxidoreductase activity acting on the CH-NH2 group of donors NAD or NADP as acceptor, 0006537 glutamate biosynthetic process.
Probab=38.42 E-value=24 Score=14.37 Aligned_cols=188 Identities=20% Similarity=0.282 Sum_probs=86.9
Q ss_pred EECCCCCCCC--CCCC------EEEECCCHHHHHHHHHCCCEEEEECCCCCCCCCHHHHHHHCCCCEECCH-------HH
Q ss_conf 9776767888--7675------0287079579876641246899605430121607888986299779299-------99
Q gi|254780869|r 37 IDCGVSFPKD--DLPG------VDLVFPDITFIMKERKNLMAIFITHAHEDHYGALHDLWSFLHVPVYASP-------FA 101 (559)
Q Consensus 37 iD~G~~fp~~--~~~g------id~iiPd~~~l~~~~~~i~~i~iTH~H~DHiGalp~l~~~~~~pIY~s~-------~t 101 (559)
.|||+=|=.. ..-| |.-|||+|.=|.-+. +==-||--|+..-|+|=|+.+ .+
T Consensus 46 MDCGtPFC~~G~~I~G~~sGCP~~NlIPefNdLV~rg-------------~Wk~ALdrLh~TNNFPEFTGRvCPAPCEga 112 (517)
T TIGR01317 46 MDCGTPFCHNGALISGFDSGCPINNLIPEFNDLVFRG-------------RWKEALDRLHKTNNFPEFTGRVCPAPCEGA 112 (517)
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHCCCCCC-------------CHHHHHHHHHHHCCCCCCCCCCCCCCCCCC
T ss_conf 3377841246764355345887657772021001246-------------548999998764678656776487886300
Q ss_pred HHH-----------HHHHHHHCCCCC---CCCEEEECCCCEEEE---CCE----EEEEEECCCCCCCCCEEEEEEC---C
Q ss_conf 999-----------999998548865---562255175555776---348----9999855677776535679876---8
Q gi|254780869|r 102 IGL-----------LEAKRVYERVSK---KIPCISFQAGDKVDV---GAF----SIESVRVNHSIPETMALVIRSP---V 157 (559)
Q Consensus 102 ~~l-----------i~~~~~~~~~~~---~~~~~~i~~~~~~~~---g~~----~v~~~~~~Hsip~a~~~~I~t~---~ 157 (559)
+.| |+..+-+..... ....=....|+++-| ||- -=..-+++|++- ++|=. +
T Consensus 113 CtLgI~~dPV~IK~IE~~IIdkgf~EGWv~P~PP~krTGkkVAVVGSGPAGLAaA~qLnrAGH~VT-----VfER~DR~G 187 (517)
T TIGR01317 113 CTLGISEDPVGIKSIELEIIDKGFQEGWVQPRPPKKRTGKKVAVVGSGPAGLAAADQLNRAGHTVT-----VFEREDRVG 187 (517)
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHCCCCEECCCCCCCCCCEEEEECCCHHHHHHHHHHHHCCCCEE-----EEECCCCCC
T ss_conf 005567888533354666564131178630468874478668997567579999999853588389-----974367888
Q ss_pred CEEEE-CCCCEECCC-CCCCCCCCHHHHHHCCCCCCEEEEECCCCCC-CCC----CCCCHHHHHHHHHHHHHHCCCCEEE
Q ss_conf 17998-334024677-6654238988998608788299996356457-888----7777879999999998627983999
Q gi|254780869|r 158 GNIVH-TGDWKLDDD-AILGDVTDKDSLCAIGNEGILALMCDSTNAM-REG----TCISEKGIKKNIYDIMKNAKGCVLV 230 (559)
Q Consensus 158 g~i~y-tGDfk~d~~-p~~g~~~d~~~l~~~~~~gv~~Li~esT~~~-~~~----~~~sE~~v~~~i~~~~~~~~grViv 230 (559)
|-+-| .=|||+|.. -+ ..||..+..|||+- .+ .|+.. .+. ...|...+ +.+++-++.+- ||.
T Consensus 188 GLL~YGIPnmKLdK~e~v------~RRi~~l~aEG~~F-vt-nteiGdWdenskitnlsk~di--~~~~L~~~fDA-VVL 256 (517)
T TIGR01317 188 GLLRYGIPNMKLDKEEIV------DRRIDLLEAEGVDF-VT-NTEIGDWDENSKITNLSKKDI--SADELKEDFDA-VVL 256 (517)
T ss_pred CCCCCCCCCCCCCHHHHH------HHHHHHHHHCCCCC-CC-CCCCCCCCCCCCEECCCCCCC--CHHHHHHHCCE-EEE
T ss_conf 630248887433738899------99999987478420-17-830046534442000223426--87998714693-898
Q ss_pred EECHHHHHHHHHHHHHHHHHCCEEEEECHHHHHHHHH
Q ss_conf 9414778999999999987188699844869999998
Q gi|254780869|r 231 TTFSSSVSRIRSIIDIAEQIGRKIVLLGSSLKRVVSV 267 (559)
Q Consensus 231 ~~fasni~Ri~~i~~~a~~~~R~v~i~Grs~~~~~~~ 267 (559)
++=| ...|-+.+-||.++.+=++
T Consensus 257 a~Ga--------------~~pRDLpI~GREL~GiH~A 279 (517)
T TIGR01317 257 ATGA--------------TKPRDLPIPGRELKGIHFA 279 (517)
T ss_pred ECCC--------------CCCCCCCCCCCCCCCCHHH
T ss_conf 3378--------------8601035577664660378
No 213
>PRK12692 flgG flagellar basal body rod protein FlgG; Reviewed
Probab=38.12 E-value=24 Score=14.34 Aligned_cols=41 Identities=17% Similarity=0.310 Sum_probs=20.6
Q ss_pred CCEEEEEEECCCCCCCCCEEEEEECCCEEEEC--CCCEECCCC
Q ss_conf 34899998556777765356798768179983--340246776
Q gi|254780869|r 132 GAFSIESVRVNHSIPETMALVIRSPVGNIVHT--GDWKLDDDA 172 (559)
Q Consensus 132 g~~~v~~~~~~Hsip~a~~~~I~t~~g~i~yt--GDfk~d~~p 172 (559)
|+++-|--+.+=.|-|.-.|.+.+|+|.+.|| |+|++|...
T Consensus 84 G~l~~Tg~~lDlAI~G~GfF~V~~~~G~~~yTR~G~F~~d~~G 126 (262)
T PRK12692 84 GPLAQTGNPLDLAVNGRGWFQVTGPNGEINYTRAGSFNKNADG 126 (262)
T ss_pred CCCCCCCCCCEEEECCCCEEEEECCCCCEEEEECCCEEECCCC
T ss_conf 8742169810389868967999747995878974537899999
No 214
>pfam11495 Regulator_TrmB Archaeal transcriptional regulator TrmB. TrmB is an alpha-glucoside sensing transcriptional regulator. The protein is the transcriptional repressor for gene cluster encoding trehalose/maltose ABC transporter in T.litoralis and P.furiosus. TrmB has lost its DNA binding domain but retained its sugar recognition site. A nonreducing glucosyl residue is shared by all substrates bound to TrmB which suggests that its a common recognition motif.
Probab=37.93 E-value=24 Score=14.32 Aligned_cols=50 Identities=16% Similarity=0.236 Sum_probs=44.9
Q ss_pred CCHHHHHHHHHHHHHHCCCCEEEEECHHHHHHHHHHHHHHHHHCCEEEEE
Q ss_conf 77879999999998627983999941477899999999998718869984
Q gi|254780869|r 208 ISEKGIKKNIYDIMKNAKGCVLVTTFSSSVSRIRSIIDIAEQIGRKIVLL 257 (559)
Q Consensus 208 ~sE~~v~~~i~~~~~~~~grViv~~fasni~Ri~~i~~~a~~~~R~v~i~ 257 (559)
.|-..+.+.+++++++++.-+++++-...+.++..-+..|.+.|-.|.++
T Consensus 6 ks~~tvi~r~~e~I~~Ae~Ei~ls~p~~~l~~l~~~L~~a~drGV~V~l~ 55 (228)
T pfam11495 6 KSRETVIERARELIESAENELIVSLPPELLRYLREYLIAAADRGVTVYLL 55 (228)
T ss_pred CCHHHHHHHHHHHHHHHHEEEEEECCHHHHHHHHHHHHHHHHCCCEEEEE
T ss_conf 06999999999999865628999909999999999999998689799999
No 215
>PTZ00247 adenosine kinase; Provisional
Probab=37.70 E-value=24 Score=14.30 Aligned_cols=13 Identities=15% Similarity=0.230 Sum_probs=4.5
Q ss_pred CEEEEECCCHHHH
Q ss_conf 3999704577999
Q gi|254780869|r 386 QVLVAIHGEPLHL 398 (559)
Q Consensus 386 k~~IPvHGe~rhl 398 (559)
.++++=.-|.+.|
T Consensus 216 Dilf~Ne~Ea~~L 228 (345)
T PTZ00247 216 DILFGNEEEAKTF 228 (345)
T ss_pred CEEEECHHHHHHH
T ss_conf 8896079999999
No 216
>cd05005 SIS_PHI Hexulose-6-phosphate isomerase (PHI). PHI is a member of the SIS (Sugar ISomerase domain) superfamily. In the ribulose monophosphate pathway of formaldehyde fixation, hexulose-6-phosphate synthase catalyzes the condensation of ribulose-5-phosphate with formadelhyde to become hexulose-6-phosphate, which is then isomerized to fructose-6-phosphate by PHI.
Probab=37.66 E-value=24 Score=14.29 Aligned_cols=36 Identities=17% Similarity=0.302 Sum_probs=27.8
Q ss_pred CCCCCCEEEEEEECCCCHHHHHHHHHHHHHCCCEEEEE
Q ss_conf 02689669999615886177899999765103113430
Q gi|254780869|r 321 KLAEKDTVIFSSRAIPGNEVAIGHIKNRLVEQGVRVIA 358 (559)
Q Consensus 321 ~l~~~D~vI~ss~~ipGnE~~~~~~~n~l~~~g~~vi~ 358 (559)
.+.++|.+|+.|.. |+.+.+..+....-+.|++++.
T Consensus 72 ~i~~~Dv~I~iS~S--G~T~~~~~~~~~aK~~ga~iI~ 107 (179)
T cd05005 72 AIGPGDLLIAISGS--GETSSVVNAAEKAKKAGAKVVL 107 (179)
T ss_pred CCCCCCEEEEECCC--CCCHHHHHHHHHHHHCCCEEEE
T ss_conf 79999999998199--9956899999999987991999
No 217
>TIGR02295 HpaD 3,4-dihydroxyphenylacetate 2,3-dioxygenase; InterPro: IPR011981 This enzyme catalyses the second step in the degradation of 4-hydroxyphenylacetate to succinate and pyruvate. 4-hydroxyphenylacetate arises from the degradation of tyrosine. The substrate, 3,4-dihydroxyphenylacetate (homoprotocatechuate) arises from the action of a hydroxylase on 4-hydroxyphenylacetate. The aromatic ring is opened by this dioxygenase exo to the 3,4-diol resulting in 2-hydroxy-5-carboxymethylmuconate semialdehyde..
Probab=37.38 E-value=25 Score=14.26 Aligned_cols=33 Identities=36% Similarity=0.556 Sum_probs=20.2
Q ss_pred EEEEEECCCCCCCCCEEEEEECCC-EE-EECCCCE
Q ss_conf 999985567777653567987681-79-9833402
Q gi|254780869|r 135 SIESVRVNHSIPETMALVIRSPVG-NI-VHTGDWK 167 (559)
Q Consensus 135 ~v~~~~~~Hsip~a~~~~I~t~~g-~i-~ytGDfk 167 (559)
+||.=|=-|-|-.|+-+.|.=|+| +| +||+||-
T Consensus 241 ~IERGPGRHG~SNAffLYlrDPDghRIElYt~DY~ 275 (312)
T TIGR02295 241 SIERGPGRHGVSNAFFLYLRDPDGHRIELYTGDYL 275 (312)
T ss_pred EECCCCCCCCCCCCEEEEEECCCCCEEEEECCCCE
T ss_conf 00207787652220043334689978999828822
No 218
>PRK04813 D-alanine--D-alanyl carrier protein ligase; Provisional
Probab=37.34 E-value=25 Score=14.26 Aligned_cols=51 Identities=12% Similarity=-0.035 Sum_probs=25.5
Q ss_pred ECCCEEEEECCCCEEEEEEEECCCEEECCCCEECCCCHHHHHHHHHHHCCEEEEEE
Q ss_conf 00322789738970450123213202123310025505889999740387499999
Q gi|254780869|r 416 VRNGKMLRLFPDPIEIIDEVVHGLFLKDGFLIGKFADLGIAKRRQLSFVGHLSVNV 471 (559)
Q Consensus 416 ~~NGd~i~l~~~~~~i~~~v~~g~~~vDG~~i~~~~~~vl~eR~~Ls~~GiV~V~v 471 (559)
..-||+..++++...+.++.+ ..+-+.|..+.. .+. |....+..++--+.+
T Consensus 378 ~~TGDlg~~ddG~l~i~gR~~-~~I~~~G~~v~p-~eV---E~~l~~~p~V~~a~v 428 (503)
T PRK04813 378 YHTGDAGYLEDGLLFYQGRID-FQIKLNGYRIEL-EEI---EQQLRQSSYVESAVV 428 (503)
T ss_pred EECCCEEEEECCCEEECCCCC-CEEEECCEEECH-HHH---HHHHHHCCCCCEEEE
T ss_conf 056857999579578657663-579989899789-999---999985998358999
No 219
>TIGR03127 RuMP_HxlB 6-phospho 3-hexuloisomerase. Members of this protein family are 6-phospho 3-hexuloisomerase (PHI), or the PHI domain of a fusion protein. This enzyme is part of the ribulose monophosphate (RuMP) pathway, which in one direction removes the toxic metabolite formaldehyde by assimilation into fructose-6-phosphate. In the other direction, in species lacking a complete pentose phosphate pathway, the RuMP pathway yields ribulose-5-phosphate, necessary for nucleotide biosynthesis, at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin.
Probab=37.16 E-value=25 Score=14.24 Aligned_cols=35 Identities=23% Similarity=0.308 Sum_probs=24.7
Q ss_pred CCCCCEEEEEEECCCCHHHHHHHHHHHHHCCCEEEEE
Q ss_conf 2689669999615886177899999765103113430
Q gi|254780869|r 322 LAEKDTVIFSSRAIPGNEVAIGHIKNRLVEQGVRVIA 358 (559)
Q Consensus 322 l~~~D~vI~ss~~ipGnE~~~~~~~n~l~~~g~~vi~ 358 (559)
+.++|.+|+-|.. |+-+.+.++....-+.|++++.
T Consensus 70 i~~~Dv~I~iS~S--GeT~e~~~~~~~aK~~ga~ii~ 104 (179)
T TIGR03127 70 IKKGDLLIAISGS--GETESLVTVAKKAKEIGATVAA 104 (179)
T ss_pred CCCCCEEEEECCC--CCCHHHHHHHHHHHHCCCEEEE
T ss_conf 9999999998199--9968999999999987992999
No 220
>cd01424 MGS_CPS_II Methylglyoxal synthase-like domain from type II glutamine-dependent carbamoyl phosphate synthetase (CSP). CSP, a CarA and CarB heterodimer, catalyzes the production of carbamoyl phosphate which is subsequently employed in the metabolic pathways responsible for the synthesis of pyrimidine nucleotides or arginine. The MGS-like domain is the C-terminal domain of CarB and appears to play a regulatory role in CPS function by binding allosteric effector molecules, including UMP and ornithine.
Probab=36.59 E-value=25 Score=14.18 Aligned_cols=39 Identities=21% Similarity=0.172 Sum_probs=28.4
Q ss_pred EEEEECCCCCCCCCHHHH--HHHCCCCEECCHHHHHHHHHH
Q ss_conf 899605430121607888--986299779299999999999
Q gi|254780869|r 70 AIFITHAHEDHYGALHDL--WSFLHVPVYASPFAIGLLEAK 108 (559)
Q Consensus 70 ~i~iTH~H~DHiGalp~l--~~~~~~pIY~s~~t~~li~~~ 108 (559)
-||+|=.-.|--.++|.. +.+++..||||+.|+.+++.+
T Consensus 2 ~Vl~Sv~d~dK~e~l~~ak~l~~lGf~i~AT~GTa~~L~~~ 42 (110)
T cd01424 2 TVFISVADRDKPEAVEIAKRLAELGFKLVATEGTAKYLQEA 42 (110)
T ss_pred EEEEEEEHHHHHHHHHHHHHHHHCCCEEEECCHHHHHHHHC
T ss_conf 69999866547689999999998899999871699999864
No 221
>COG0809 QueA S-adenosylmethionine:tRNA-ribosyltransferase-isomerase (queuine synthetase) [Translation, ribosomal structure and biogenesis]
Probab=36.34 E-value=25 Score=14.15 Aligned_cols=87 Identities=18% Similarity=0.242 Sum_probs=46.7
Q ss_pred CCCCCCCCCHHHHHHCCCCCCEE-----EEECCCCCCCCCCC--CCHHHHHHHHHHHHHHCCCCEEEEECHHHHHHHHHH
Q ss_conf 76654238988998608788299-----99635645788877--778799999999986279839999414778999999
Q gi|254780869|r 171 DAILGDVTDKDSLCAIGNEGILA-----LMCDSTNAMREGTC--ISEKGIKKNIYDIMKNAKGCVLVTTFSSSVSRIRSI 243 (559)
Q Consensus 171 ~p~~g~~~d~~~l~~~~~~gv~~-----Li~esT~~~~~~~~--~sE~~v~~~i~~~~~~~~grViv~~fasni~Ri~~i 243 (559)
.|.-|-.++.+.|.++.++||.. =+.-+|. +|-.+ ..|+..-....++ =.....+
T Consensus 180 APTAGLHFt~~LL~kLk~kGv~~afvTLHVGaGTF--~pV~~~~i~eH~MH~E~~~v----------------~~eta~~ 241 (348)
T COG0809 180 APTAGLHFTEELLEKLKAKGVEIAFVTLHVGAGTF--RPVKVENIEEHKMHSEYYEV----------------PQETADA 241 (348)
T ss_pred CCCCCCCCCHHHHHHHHHCCCEEEEEEEEECCCCC--CCCEECCCCCCCCCHHHEEC----------------CHHHHHH
T ss_conf 47687778999999999779539999999646554--34120443344430552325----------------9999999
Q ss_pred HHHHHHHCCEEEEECHHHHHHHHHHHHCCCCC
Q ss_conf 99998718869984486999999887428767
Q gi|254780869|r 244 IDIAEQIGRKIVLLGSSLKRVVSVAIDVGIIK 275 (559)
Q Consensus 244 ~~~a~~~~R~v~i~Grs~~~~~~~a~~~g~l~ 275 (559)
++++++.|++|+-+|-+-.|.++.+...+-++
T Consensus 242 i~~~k~~GgRIiaVGTTs~R~LEsa~~~~~~~ 273 (348)
T COG0809 242 INAAKARGGRIIAVGTTSVRTLESAAREAGLK 273 (348)
T ss_pred HHHHHHCCCEEEEECCHHHHHHHHHHCCCCCC
T ss_conf 99999739849998161577788775137767
No 222
>TIGR00520 asnASE_II L-asparaginases, type II; InterPro: IPR004550 L-asparaginase catalyses the conversion of L-asparagine to L-aspartate. Two related families of asparaginase (L-asparagine amidohydrolase, 3.5.1.1 from EC) are designated type I and type II according to the terminology in Escherichia coli, which has both: L-asparaginase I is a low-affinity enzyme found in the cytoplasm, while L-asparaginase II is a high-affinity periplasmic enzyme synthesized with a cleavable signal sequence. This family describes L-asparaginases related to type II of E. coli. Both the cytoplasmic and the cell wall asparaginases of Saccharomyces cerevisiae belong to this set. Members of this set from Acinetobacter glutaminasificans and Pseudomonas fluorescens are described as having both glutaminase and asparaginase activities , . All members are homotetrameric. ; GO: 0004067 asparaginase activity, 0006528 asparagine metabolic process.
Probab=36.12 E-value=18 Score=15.32 Aligned_cols=170 Identities=18% Similarity=0.236 Sum_probs=72.7
Q ss_pred HCCCEEEEECCCCCCCCCHHHHHHH-C---CCCEEC-C---HHH-------HHHHHHH-HHHCCCCC-CCCEEEECCCCE
Q ss_conf 1246899605430121607888986-2---997792-9---999-------9999999-98548865-562255175555
Q gi|254780869|r 66 KNLMAIFITHAHEDHYGALHDLWSF-L---HVPVYA-S---PFA-------IGLLEAK-RVYERVSK-KIPCISFQAGDK 128 (559)
Q Consensus 66 ~~i~~i~iTH~H~DHiGalp~l~~~-~---~~pIY~-s---~~t-------~~li~~~-~~~~~~~~-~~~~~~i~~~~~ 128 (559)
++++|++||||- |=+-=-.|++.. . +-||-. . |-| ..|..+- ......+. +=-+..+ ++.
T Consensus 104 ~d~~G~ViTHGT-DTlEETAyFL~LTv~sG~KPVV~VGaMRPaT~~SADGP~NLYnAV~vA~~~kS~grGvLV~l--ND~ 180 (360)
T TIGR00520 104 DDVDGIVITHGT-DTLEETAYFLDLTVKSGDKPVVLVGAMRPATSVSADGPLNLYNAVSVAANEKSAGRGVLVVL--NDR 180 (360)
T ss_pred CCCCEEEEECCC-CCHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHCCCCCCHHHHHHHHHCCHHHCCCCEEEEE--CCC
T ss_conf 578727992478-84678887776432048976798707852455325752115789976507545589579983--582
Q ss_pred EEECCEEEEEEECCCCCCCCCEEEEEEC-CCEE--EECCCCEECCCCC--CCCCC--CHHHHHH---CCCCCCEEEEECC
Q ss_conf 7763489999855677776535679876-8179--9833402467766--54238--9889986---0878829999635
Q gi|254780869|r 129 VDVGAFSIESVRVNHSIPETMALVIRSP-VGNI--VHTGDWKLDDDAI--LGDVT--DKDSLCA---IGNEGILALMCDS 198 (559)
Q Consensus 129 ~~~g~~~v~~~~~~Hsip~a~~~~I~t~-~g~i--~ytGDfk~d~~p~--~g~~~--d~~~l~~---~~~~gv~~Li~es 198 (559)
+ ++.+.|+=-.++| . ++ ++.+ .|.+ +|-+|..|...|+ +|..+ ++..|.+ +++ |+.+=
T Consensus 181 i-~sgr~vTKTntt~-~-~T----F~~~n~G~lG~~~n~~i~y~~~P~~kht~~t~F~~s~L~~p~~LP~--V~IiY--- 248 (360)
T TIGR00520 181 I-ASGRYVTKTNTTS-L-DT----FKSENQGYLGYIHNGKIDYYYPPVRKHTTDTPFDVSNLDEPFKLPK--VDIIY--- 248 (360)
T ss_pred C-CCCEEEEECCCCC-C-CC----CCCCCCCCEEEEECCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCE--EEEEE---
T ss_conf 0-3640265403686-4-31----2102554104676271564136678888677523300778663880--37871---
Q ss_pred CCCCCCCCCCCHHHH-HHHHHHHHHH--CCCCEEEEEC-HHHHHH-HHHHHHHH-HHHCCEEEEECHHH
Q ss_conf 645788877778799-9999999862--7983999941-477899-99999999-87188699844869
Q gi|254780869|r 199 TNAMREGTCISEKGI-KKNIYDIMKN--AKGCVLVTTF-SSSVSR-IRSIIDIA-EQIGRKIVLLGSSL 261 (559)
Q Consensus 199 T~~~~~~~~~sE~~v-~~~i~~~~~~--~~grViv~~f-asni~R-i~~i~~~a-~~~~R~v~i~Grs~ 261 (559)
+ -+.. .+.+-+...+ ++| |++|.. +=|+.. .....+-| ++.|=.||---|++
T Consensus 249 --~--------y~~~np~~~~~A~~d~Ga~G-IV~AG~GnGsl~~~~~~~~~~a~k~~Gv~iVrS~R~~ 306 (360)
T TIGR00520 249 --A--------YQNANPPLLVKAVVDAGAKG-IVLAGVGNGSLSAAALKVNETAAKEGGVPIVRSSRVP 306 (360)
T ss_pred --C--------CCCCCHHHHHHHHHHCCCCE-EEEEECCCCCCCHHHHHHHHHHHHCCCEEEEEEEECC
T ss_conf --2--------34778778999999668984-8996137655016889999999971882799743218
No 223
>PRK07778 consensus
Probab=35.58 E-value=26 Score=14.07 Aligned_cols=17 Identities=18% Similarity=0.264 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHCCE
Q ss_conf 89999999999871886
Q gi|254780869|r 237 VSRIRSIIDIAEQIGRK 253 (559)
Q Consensus 237 i~Ri~~i~~~a~~~~R~ 253 (559)
-+++++++++|++.+--
T Consensus 181 ~~~l~~l~~la~~~~i~ 197 (386)
T PRK07778 181 PEELAAIASWCEASGVR 197 (386)
T ss_pred HHHHHHHHHHHHHCCEE
T ss_conf 79999999998537879
No 224
>TIGR02684 dnstrm_HI1420 probable addiction module antidote protein; InterPro: IPR014057 Members of this strictly bacterial protein family are small, at roughly 100 amino acids. The gene is almost invariably the downstream member of a gene pair. It is a predicted DNA-binding protein from a clade within the helix-turn-helix family IPR001387 from INTERPRO. These gene pairs, when found on the bacterial chromosome, are located often with prophage regions, but also both in integrated plasmid regions and in housekeeping gene regions. Analysis suggests that the gene pair may serve as an addiction module..
Probab=35.54 E-value=13 Score=16.14 Aligned_cols=59 Identities=10% Similarity=0.296 Sum_probs=44.6
Q ss_pred CCCCHHHHHHHHHHHHHHC--CCCEEEEECHHHHHHHHHHHHHHHHHCCEEEEECHHHHHHHHHHHHCC
Q ss_conf 7777879999999998627--983999941477899999999998718869984486999999887428
Q gi|254780869|r 206 TCISEKGIKKNIYDIMKNA--KGCVLVTTFSSSVSRIRSIIDIAEQIGRKIVLLGSSLKRVVSVAIDVG 272 (559)
Q Consensus 206 ~~~sE~~v~~~i~~~~~~~--~grViv~~fasni~Ri~~i~~~a~~~~R~v~i~Grs~~~~~~~a~~~g 272 (559)
+=.+|.+|...+.++|++. +-+.|..+-. +|+|-.-+-++|+++| +|| +..+...+.-|
T Consensus 10 ~L~~~E~~a~YL~~a~e~gGdDp~~~~~ALG-~iArArGMtqlA~~tG-----lsR--EsLYkALs~~G 70 (91)
T TIGR02684 10 YLKTDEEVAEYLAQALEDGGDDPALIAAALG-VIARARGMTQLAKKTG-----LSR--ESLYKALSGGG 70 (91)
T ss_pred HCCCHHHHHHHHHHHHHCCCCCHHHHHHHHH-HHHHHCCHHHHHHHHC-----CCH--HHHHHHHCCCC
T ss_conf 0468789999999997436999889999988-9986516578999828-----767--88788735688
No 225
>PRK12643 flgF flagellar basal body rod protein FlgF; Reviewed
Probab=35.01 E-value=27 Score=14.01 Aligned_cols=44 Identities=14% Similarity=0.289 Sum_probs=29.8
Q ss_pred EECCEEEEEEECCCCCCCCCEEEEEECCCEEEEC--CCCEECCCCC
Q ss_conf 7634899998556777765356798768179983--3402467766
Q gi|254780869|r 130 DVGAFSIESVRVNHSIPETMALVIRSPVGNIVHT--GDWKLDDDAI 173 (559)
Q Consensus 130 ~~g~~~v~~~~~~Hsip~a~~~~I~t~~g~i~yt--GDfk~d~~p~ 173 (559)
+=|.+.-|--+.+=.|-|.-.|.+.+++|...|| |+|++|....
T Consensus 67 ~qG~l~~Tg~~LDlAI~G~GfF~V~~~~G~~aYTR~G~f~vd~~G~ 112 (209)
T PRK12643 67 SQGTMNFSGRPLDVALQQDGYLAVQLPDGSEAYTRNGNIQISANGQ 112 (209)
T ss_pred CCCCEEECCCCEEEEEECCCEEEEECCCCCEEEEECCCEEECCCCC
T ss_conf 6757351598303998089589998589956788788715999987
No 226
>pfam06516 NUP Purine nucleoside permease (NUP). This family consists of several purine nucleoside permease from both bacteria and fungi.
Probab=34.95 E-value=27 Score=14.00 Aligned_cols=59 Identities=12% Similarity=0.136 Sum_probs=23.7
Q ss_pred CCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECHHHHHHHHHHHHHH
Q ss_conf 788299996356457888777787999999999862798399994147789999999999
Q gi|254780869|r 188 NEGILALMCDSTNAMREGTCISEKGIKKNIYDIMKNAKGCVLVTTFSSSVSRIRSIIDIA 247 (559)
Q Consensus 188 ~~gv~~Li~esT~~~~~~~~~sE~~v~~~i~~~~~~~~grViv~~fasni~Ri~~i~~~a 247 (559)
++.-.++.||..-++.--+..--.+-.+...++..+-+| .+++|==.+-+.++.+.+++
T Consensus 186 ~~pP~V~~gDtltsdtywhG~~l~~~a~~w~~~~T~G~g-~y~tTa~EDnatl~aL~r~a 244 (315)
T pfam06516 186 QKPPFVLKCDTLTGDTYWHGTLLNEWAEDWVKLWTDGSG-NYCTTAQEDNATLEALTRLA 244 (315)
T ss_pred CCCCEEEECCCCCCCCEEECHHHHHHHHHHHHHHCCCCC-CEECHHHHHHHHHHHHHHHH
T ss_conf 498848776731446601164679999999999708866-56313433378999999887
No 227
>PRK11148 cyclic 3',5'-adenosine monophosphate phosphodiesterase; Provisional
Probab=34.89 E-value=27 Score=14.00 Aligned_cols=83 Identities=20% Similarity=0.221 Sum_probs=40.6
Q ss_pred EEEEEECCCCCCCCCEEEEEEECCCCCCEEEEEECCCCC-CCCCCCCEEEE---CCCHHHHHHHHHCCCEEEEE-----C
Q ss_conf 399994068683466069999517778648999776767-88876750287---07957987664124689960-----5
Q gi|254780869|r 5 ELVFLPLGGVGEIGMNMALYGYGSPSSRKWIMIDCGVSF-PKDDLPGVDLV---FPDITFIMKERKNLMAIFIT-----H 75 (559)
Q Consensus 5 ~i~~~~lGG~~eiG~N~~~~~~~~~~~~~~iiiD~G~~f-p~~~~~gid~i---iPd~~~l~~~~~~i~~i~iT-----H 75 (559)
.+-.+|+.|-+ .|.++.. =|+=+.- ++....|+|.- -.-++.+..+..++++|++| .
T Consensus 3 ~~~~~p~~~~~----~mkiiQI----------SD~HL~~~~~~~~~g~dt~~~l~~vl~~i~~~~~~~D~viiTGDLs~d 68 (275)
T PRK11148 3 SLLTLPLAGEA----RVRILQI----------TDTHLFADEHETLLGVNTWESYQAVLEAIRAEQHEFDLIVATGDLAQD 68 (275)
T ss_pred CEEECCCCCCC----CEEEEEE----------ECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCEEEECCCCCCC
T ss_conf 41755678998----7799998----------367758788763527698999999999998459998899976402589
Q ss_pred CCCCCCCCHHHHHHHCCCCEECCHHH
Q ss_conf 43012160788898629977929999
Q gi|254780869|r 76 AHEDHYGALHDLWSFLHVPVYASPFA 101 (559)
Q Consensus 76 ~H~DHiGalp~l~~~~~~pIY~s~~t 101 (559)
+..+-+-.+-.++..+++|+|.-+..
T Consensus 69 gs~esY~~l~~~L~~l~~P~~~lPGN 94 (275)
T PRK11148 69 HSAEAYQHFAEGIAPLRKPCVWLPGN 94 (275)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEECCC
T ss_conf 99999999999997269998995887
No 228
>cd06397 PB1_UP1 Uncharacterized protein 1. The PB1 domain is a modular domain mediating specific protein-protein interaction which play a role in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions.
Probab=34.78 E-value=27 Score=13.98 Aligned_cols=58 Identities=22% Similarity=0.335 Sum_probs=42.5
Q ss_pred CCEEEEEEECCCCHHHHHHHHHHHH----HCCCEEEEECCCCCCEECCCCCCHHHHHHHHHHCCCC
Q ss_conf 9669999615886177899999765----1031134303566641315788978999999754953
Q gi|254780869|r 325 KDTVIFSSRAIPGNEVAIGHIKNRL----VEQGVRVIAEDAECPVHVSGHPYPNDLKRMYQWIRPQ 386 (559)
Q Consensus 325 ~D~vI~ss~~ipGnE~~~~~~~n~l----~~~g~~vi~~~~~~~iH~SGHa~~edl~~li~~ikPk 386 (559)
||+==|+++.+|.++....++.+-. .+.|+..+-.+.+ .|..| +.+||.+.++...+.
T Consensus 9 g~~rR~~f~~~ptw~~La~kL~~LY~lp~~~vgVtYiD~d~D-eITls---S~~ELqe~yr~~~~~ 70 (82)
T cd06397 9 GDTRRIVFPDIPTWEALASKLENLYNLPEIKVGVTYIDNDND-EITLS---SNKELQDFYRLSHRE 70 (82)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHCCCHHHEEEEEECCCCC-EEEEC---CHHHHHHHHHHCCCC
T ss_conf 633578469985189999999987614042266798727997-67865---689999999861214
No 229
>pfam03949 Malic_M Malic enzyme, NAD binding domain.
Probab=34.48 E-value=27 Score=13.95 Aligned_cols=75 Identities=21% Similarity=0.205 Sum_probs=47.9
Q ss_pred HHHHHHHHCCCCEEEEECH-HHHHHHHHHHHHHHHHCCEEEEECHHHHHHHHHHHHCCCCC-CCC-CCCCHHHHCCCCCC
Q ss_conf 9999986279839999414-77899999999998718869984486999999887428767-765-42265662238802
Q gi|254780869|r 216 NIYDIMKNAKGCVLVTTFS-SSVSRIRSIIDIAEQIGRKIVLLGSSLKRVVSVAIDVGIIK-KDQ-LFLSDESFGLYPRE 292 (559)
Q Consensus 216 ~i~~~~~~~~grViv~~fa-sni~Ri~~i~~~a~~~~R~v~i~Grs~~~~~~~a~~~g~l~-~~~-~~i~~~~~~~~p~~ 292 (559)
++.++++..|=-|++.++. .++..-.-+-..|+-+.|+|++- |. |.+ .-..++++...-+
T Consensus 97 ~L~e~v~~~kP~vlIG~S~~~g~ft~evv~~Ma~~~~~PIIFa----------------LSNPt~~aE~~peda~~~t~- 159 (255)
T pfam03949 97 TLAEAVKGAKPDVLIGVSGVPGVFTEEIVRAMAEHTERPIIFA----------------LSNPTPKAEITPEEAYKWTA- 159 (255)
T ss_pred CHHHHHHCCCCCEEEEECCCCCCCCHHHHHHHHHCCCCCEEEE----------------CCCCCCCCCCCHHHHHHHCC-
T ss_conf 9999986268877998168889889999999981699984876----------------68989877779899998549-
Q ss_pred CEEEEEECCCCCHHH
Q ss_conf 089999669632688
Q gi|254780869|r 293 QLIVIATGSQGEPRS 307 (559)
Q Consensus 293 ~~~ii~TGsqge~~a 307 (559)
...+++|||+.+|..
T Consensus 160 G~ai~ATGSpf~pv~ 174 (255)
T pfam03949 160 GRALFATGSPFPPVE 174 (255)
T ss_pred CEEEEEECCCCCCEE
T ss_conf 928998589877600
No 230
>COG0436 Aspartate/tyrosine/aromatic aminotransferase [Amino acid transport and metabolism]
Probab=34.39 E-value=27 Score=13.94 Aligned_cols=14 Identities=29% Similarity=0.430 Sum_probs=9.2
Q ss_pred EEECCCCCCCCCCC
Q ss_conf 99776767888767
Q gi|254780869|r 36 MIDCGVSFPKDDLP 49 (559)
Q Consensus 36 iiD~G~~fp~~~~~ 49 (559)
++|.|++.|+...|
T Consensus 30 vi~l~iG~Pd~~~p 43 (393)
T COG0436 30 VIDLSIGEPDFPTP 43 (393)
T ss_pred EEECCCCCCCCCCC
T ss_conf 79756889999986
No 231
>COG0505 CarA Carbamoylphosphate synthase small subunit [Amino acid transport and metabolism / Nucleotide transport and metabolism]
Probab=34.08 E-value=28 Score=13.91 Aligned_cols=42 Identities=12% Similarity=0.088 Sum_probs=22.3
Q ss_pred ECHHHHHHHHHHHHHHHHHCCEEEEECHHHHHHHHHHHHCCCC
Q ss_conf 4147789999999999871886998448699999988742876
Q gi|254780869|r 232 TFSSSVSRIRSIIDIAEQIGRKIVLLGSSLKRVVSVAIDVGII 274 (559)
Q Consensus 232 ~fasni~Ri~~i~~~a~~~~R~v~i~Grs~~~~~~~a~~~g~l 274 (559)
...||--.-+++-+..++.|- +.+.|=.-.......++-|-+
T Consensus 86 ~~~Sn~ra~~sL~~~Lk~~gi-pgI~GIDTRaLtr~iR~~G~m 127 (368)
T COG0505 86 ERPSNWRATESLDEYLKEEGI-PGIAGIDTRALTRKIREKGAM 127 (368)
T ss_pred CCCCCCCCCCCHHHHHHHCCC-CCEECCCHHHHHHHHHHCCCC
T ss_conf 665752300589999997699-775055189999999866973
No 232
>PRK06056 consensus
Probab=34.07 E-value=28 Score=13.91 Aligned_cols=19 Identities=21% Similarity=0.265 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHCCEEE
Q ss_conf 8999999999987188699
Q gi|254780869|r 237 VSRIRSIIDIAEQIGRKIV 255 (559)
Q Consensus 237 i~Ri~~i~~~a~~~~R~v~ 255 (559)
.++++.++++|++++--|+
T Consensus 187 ~e~l~~l~~la~~~~i~ii 205 (402)
T PRK06056 187 PEQVRAIGRWAAEHGIWVI 205 (402)
T ss_pred HHHHHHHHHHHHHHCCCEE
T ss_conf 7889999999997146155
No 233
>COG1759 5-formaminoimidazole-4-carboxamide-1-beta-D-ribofuranosyl 5'-monophosphate synthetase (purine biosynthesis) [Nucleotide transport and metabolism]
Probab=34.03 E-value=28 Score=13.90 Aligned_cols=39 Identities=26% Similarity=0.351 Sum_probs=30.8
Q ss_pred HHHHHCCCEEEEECCCCCCCCCHHHHHHHCCCCEECCHH
Q ss_conf 766412468996054301216078889862997792999
Q gi|254780869|r 62 MKERKNLMAIFITHAHEDHYGALHDLWSFLHVPVYASPF 100 (559)
Q Consensus 62 ~~~~~~i~~i~iTH~H~DHiGalp~l~~~~~~pIY~s~~ 100 (559)
++..-+..+|||-|+..--.-++-.+..++.+|+|+.+.
T Consensus 79 qe~L~~~n~I~IP~gSfv~Y~G~d~ie~~~~vP~fGnR~ 117 (361)
T COG1759 79 QEELRELNAIFIPHGSFVAYVGYDGIENEFEVPMFGNRE 117 (361)
T ss_pred HHHHHHCCEEEECCCCEEEEECCHHHHHCCCCCCCCCHH
T ss_conf 999987584994278647885314464411466116676
No 234
>PRK09197 fructose-bisphosphate aldolase; Provisional
Probab=34.00 E-value=28 Score=13.90 Aligned_cols=44 Identities=7% Similarity=0.228 Sum_probs=35.1
Q ss_pred HHHHHHHHHHC-CCCEEEEEC-HHHHHHHHHHHHHHHHHCCEEEEE
Q ss_conf 99999998627-983999941-477899999999998718869984
Q gi|254780869|r 214 KKNIYDIMKNA-KGCVLVTTF-SSSVSRIRSIIDIAEQIGRKIVLL 257 (559)
Q Consensus 214 ~~~i~~~~~~~-~grViv~~f-asni~Ri~~i~~~a~~~~R~v~i~ 257 (559)
.+.+.++++.+ ++.--|++| ..|++-++.++++|++.+-+|.+-
T Consensus 6 g~~lkemL~~A~~~~YAV~AfNv~n~e~~~Avl~AAee~~sPvIiq 51 (349)
T PRK09197 6 GDDVQKMFDRAKENGFALPAVNCVGTDSINAVLEGAAKAKSPVIIQ 51 (349)
T ss_pred HHHHHHHHHHHHHCCCEEEEEEECCHHHHHHHHHHHHHHCCCEEEE
T ss_conf 8999999999998897799864798999999999999978899999
No 235
>PRK07998 gatY putative fructose-1,6-bisphosphate aldolase; Reviewed
Probab=33.80 E-value=28 Score=13.88 Aligned_cols=42 Identities=19% Similarity=0.240 Sum_probs=32.6
Q ss_pred HHHHHHHHC-CCCEEEEEC-HHHHHHHHHHHHHHHHHCCEEEEE
Q ss_conf 999998627-983999941-477899999999998718869984
Q gi|254780869|r 216 NIYDIMKNA-KGCVLVTTF-SSSVSRIRSIIDIAEQIGRKIVLL 257 (559)
Q Consensus 216 ~i~~~~~~~-~grViv~~f-asni~Ri~~i~~~a~~~~R~v~i~ 257 (559)
++.++++.+ ++.--|++| ..|.+-++.++++|++.+.+|.+.
T Consensus 5 s~k~lL~~A~~~~yAVgaFNv~n~e~~~Avi~AAee~~sPvIlq 48 (283)
T PRK07998 5 NGRILLDRIQEKHVLAGAFNTTNLETTISILNAIERSGLPNFIQ 48 (283)
T ss_pred CHHHHHHHHHHCCCEEEEEEECCHHHHHHHHHHHHHHCCCEEEE
T ss_conf 58999999998893799878899999999999999978698999
No 236
>PTZ00237 acetyl-CoA synthetase; Provisional
Probab=33.76 E-value=28 Score=13.87 Aligned_cols=52 Identities=10% Similarity=-0.063 Sum_probs=30.3
Q ss_pred ECCCEEEEECCC-CEEEEEEEECCCEEECCCCEECCCCHHHHHHHHHHHCCEEEEEEE
Q ss_conf 003227897389-704501232132021233100255058899997403874999999
Q gi|254780869|r 416 VRNGKMLRLFPD-PIEIIDEVVHGLFLKDGFLIGKFADLGIAKRRQLSFVGHLSVNVL 472 (559)
Q Consensus 416 ~~NGd~i~l~~~-~~~i~~~v~~g~~~vDG~~i~~~~~~vl~eR~~Ls~~GiV~V~vi 472 (559)
..-||...++++ ...+.++.+ .-+-+-|..++..+ =|+..++..+|.-+.|+
T Consensus 494 ~~tGD~~~~DedG~~~i~GR~D-D~I~~~G~rI~~~E----IE~~l~~hp~V~EaaVV 546 (649)
T PTZ00237 494 YNSGDLGFKDENGYYGIVSRSD-DQIKISGNKVQLNT----IETSILKHPLVLECCSI 546 (649)
T ss_pred EECCCEEEECCCCCEEEEECCC-CEEECCCEEECHHH----HHHHHHHCCCCCEEEEE
T ss_conf 8789589993899799996664-68985989998999----99999849991458899
No 237
>pfam06415 iPGM_N BPG-independent PGAM N-terminus (iPGM_N). This family represents the N-terminal region of the 2,3-bisphosphoglycerate-independent phosphoglycerate mutase (or phosphoglyceromutase or BPG-independent PGAM) protein (EC:5.4.2.1). The family is found in conjunction with pfam01676 (located in the C-terminal region of the protein).
Probab=33.73 E-value=28 Score=13.87 Aligned_cols=11 Identities=36% Similarity=0.637 Sum_probs=8.0
Q ss_pred CCCCCCEEEEE
Q ss_conf 02689669999
Q gi|254780869|r 321 KLAEKDTVIFS 331 (559)
Q Consensus 321 ~l~~~D~vI~s 331 (559)
.+++||.|||.
T Consensus 165 ~i~dgD~vif~ 175 (223)
T pfam06415 165 TIKDGDAVIFF 175 (223)
T ss_pred CCCCCCEEEEE
T ss_conf 65799989997
No 238
>PRK08912 hypothetical protein; Provisional
Probab=33.70 E-value=28 Score=13.87 Aligned_cols=16 Identities=0% Similarity=0.100 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHCC
Q ss_conf 8999999999987188
Q gi|254780869|r 237 VSRIRSIIDIAEQIGR 252 (559)
Q Consensus 237 i~Ri~~i~~~a~~~~R 252 (559)
-++++.++++|++.+-
T Consensus 178 ~e~l~~l~~~a~~~~i 193 (387)
T PRK08912 178 REDLALLAEFCQRHDA 193 (387)
T ss_pred HHHHHHHHHHHHHCCE
T ss_conf 9999999998865797
No 239
>COG2845 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=33.68 E-value=28 Score=13.86 Aligned_cols=97 Identities=18% Similarity=0.264 Sum_probs=52.1
Q ss_pred EEEECC-CEEEECCCCEECCCCCCCCCCCHHHHHHCCC-CC--CEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHC-CC
Q ss_conf 798768-1799833402467766542389889986087-88--2999963564578887777879999999998627-98
Q gi|254780869|r 152 VIRSPV-GNIVHTGDWKLDDDAILGDVTDKDSLCAIGN-EG--ILALMCDSTNAMREGTCISEKGIKKNIYDIMKNA-KG 226 (559)
Q Consensus 152 ~I~t~~-g~i~ytGDfk~d~~p~~g~~~d~~~l~~~~~-~g--v~~Li~esT~~~~~~~~~sE~~v~~~i~~~~~~~-~g 226 (559)
+.+.++ .+|++.|||-. +..+. .....++. -+ |..+-.-||..-++.+ -+--+++.+++.++ +-
T Consensus 110 ~~k~~~a~kvLvvGDslm------~gla~-gl~~al~t~~~i~i~~~sn~SSGlvr~dY----fdWpk~i~~~l~~~~~~ 178 (354)
T COG2845 110 AAKSRDADKVLVVGDSLM------QGLAE-GLDKALATSPGITIVTRSNGSSGLVRDDY----FDWPKAIPELLDKHPKP 178 (354)
T ss_pred HHHCCCCCEEEEECHHHH------HHHHH-HHHHHHCCCCCCEEEEEECCCCCCCCCCC----CCCHHHHHHHHHHCCCC
T ss_conf 652777778999641776------66489-99998623888579984237777214330----34077899999736996
Q ss_pred CEEEEECHHH-----------------------HHHHHHHHHHHHHHCCEEEEECH
Q ss_conf 3999941477-----------------------89999999999871886998448
Q gi|254780869|r 227 CVLVTTFSSS-----------------------VSRIRSIIDIAEQIGRKIVLLGS 259 (559)
Q Consensus 227 rViv~~fasn-----------------------i~Ri~~i~~~a~~~~R~v~i~Gr 259 (559)
-++|-.+.+| --|+-.++++|.+..-+|++.|-
T Consensus 179 a~vVV~lGaND~q~~~~gd~~~kf~S~~W~~eY~kRvd~~l~ia~~~~~~V~WvGm 234 (354)
T COG2845 179 AAVVVMLGANDRQDFKVGDVYEKFRSDEWTKEYEKRVDAILKIAHTHKVPVLWVGM 234 (354)
T ss_pred CEEEEEECCCCHHHCCCCCEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEC
T ss_conf 28999946898775526770330376689999999999999986026786799607
No 240
>PRK05852 acyl-CoA synthetase; Validated
Probab=33.44 E-value=28 Score=13.84 Aligned_cols=52 Identities=17% Similarity=0.201 Sum_probs=30.7
Q ss_pred ECCCEEEEECCC-CEEEEEEEECCCEEECCCCEECCCCHHHHHHHHHHHCCEEEEEEE
Q ss_conf 003227897389-704501232132021233100255058899997403874999999
Q gi|254780869|r 416 VRNGKMLRLFPD-PIEIIDEVVHGLFLKDGFLIGKFADLGIAKRRQLSFVGHLSVNVL 472 (559)
Q Consensus 416 ~~NGd~i~l~~~-~~~i~~~v~~g~~~vDG~~i~~~~~~vl~eR~~Ls~~GiV~V~vi 472 (559)
..-||+..+.++ ...+.++.+- -+-+.|..+.. .+ =|+..++..++.-+.++
T Consensus 406 ~~TGDlg~~d~dG~l~~~GR~~d-~ik~~G~~I~~-~e---IE~~l~~~~~V~~aavv 458 (530)
T PRK05852 406 LRTGDLGSLSAAGDLSIRGRIKE-LINRGGEKISP-ER---VEGVLASHPNVMEAAVF 458 (530)
T ss_pred CCCCCEEEECCCCCEEEEEECCC-EEEECCEEECH-HH---HHHHHHHCCCCCEEEEE
T ss_conf 62486399947971999970538-79999999899-99---99999849982089999
No 241
>pfam04309 G3P_antiterm Glycerol-3-phosphate responsive antiterminator. Intracellular glycerol is usually converted to glycerol-3-phosphate in an ATP-requiring phosphorylation reaction catalysed by glycerol kinase (GlpK) glycerol-3-phosphate activates the antiterminator GlpP.
Probab=33.23 E-value=28 Score=13.81 Aligned_cols=41 Identities=12% Similarity=0.285 Sum_probs=30.4
Q ss_pred HHHHHHHHHCCCCEEEEECHHHHHHHHHHHHHHHHHCCEEEEE
Q ss_conf 9999998627983999941477899999999998718869984
Q gi|254780869|r 215 KNIYDIMKNAKGCVLVTTFSSSVSRIRSIIDIAEQIGRKIVLL 257 (559)
Q Consensus 215 ~~i~~~~~~~~grViv~~fasni~Ri~~i~~~a~~~~R~v~i~ 257 (559)
+.+++.+ +++..+++-.+ .|+..+.++.+.+++.|+++++.
T Consensus 9 ~~l~~al-~s~~~~vfll~-g~I~~l~~~v~~~k~~gK~vfVH 49 (174)
T pfam04309 9 KDLDRAL-ESEYQVVFLLT-GHILNLKEIVKLLKQRGKTVFVH 49 (174)
T ss_pred HHHHHHH-CCCCCEEEEEC-CCHHHHHHHHHHHHHCCCEEEEE
T ss_conf 8999998-49998999955-80878999999999879989998
No 242
>COG1880 CdhB CO dehydrogenase/acetyl-CoA synthase epsilon subunit [Energy production and conversion]
Probab=33.18 E-value=28 Score=13.81 Aligned_cols=61 Identities=20% Similarity=0.238 Sum_probs=40.7
Q ss_pred HHHHHHHHHHCCCC-EEEEECHHHHHHHHHHHHHHHHHCCEEEEECHHHHHHHHHHHHCCCC
Q ss_conf 99999998627983-99994147789999999999871886998448699999988742876
Q gi|254780869|r 214 KKNIYDIMKNAKGC-VLVTTFSSSVSRIRSIIDIAEQIGRKIVLLGSSLKRVVSVAIDVGII 274 (559)
Q Consensus 214 ~~~i~~~~~~~~gr-Viv~~fasni~Ri~~i~~~a~~~~R~v~i~Grs~~~~~~~a~~~g~l 274 (559)
.+-....|+.++.- .+|..-+-+=+=..-+.+++++.+-+++-.|-||.+.++...+..|.
T Consensus 25 p~v~ammIkkAkrPLlivGp~~~dee~~E~~vKi~ekfnipivaTa~~~~~~~~~~i~~~~~ 86 (170)
T COG1880 25 PEVVAMMIKKAKRPLLIVGPLALDEELLELAVKIIEKFNIPIVATASSMGNLIGRGIGSEYI 86 (170)
T ss_pred CHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHCCCCEEECCHHHCCHHHCCCCCCHH
T ss_conf 48999999862795498655325889999999999864874475321102023246563222
No 243
>PRK12640 flgF flagellar basal body rod protein FlgF; Reviewed
Probab=33.04 E-value=29 Score=13.79 Aligned_cols=42 Identities=17% Similarity=0.294 Sum_probs=23.7
Q ss_pred EECCEEEEEEECCCCCCCCCEEEEEECCCEEEEC--CCCEECCC
Q ss_conf 7634899998556777765356798768179983--34024677
Q gi|254780869|r 130 DVGAFSIESVRVNHSIPETMALVIRSPVGNIVHT--GDWKLDDD 171 (559)
Q Consensus 130 ~~g~~~v~~~~~~Hsip~a~~~~I~t~~g~i~yt--GDfk~d~~ 171 (559)
.-|.+.-|--+.+=-|-|.-.|.+.+|+|...|| |+|++|..
T Consensus 67 ~qG~l~~Tg~~lDlAI~G~GfF~V~~~~G~~~yTR~G~F~~d~~ 110 (246)
T PRK12640 67 TPGPIQTTGRPLDVALQGDGWLAVQAPDGSEAYTRNGSLQVDAN 110 (246)
T ss_pred CCCCEEECCCCCEEEECCCCEEEEECCCCCEEEEECCCEEECCC
T ss_conf 78873556983308876995799987998542577562899999
No 244
>PRK05764 aspartate aminotransferase; Provisional
Probab=32.87 E-value=29 Score=13.77 Aligned_cols=20 Identities=15% Similarity=0.189 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHCCEEEE
Q ss_conf 89999999999871886998
Q gi|254780869|r 237 VSRIRSIIDIAEQIGRKIVL 256 (559)
Q Consensus 237 i~Ri~~i~~~a~~~~R~v~i 256 (559)
-+++++++++|++++--|+.
T Consensus 183 ~~~l~~l~~~a~~~~i~ii~ 202 (389)
T PRK05764 183 KEELEAIADVAVEHDIWVLS 202 (389)
T ss_pred HHHHHHHHHHHHHCCCEEEE
T ss_conf 79999999998863532751
No 245
>TIGR03471 HpnJ hopanoid biosynthesis associated radical SAM protein HpnJ. One of the well-described hopanoid intermediates is bacteriohopanetetrol. In the conversion from hopene several reactions must occur in the side chain for which a radical mechanism might be reasonable. These include the four (presumably anaerobic) hydroxylations and a methyl shift.
Probab=32.70 E-value=29 Score=13.75 Aligned_cols=240 Identities=17% Similarity=0.178 Sum_probs=111.8
Q ss_pred CEEEEEECCCEEEECCCC----EECCCCCCCC----CCCHHHHH--H--------CCCCCC--EEEEECC--CCCCCCCC
Q ss_conf 356798768179983340----2467766542----38988998--6--------087882--9999635--64578887
Q gi|254780869|r 149 MALVIRSPVGNIVHTGDW----KLDDDAILGD----VTDKDSLC--A--------IGNEGI--LALMCDS--TNAMREGT 206 (559)
Q Consensus 149 ~~~~I~t~~g~i~ytGDf----k~d~~p~~g~----~~d~~~l~--~--------~~~~gv--~~Li~es--T~~~~~~~ 206 (559)
-|+.....+|+|++|++- -+|.-|.... ..+..+.. . ...+|+ .|-.|-. |...+.-+
T Consensus 146 ~Gi~yr~~dG~Iv~~p~r~~i~dLD~LPf~~p~y~~dL~~~~Y~~~~~~~p~~~i~TSRGCP~~C~FC~~p~~~~Gr~~R 225 (472)
T TIGR03471 146 DGLSYRGKDGKIVHNPDRPMIEDMDALPFVAPVYKRDLDIERYFIGYLKHPYISLYTGRGCPSKCTFCLWPQTVGGHRYR 225 (472)
T ss_pred CEEEEECCCCCEEECCCCCCCCHHHHCCCCCHHHHHHCCHHHCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 82599879996887999866100420888762343028986633542458614764179988779687882102688662
Q ss_pred CCCHHHHHHHHHHHHHHCCC-C-EEE--EECHHHHHHHHHHHHHHHHHCCEEEEECHH-H-HHHHHHHHHCCCCCC----
Q ss_conf 77787999999999862798-3-999--941477899999999998718869984486-9-999998874287677----
Q gi|254780869|r 207 CISEKGIKKNIYDIMKNAKG-C-VLV--TTFSSSVSRIRSIIDIAEQIGRKIVLLGSS-L-KRVVSVAIDVGIIKK---- 276 (559)
Q Consensus 207 ~~sE~~v~~~i~~~~~~~~g-r-Viv--~~fasni~Ri~~i~~~a~~~~R~v~i~Grs-~-~~~~~~a~~~g~l~~---- 276 (559)
..|-..|-+.++.+.++..| + +.+ -+|..|-.|+.++.+.-++.+-+-....|. + ...+...++.|...-
T Consensus 226 ~RSpe~VvdEIe~l~~~y~gv~~~~f~DD~Ft~~~~r~~eic~~i~~l~i~W~~~~Rv~~d~E~l~~mk~AGc~~v~~Gi 305 (472)
T TIGR03471 226 TRSAESVIEEVKYALENFPEVREFFFDDDTFTDDKPRAEEIARKLGPLGVTWSCNARANVDYETLKVMKENGLRLLLVGY 305 (472)
T ss_pred CCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHCCCEEEEEEECCCCHHHHHHHHHHCCEEEEEEC
T ss_conf 15999999999999986689758999477667899999999999987698278763034899999999983984899803
Q ss_pred ---CCCC-------CCHHH----HCCCCCCCE---EEEEECCCCCHHHHHHHHCCCCCCCCCCCCCCEEEEE-EECCCCH
Q ss_conf ---6542-------26566----223880208---9999669632688988520277765302689669999-6158861
Q gi|254780869|r 277 ---DQLF-------LSDES----FGLYPREQL---IVIATGSQGEPRSALAQLSRGEMRNVKLAEKDTVIFS-SRAIPGN 338 (559)
Q Consensus 277 ---~~~~-------i~~~~----~~~~p~~~~---~ii~TGsqge~~a~l~ria~~~~~~i~l~~~D~vI~s-s~~ipGn 338 (559)
.+.. ++.++ ++...+-.+ .-...|-.||....+.+-.+- -.++.+ |++-|| ..|-||.
T Consensus 306 ESgsq~iL~~i~K~~t~e~~~~av~~~k~~GI~v~~~FIiG~PgET~Eti~~Ti~f---a~~l~~-d~~~~si~tPyPGT 381 (472)
T TIGR03471 306 ESGDQQILKNIKKGLTVEIARRFTRDCHKLGIKVHGTFILGLPGETRETIRKTIDF---AKELNP-HTIQVSLAAPYPGT 381 (472)
T ss_pred CCCCHHHHHHHCCCCCHHHHHHHHHHHHHCCCEEEEEEEECCCCCCHHHHHHHHHH---HHHCCC-CEEEEEEECCCCCC
T ss_conf 75899999985389989999999998875798799999877999988999999999---997598-90899872588996
Q ss_pred HHHHHHHH--HHHHCCCEEEEECCC--CCCEECCCCCCHHHHHHHHHH------CCCCEEEEECCC
Q ss_conf 77899999--765103113430356--664131578897899999975------495399970457
Q gi|254780869|r 339 EVAIGHIK--NRLVEQGVRVIAEDA--ECPVHVSGHPYPNDLKRMYQW------IRPQVLVAIHGE 394 (559)
Q Consensus 339 E~~~~~~~--n~l~~~g~~vi~~~~--~~~iH~SGHa~~edl~~li~~------ikPk~~IPvHGe 394 (559)
+.- ..+. +++.....+.+.... ...++ .-|-+++||.++++. ++|+|++..-++
T Consensus 382 ~ly-~~~~e~g~i~~~~~~~~d~~~~~~~~~~-~~~ls~~ei~~~~~~~y~~fy~rP~~i~~~~~~ 445 (472)
T TIGR03471 382 ELY-DQAKQNGWITQDSAAMVDDTGHQMAAIS-YPHLSREEIFDGVERFYKRFYFRPKKIGRIVRE 445 (472)
T ss_pred HHH-HHHHHCCCCCCCCCEECCCCCCEECCCC-CCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHH
T ss_conf 999-9999839855664123157773314458-999899999999999999981889999999999
No 246
>PRK10852 thiosulfate transporter subunit; Provisional
Probab=32.60 E-value=26 Score=14.13 Aligned_cols=46 Identities=30% Similarity=0.295 Sum_probs=30.5
Q ss_pred EEEEEEECCCCHHHHHHHHHHHHHCCCEEEEECCCCCCEECCCCCCHHHHHHH
Q ss_conf 69999615886177899999765103113430356664131578897899999
Q gi|254780869|r 327 TVIFSSRAIPGNEVAIGHIKNRLVEQGVRVIAEDAECPVHVSGHPYPNDLKRM 379 (559)
Q Consensus 327 ~vI~ss~~ipGnE~~~~~~~n~l~~~g~~vi~~~~~~~iH~SGHa~~edl~~l 379 (559)
|++|--+. ||-+.+. -.+.|.+.|++||+.++. +||-|--.=|-..
T Consensus 121 tivFlVRk--GNPK~Ik-dW~DL~k~gV~VItPNPK----TSGgaRwnyLAAw 166 (338)
T PRK10852 121 TMGFLVRK--GNPKNIH-DWNDLVRSDVKLIFPNPK----TSGNARYTYLAAW 166 (338)
T ss_pred EEEEEEEC--CCCCCCC-CHHHHCCCCCEEECCCCC----CCCCHHHHHHHHH
T ss_conf 79999807--9956687-757746489789757998----8840769999999
No 247
>PRK05857 acyl-CoA synthetase; Validated
Probab=32.38 E-value=29 Score=13.72 Aligned_cols=52 Identities=17% Similarity=0.187 Sum_probs=29.9
Q ss_pred ECCCEEEEECCC-CEEEEEEEECCCEEECCCCEECCCCHHHHHHHHHHHCCEEEEEEE
Q ss_conf 003227897389-704501232132021233100255058899997403874999999
Q gi|254780869|r 416 VRNGKMLRLFPD-PIEIIDEVVHGLFLKDGFLIGKFADLGIAKRRQLSFVGHLSVNVL 472 (559)
Q Consensus 416 ~~NGd~i~l~~~-~~~i~~~v~~g~~~vDG~~i~~~~~~vl~eR~~Ls~~GiV~V~vi 472 (559)
..-||+..+.++ ...+.++.+ .-+-+.|..+ ...+ + |...++..|+.-+.++
T Consensus 396 ~~TGDlg~~d~dG~l~~~GR~~-d~Ik~~G~~I-~p~E--I-E~~l~~~p~V~~aavv 448 (532)
T PRK05857 396 VNTGDLLERREDGFFYIKGRSS-EMIISGGVNI-APDE--V-DRIAEGVSGVREAACY 448 (532)
T ss_pred CCCCCEEEECCCCCEEEEECCC-CEEEECCEEE-CHHH--H-HHHHHHCCCCCEEEEE
T ss_conf 8668679998997499986167-9899999999-9999--9-9999739982289999
No 248
>cd02012 TPP_TK Thiamine pyrophosphate (TPP) family, Transketolase (TK) subfamily, TPP-binding module; TK catalyzes the transfer of a two-carbon unit from ketose phosphates to aldose phosphates. In heterotrophic organisms, TK provides a link between glycolysis and the pentose phosphate pathway and provides precursors for nucleotide, aromatic amino acid and vitamin biosynthesis. In addition, the enzyme plays a central role in the Calvin cycle in plants. Typically, TKs are homodimers. They require TPP and divalent cations, such as magnesium ions, for activity.
Probab=32.32 E-value=29 Score=13.71 Aligned_cols=118 Identities=12% Similarity=0.156 Sum_probs=53.0
Q ss_pred EEEEEEECCCCCCCCCEEEEE-----ECCCEEEECCCCEECCCCCCCCCCCHHHHHHCCCCC--CEEEEECCCCCCCCCC
Q ss_conf 899998556777765356798-----768179983340246776654238988998608788--2999963564578887
Q gi|254780869|r 134 FSIESVRVNHSIPETMALVIR-----SPVGNIVHTGDWKLDDDAILGDVTDKDSLCAIGNEG--ILALMCDSTNAMREGT 206 (559)
Q Consensus 134 ~~v~~~~~~Hsip~a~~~~I~-----t~~g~i~ytGDfk~d~~p~~g~~~d~~~l~~~~~~g--v~~Li~esT~~~~~~~ 206 (559)
+.++-=+.+|+++=|+|+++- .+...++..||=-+ .+....+.+.-.+..+ -+.++.|--+....+.
T Consensus 100 i~~stGsLG~gls~a~G~A~a~k~~~~~~~v~~~iGDGel------~EG~~wEAl~~A~~~~L~nLi~ivD~N~~~~~g~ 173 (255)
T cd02012 100 VEVTTGSLGQGLSVAVGMALAEKLLGFDYRVYVLLGDGEL------QEGSVWEAASFAGHYKLDNLIAIVDSNRIQIDGP 173 (255)
T ss_pred EEECCCCHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCC------CCCHHHHHHHHHHHCCCCCEEEEECCCCCEECCC
T ss_conf 6517875377899999999999862888717999425110------3312899999985558775699986898262560
Q ss_pred CCCHHHHHHHHHHHHHHCCCCEEEEECHHHHHHHHHHHHHHHHH-CCEEEEECH
Q ss_conf 77787999999999862798399994147789999999999871-886998448
Q gi|254780869|r 207 CISEKGIKKNIYDIMKNAKGCVLVTTFSSSVSRIRSIIDIAEQI-GRKIVLLGS 259 (559)
Q Consensus 207 ~~sE~~v~~~i~~~~~~~~grViv~~fasni~Ri~~i~~~a~~~-~R~v~i~Gr 259 (559)
+... .-.+.+.+.|+. -|-=++.+=..|+..+...++-|++. +|+.++..+
T Consensus 174 ~~~~-~~~~~l~~~~~s-fG~~v~~vdGhd~~~i~~a~~~a~~~~~kP~~I~~~ 225 (255)
T cd02012 174 TDDI-LFTEDLAKKFEA-FGWNVIEVDGHDVEEILAALEEAKKSKGKPTLIIAK 225 (255)
T ss_pred CCCC-CCHHHHHHHHHH-CCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEEE
T ss_conf 3025-476889999996-698111017999999999999998679995899999
No 249
>PRK01424 S-adenosylmethionine:tRNA ribosyltransferase-isomerase; Provisional
Probab=32.17 E-value=30 Score=13.69 Aligned_cols=32 Identities=34% Similarity=0.585 Sum_probs=13.8
Q ss_pred HHHHHHHHHCCEEEEECHHHHHHHHHHHHCCC
Q ss_conf 99999987188699844869999998874287
Q gi|254780869|r 242 SIIDIAEQIGRKIVLLGSSLKRVVSVAIDVGI 273 (559)
Q Consensus 242 ~i~~~a~~~~R~v~i~Grs~~~~~~~a~~~g~ 273 (559)
+.++.|++.||+|+-+|-+-.|.++.+...|.
T Consensus 260 ~~In~ak~~g~RViAVGTT~vRaLEs~~~~g~ 291 (366)
T PRK01424 260 EIINKAKQEGRRIIAVGTTTLRTLESSCNNGI 291 (366)
T ss_pred HHHHHHHHCCCCEEEEECCHHHHHHHHHHCCC
T ss_conf 99999987189289994516887887751698
No 250
>cd05014 SIS_Kpsf KpsF-like protein. KpsF is an arabinose-5-phosphate isomerase which contains SIS (Sugar ISomerase) domains. SIS domains are found in many phosphosugar isomerases and phosphosugar binding proteins. KpsF catalyzes the reversible reaction of ribulose 5-phosphate to arabinose 5-phosphate. This is the second step in the CMP-Kdo biosynthesis pathway.
Probab=32.06 E-value=30 Score=13.68 Aligned_cols=36 Identities=25% Similarity=0.326 Sum_probs=18.1
Q ss_pred CCCCCCEEEEEEECCCCHHHHHHHHHHHHHCCCEEEEE
Q ss_conf 02689669999615886177899999765103113430
Q gi|254780869|r 321 KLAEKDTVIFSSRAIPGNEVAIGHIKNRLVEQGVRVIA 358 (559)
Q Consensus 321 ~l~~~D~vI~ss~~ipGnE~~~~~~~n~l~~~g~~vi~ 358 (559)
.++++|.+|+-|.- |+-+....+.+...+.|++++.
T Consensus 44 ~i~~~Dv~i~iS~S--G~T~e~~~~~~~ak~~g~~vI~ 79 (128)
T cd05014 44 MVTPGDVVIAISNS--GETDELLNLLPHLKRRGAPIIA 79 (128)
T ss_pred CCCCCCEEEEEECC--CCCHHHHHHHHHHHHCCCCEEE
T ss_conf 77899999999799--9986799999999863785899
No 251
>PRK08443 consensus
Probab=31.95 E-value=30 Score=13.67 Aligned_cols=19 Identities=5% Similarity=0.134 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHCCEEE
Q ss_conf 8999999999987188699
Q gi|254780869|r 237 VSRIRSIIDIAEQIGRKIV 255 (559)
Q Consensus 237 i~Ri~~i~~~a~~~~R~v~ 255 (559)
-+++++++++|++++=-|+
T Consensus 181 ~~~l~~l~~~a~~~~~~ii 199 (388)
T PRK08443 181 KEELEAIAKVLKGTDIWVL 199 (388)
T ss_pred HHHHHHHHHHHHCCCCEEE
T ss_conf 4789999998623575674
No 252
>PRK08610 fructose-bisphosphate aldolase; Reviewed
Probab=31.91 E-value=30 Score=13.67 Aligned_cols=156 Identities=15% Similarity=0.200 Sum_probs=73.2
Q ss_pred HHHHHHHC-CCCEEEEEC-HHHHHHHHHHHHHHHHHCCEEEEECH-HHHHHHHHHHHCCCCCCCCCC---CC--HHHH-C
Q ss_conf 99998627-983999941-47789999999999871886998448-699999988742876776542---26--5662-2
Q gi|254780869|r 217 IYDIMKNA-KGCVLVTTF-SSSVSRIRSIIDIAEQIGRKIVLLGS-SLKRVVSVAIDVGIIKKDQLF---LS--DESF-G 287 (559)
Q Consensus 217 i~~~~~~~-~grViv~~f-asni~Ri~~i~~~a~~~~R~v~i~Gr-s~~~~~~~a~~~g~l~~~~~~---i~--~~~~-~ 287 (559)
+.+++..+ ++.--|++| ..|++-++.++++|++.+.+|.+.-- ...+ |+.....+ +. ..+. .
T Consensus 6 lk~lL~~A~~~~yAV~afNv~n~e~~~avi~AAee~~sPvIlq~s~~~~~---------~~~g~~~~~~~~~~~~~~~~a 76 (286)
T PRK08610 6 MKEMLIDAKENGYAVGQYNINNLEFTQAILEASQEENAPVILGVSEGAAR---------YMSGFYTIVKMVEGLMHDLNI 76 (286)
T ss_pred HHHHHHHHHHCCEEEEEEEECCHHHHHHHHHHHHHHCCCEEEEECCCHHH---------HCCCHHHHHHHHHHHHHHHCC
T ss_conf 89999999988917998766989999999999999687999991766887---------657688999999999998379
Q ss_pred CCCCCCEEEEEECCCCCHHHHHHHHCCCCCCCCCCCCC-CEEEEEEECCCCHHHHHHHH---HHHHHCCCEEEEE-----
Q ss_conf 38802089999669632688988520277765302689-66999961588617789999---9765103113430-----
Q gi|254780869|r 288 LYPREQLIVIATGSQGEPRSALAQLSRGEMRNVKLAEK-DTVIFSSRAIPGNEVAIGHI---KNRLVEQGVRVIA----- 358 (559)
Q Consensus 288 ~~p~~~~~ii~TGsqge~~a~l~ria~~~~~~i~l~~~-D~vI~ss~~ipGnE~~~~~~---~n~l~~~g~~vi~----- 358 (559)
..| +.+ .=..|..+....+. ++.| +.|.|-.+.-| .|..+..+ ...-...|+.|=-
T Consensus 77 ~VP----V~l-HLDH~~~~e~~~~a---------i~~GFtSVM~DgS~l~-~eeNi~~Tk~vv~~Ah~~gv~VEaElG~v 141 (286)
T PRK08610 77 TIP----VAI-HLDHGSSFEKCKEA---------IDAGFTSVMIDASHSP-FEENVATTKKVVEYAHEKGVSVEAELGTV 141 (286)
T ss_pred CCC----EEE-ECCCCCCHHHHHHH---------HHCCCCEEEECCCCCC-HHHHHHHHHHHHHHHHHHCCEEEEEEECC
T ss_conf 988----899-89899999999999---------9719998998199898-99999999999999987088269975213
Q ss_pred CCCCCCEECCC--CCCHHHHHHHHHHCCCCEEEE----ECCCHH
Q ss_conf 35666413157--889789999997549539997----045779
Q gi|254780869|r 359 EDAECPVHVSG--HPYPNDLKRMYQWIRPQVLVA----IHGEPL 396 (559)
Q Consensus 359 ~~~~~~iH~SG--Ha~~edl~~li~~ikPk~~IP----vHGe~r 396 (559)
.+....+...+ ..+.+|-+++++......+-+ +||.|.
T Consensus 142 gg~ed~~~~~~~~~T~peea~~Fv~~TgvD~LAvaiGt~HG~yk 185 (286)
T PRK08610 142 GGQEDDVVADGIIYADPKECQELVEKTGIDALAPALGSVHGPYK 185 (286)
T ss_pred CCCCCCCCCCCCCCCCHHHHHHHHHHHCCCEEEEECCCCCCCCC
T ss_conf 67567766754303799999999997398667311155446558
No 253
>TIGR01284 alt_nitrog_alph nitrogenase alpha chain; InterPro: IPR005974 The enzyme responsible for nitrogen fixation, the nitrogenase, shows a high degree of conservation of structure, function, and amino acid sequence across wide phylogenetic ranges. All known Mo-nitrogenases consist of two components, component I (also called dinitrogenase, or Fe-Mo protein), an alpha2beta2 tetramer encoded by the nifD and nifK genes, and component II (dinitrogenase reductase, or Fe protein) a homodimer encoded by the nifH gene. Two operons, nifDK and nifEN, encode a tetrameric (alpha2beta2 and N2E2) enzymatic complex. Nitrogenase contains two unusual rare metal clusters; one of them is the iron molybdenum cofactor (FeMo-co), which is considered to be the site of dinitrogen reduction and whose biosynthesis requires the products of nifNE and of some other nif genes. It has been proposed that NifNE might serve as a scaffold upon which FeMo-co is built and then inserted into component I. This model represents the alpha chains of various forms of the nitrogen-fixing enzyme nitrogenase: vanadium-iron, iron-iron, and molybdenum-iron. Most examples of NifD, the molybdenum-iron type nitrogenase alpha chain, are excluded from this model and described instead by equivalog model IPR005972 from INTERPRO.; GO: 0016163 nitrogenase activity, 0051536 iron-sulfur cluster binding, 0009399 nitrogen fixation.
Probab=31.77 E-value=30 Score=13.65 Aligned_cols=71 Identities=24% Similarity=0.429 Sum_probs=42.2
Q ss_pred EEEEEEC--CCCHHHHHHHHHHHHHCCCEEEEECCCCCCEECCCCCCHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHH
Q ss_conf 9999615--88617789999976510311343035666413157889789999997549539997045779999999878
Q gi|254780869|r 328 VIFSSRA--IPGNEVAIGHIKNRLVEQGVRVIAEDAECPVHVSGHPYPNDLKRMYQWIRPQVLVAIHGEPLHLVAHKELA 405 (559)
Q Consensus 328 vI~ss~~--ipGnE~~~~~~~n~l~~~g~~vi~~~~~~~iH~SGHa~~edl~~li~~ikPk~~IPvHGe~rhl~~h~~la 405 (559)
|=+|++- --++||-.+|.. .|.=+| +| ++.=|+.+.++.+||..++- | ..-++||
T Consensus 364 Vavs~kFgHe~d~EK~~aR~~-----EGT~~i-DD----------pNeLE~~Eiie~~kPDiIlt--G-----~r~gela 420 (468)
T TIGR01284 364 VAVSTKFGHEDDYEKVIARVK-----EGTLII-DD----------PNELELLEIIELLKPDIILT--G-----KREGELA 420 (468)
T ss_pred EEEEEEECCCCCEEEEEEECC-----CCEEEE-EC----------CCCCHHHHHHHHHCCCEEEE--C-----CCCCEEE
T ss_conf 999875165277053557415-----410788-57----------97503888986418888971--7-----8665047
Q ss_pred HHCCCC--CEEEECCCEE
Q ss_conf 744786--3155003227
Q gi|254780869|r 406 LQEGIA--CVPPVRNGKM 421 (559)
Q Consensus 406 ~~~gv~--~i~l~~NGd~ 421 (559)
+..+|| +..-=+||==
T Consensus 421 kKl~vPy~~~H~Y~NGPY 438 (468)
T TIGR01284 421 KKLRVPYINIHSYHNGPY 438 (468)
T ss_pred EEECCCEEEECCCCCCCC
T ss_conf 653067674015347784
No 254
>TIGR02082 metH methionine synthase; InterPro: IPR011822 Vitamin B12 dependent methionine synthase 2.1.1.13 from EC (5-methyltetrahydrofolate--homocysteine S-methyltransferase) catalyses the conversion of 5-methyltetrahydrofolate and L-homocysteine to tetrahydrofolate and L-methionine as the final step in de novo methionine biosynthesis. The enzyme requires methylcobalamin as a cofactor. In humans, defects in this enzyme are the cause of autosomal recessive inherited methylcobalamin deficiency (CBLG), which causes mental retardation, macrocytic anemia and homocystinuria. Mild deficiencies in activity may result in mild hyperhomocysteinemia, and mutations in the enzyme may be involved in tumorigenesis. Vitamin B12 dependent methionine synthase is found in prokaryotes and eukaryotes, but in prokaryotes the cofactor is cobalamin. This enzyme is a large protein composed of four structurally and functionally distinct modules: the first two modules bind homocysteine and tetrahydrofolate , the third module binds the B12 cofactor , and the C-terminal module (activation domain) binds S-adenosylmethionine. The activation domain is essential for the reductive activation of the enzyme. During the catalytic cycle, the highly reactive cob(I)alamin intermediate can be oxidised to produce an inactive cob(II)alamin enzyme; the enzyme is then reactivated via reductive methylation by the activation domain . The activation domain adopts an unusual alpha/beta fold.Recent studies suggest that this enzyme exists as an ensemble of conformations with equilibria dependent on the oxidation and methylation state of the cobalamin and on the concentrations of substrates or products .; GO: 0008705 methionine synthase activity, 0031419 cobalamin binding, 0050897 cobalt ion binding, 0009086 methionine biosynthetic process.
Probab=31.73 E-value=30 Score=13.64 Aligned_cols=336 Identities=16% Similarity=0.179 Sum_probs=156.1
Q ss_pred CCEECCCCCCCCCCCHHHHHH-CCCC-CC--EEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECH--HH--
Q ss_conf 402467766542389889986-0878-82--9999635645788877778799999999986279839999414--77--
Q gi|254780869|r 165 DWKLDDDAILGDVTDKDSLCA-IGNE-GI--LALMCDSTNAMREGTCISEKGIKKNIYDIMKNAKGCVLVTTFS--SS-- 236 (559)
Q Consensus 165 Dfk~d~~p~~g~~~d~~~l~~-~~~~-gv--~~Li~esT~~~~~~~~~sE~~v~~~i~~~~~~~~grViv~~fa--sn-- 236 (559)
|.-+|.-..+|. .+..+|.. ++.+ -| +=|+.|||+ -.| |+.=++...|++||.+=+ -=
T Consensus 393 DiN~D~~~lDg~-~~M~~f~~llA~ePdia~vPlMlDSs~----------~~v---leaGLk~~qGKcivNSislkdGDG 458 (1265)
T TIGR02082 393 DINVDDGMLDGV-AAMKRFLNLLASEPDIAKVPLMLDSSE----------WEV---LEAGLKCIQGKCIVNSISLKDGDG 458 (1265)
T ss_pred EEEECCCCCCCH-HHHHHHHHHHCCCCCCCCCCCCCCCCH----------HHH---HHHHHHHCCCEEEEEEECCCCCCC
T ss_conf 987065536737-899999996268986021360005743----------799---976243038846873202566888
Q ss_pred -HHHHHHHHHHHHHHCCEEEEE-------CHHHHHHHHHHHHC--------CCCCCCCCCCCHHHHCCCCCCCEEEEEEC
Q ss_conf -899999999998718869984-------48699999988742--------87677654226566223880208999966
Q gi|254780869|r 237 -VSRIRSIIDIAEQIGRKIVLL-------GSSLKRVVSVAIDV--------GIIKKDQLFLSDESFGLYPREQLIVIATG 300 (559)
Q Consensus 237 -i~Ri~~i~~~a~~~~R~v~i~-------Grs~~~~~~~a~~~--------g~l~~~~~~i~~~~~~~~p~~~~~ii~TG 300 (559)
-+|-.+-+++.+++|=-||++ +++..|-++++.+. | +++.+.++++ +++-|+||
T Consensus 459 PE~~F~~~a~l~k~yGAavVvmafDEeGQA~t~~~K~EI~~RAY~~lt~~~g-fpp~~IiFDP---------n~ltiaTG 528 (1265)
T TIGR02082 459 PEERFLEKAKLIKEYGAAVVVMAFDEEGQARTADRKIEICKRAYELLTEKVG-FPPEDIIFDP---------NILTIATG 528 (1265)
T ss_pred HHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHCC-CCHHHCCCCC---------CHHCCCCC
T ss_conf 4899999999998449848987015430010378899999999999997448-9802202121---------31101147
Q ss_pred CCCCHHHHHHHH-----CCCCCCCC------------------------------CCCCC-CEEEEEEECCCCHHH----
Q ss_conf 963268898852-----02777653------------------------------02689-669999615886177----
Q gi|254780869|r 301 SQGEPRSALAQL-----SRGEMRNV------------------------------KLAEK-DTVIFSSRAIPGNEV---- 340 (559)
Q Consensus 301 sqge~~a~l~ri-----a~~~~~~i------------------------------~l~~~-D~vI~ss~~ipGnE~---- 340 (559)
-=...+.+..-| -+.++++- .++.| |.=|-++..|+=++.
T Consensus 529 iEEh~~ya~~fI~A~r~IK~~LP~a~isgGvSNvSFsfrGn~a~R~a~hsVFLy~ai~aGmDmgIVnA~~i~~y~dI~~E 608 (1265)
T TIGR02082 529 IEEHRRYAIDFIEAIRWIKEELPDAKISGGVSNVSFSFRGNPAVREALHSVFLYHAIRAGMDMGIVNAGKILVYDDIDKE 608 (1265)
T ss_pred CCCCHHHHHHHHHHHHHHHHHCCCCEEECCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCHHCCCHHHCCCHH
T ss_conf 64212567899999999996589728853402221265787189999868999999951461005471016812238788
Q ss_pred HHHHHHHHHHCCC-----EEE-------------EECCCCCCEECCCCCCHHHHHHHHHHCCCCEEEEECCCHHHHHHHH
Q ss_conf 8999997651031-----134-------------3035666413157889789999997549539997045779999999
Q gi|254780869|r 341 AIGHIKNRLVEQG-----VRV-------------IAEDAECPVHVSGHPYPNDLKRMYQWIRPQVLVAIHGEPLHLVAHK 402 (559)
Q Consensus 341 ~~~~~~n~l~~~g-----~~v-------------i~~~~~~~iH~SGHa~~edl~~li~~ikPk~~IPvHGe~rhl~~h~ 402 (559)
.-..+.|-++.+. -+- ++....+..|.|+-++.+=-++|-+.+ |.|+-.|+.+-.
T Consensus 609 lr~~~eDli~~rrefeGe~~~~e~Ll~la~~y~g~~~~~~k~~~~~ewr~~pv~ERL~~~l-------V~G~~~~ieeD~ 681 (1265)
T TIGR02082 609 LREVVEDLILNRREFEGEREATEPLLELAQLYEGTTTKSDKEAQQAEWRNLPVEERLEYAL-------VKGEREGIEEDL 681 (1265)
T ss_pred HHHHHHHHHHCHHHCCCCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCHHHHHHHHH-------HHHHHHHHHHHH
T ss_conf 9999875431101237998775468999998436674102778756641788778886787-------533566689999
Q ss_pred HHHH----HCCCC----CEEEECCCEEE--EECCC-C---EEEEEEEECCCEE-------ECCCCEEC-CCCHHHHHHHH
Q ss_conf 8787----44786----31550032278--97389-7---0450123213202-------12331002-55058899997
Q gi|254780869|r 403 ELAL----QEGIA----CVPPVRNGKML--RLFPD-P---IEIIDEVVHGLFL-------KDGFLIGK-FADLGIAKRRQ 460 (559)
Q Consensus 403 ~la~----~~gv~----~i~l~~NGd~i--~l~~~-~---~~i~~~v~~g~~~-------vDG~~i~~-~~~~vl~eR~~ 460 (559)
+=|. +..-| +..|| ||+-+ +|++. + |.|+....+=+-. ++-...-+ +-+..+.| ..
T Consensus 682 eEA~lnq~~~~~PL~iIe~pLm-dGMk~VG~LFG~GkMfLPqVvkSArVMK~AVayL~P~me~~~~~~rvlnGtvee-~~ 759 (1265)
T TIGR02082 682 EEARLNQKKLTRPLEIIEGPLM-DGMKVVGDLFGSGKMFLPQVVKSARVMKKAVAYLEPYMEKEKSEDRVLNGTVEE-ED 759 (1265)
T ss_pred HHHHHHHHCCCCCHHHHHHHHH-CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCEECCEECC-CC
T ss_conf 9998864135671565412440-677100110388833161136768999999840676455300048502030013-45
Q ss_pred HHHCC-EEEEEEEEC-CC-C-CEEE------CCEEEEECCEECCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHH
Q ss_conf 40387-499999983-89-9-8800------5379994012125665889999999999999852200368989999999
Q gi|254780869|r 461 LSFVG-HLSVNVLLD-NH-Y-NIFG------VPEIVDIGIPAYDGDGGKIHKLLLKTVITTVVDLPQFRRKDLKLLRESI 530 (559)
Q Consensus 461 Ls~~G-iV~V~viid-~~-~-~l~~------~P~I~~~Gl~~~~~~~~~l~~~i~~~i~~~i~~~~~~~~~d~~~lk~~i 530 (559)
+..| +|+.||.=| .+ | +|++ .-+|.-.|+- .--+.+++..++.-.+.|. ++-.-.++.+.+++-+
T Consensus 760 -~~~G~~vlATVKGDVHDIGKNiV~vvLscNgY~VvdLGvm---~P~e~IL~~A~~~~AD~Ig-lSGLitpSl~eM~~va 834 (1265)
T TIGR02082 760 -SSKGKIVLATVKGDVHDIGKNIVGVVLSCNGYEVVDLGVM---VPVEKILEAAKDHNADVIG-LSGLITPSLDEMVEVA 834 (1265)
T ss_pred -CCCCEEEEEEECCCEECCCCCEEEEEEECCCEEEEECCCC---CCHHHHHHHHHHCCCCEEE-ECCCCHHHHHHHHHHH
T ss_conf -8887589998447551026523326870788489863525---8856899999843898998-4565501289999999
Q ss_pred HHHHHHHH
Q ss_conf 99999999
Q gi|254780869|r 531 SSALRSLL 538 (559)
Q Consensus 531 r~~irk~~ 538 (559)
+..-|+=+
T Consensus 835 ~EM~r~g~ 842 (1265)
T TIGR02082 835 EEMNRRGV 842 (1265)
T ss_pred HHHHHCCC
T ss_conf 99841576
No 255
>PTZ00094 serine hydroxymethyltransferase; Provisional
Probab=31.56 E-value=30 Score=13.63 Aligned_cols=49 Identities=18% Similarity=0.141 Sum_probs=26.2
Q ss_pred HHHHHCCEEEE--EEEECC-----CCCEEECCEEEEECCEECCCCHHHHHHHHHHHHH
Q ss_conf 97403874999--999838-----9988005379994012125665889999999999
Q gi|254780869|r 459 RQLSFVGHLSV--NVLLDN-----HYNIFGVPEIVDIGIPAYDGDGGKIHKLLLKTVI 509 (559)
Q Consensus 459 ~~Ls~~GiV~V--~viid~-----~~~l~~~P~I~~~Gl~~~~~~~~~l~~~i~~~i~ 509 (559)
+.|..-|+++= ++..|+ .|==++.|.+++||+- +.+...+.+.+.+.+.
T Consensus 349 ~~Le~~gI~~NkN~iP~D~~~~~~SGiRiGT~a~TtrGm~--e~em~~ia~lI~~~i~ 404 (450)
T PTZ00094 349 KLLDAVNISVNKNTIPGDKSALAPSGIRLGTPALTSRGAV--EEDFEFVADFLDRAVK 404 (450)
T ss_pred HHHHHCCEEECCCCCCCCCCCCCCCEEECCCHHHHHCCCC--HHHHHHHHHHHHHHHH
T ss_conf 9998749387478799999999987033167788838998--8999999999999999
No 256
>TIGR00628 ung uracil-DNA glycosylase; InterPro: IPR002043 Uracil-DNA glycosylase 3.2.2 from EC (UNG) is a DNA repair enzyme that excises uracil residues from DNA by cleaving the N-glycosylic bond. Uracil in DNA can arise as a result of mis-incorporation of dUMP residues by DNA polymerase or deamination of cytosine. The sequence of uracil-DNA glycosylase is extremely well conserved in bacteria and eukaryotes as well as in herpes viruses. More distantly related uracil-DNA glycosylases are also found in poxviruses . In eukaryotic cells, UNG activity is found in both the nucleus and the mitochondria. Human UNG1 protein is transported to both the mitochondria and the nucleus . The N-terminal 77 amino acids of UNG1 seem to be required for mitochondrial localisation , but the presence of a mitochondrial transit peptide has not been directly demonstrated. The most N-terminal conserved region contains an aspartic acid residue which has been proposed, based on X-ray structures , to act as a general base in the catalytic mechanism. ; GO: 0004844 uracil DNA N-glycosylase activity, 0006284 base-excision repair.
Probab=31.42 E-value=30 Score=13.61 Aligned_cols=80 Identities=20% Similarity=0.272 Sum_probs=39.8
Q ss_pred CCCCCCCEEEEEECCC--------EEE--ECCCCEE-CCCCCCCCCCCHHHHHHCCCCCCEEEEECCCCCCCCCCCCCH-
Q ss_conf 7777653567987681--------799--8334024-677665423898899860878829999635645788877778-
Q gi|254780869|r 143 HSIPETMALVIRSPVG--------NIV--HTGDWKL-DDDAILGDVTDKDSLCAIGNEGILALMCDSTNAMREGTCISE- 210 (559)
Q Consensus 143 Hsip~a~~~~I~t~~g--------~i~--ytGDfk~-d~~p~~g~~~d~~~l~~~~~~gv~~Li~esT~~~~~~~~~sE- 210 (559)
|+--.|.|+++-...| +|+ ..-|+-- -..|.+|. |..++++||++| .++=-=+.|...|.
T Consensus 67 H~pGqA~GLAFSV~~~~~~PPSL~NIf~EL~~~~p~~~~~p~hG~------L~~WA~QGVLLL--Nt~LTV~~g~p~SH~ 138 (225)
T TIGR00628 67 HGPGQAHGLAFSVKRGVPIPPSLKNIFKELEADYPDFFSPPKHGC------LESWARQGVLLL--NTVLTVRRGQPGSHS 138 (225)
T ss_pred CCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCHHHCCCCCCCC------CHHHHHHCHHHH--CCCCCCCCCCCCCHH
T ss_conf 546773444325586467782467899999721021126888898------555785141354--220112567862212
Q ss_pred ----HHHHHHHHHHH-HHCCC-CEEE
Q ss_conf ----79999999998-62798-3999
Q gi|254780869|r 211 ----KGIKKNIYDIM-KNAKG-CVLV 230 (559)
Q Consensus 211 ----~~v~~~i~~~~-~~~~g-rViv 230 (559)
..+.+.+.+.+ ++.++ .||+
T Consensus 139 ~~GWe~Ft~~vi~~Ls~~~~~llVFm 164 (225)
T TIGR00628 139 GLGWERFTDAVISRLSEKRDGLLVFM 164 (225)
T ss_pred HCCHHHHHHHHHHHHHHHCCCCEEEE
T ss_conf 21478999999999997279988998
No 257
>pfam02401 LYTB LytB protein. The mevalonate-independent 2-C-methyl-D-erythritol 4-phosphate (MEP) pathway for isoprenoid biosynthesis is essential in many eubacteria, plants, and the malaria parasite. The LytB gene is involved in the trunk line of the MEP pathway.
Probab=31.40 E-value=30 Score=13.61 Aligned_cols=25 Identities=16% Similarity=0.485 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHHCCEEEEECHH
Q ss_conf 7899999999998718869984486
Q gi|254780869|r 236 SVSRIRSIIDIAEQIGRKIVLLGSS 260 (559)
Q Consensus 236 ni~Ri~~i~~~a~~~~R~v~i~Grs 260 (559)
-+.+++..++-..+-|.+++++|..
T Consensus 96 ~V~kvh~~v~~~~~~Gy~iiiiG~~ 120 (280)
T pfam02401 96 LVTKVHNAVERMAKKGYHVILIGHK 120 (280)
T ss_pred CHHHHHHHHHHHHHCCCEEEEEECC
T ss_conf 1579999999998689879998379
No 258
>PRK08185 hypothetical protein; Provisional
Probab=31.16 E-value=31 Score=13.58 Aligned_cols=40 Identities=15% Similarity=0.248 Sum_probs=30.2
Q ss_pred HHHHHHC-CCCEEEEEC-HHHHHHHHHHHHHHHHHCCEEEEE
Q ss_conf 9998627-983999941-477899999999998718869984
Q gi|254780869|r 218 YDIMKNA-KGCVLVTTF-SSSVSRIRSIIDIAEQIGRKIVLL 257 (559)
Q Consensus 218 ~~~~~~~-~grViv~~f-asni~Ri~~i~~~a~~~~R~v~i~ 257 (559)
.+++..+ ++.--|++| ..|.+-++.++++|++.+.+|.+.
T Consensus 2 k~lL~~A~~~~yAV~AfNv~~~e~~~avi~AAee~~sPvIiq 43 (283)
T PRK08185 2 KELLAVAKEHQFAVGAFNVADSCFLRAVVEEAEANNAPAIIA 43 (283)
T ss_pred HHHHHHHHHCCCEEEEEEECCHHHHHHHHHHHHHHCCCEEEE
T ss_conf 789999998796799988899999999999999978798999
No 259
>cd00740 MeTr MeTr subgroup of pterin binding enzymes. This family includes cobalamin-dependent methyltransferases such as methyltetrahydrofolate, corrinoid iron-sulfur protein methyltransferase (MeTr) and methionine synthase (MetH). Cobalamin-dependent methyltransferases catalyze the transfer of a methyl group via a methyl- cob(III)amide intermediate. These include MeTr, a functional heterodimer, and the folate binding domain of MetH.
Probab=31.07 E-value=31 Score=13.57 Aligned_cols=43 Identities=21% Similarity=0.315 Sum_probs=33.5
Q ss_pred HHHHHHHHHCCCCEEEEECHHH--HHHHHHHHHHHHHHCCEEEEE
Q ss_conf 9999998627983999941477--899999999998718869984
Q gi|254780869|r 215 KNIYDIMKNAKGCVLVTTFSSS--VSRIRSIIDIAEQIGRKIVLL 257 (559)
Q Consensus 215 ~~i~~~~~~~~grViv~~fasn--i~Ri~~i~~~a~~~~R~v~i~ 257 (559)
+.++.-++..+||.++.+.+=. -+|+..++.+|+++|=.|+..
T Consensus 81 ~~iEaaLk~~~Gr~iINSis~e~g~er~~~i~pLakkyga~vI~L 125 (252)
T cd00740 81 EVIEAGLKCCQGKCVVNSINLEDGEERFLKVARLAKEHGAAVVVL 125 (252)
T ss_pred HHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHHHCCCEEEEE
T ss_conf 999999997699867741634454889999999998709989999
No 260
>COG1803 MgsA Methylglyoxal synthase [Carbohydrate transport and metabolism]
Probab=30.93 E-value=31 Score=13.55 Aligned_cols=14 Identities=14% Similarity=0.297 Sum_probs=5.1
Q ss_pred CCCCEECCHHHHHH
Q ss_conf 29977929999999
Q gi|254780869|r 91 LHVPVYASPFAIGL 104 (559)
Q Consensus 91 ~~~pIY~s~~t~~l 104 (559)
+++|+-+...|+++
T Consensus 105 ~nIP~A~N~aTAe~ 118 (142)
T COG1803 105 YNIPVATNRATAEF 118 (142)
T ss_pred HCCCCHHHHHHHHH
T ss_conf 15611311757999
No 261
>PRK00039 ruvC Holliday junction resolvase; Reviewed
Probab=30.65 E-value=31 Score=13.52 Aligned_cols=38 Identities=13% Similarity=0.120 Sum_probs=19.8
Q ss_pred HHHHHCCCEEEEECCC---CCCEECCCCCCHHHHHHHHHHC
Q ss_conf 9765103113430356---6641315788978999999754
Q gi|254780869|r 346 KNRLVEQGVRVIAEDA---ECPVHVSGHPYPNDLKRMYQWI 383 (559)
Q Consensus 346 ~n~l~~~g~~vi~~~~---~~~iH~SGHa~~edl~~li~~i 383 (559)
+-...+.|..+..+.+ +.-+-..|||++++...|++.+
T Consensus 90 llaa~~~~i~v~eysP~~VK~aitG~G~A~K~QV~~MV~~~ 130 (169)
T PRK00039 90 ILAAARRGLPVAEYTPLQVKKAVVGYGRADKEQVQHMVKRL 130 (169)
T ss_pred HHHHHHHCCCEEEECCCHHHHHHHCCCCCCHHHHHHHHHHH
T ss_conf 99999838975888707445533189977899999999998
No 262
>TIGR01753 flav_short flavodoxin; InterPro: IPR010087 Flavodoxins are small redox-active proteins with a flavin mononucleotide (FMN) prosthetic group. They function as electron transfer agents in a variety of microbial metabolic processes, including nitrogen fixation by nitrogenase , sulphite reduction , and light-dependent NADP+ reduction during photosynthesis . This entry describes the short chain type. Many of these are involved in sulphite reduction.; GO: 0010181 FMN binding, 0006118 electron transport.
Probab=30.42 E-value=31 Score=13.50 Aligned_cols=55 Identities=24% Similarity=0.317 Sum_probs=38.6
Q ss_pred CEEEEEEECCCCH----HHHHHHHHHHHHCCCEEEEECCCCCCEECCCCCC-HHHHHHHHHHCC
Q ss_conf 6699996158861----7789999976510311343035666413157889-789999997549
Q gi|254780869|r 326 DTVIFSSRAIPGN----EVAIGHIKNRLVEQGVRVIAEDAECPVHVSGHPY-PNDLKRMYQWIR 384 (559)
Q Consensus 326 D~vI~ss~~ipGn----E~~~~~~~n~l~~~g~~vi~~~~~~~iH~SGHa~-~edl~~li~~ik 384 (559)
-..+|.|--.- | =..+..+..++-..|++|+.. ..+-+-+-|+ .+|+.....+-|
T Consensus 84 ~va~FGSgd~~-ye~~FC~~v~~~~e~~~~~GA~i~~g---egl~~~~dP~t~e~~~~~~~fg~ 143 (146)
T TIGR01753 84 KVALFGSGDWG-YEDEFCEAVDDWEERLKEAGADIIAG---EGLKVDEDPETDEDLDKCEEFGK 143 (146)
T ss_pred EEEEEECCCCC-CCCCCHHHHHHHHHHHHHCCCEEECC---CCEEEECCCCCCHHHHHHHHHHH
T ss_conf 79997068898-88530016899999998489627438---96477459997067999999976
No 263
>pfam07541 EIF_2_alpha Eukaryotic translation initiation factor 2 alpha subunit. These proteins share a region of similarity that falls towards the C terminus from pfam00575.
Probab=30.13 E-value=32 Score=13.46 Aligned_cols=41 Identities=20% Similarity=0.399 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHHC--------CCCEEEEECHHH-HHHHHHHHHHHHHHC
Q ss_conf 79999999998627--------983999941477-899999999998718
Q gi|254780869|r 211 KGIKKNIYDIMKNA--------KGCVLVTTFSSS-VSRIRSIIDIAEQIG 251 (559)
Q Consensus 211 ~~v~~~i~~~~~~~--------~grViv~~fasn-i~Ri~~i~~~a~~~~ 251 (559)
.+..+.+.+++++. .|.+-++||++| |++|+.++.+|.+.+
T Consensus 39 ~~~~~~l~~~i~~~i~p~~vkIr~~iel~~~~~dGVe~IK~aL~~a~~~~ 88 (113)
T pfam07541 39 EEWKEALLEIIRERITPPPVKIRADIELTCFGPDGVEAIKKALKAAEEAS 88 (113)
T ss_pred HHHHHHHHHHHHHCCCCCCEEEEEEEEEEECCCCHHHHHHHHHHHHHHCC
T ss_conf 89999999999971889858999999999769655999999999999668
No 264
>PRK00726 murG N-acetylglucosaminyl transferase; Provisional
Probab=30.00 E-value=32 Score=13.45 Aligned_cols=43 Identities=16% Similarity=0.152 Sum_probs=30.6
Q ss_pred CCCHHHHHHHHHHCCCCEEEEEC-CCHHHHHHHHHHHHHCCCCC
Q ss_conf 88978999999754953999704-57799999998787447863
Q gi|254780869|r 370 HPYPNDLKRMYQWIRPQVLVAIH-GEPLHLVAHKELALQEGIAC 412 (559)
Q Consensus 370 Ha~~edl~~li~~ikPk~~IPvH-Ge~rhl~~h~~la~~~gv~~ 412 (559)
+|..--+.++...=+|-.+||.- .-..|+...++...+.|..-
T Consensus 261 RaGa~Ti~E~~~~g~P~IlIP~p~a~~~HQ~~NA~~l~~~gaa~ 304 (359)
T PRK00726 261 RAGASTVAELAAAGLPAILVPLPHAADDHQTANARALVDAGAAK 304 (359)
T ss_pred CCCCCHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHCCCEE
T ss_conf 89832699999828986998368777538999999999789999
No 265
>COG0810 TonB Periplasmic protein TonB, links inner and outer membranes [Cell envelope biogenesis, outer membrane]
Probab=29.98 E-value=32 Score=13.44 Aligned_cols=35 Identities=23% Similarity=0.276 Sum_probs=24.0
Q ss_pred HHHHHHHHHCCEEEEEEEECCCCCEEECCEEEEEC
Q ss_conf 89999740387499999983899880053799940
Q gi|254780869|r 455 IAKRRQLSFVGHLSVNVLLDNHYNIFGVPEIVDIG 489 (559)
Q Consensus 455 l~eR~~Ls~~GiV~V~viid~~~~l~~~P~I~~~G 489 (559)
=+.=+++..+|-|.|.+.+|.+|++.+-=-+.+-|
T Consensus 170 P~~A~~~g~~G~V~V~f~i~~~G~v~~v~v~~SSg 204 (244)
T COG0810 170 PAQARARGIEGTVKVKFTIDPDGNVTNVRVLKSSG 204 (244)
T ss_pred CHHHHHCCCCCEEEEEEEECCCCCEEEEEEEECCC
T ss_conf 38999677840699999989999784578862389
No 266
>PRK10752 sulfate transporter subunit; Provisional
Probab=29.63 E-value=29 Score=13.73 Aligned_cols=46 Identities=35% Similarity=0.405 Sum_probs=31.0
Q ss_pred EEEEEEECCCCHHHHHHHHHHHHHCCCEEEEECCCCCCEECCCCCCHHHHHHH
Q ss_conf 69999615886177899999765103113430356664131578897899999
Q gi|254780869|r 327 TVIFSSRAIPGNEVAIGHIKNRLVEQGVRVIAEDAECPVHVSGHPYPNDLKRM 379 (559)
Q Consensus 327 ~vI~ss~~ipGnE~~~~~~~n~l~~~g~~vi~~~~~~~iH~SGHa~~edl~~l 379 (559)
+++|--+. ||-+.+. -.+.|.+.|++||+.++. +||-|--.=|-..
T Consensus 115 tivflVRk--GNPK~Ik-dW~DL~k~gV~VItPNPK----TSG~aRwn~LAaw 160 (329)
T PRK10752 115 TIVFLVRK--GNPKQIH-DWNDLIKPGVSVITPNPK----SSGGARWNYLAAW 160 (329)
T ss_pred EEEEEECC--CCCCCCC-CHHHHCCCCCEEECCCCC----CCCHHHHHHHHHH
T ss_conf 79999718--9956687-746746489789768998----8731779999999
No 267
>TIGR01125 TIGR01125 MiaB-like tRNA modifying enzyme YliG, TIGR01125; InterPro: IPR005840 This is a family of mainly hypothetical proteins of unknown function. .
Probab=29.54 E-value=11 Score=16.73 Aligned_cols=133 Identities=19% Similarity=0.287 Sum_probs=64.3
Q ss_pred CCCCHHHHHHHHHHHHHHC-CCCEEE----EECHHHHH-------HH---HHHHHHHHHHCC--------EEEEECHH-H
Q ss_conf 7777879999999998627-983999----94147789-------99---999999987188--------69984486-9
Q gi|254780869|r 206 TCISEKGIKKNIYDIMKNA-KGCVLV----TTFSSSVS-------RI---RSIIDIAEQIGR--------KIVLLGSS-L 261 (559)
Q Consensus 206 ~~~sE~~v~~~i~~~~~~~-~grViv----~~fasni~-------Ri---~~i~~~a~~~~R--------~v~i~Grs-~ 261 (559)
+|.+=.++....+.+++.. |-.++| +.|.=++. |= +++.+++.+.++ =.++|... .
T Consensus 191 rSR~ie~i~~Ea~~L~~~GvKEiiliaQDTt~YG~DL~~R~~~~~~e~v~~~L~~Ll~~L~k~~G~~WiR~~YlYP~~~~ 270 (475)
T TIGR01125 191 RSRPIEEILKEAKRLVDQGVKEIILIAQDTTAYGVDLYTRESEFDGEQVKSKLVELLEELGKLGGIYWIRLLYLYPDELT 270 (475)
T ss_pred CCCCHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCC
T ss_conf 77688889999999984398389999640347764111105522401457899999997400589622788876088886
Q ss_pred HHHHHHHHHC-C---CCCCCCCCCCHHHHCCCCCCCEEEEEECCCCCHHHHHHHHCCCCCCCCCCCCCCEEEEEEECCCC
Q ss_conf 9999988742-8---76776542265662238802089999669632688988520277765302689669999615886
Q gi|254780869|r 262 KRVVSVAIDV-G---IIKKDQLFLSDESFGLYPREQLIVIATGSQGEPRSALAQLSRGEMRNVKLAEKDTVIFSSRAIPG 337 (559)
Q Consensus 262 ~~~~~~a~~~-g---~l~~~~~~i~~~~~~~~p~~~~~ii~TGsqge~~a~l~ria~~~~~~i~l~~~D~vI~ss~~ipG 337 (559)
..++++..+. + ||+-|==-.+++-++.+.| |++.++....+.++ +..-+.+.|+. |||-.- ||
T Consensus 271 ~~vI~~m~~~~KvLPYlDiPLQH~sd~ILK~M~R-------~~~~~~~~~~i~~~-R~~~P~~vlRt--tfIVGF---PG 337 (475)
T TIGR01125 271 DDVIDLMAEGPKVLPYLDIPLQHASDRILKLMRR-------PGSGEEQLDLIERL-REKVPDAVLRT--TFIVGF---PG 337 (475)
T ss_pred HHHHHHHHCCCCCCCEECCCCCCCCHHHHHCCCC-------CCCHHHHHHHHHHH-HHHCCCCEEEE--EEEECC---CC
T ss_conf 6788998638980512254312387378742789-------96388999999999-97556617722--468868---89
Q ss_pred -HHHHHHHHHHHHHC
Q ss_conf -17789999976510
Q gi|254780869|r 338 -NEVAIGHIKNRLVE 351 (559)
Q Consensus 338 -nE~~~~~~~n~l~~ 351 (559)
.|.....+++.+.+
T Consensus 338 ETEEdF~eL~~Fv~e 352 (475)
T TIGR01125 338 ETEEDFQELLDFVEE 352 (475)
T ss_pred CCHHHHHHHHHHHHH
T ss_conf 987889999999852
No 268
>PRK06806 fructose-bisphosphate aldolase; Provisional
Probab=29.46 E-value=33 Score=13.38 Aligned_cols=42 Identities=19% Similarity=0.324 Sum_probs=32.3
Q ss_pred HHHHHHHHC-CCCEEEEEC-HHHHHHHHHHHHHHHHHCCEEEEE
Q ss_conf 999998627-983999941-477899999999998718869984
Q gi|254780869|r 216 NIYDIMKNA-KGCVLVTTF-SSSVSRIRSIIDIAEQIGRKIVLL 257 (559)
Q Consensus 216 ~i~~~~~~~-~grViv~~f-asni~Ri~~i~~~a~~~~R~v~i~ 257 (559)
++.+++..+ ++.--|++| ..|++-++.++++|++.+.+|.+.
T Consensus 5 ~~k~lL~~A~~~~yAV~afNv~n~e~~~avi~AAee~~sPvIiq 48 (281)
T PRK06806 5 QMKDLLMKANQENYGVGAFSVANMEMVMGAIKAAEELSSPLILQ 48 (281)
T ss_pred CHHHHHHHHHHCCCEEEEEEECCHHHHHHHHHHHHHHCCCEEEE
T ss_conf 68999999998792699977799999999999999969998999
No 269
>TIGR00090 TIGR00090 iojap homolog; InterPro: IPR004394 The gene iojap is a pattern-striping gene in maize, reflecting a chloroplast development defect in some cells. Maize has two RNA polymerases in plastids, but the plastid-encoded one, similar to bacterial RNA polymerases, is missing in iojap mutants. The role of iojap in chloroplast development, and the role of its bacterial orthologs modeled here, is unclear..
Probab=29.27 E-value=33 Score=13.36 Aligned_cols=20 Identities=25% Similarity=0.381 Sum_probs=11.3
Q ss_pred CCHHHHCCCCCCCEEEEEECCC
Q ss_conf 2656622388020899996696
Q gi|254780869|r 281 LSDESFGLYPREQLIVIATGSQ 302 (559)
Q Consensus 281 i~~~~~~~~p~~~~~ii~TGsq 302 (559)
++.+....+-++ +|||||.=
T Consensus 50 ld~~~~s~l~d~--~iICTG~S 69 (155)
T TIGR00090 50 LDVEGVSYLADY--FIICTGTS 69 (155)
T ss_pred EEECCCCEEECC--CEEEECCH
T ss_conf 720587421122--03330672
No 270
>COG3946 VirJ Type IV secretory pathway, VirJ component [Intracellular trafficking and secretion]
Probab=29.11 E-value=33 Score=13.34 Aligned_cols=35 Identities=14% Similarity=0.229 Sum_probs=14.7
Q ss_pred HCCCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf 6087882999963564578887777879999999998
Q gi|254780869|r 185 AIGNEGILALMCDSTNAMREGTCISEKGIKKNIYDIM 221 (559)
Q Consensus 185 ~~~~~gv~~Li~esT~~~~~~~~~sE~~v~~~i~~~~ 221 (559)
.+.+.||-+.=.||.+-+...++| ..+...+.+++
T Consensus 282 ~l~~~gvpVvGvdsLRYfW~~rtP--e~~a~Dl~r~i 316 (456)
T COG3946 282 ALQKQGVPVVGVDSLRYFWSERTP--EQIAADLSRLI 316 (456)
T ss_pred HHHHCCCCEEEEEHHHHHHCCCCH--HHHHHHHHHHH
T ss_conf 999779955643002355156897--88877799999
No 271
>PRK10727 DNA-binding transcriptional regulator GalR; Provisional
Probab=29.05 E-value=33 Score=13.34 Aligned_cols=32 Identities=6% Similarity=-0.156 Sum_probs=17.6
Q ss_pred ECCHHHHHHHHHHHHHCCCCCCCCEEEECCCC
Q ss_conf 92999999999999854886556225517555
Q gi|254780869|r 96 YASPFAIGLLEAKRVYERVSKKIPCISFQAGD 127 (559)
Q Consensus 96 Y~s~~t~~li~~~~~~~~~~~~~~~~~i~~~~ 127 (559)
..|+-|..-+.....+-++.++..-..+..+.
T Consensus 27 ~Vs~~Tr~rV~~aa~eLgY~Pn~~Ar~L~~~~ 58 (342)
T PRK10727 27 KASEASRLAVHSAMESLSYHPNANARALAQQS 58 (342)
T ss_pred CCCHHHHHHHHHHHHHHCCCCCHHHHHHCCCC
T ss_conf 99999999999999993998588888650177
No 272
>cd04795 SIS SIS domain. SIS (Sugar ISomerase) domains are found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars.
Probab=28.90 E-value=33 Score=13.32 Aligned_cols=36 Identities=31% Similarity=0.246 Sum_probs=19.2
Q ss_pred CCCCCCEEEEEEECCCCHHHHHHHHHHHHHCCCEEEEE
Q ss_conf 02689669999615886177899999765103113430
Q gi|254780869|r 321 KLAEKDTVIFSSRAIPGNEVAIGHIKNRLVEQGVRVIA 358 (559)
Q Consensus 321 ~l~~~D~vI~ss~~ipGnE~~~~~~~n~l~~~g~~vi~ 358 (559)
.++++|.+|+-|.- |+.+.+........+.|++++.
T Consensus 44 ~~~~~D~vi~iS~S--G~t~e~~~~~~~ak~~g~~vi~ 79 (87)
T cd04795 44 LLRKGDVVIALSYS--GRTEELLAALEIAKELGIPVIA 79 (87)
T ss_pred CCCCCCEEEEEECC--CCCHHHHHHHHHHHHCCCCEEE
T ss_conf 37899989999799--7988999999999987998999
No 273
>TIGR02634 xylF D-xylose ABC transporter, substrate-binding protein; InterPro: IPR013456 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain . The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyze ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarize the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site , , . The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis , , , , , . Proteins known to belong to this family are classified in several functional subfamilies depending on the substrate used (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This entry represents the D-xylose ABC transporter substrate-binding protein which is a periplasmic (when in Gram-negative bacteria) binding protein for D-xylose import by a high-affinity ATP-binding cassette (ABC) transporter..
Probab=28.68 E-value=34 Score=13.29 Aligned_cols=194 Identities=15% Similarity=0.186 Sum_probs=118.6
Q ss_pred CCHHHHHHHHHHHHHHC-CCCEEEEECHHHHHHHHHHHHHHHHHCCEEEEECHHHHHHHHHHHHCCCCCCCCCCC---CH
Q ss_conf 77879999999998627-983999941477899999999998718869984486999999887428767765422---65
Q gi|254780869|r 208 ISEKGIKKNIYDIMKNA-KGCVLVTTFSSSVSRIRSIIDIAEQIGRKIVLLGSSLKRVVSVAIDVGIIKKDQLFL---SD 283 (559)
Q Consensus 208 ~sE~~v~~~i~~~~~~~-~grViv~~fasni~Ri~~i~~~a~~~~R~v~i~Grs~~~~~~~a~~~g~l~~~~~~i---~~ 283 (559)
.+|..=-..+++++... +-.||+ .| |-.-+..++..|++.|-||+-|.| .+.-+-..-|+..++.-+ ..
T Consensus 38 ~~~~~Q~S~iE~li~~gv~vlvi~-~~--~~~vl~~~~~~A~~~GI~V~aYDR----LI~~aD~~fY~sFDN~~VG~~QA 110 (307)
T TIGR02634 38 GNEAKQLSQIENLIARGVDVLVII-PY--NGEVLSNAVQEAKKEGIKVLAYDR----LIEDADIDFYLSFDNEKVGEMQA 110 (307)
T ss_pred CCCHHHHHHHHHHHHCCCCEEEEE-CC--CCHHHHHHHHHHHHCCCEEEEEEC----CCCCCCCCEEEEECHHHHHHHHH
T ss_conf 740234788999986798099995-36--860378899999877980887301----11335520022304357888988
Q ss_pred HH-HCCCCCCCEEEEEECCCCCHHHHHHHHCCCCCCCCCCCCCCEEEEEEECCCCH--HHHHHHHHHHHHCCC--EEEEE
Q ss_conf 66-22388020899996696326889885202777653026896699996158861--778999997651031--13430
Q gi|254780869|r 284 ES-FGLYPREQLIVIATGSQGEPRSALAQLSRGEMRNVKLAEKDTVIFSSRAIPGN--EVAIGHIKNRLVEQG--VRVIA 358 (559)
Q Consensus 284 ~~-~~~~p~~~~~ii~TGsqge~~a~l~ria~~~~~~i~l~~~D~vI~ss~~ipGn--E~~~~~~~n~l~~~g--~~vi~ 358 (559)
+. +.-.|..+.++ ..||+-.+.|.|.|-..-+=-.-.+.+||.-|....-+-+. +.+...|-|.|.... ++.+-
T Consensus 111 ~a~l~~~P~GnY~l-~~GsP~D~NA~~lR~GQ~~VL~~~id~G~ikivG~~wvd~Wlp~~A~~~~E~~LTan~N~~D~vV 189 (307)
T TIGR02634 111 KAVLAAAPKGNYFL-LGGSPTDNNAKLLREGQMKVLQPAIDSGDIKIVGDQWVDGWLPENALKIMENALTANDNKVDAVV 189 (307)
T ss_pred HHHHHCCCCCCEEE-EECCCCCHHHHHHHHHHHHHHHHHHCCCCEEEECCHHHCCCCHHHHHHHHHHHHHCCCCCCCEEE
T ss_conf 88863167875788-41778972279988656888656431687489613220322568899999988510268601698
Q ss_pred --CC--------------CCCCEECCCCCCHHHHHHHHHHCCCCEEEEECCCHHHHHH-HHHHHHHCCCC
Q ss_conf --35--------------6664131578897899999975495399970457799999-99878744786
Q gi|254780869|r 359 --ED--------------AECPVHVSGHPYPNDLKRMYQWIRPQVLVAIHGEPLHLVA-HKELALQEGIA 411 (559)
Q Consensus 359 --~~--------------~~~~iH~SGHa~~edl~~li~~ikPk~~IPvHGe~rhl~~-h~~la~~~gv~ 411 (559)
+| -...+-+||- -.||--+-+.++=---+-|.=..+.|-. .+++|.+.+-.
T Consensus 190 ASNDaTAGGai~AL~AQgl~G~v~iSGQ--DaD~Aa~~Rv~~GtQT~~VyK~~~~la~~AA~iaV~L~~~ 257 (307)
T TIGR02634 190 ASNDATAGGAIQALSAQGLAGKVAISGQ--DADLAAIKRVVDGTQTMTVYKPIRKLAKKAAEIAVELGNG 257 (307)
T ss_pred ECCCCCHHHHHHHHHHCCCCCCEECCCC--CHHHHHHHHHHCCCCEEEEEHHHHHHHHHHHHHHHHHHCC
T ss_conf 6387763479999861673022020355--3458988987257622788551899999999999987247
No 274
>PRK06507 consensus
Probab=28.66 E-value=34 Score=13.29 Aligned_cols=48 Identities=8% Similarity=0.153 Sum_probs=25.1
Q ss_pred CCCCCHHHHHHHHHHHHHHCCCCEEEEECHHH-------HHHHHHHHHHHHHHCCEEEEE
Q ss_conf 87777879999999998627983999941477-------899999999998718869984
Q gi|254780869|r 205 GTCISEKGIKKNIYDIMKNAKGCVLVTTFSSS-------VSRIRSIIDIAEQIGRKIVLL 257 (559)
Q Consensus 205 ~~~~sE~~v~~~i~~~~~~~~grViv~~fasn-------i~Ri~~i~~~a~~~~R~v~i~ 257 (559)
++.+.-..+ ++.+.. +-+.++-|+.+| -+.+++|+++|++.+.-+++.
T Consensus 149 g~~~d~~~l----e~~~~~-~tk~iil~~P~NPTG~v~s~~~l~~i~~~a~~~~~v~vis 203 (400)
T PRK06507 149 GFKLRPEDL----EAAITP-RTKWLFLNFPNNPTGAACTRAEMAAIAEVMLRHPHVWIMT 203 (400)
T ss_pred CCCCCHHHH----HHHCCC-CCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCCEECC
T ss_conf 764169999----974675-6649997499293128864779999998665316821405
No 275
>PRK12737 gatY tagatose-bisphosphate aldolase; Reviewed
Probab=28.57 E-value=34 Score=13.28 Aligned_cols=42 Identities=14% Similarity=0.351 Sum_probs=32.7
Q ss_pred HHHHHHHHC-CCCEEEEEC-HHHHHHHHHHHHHHHHHCCEEEEE
Q ss_conf 999998627-983999941-477899999999998718869984
Q gi|254780869|r 216 NIYDIMKNA-KGCVLVTTF-SSSVSRIRSIIDIAEQIGRKIVLL 257 (559)
Q Consensus 216 ~i~~~~~~~-~grViv~~f-asni~Ri~~i~~~a~~~~R~v~i~ 257 (559)
++.+++..+ ++.--|++| ..|.+-+..++++|++.+.++.+.
T Consensus 5 ~~kelL~~A~~~~yAV~AfNv~n~e~~~Avi~AAee~~sPvIlq 48 (284)
T PRK12737 5 STKNMLKKAQAEGYAVPAFNIHNLETLQVVVETAAELRSPVILA 48 (284)
T ss_pred CHHHHHHHHHHCCCEEEEEEECCHHHHHHHHHHHHHHCCCEEEE
T ss_conf 68999999998893799988899999999999999978998999
No 276
>COG0761 lytB 4-Hydroxy-3-methylbut-2-enyl diphosphate reductase IspH [Lipid metabolism]
Probab=28.53 E-value=34 Score=13.27 Aligned_cols=22 Identities=27% Similarity=0.327 Sum_probs=7.9
Q ss_pred HHHHHHHH-HHHHHHCCEEEEEC
Q ss_conf 89999999-99987188699844
Q gi|254780869|r 237 VSRIRSII-DIAEQIGRKIVLLG 258 (559)
Q Consensus 237 i~Ri~~i~-~~a~~~~R~v~i~G 258 (559)
++|..++. ++.+++|++|++.|
T Consensus 16 V~RAI~ive~al~~~g~pIyv~~ 38 (294)
T COG0761 16 VDRAIQIVERALEEYGAPIYVRH 38 (294)
T ss_pred HHHHHHHHHHHHHHCCCCEEEEE
T ss_conf 89999999999997199858970
No 277
>cd04603 CBS_pair_KefB_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the KefB (Kef-type K+ transport systems) domain which is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=28.44 E-value=34 Score=13.26 Aligned_cols=84 Identities=13% Similarity=-0.027 Sum_probs=49.8
Q ss_pred HHHHHHHHHHCCCCCEEEECCC-EEEEECC------CCEEEEEEEECCCEEECCCCEECCCCHHHHHHHHHHHCCEEEEE
Q ss_conf 9999987874478631550032-2789738------97045012321320212331002550588999974038749999
Q gi|254780869|r 398 LVAHKELALQEGIACVPPVRNG-KMLRLFP------DPIEIIDEVVHGLFLKDGFLIGKFADLGIAKRRQLSFVGHLSVN 470 (559)
Q Consensus 398 l~~h~~la~~~gv~~i~l~~NG-d~i~l~~------~~~~i~~~v~~g~~~vDG~~i~~~~~~vl~eR~~Ls~~GiV~V~ 470 (559)
|....++..+.|+..+.+++++ ..+-+-. -.....+..+.+.+|...--+...++.+..--+.|.+.++ -+.
T Consensus 12 L~~a~~~~~e~~~~~i~VVD~~~k~vG~it~~Dll~~~~~~~~~~~V~d~m~~~v~~i~~~~~v~dalr~~~~~~~-~~l 90 (111)
T cd04603 12 LREAIKMINELGARAVVVVDEENKVLGQVTLSDLLEIGPNDYETLKVCEVYIVPVPIVYCDSKVTDLLRIFRETEP-PVV 90 (111)
T ss_pred HHHHHHHHHHCCCCEEEEECCCCCEEEEEEHHHHHHHCHHHHHCCCHHHHHCCCCCCCCCCCCHHHHHHHHHHCCC-CEE
T ss_conf 9999999987699768998899968899889998643844553243877515677463899768999999874499-889
Q ss_pred EEECCCCCEEEC
Q ss_conf 998389988005
Q gi|254780869|r 471 VLLDNHYNIFGV 482 (559)
Q Consensus 471 viid~~~~l~~~ 482 (559)
.++|.++++++-
T Consensus 91 ~VVD~~grlvGi 102 (111)
T cd04603 91 AVVDKEGKLVGT 102 (111)
T ss_pred EEECCCCCEEEE
T ss_conf 999389979999
No 278
>COG4822 CbiK Cobalamin biosynthesis protein CbiK, Co2+ chelatase [Coenzyme metabolism]
Probab=28.10 E-value=34 Score=13.22 Aligned_cols=113 Identities=23% Similarity=0.224 Sum_probs=58.4
Q ss_pred HHCCCCCCCEEEEEECCCCCHHHHHHHHCCCCCCCCCCCCCCEEEEEEECCCCHHHH-HHHHHHHHHCCCEEEEECCCCC
Q ss_conf 622388020899996696326889885202777653026896699996158861778-9999976510311343035666
Q gi|254780869|r 285 SFGLYPREQLIVIATGSQGEPRSALAQLSRGEMRNVKLAEKDTVIFSSRAIPGNEVA-IGHIKNRLVEQGVRVIAEDAEC 363 (559)
Q Consensus 285 ~~~~~p~~~~~ii~TGsqge~~a~l~ria~~~~~~i~l~~~D~vI~ss~~ipGnE~~-~~~~~n~l~~~g~~vi~~~~~~ 363 (559)
-++++...+-+.+.| |..+|+++++..++ +.+|=++-.|||.|-. +-+..|.+...=-+ +..+.
T Consensus 47 IIkkLK~rdgi~~dT-----P~~aL~klk~~gy~-------eviiQ~lhiIpG~EyEklvr~V~~~~~dF~~-lkig~-- 111 (265)
T COG4822 47 IIKKLKERDGIDFDT-----PIQALNKLKDQGYE-------EVIIQPLHIIPGIEYEKLVREVNKYSNDFKR-LKIGR-- 111 (265)
T ss_pred HHHHHHHHCCCCCCC-----HHHHHHHHHHCCCH-------HEEEEEEEECCCHHHHHHHHHHHHHHHHHHE-EECCC--
T ss_conf 999988626942288-----89999999971513-------1253332214726799999999987633031-46177--
Q ss_pred CEECCCCCCHHHHHHHHHHCCCC---------EEEEECCCHHHHHHH-HHH---HHHCCCCCEEEE
Q ss_conf 41315788978999999754953---------999704577999999-987---874478631550
Q gi|254780869|r 364 PVHVSGHPYPNDLKRMYQWIRPQ---------VLVAIHGEPLHLVAH-KEL---ALQEGIACVPPV 416 (559)
Q Consensus 364 ~iH~SGHa~~edl~~li~~ikPk---------~~IPvHGe~rhl~~h-~~l---a~~~gv~~i~l~ 416 (559)
++ .+ +.+|-+.++++++-. .+.--||.-.|..+. +.| ..+.|+.++++.
T Consensus 112 Pl-Ly---~k~DYe~~v~aik~~~ppl~k~e~~vlmgHGt~h~s~~~YacLd~~~~~~~f~~v~v~ 173 (265)
T COG4822 112 PL-LY---YKNDYEICVEAIKDQIPPLNKDEILVLMGHGTDHHSNAAYACLDHVLDEYGFDNVFVA 173 (265)
T ss_pred CE-EE---CHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHCCCCCEEEE
T ss_conf 31-54---0105999999999766886767279998358875177899999999986488856999
No 279
>TIGR01418 PEP_synth phosphoenolpyruvate synthase; InterPro: IPR006319 This family represents phosphoenolpyruvate synthase; also called pyruvate,water dikinase and PEP synthase. The member from Methanococcus jannaschii contains a large intein. This enzyme generates phosphoenolpyruvate (PEP) from pyruvate, hydrolyzing ATP to AMP and releasing inorganic phosphate in the process. The enzyme shows extensive homology to other enzymes that use PEP as substrate or product. This enzyme may provide PEP for gluconeogenesis, for PTS-type carbohydrate transport systems, or for other processes. ; GO: 0008986 pyruvate water dikinase activity, 0006094 gluconeogenesis.
Probab=28.07 E-value=34 Score=13.22 Aligned_cols=336 Identities=16% Similarity=0.237 Sum_probs=146.0
Q ss_pred EEEEEEECCCCCCCCC--EEEEEECCC---EEEECCCCEECCCCCCCCC-CC--------HH----HH--HHCCCCCCEE
Q ss_conf 8999985567777653--567987681---7998334024677665423-89--------88----99--8608788299
Q gi|254780869|r 134 FSIESVRVNHSIPETM--ALVIRSPVG---NIVHTGDWKLDDDAILGDV-TD--------KD----SL--CAIGNEGILA 193 (559)
Q Consensus 134 ~~v~~~~~~Hsip~a~--~~~I~t~~g---~i~ytGDfk~d~~p~~g~~-~d--------~~----~l--~~~~~~gv~~ 193 (559)
+.|-.-.+--|=.++. +|-|||.-| .++=|.=|=+.+.=|-|.- +| +. .+ +++|+|.+.
T Consensus 186 laVgVQkMVrSdl~~SGVMFT~dteTGf~d~v~IesawGLGE~vV~G~VtPDey~V~KptL~~g~~aI~e~~~g~K~~k- 264 (877)
T TIGR01418 186 LAVGVQKMVRSDLGSSGVMFTIDTETGFKDAVFIESAWGLGEAVVGGAVTPDEYVVFKPTLEQGKKAILEKKLGSKKIK- 264 (877)
T ss_pred EEEEEEECCCHHHHHCCCCEECCCCCCCCCEEEEEEEECCCCCEECCEECCCEEEEECCCHHCCCCCEEEEECCCCCEE-
T ss_conf 4553331002121204752015777787564899612001000106435376579843601028974799851686655-
Q ss_pred EEECCC---CCCCC-CCCCCH-HH---HHHHHHHHHHHCCCCEEEEECHHHHHHHHHHHHHHHHHCCEEEEEC--HHHHH
Q ss_conf 996356---45788-877778-79---9999999986279839999414778999999999987188699844--86999
Q gi|254780869|r 194 LMCDST---NAMRE-GTCISE-KG---IKKNIYDIMKNAKGCVLVTTFSSSVSRIRSIIDIAEQIGRKIVLLG--SSLKR 263 (559)
Q Consensus 194 Li~esT---~~~~~-~~~~sE-~~---v~~~i~~~~~~~~grViv~~fasni~Ri~~i~~~a~~~~R~v~i~G--rs~~~ 263 (559)
|+=+-+ +.... -..++| .. --+.+.+++++.. |==-.|+=+=+=|+++++.|.+--.. |+ +.-.|
T Consensus 265 mvY~~~~~~~~~~k~~~~~~~~~~lrrkhPavaevvekyG--irPd~fsL~DeEi~~LA~~a~~IE~H---Y~k~~g~yr 339 (877)
T TIGR01418 265 MVYDPDGGKNKETKIVEVPEEERDLRRKHPAVAEVVEKYG--IRPDKFSLSDEEILELAKLAVKIEKH---YSKKAGRYR 339 (877)
T ss_pred EEECCCCCCCCEEEECCCCHHHHHHHHCCCHHHHHHHHHC--CCCCCCCCCHHHHHHHHHHHHHHHHH---HCCCCCCCC
T ss_conf 6777769887514625687389986330642657777617--88886517878999998886335321---078988306
Q ss_pred H--HHHHHH--CCC------CC-CCCCCCCH--HHHCCCC----------CC--CEEEEEECCCCCHHHHHHHHCCCCCC
Q ss_conf 9--998874--287------67-76542265--6622388----------02--08999966963268898852027776
Q gi|254780869|r 264 V--VSVAID--VGI------IK-KDQLFLSD--ESFGLYP----------RE--QLIVIATGSQGEPRSALAQLSRGEMR 318 (559)
Q Consensus 264 ~--~~~a~~--~g~------l~-~~~~~i~~--~~~~~~p----------~~--~~~ii~TGsqge~~a~l~ria~~~~~ 318 (559)
. ++=|++ ||. +. -|.++.+. ++.++.| .+ +-=||++| +|+-.+||.|.=+
T Consensus 340 PMDIEWAkD~~LG~~g~ifivQARPETv~S~k~~E~~n~P~~e~~~~~~P~Eerkg~vlv~G-----~a~g~~Ia~Gkvk 414 (877)
T TIGR01418 340 PMDIEWAKDFDLGEDGEIFIVQARPETVQSRKKKEAENKPVEERYELKGPEEERKGKVLVKG-----RAAGPGIASGKVK 414 (877)
T ss_pred CCCEEEEEECCCCCCCCEEEEECCCCCEEECCCCCCCCCCCEEEECCCCCCCCCCCEEEEEE-----ECCCCCCCCCCCE
T ss_conf 86225200103798975789975873110124530023870565028878601367189996-----3226640356526
Q ss_pred -------C--CCCCCCCEEEEEEECCCCHHHHHHHHHHHHHCCCEEEEECCCCCCEECCCCCCHHHHHHHHHHCCCCEEE
Q ss_conf -------5--3026896699996158861778999997651031134303566641315788978999999754953999
Q gi|254780869|r 319 -------N--VKLAEKDTVIFSSRAIPGNEVAIGHIKNRLVEQGVRVIAEDAECPVHVSGHPYPNDLKRMYQWIRPQVLV 389 (559)
Q Consensus 319 -------~--i~l~~~D~vI~ss~~ipGnE~~~~~~~n~l~~~g~~vi~~~~~~~iH~SGHa~~edl~~li~~ikPk~~I 389 (559)
. =++++||-.| .--+=|-+|+ +-++-+=|+|+..-. || ||
T Consensus 415 Vi~~~~e~k~~~~~~GdiLV-T~mTDPDWeP--------~MK~AsAIVTn~GG~---Tc-HA------------------ 463 (877)
T TIGR01418 415 VILDLKEMKVDKFEEGDILV-TDMTDPDWEP--------VMKRASAIVTNEGGR---TC-HA------------------ 463 (877)
T ss_pred EECCHHHHCCCCCCCCCEEE-ECCCCCCCHH--------HCCCCCEEEECCCCC---HH-HH------------------
T ss_conf 87574343204438864687-5787428121--------221303047078875---00-89------------------
Q ss_pred EECCCHHHHHHHHHHHHHCCCCC-------EEEECCCEEEEECCCCEEEEEEEECCCEEECCCCEECCCCHHHHHHHHHH
Q ss_conf 70457799999998787447863-------15500322789738970450123213202123310025505889999740
Q gi|254780869|r 390 AIHGEPLHLVAHKELALQEGIAC-------VPPVRNGKMLRLFPDPIEIIDEVVHGLFLKDGFLIGKFADLGIAKRRQLS 462 (559)
Q Consensus 390 PvHGe~rhl~~h~~la~~~gv~~-------i~l~~NGd~i~l~~~~~~i~~~v~~g~~~vDG~~i~~~~~~vl~eR~~Ls 462 (559)
+=+|+++|||= |-.+.||+.|.++..+- ++|.+| +|...- .+....++..-.
T Consensus 464 ------------AIVaRELGiPAVVG~~~AT~~lkdG~~VTVdc~eG------dtG~VY-~Gr~~~--T~E~~~~~~~~e 522 (877)
T TIGR01418 464 ------------AIVARELGIPAVVGTGDATKKLKDGEEVTVDCAEG------DTGYVY-AGRVEK--TEEAVEEKLEYE 522 (877)
T ss_pred ------------HHHHHHCCCCCEECCCHHHHHHCCCCEEEEECCCC------CCCCEE-CCCEEE--CHHHHHHHHCCC
T ss_conf ------------99987558882664703456510878689854448------813134-570230--023254431567
Q ss_pred HC--C--EEEEEEEECCCCCE---EECCEEEEECCE-ECCCCHHHHHHHHHHHHHHHHHHHHHCCCCC---HHHHHHHHH
Q ss_conf 38--7--49999998389988---005379994012-1256658899999999999998522003689---899999999
Q gi|254780869|r 463 FV--G--HLSVNVLLDNHYNI---FGVPEIVDIGIP-AYDGDGGKIHKLLLKTVITTVVDLPQFRRKD---LKLLRESIS 531 (559)
Q Consensus 463 ~~--G--iV~V~viid~~~~l---~~~P~I~~~Gl~-~~~~~~~~l~~~i~~~i~~~i~~~~~~~~~d---~~~lk~~ir 531 (559)
-+ + =+..++.-.-..++ ++.|+-..+ +. ....|.--| ..++-++.+.|+-.+...-.+ ....|.+++
T Consensus 523 v~iq~~~~v~l~~~P~t~Tki~mNvg~Pe~Af~-~ar~lP~dGVGL-aR~EfII~~~i~~HP~aLi~~~d~~~~~K~EI~ 600 (877)
T TIGR01418 523 VEIQEDAEVELSNMPETATKIYMNVGNPERAFR-FARALPNDGVGL-ARIEFIILNWIKIHPLALIDDDDLKEVEKAEIE 600 (877)
T ss_pred CCCCCCCCCCCCCCCCCCCEEEEECCCCCHHHH-HHHHCCCCCCHH-HHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHH
T ss_conf 411266533167678766478985388545789-975257886227-889999985776546874577687758889998
Q ss_pred HHH
Q ss_conf 999
Q gi|254780869|r 532 SAL 534 (559)
Q Consensus 532 ~~i 534 (559)
+.+
T Consensus 601 el~ 603 (877)
T TIGR01418 601 ELM 603 (877)
T ss_pred HHH
T ss_conf 632
No 280
>PRK11538 hypothetical protein; Provisional
Probab=27.92 E-value=32 Score=13.41 Aligned_cols=15 Identities=20% Similarity=0.399 Sum_probs=7.4
Q ss_pred CCEEEEEECCCCCHH
Q ss_conf 208999966963268
Q gi|254780869|r 292 EQLIVIATGSQGEPR 306 (559)
Q Consensus 292 ~~~~ii~TGsqge~~ 306 (559)
-+.++||||+-.+-.
T Consensus 34 ~DyfVIatg~S~rh~ 48 (105)
T PRK11538 34 TDCMIICTGTSSRHV 48 (105)
T ss_pred CCEEEEEEECCHHHH
T ss_conf 468999984878999
No 281
>cd02193 PurL Formylglycinamide ribonucleotide amidotransferase (FGAR-AT) catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to formylglycinamidine ribonucleotide (FGAM), ADP, phosphate, and glutamate in the fourth step of the purine biosynthetic pathway. In eukaryotes and Gram-negative bacteria, FGAR-AT is encoded by the purL gene as a multidomain protein with a molecular mass of about 140 kDa. In Gram-positive bacteria and archaea FGAR-AT is a complex of three proteins: PurS, PurL, and PurQ. PurL itself contains two tandem N- and C-terminal domains (four domains altogether). The N-terminal domains bind ATP and are related to the ATP-binding domains of HypE, ThiL, SelD and PurM.
Probab=27.68 E-value=35 Score=13.17 Aligned_cols=22 Identities=14% Similarity=0.143 Sum_probs=14.6
Q ss_pred CCCCHHHHHHHCCCCEECCHHH
Q ss_conf 2160788898629977929999
Q gi|254780869|r 80 HYGALHDLWSFLHVPVYASPFA 101 (559)
Q Consensus 80 HiGalp~l~~~~~~pIY~s~~t 101 (559)
-+-|+....+.+++||.+...+
T Consensus 65 av~Gi~d~c~~l~iPvvsGnvS 86 (272)
T cd02193 65 AVKGVAELCNQLGLPIPVGKDR 86 (272)
T ss_pred HHHHHHHHHHHHCCCEECCCCC
T ss_conf 9999999988629885056231
No 282
>pfam00155 Aminotran_1_2 Aminotransferase class I and II.
Probab=27.51 E-value=35 Score=13.15 Aligned_cols=20 Identities=10% Similarity=0.405 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHCCEEEE
Q ss_conf 89999999999871886998
Q gi|254780869|r 237 VSRIRSIIDIAEQIGRKIVL 256 (559)
Q Consensus 237 i~Ri~~i~~~a~~~~R~v~i 256 (559)
.++++.++++|++.+--|+.
T Consensus 155 ~~~l~~l~~~a~~~~~~ii~ 174 (351)
T pfam00155 155 LEELEKLLDLAKEHNILLLV 174 (351)
T ss_pred HHHHHHHHHHHCCCCEEEEE
T ss_conf 89999998653028889998
No 283
>KOG2862 consensus
Probab=27.44 E-value=35 Score=13.14 Aligned_cols=90 Identities=21% Similarity=0.288 Sum_probs=46.6
Q ss_pred EEEEEECCCCCCCCCEEEEEECCCEE--EECCCCEECCCCCCCCCCCHHHHHHCCCCCCEEEEECCCCCCCCCCCCCHHH
Q ss_conf 99998556777765356798768179--9833402467766542389889986087882999963564578887777879
Q gi|254780869|r 135 SIESVRVNHSIPETMALVIRSPVGNI--VHTGDWKLDDDAILGDVTDKDSLCAIGNEGILALMCDSTNAMREGTCISEKG 212 (559)
Q Consensus 135 ~v~~~~~~Hsip~a~~~~I~t~~g~i--~ytGDfk~d~~p~~g~~~d~~~l~~~~~~gv~~Li~esT~~~~~~~~~sE~~ 212 (559)
++-+--++||--+++..-+-.|+.++ +-||-|-- +..| ...++|-+ |+.+ ++ ..|.+-+-.+
T Consensus 70 tf~isgsGh~g~E~al~N~lePgd~vLv~~~G~wg~-------ra~D--~~~r~ga~-V~~v--~~----~~G~~~~le~ 133 (385)
T KOG2862 70 TFVISGSGHSGWEAALVNLLEPGDNVLVVSTGTWGQ-------RAAD--CARRYGAE-VDVV--EA----DIGQAVPLEE 133 (385)
T ss_pred EEEEECCCCCHHHHHHHHHCCCCCEEEEEEECHHHH-------HHHH--HHHHHCCE-EEEE--EC----CCCCCCCHHH
T ss_conf 289836984168998875257897499997233777-------8899--99860865-5587--15----8556754999
Q ss_pred HHHHHHHHHHHCCCCEEEEECHHHHHHHHHH
Q ss_conf 9999999986279839999414778999999
Q gi|254780869|r 213 IKKNIYDIMKNAKGCVLVTTFSSSVSRIRSI 243 (559)
Q Consensus 213 v~~~i~~~~~~~~grViv~~fasni~Ri~~i 243 (559)
+.+.+.+ ...+.++|+-=.|.-+=+|.+
T Consensus 134 i~~~lsq---h~p~~vfv~hgdsSTgV~q~~ 161 (385)
T KOG2862 134 ITEKLSQ---HKPKAVFVTHGDSSTGVLQDL 161 (385)
T ss_pred HHHHHHH---CCCCEEEEEECCCCCCCCCHH
T ss_conf 9999871---587459998347641111557
No 284
>PRK07367 consensus
Probab=27.43 E-value=35 Score=13.14 Aligned_cols=20 Identities=10% Similarity=0.137 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHCCEEEE
Q ss_conf 89999999999871886998
Q gi|254780869|r 237 VSRIRSIIDIAEQIGRKIVL 256 (559)
Q Consensus 237 i~Ri~~i~~~a~~~~R~v~i 256 (559)
-++++.++++|++.+-.|+-
T Consensus 180 ~~~l~~l~~~a~~~~~~iIs 199 (385)
T PRK07367 180 PEEIAALAEVIVEHDLYVVS 199 (385)
T ss_pred HHHHHHHHHHHHHCCEEEEE
T ss_conf 78888998888755869971
No 285
>pfam01116 F_bP_aldolase Fructose-bisphosphate aldolase class-II.
Probab=27.28 E-value=35 Score=13.12 Aligned_cols=41 Identities=17% Similarity=0.464 Sum_probs=31.9
Q ss_pred HHHHHHHC-CCCEEEEEC-HHHHHHHHHHHHHHHHHCCEEEEE
Q ss_conf 99998627-983999941-477899999999998718869984
Q gi|254780869|r 217 IYDIMKNA-KGCVLVTTF-SSSVSRIRSIIDIAEQIGRKIVLL 257 (559)
Q Consensus 217 i~~~~~~~-~grViv~~f-asni~Ri~~i~~~a~~~~R~v~i~ 257 (559)
+.++++.+ ++.--|++| ..|.+-++.++++|++.+.+|.+.
T Consensus 4 ~k~ll~~A~~~~yAV~afNv~~~e~~~avi~AAee~~sPvIlq 46 (283)
T pfam01116 4 LKELLDKAKEGGYAVPAFNVNNLETINAVLEAAEEANSPVIIQ 46 (283)
T ss_pred HHHHHHHHHHCCEEEEEEEECCHHHHHHHHHHHHHHCCCEEEE
T ss_conf 7999999998892799876798999999999999969999999
No 286
>pfam06849 DUF1246 Protein of unknown function (DUF1246). This family represents the N-terminus of a number of hypothetical archaeal proteins of unknown function.
Probab=27.05 E-value=36 Score=13.10 Aligned_cols=37 Identities=22% Similarity=0.272 Sum_probs=27.1
Q ss_pred HHCCCEEEEECCCCCCCCCHHHHHHHCCCCEECCHHH
Q ss_conf 4124689960543012160788898629977929999
Q gi|254780869|r 65 RKNLMAIFITHAHEDHYGALHDLWSFLHVPVYASPFA 101 (559)
Q Consensus 65 ~~~i~~i~iTH~H~DHiGalp~l~~~~~~pIY~s~~t 101 (559)
..+-.+|||-|+..=-.-+..-+-..+.+|+|+++.-
T Consensus 62 L~~~N~I~IPhgSfv~Y~G~~~ie~~~~VP~FGNR~l 98 (124)
T pfam06849 62 LRENNAIFIPHGSFVAYVGYDRVENEFKVPIFGNRNL 98 (124)
T ss_pred HHHCCEEEECCCCEEEEECHHHHHHCCCCCEECCHHH
T ss_conf 9988979974888467655899860278870047888
No 287
>KOG1359 consensus
Probab=27.00 E-value=36 Score=13.09 Aligned_cols=33 Identities=9% Similarity=-0.132 Sum_probs=14.7
Q ss_pred HHHHHHHHHCCEEEEEEEEC--CCCCEEECCEEEE
Q ss_conf 89999740387499999983--8998800537999
Q gi|254780869|r 455 IAKRRQLSFVGHLSVNVLLD--NHYNIFGVPEIVD 487 (559)
Q Consensus 455 l~eR~~Ls~~GiV~V~viid--~~~~l~~~P~I~~ 487 (559)
.+--+-|..-|+.++.+-.- .+++---..||+.
T Consensus 358 ~~~ad~lLk~Gi~Vigfs~PvVP~gkariRVqiSA 392 (417)
T KOG1359 358 SKMADELLKRGIYVIGFSYPVVPKGKARIRVQISA 392 (417)
T ss_pred HHHHHHHHHCCCEEEEECCCCCCCCCEEEEEEEEH
T ss_conf 88899998557169862587678884479999701
No 288
>TIGR00619 sbcd nuclease SbcCD, D subunit; InterPro: IPR004593 All proteins in this family for which functions are known are double-stranded DNA exonuclease (as part of a complex with SbcC homologs). This complex functions in the initiation of recombination and recombinational repair and is particularly important in regulating the stability of DNA sections that can form secondary structures. This family is likely to be homologous to the MRE11 family.; GO: 0004527 exonuclease activity, 0006259 DNA metabolic process.
Probab=26.84 E-value=36 Score=13.07 Aligned_cols=98 Identities=18% Similarity=0.329 Sum_probs=48.7
Q ss_pred EEEECCCCEE----CC---CCCCCCCC---CHHH-H---HH-CCCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHH
Q ss_conf 7998334024----67---76654238---9889-9---86-08788299996356457888777787999999999862
Q gi|254780869|r 159 NIVHTGDWKL----DD---DAILGDVT---DKDS-L---CA-IGNEGILALMCDSTNAMREGTCISEKGIKKNIYDIMKN 223 (559)
Q Consensus 159 ~i~ytGDfk~----d~---~p~~g~~~---d~~~-l---~~-~~~~gv~~Li~esT~~~~~~~~~sE~~v~~~i~~~~~~ 223 (559)
+|+||.||=+ .. +|-.|-.+ +... | .+ +.++.+|++|+-|=--+.-.++.-++++-.++-.-+..
T Consensus 2 riLHtsDwHlGk~l~~GhinPatGl~Sr~~e~~~~L~~l~~~~~~e~~Da~lvAGDvFD~~~P~~ea~~L~~~~l~~L~~ 81 (275)
T TIGR00619 2 RILHTSDWHLGKTLEGGHINPATGLVSRLAEQKAFLDDLLEILKAEQVDALLVAGDVFDTANPPAEAQELFYAFLLNLSD 81 (275)
T ss_pred CCHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHH
T ss_conf 40013057513233787103002255489999999999999997389988997000078898879999999999999985
Q ss_pred CCCC--EEEEECHH-HHHHHHHHHHHHHHHCCEEEEEC
Q ss_conf 7983--99994147-78999999999987188699844
Q gi|254780869|r 224 AKGC--VLVTTFSS-SVSRIRSIIDIAEQIGRKIVLLG 258 (559)
Q Consensus 224 ~~gr--Viv~~fas-ni~Ri~~i~~~a~~~~R~v~i~G 258 (559)
+.-| ++|.+=.. +.+|+...-.+....| |.+.|
T Consensus 82 ~~~R~p~Vvi~GNHD~~~~Ls~~~~Ll~~~~--~~v~~ 117 (275)
T TIGR00619 82 ANPRLPIVVISGNHDSADRLSAAKKLLKELG--VFVVG 117 (275)
T ss_pred CCCCEEEEEECCCCCCHHHHCHHHHHHHHCC--CEEEE
T ss_conf 3896127870478887786111677897709--54420
No 289
>PRK00197 proA gamma-glutamyl phosphate reductase; Provisional
Probab=26.76 E-value=36 Score=13.06 Aligned_cols=72 Identities=15% Similarity=0.196 Sum_probs=30.7
Q ss_pred CCEEEEEEECCCCHHHHHHHHHHHHHCCCEEEEECCCCCCE-ECCCCCCHHHHHHHHHHCCCCEEEEECCCHHHHHHH
Q ss_conf 96699996158861778999997651031134303566641-315788978999999754953999704577999999
Q gi|254780869|r 325 KDTVIFSSRAIPGNEVAIGHIKNRLVEQGVRVIAEDAECPV-HVSGHPYPNDLKRMYQWIRPQVLVAIHGEPLHLVAH 401 (559)
Q Consensus 325 ~D~vI~ss~~ipGnE~~~~~~~n~l~~~g~~vi~~~~~~~i-H~SGHa~~edl~~li~~ikPk~~IPvHGe~rhl~~h 401 (559)
-++++..... .+....++.+.|.+.|+++.-......+ ..--.|+.+|.. -+++-|..-|=+=-....-++|
T Consensus 259 ~etlLVh~~i---~~~~l~~l~~~l~~~gvei~gd~~~~~~~~~~~~a~~~d~~--~E~l~~ilsv~~V~~~deAI~h 331 (416)
T PRK00197 259 AETLLVHEAI---AEEFLPRLAKALAEAGVELRGDEAALALLPGVVPATEEDWD--TEYLSLILAVKVVDGLDEAIAH 331 (416)
T ss_pred CEEEEEEHHH---HHHHHHHHHHHHHHCCCEECCCHHHHHHCCCCCCCCCCCHH--HHHHCCEEEEEEECCHHHHHHH
T ss_conf 1057874878---78799999999997699743788999755676457533266--6741860169996999999999
No 290
>PRK08363 alanine aminotransferase; Validated
Probab=26.65 E-value=36 Score=13.05 Aligned_cols=47 Identities=21% Similarity=0.290 Sum_probs=24.7
Q ss_pred CCCCCCHHHHHHHHHHHHHHCCCCEEEEECHHH-------HHHHHHHHHHHHHHCCEEE
Q ss_conf 887777879999999998627983999941477-------8999999999987188699
Q gi|254780869|r 204 EGTCISEKGIKKNIYDIMKNAKGCVLVTTFSSS-------VSRIRSIIDIAEQIGRKIV 255 (559)
Q Consensus 204 ~~~~~sE~~v~~~i~~~~~~~~grViv~~fasn-------i~Ri~~i~~~a~~~~R~v~ 255 (559)
+++.+.-..++..+ .+ +-+.++-|..+| -++++.++++|++++--|+
T Consensus 150 ~~~~~d~~~l~~~i----~~-~tk~i~l~nP~NPTG~v~s~~~l~~i~~la~~~~~~vI 203 (398)
T PRK08363 150 EGWQPDIDDIRKKI----TE-KTKAIAVINPNNPTGALYDKKTLKEILDIAGEHDLPVI 203 (398)
T ss_pred CCCCCCHHHHHHHC----CC-CCEEEEECCCCCCCCCCCCHHHHHHHHHHHHHCCCEEE
T ss_conf 48968999999753----11-37299987999988886548899999999875596476
No 291
>PRK06801 hypothetical protein; Provisional
Probab=26.64 E-value=36 Score=13.05 Aligned_cols=156 Identities=16% Similarity=0.156 Sum_probs=74.6
Q ss_pred HHHHHHHHC-CCCEEEEEC-HHHHHHHHHHHHHHHHHCCEEEEECH-HHHHHHHHHHHCCCCCCCCC---CCCHHHHCCC
Q ss_conf 999998627-983999941-47789999999999871886998448-69999998874287677654---2265662238
Q gi|254780869|r 216 NIYDIMKNA-KGCVLVTTF-SSSVSRIRSIIDIAEQIGRKIVLLGS-SLKRVVSVAIDVGIIKKDQL---FLSDESFGLY 289 (559)
Q Consensus 216 ~i~~~~~~~-~grViv~~f-asni~Ri~~i~~~a~~~~R~v~i~Gr-s~~~~~~~a~~~g~l~~~~~---~i~~~~~~~~ 289 (559)
++.+++..+ ++.--|++| ..|.+-++.++++|++.+.+|.+.-- +..+ |...+.. ....-+....
T Consensus 5 ~~k~lL~~A~~~~yAV~AfNv~n~e~~~avi~AAee~~sPvIlq~s~~~~~---------~~~~~~~~~~~~~~a~~~~V 75 (286)
T PRK06801 5 SLANGLAHARKHGYALGAFNVLDSHFLRALFAAAKQERSPFIINIAEVHFK---------YISLESLVEAVKFEAAHHDI 75 (286)
T ss_pred CHHHHHHHHHHCCCEEEEEEECCHHHHHHHHHHHHHHCCCEEEECCHHHHH---------HCCHHHHHHHHHHHHHHCCC
T ss_conf 689999999988947999888999999999999999787989980675775---------66999999999999987799
Q ss_pred CCCCEEEEEECCCCCHHHHHHHHCCCCCCCCCCCCC-CEEEEEEECCCCHHHHHHH---HHHHHHCCCEEEEE----CCC
Q ss_conf 802089999669632688988520277765302689-6699996158861778999---99765103113430----356
Q gi|254780869|r 290 PREQLIVIATGSQGEPRSALAQLSRGEMRNVKLAEK-DTVIFSSRAIPGNEVAIGH---IKNRLVEQGVRVIA----EDA 361 (559)
Q Consensus 290 p~~~~~ii~TGsqge~~a~l~ria~~~~~~i~l~~~-D~vI~ss~~ipGnE~~~~~---~~n~l~~~g~~vi~----~~~ 361 (559)
| +. +.=..|..+....+. ++.| +.|.|-.+..| .|..+.. +.+.-...|+.|=- -+.
T Consensus 76 P----V~-lHLDHg~~~e~i~~a---------i~~Gf~SVM~DgS~l~-~eeNi~~Tk~vve~ah~~gv~VEaElG~vgg 140 (286)
T PRK06801 76 P----VV-LNLDHGLHFEAVVRA---------LRLGFSSVMFDGSTLE-YEENVRQTREVVKMCHAVGVSVEAELGAVGG 140 (286)
T ss_pred C----EE-EECCCCCCHHHHHHH---------HHCCCCEEEEECCCCC-HHHHHHHHHHHHHHHHHCCCEEEEEEEEECC
T ss_conf 8----99-989999999999999---------9829987997499899-9999999999999998849859999631057
Q ss_pred CCCEECCCC------CCHHHHHHHHHHCCCCEEEE----ECCCH
Q ss_conf 664131578------89789999997549539997----04577
Q gi|254780869|r 362 ECPVHVSGH------PYPNDLKRMYQWIRPQVLVA----IHGEP 395 (559)
Q Consensus 362 ~~~iH~SGH------a~~edl~~li~~ikPk~~IP----vHGe~ 395 (559)
..+-+.+++ .+.+|-+++++......+=+ +||.|
T Consensus 141 ~ed~~~~~~~~~~~~T~peea~~Fv~~TgvD~LAvaiGn~HG~y 184 (286)
T PRK06801 141 DEGGALYGEADSNLFTDPAIARDFVDRTGIDALAVAIGNAHGKY 184 (286)
T ss_pred CCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCEEEEECCCCCCCC
T ss_conf 66776557653002689999999999869989975225455676
No 292
>TIGR02764 spore_ybaN_pdaB polysaccharide deacetylase family sporulation protein PdaB; InterPro: IPR014132 This entry describes the YbaN protein family, also called PdaB and SpoVIE, of Gram-positive bacteria. Although ybaN null mutants have only a mild sporulation defect, ybaN/ytrI double mutants show drastically reduced sporulation efficiencies. This synthetic defect suggests the role of this sigmaE-controlled gene in sporulation had been masked by functional redundancy. Members of this family are homologous to a characterised polysaccharide deacetylase; the exact function this protein family is unknown..
Probab=26.59 E-value=36 Score=13.04 Aligned_cols=101 Identities=21% Similarity=0.312 Sum_probs=61.5
Q ss_pred HHHHHHHHHHHHHHHHCCEEEEE----CHHHHHHHHHHHHCCCCC--CCCCCCCHHHHCCCCCCCEEEEEECCCCCHHHH
Q ss_conf 77899999999998718869984----486999999887428767--765422656622388020899996696326889
Q gi|254780869|r 235 SSVSRIRSIIDIAEQIGRKIVLL----GSSLKRVVSVAIDVGIIK--KDQLFLSDESFGLYPREQLIVIATGSQGEPRSA 308 (559)
Q Consensus 235 sni~Ri~~i~~~a~~~~R~v~i~----Grs~~~~~~~a~~~g~l~--~~~~~i~~~~~~~~p~~~~~ii~TGsqge~~a~ 308 (559)
-+|.|.|++++ +-+|++.-+. |.--.+.+++|+++||-- .. =.++..+-++ |-.+.++
T Consensus 85 kd~~~a~~~i~--~~~g~~p~LlRpP~G~fn~~~~~~ae~~GY~~V~Ws-WHvdS~DWkN-PG~e~iv------------ 148 (198)
T TIGR02764 85 KDLLRAQEIIE--KLTGKKPTLLRPPNGAFNKAVLKLAESLGYTVVHWS-WHVDSLDWKN-PGVESIV------------ 148 (198)
T ss_pred HHHHHHHHHHH--HHCCCCEEEEECCCCCCCHHHHHHHHHCCCCEEEEE-CCCCCCCCCC-CCEEHHH------------
T ss_conf 99999888886--510555016568898604689999997399189862-4558835457-8610001------------
Q ss_pred HHHHCCCCCCCCCCCCCCEEEEE-EEC-CCCHHHHHHHHHHHHHCCCEEEEE
Q ss_conf 88520277765302689669999-615-886177899999765103113430
Q gi|254780869|r 309 LAQLSRGEMRNVKLAEKDTVIFS-SRA-IPGNEVAIGHIKNRLVEQGVRVIA 358 (559)
Q Consensus 309 l~ria~~~~~~i~l~~~D~vI~s-s~~-ipGnE~~~~~~~n~l~~~g~~vi~ 358 (559)
.|..+ .+++||-|.|. ++. -+=..++-.+++..|-++|=+-++
T Consensus 149 -~~V~~------~~~~GdIiL~HDASd~~KqT~~ALp~Ii~~LK~~GY~fv~ 193 (198)
T TIGR02764 149 -DRVVK------NTKPGDIILLHDASDSAKQTVKALPEIIKKLKEKGYEFVT 193 (198)
T ss_pred -HHHHC------CCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHCCCEEEE
T ss_conf -11331------2799856987634879744177899998998754953434
No 293
>PRK07709 fructose-bisphosphate aldolase; Provisional
Probab=26.58 E-value=36 Score=13.04 Aligned_cols=42 Identities=19% Similarity=0.340 Sum_probs=32.5
Q ss_pred HHHHHHHHC-CCCEEEEEC-HHHHHHHHHHHHHHHHHCCEEEEE
Q ss_conf 999998627-983999941-477899999999998718869984
Q gi|254780869|r 216 NIYDIMKNA-KGCVLVTTF-SSSVSRIRSIIDIAEQIGRKIVLL 257 (559)
Q Consensus 216 ~i~~~~~~~-~grViv~~f-asni~Ri~~i~~~a~~~~R~v~i~ 257 (559)
++.++++.+ ++.--|++| ..|++-+..++++|++.+.++.+.
T Consensus 5 ~~k~ll~~A~~~~yAV~AfNv~n~e~~~Avi~AAee~~sPvIlq 48 (285)
T PRK07709 5 SMKEMLNKALEGKYAVGQFNMNNLEWTQAILAAAEEEKSPVILG 48 (285)
T ss_pred CHHHHHHHHHHCCEEEEEEEECCHHHHHHHHHHHHHHCCCEEEE
T ss_conf 68999999998890799978899999999999999978899999
No 294
>pfam00356 LacI Bacterial regulatory proteins, lacI family.
Probab=26.45 E-value=27 Score=13.97 Aligned_cols=15 Identities=13% Similarity=0.310 Sum_probs=8.5
Q ss_pred HHHHHHHHHHCCCCC
Q ss_conf 999999887428767
Q gi|254780869|r 261 LKRVVSVAIDVGIIK 275 (559)
Q Consensus 261 ~~~~~~~a~~~g~l~ 275 (559)
-.++.+++.++||.+
T Consensus 31 r~rI~~~a~~lgY~p 45 (46)
T pfam00356 31 REKVEAAMEELGYVP 45 (46)
T ss_pred HHHHHHHHHHHCCCC
T ss_conf 999999999978999
No 295
>COG4882 Predicted aminopeptidase, Iap family [General function prediction only]
Probab=26.30 E-value=37 Score=13.01 Aligned_cols=46 Identities=20% Similarity=0.338 Sum_probs=27.1
Q ss_pred HHHHCCCCEEEEECHHHHHHHHHHHHHHHHHCC-EEEEECHHHHHHH
Q ss_conf 986279839999414778999999999987188-6998448699999
Q gi|254780869|r 220 IMKNAKGCVLVTTFSSSVSRIRSIIDIAEQIGR-KIVLLGSSLKRVV 265 (559)
Q Consensus 220 ~~~~~~grViv~~fasni~Ri~~i~~~a~~~~R-~v~i~Grs~~~~~ 265 (559)
++.++.||++|+-|.||++-+..++-.|.+.|- -+++.+|.-.|++
T Consensus 84 ~~gD~~Gr~~Va~~pq~vdd~k~~~i~Aae~ga~a~~f~~~~~rriV 130 (486)
T COG4882 84 LEGDAGGRVVVARAPQVVDDLKAAAILAAEAGAEALLFESRDPRRIV 130 (486)
T ss_pred CCCCCCCEEEEEECCCCHHHHHHHHHHHHHCCCEEEEEECCCCEEEE
T ss_conf 25777870786665531778889999998768728998358860588
No 296
>pfam01488 Shikimate_DH Shikimate / quinate 5-dehydrogenase. This family contains both shikimate and quinate dehydrogenases. Shikimate 5-dehydrogenase catalyses the conversion of shikimate to 5-dehydroshikimate. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites 3-dehydroquinate and dehydroshikimate.
Probab=26.14 E-value=37 Score=12.98 Aligned_cols=81 Identities=19% Similarity=0.258 Sum_probs=47.5
Q ss_pred HHHHHHCCC-CE-EEEECHHHHHHHHHHHHHHHHHC-CEEEEECHHHHHHHHHHHHCCCCCCCCCCCCHHHHCC-CCCCC
Q ss_conf 999862798-39-99941477899999999998718-8699844869999998874287677654226566223-88020
Q gi|254780869|r 218 YDIMKNAKG-CV-LVTTFSSSVSRIRSIIDIAEQIG-RKIVLLGSSLKRVVSVAIDVGIIKKDQLFLSDESFGL-YPREQ 293 (559)
Q Consensus 218 ~~~~~~~~g-rV-iv~~fasni~Ri~~i~~~a~~~~-R~v~i~Grs~~~~~~~a~~~g~l~~~~~~i~~~~~~~-~p~~~ 293 (559)
++.|.+-++ ++ ++.+ -.++|. +++...+.| ++|.+.+||..+.-..+.+.|-.. -..++.+++.. +..-+
T Consensus 4 ~~~~~~l~~~~vlVIGa--G~~~~~--~~~~L~~~g~~~i~v~nRt~~ka~~la~~~~~~~--~~~~~~~~l~~~l~~~D 77 (134)
T pfam01488 4 KKIFGDLKGKKVLLIGA--GEMARL--AAKHLLSKGAKKITIANRTLEKAKELAEEFGGEE--VEALPLDELEELLAEAD 77 (134)
T ss_pred HHHHCCCCCCEEEEECC--CHHHHH--HHHHHHHCCCCEEEEECCCHHHHHHHHHHCCCCC--EEEEECHHHHHHHHHCC
T ss_conf 77638814898999996--099999--9999997599889995475789999999849972--58985135441363199
Q ss_pred EEEEEECCCCC
Q ss_conf 89999669632
Q gi|254780869|r 294 LIVIATGSQGE 304 (559)
Q Consensus 294 ~~ii~TGsqge 304 (559)
+++.||++..-
T Consensus 78 ivI~aT~s~~~ 88 (134)
T pfam01488 78 IVISATSAPTP 88 (134)
T ss_pred EEEEECCCCCC
T ss_conf 99992599973
No 297
>PRK09195 gatY tagatose-bisphosphate aldolase; Reviewed
Probab=26.11 E-value=37 Score=12.98 Aligned_cols=42 Identities=14% Similarity=0.416 Sum_probs=33.0
Q ss_pred HHHHHHHHC-CCCEEEEEC-HHHHHHHHHHHHHHHHHCCEEEEE
Q ss_conf 999998627-983999941-477899999999998718869984
Q gi|254780869|r 216 NIYDIMKNA-KGCVLVTTF-SSSVSRIRSIIDIAEQIGRKIVLL 257 (559)
Q Consensus 216 ~i~~~~~~~-~grViv~~f-asni~Ri~~i~~~a~~~~R~v~i~ 257 (559)
++.++++.+ ++.--|++| ..|++-+..++++|++.+.+|.+.
T Consensus 5 ~~k~lL~~A~~~~yAV~AfNv~~~e~~~Avi~AAee~~sPvIlq 48 (284)
T PRK09195 5 STRQMLNNAQRGGYAVPAFNIHNLETMQVVVETAAELHSPVIIA 48 (284)
T ss_pred CHHHHHHHHHHCCEEEEEEEECCHHHHHHHHHHHHHHCCCEEEE
T ss_conf 68999999998790799877788999999999999959998999
No 298
>pfam08885 GSCFA GSCFA family. This family of proteins are functionally uncharacterized. They have been named GSCFA after a highly conserved N-terminal motif in the alignment.
Probab=25.71 E-value=24 Score=14.36 Aligned_cols=22 Identities=23% Similarity=0.374 Sum_probs=10.2
Q ss_pred EECHHHHHHHHHHHHHHHHHCC
Q ss_conf 9414778999999999987188
Q gi|254780869|r 231 TTFSSSVSRIRSIIDIAEQIGR 252 (559)
Q Consensus 231 ~~fasni~Ri~~i~~~a~~~~R 252 (559)
.++..++..+..++++.++.|.
T Consensus 145 ls~~ei~~~l~~~~~~l~~~np 166 (251)
T pfam08885 145 LSVEEIVEDLRAIIALLKAINP 166 (251)
T ss_pred CCHHHHHHHHHHHHHHHHHHCC
T ss_conf 8999999999999999998699
No 299
>PRK05298 excinuclease ABC subunit B; Provisional
Probab=25.70 E-value=38 Score=12.93 Aligned_cols=80 Identities=10% Similarity=0.190 Sum_probs=34.7
Q ss_pred CCCCCHHHHHHHHHHHHHHCCCCEEEEECHHHHHHHHHHHHHHHHHCCEEEEECHHHHHHHHHHHHCCCCCCCCCC---C
Q ss_conf 8777787999999999862798399994147789999999999871886998448699999988742876776542---2
Q gi|254780869|r 205 GTCISEKGIKKNIYDIMKNAKGCVLVTTFSSSVSRIRSIIDIAEQIGRKIVLLGSSLKRVVSVAIDVGIIKKDQLF---L 281 (559)
Q Consensus 205 ~~~~sE~~v~~~i~~~~~~~~grViv~~fasni~Ri~~i~~~a~~~~R~v~i~Grs~~~~~~~a~~~g~l~~~~~~---i 281 (559)
.+..++..+..++.++-++-+.|+- -|- .-.++.+.-++-.++. .=+++.+++||++.-.++ +
T Consensus 249 hyVt~~e~l~~Ai~~I~~EL~eRl~--~f~-~~gKllEAqRL~qRT~-----------yDlEMl~E~GyCsGIENYSRhl 314 (657)
T PRK05298 249 HYVTPRERLERAIESIKEELEERLK--ELE-KEGKLLEAQRLEQRTR-----------YDLEMLRELGYCSGIENYSRHL 314 (657)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHH--HHH-HCCCHHHHHHHHHHHH-----------HHHHHHHHCCCCCCHHHHHHHC
T ss_conf 7689979999999999999999999--999-7677798889999988-----------7999999828775601215650
Q ss_pred CH--------HHHCCCCCCCEEEEE
Q ss_conf 65--------662238802089999
Q gi|254780869|r 282 SD--------ESFGLYPREQLIVIA 298 (559)
Q Consensus 282 ~~--------~~~~~~p~~~~~ii~ 298 (559)
+. .-+.-.|++-+++|-
T Consensus 315 ~gR~pGe~P~tLlDYfp~DfLl~iD 339 (657)
T PRK05298 315 SGRAPGEPPPTLLDYFPDDFLLFID 339 (657)
T ss_pred CCCCCCCCCCHHHHHCCCCEEEEEC
T ss_conf 6999887894488757756599983
No 300
>pfam03544 TonB Gram-negative bacterial tonB protein.
Probab=25.53 E-value=38 Score=12.91 Aligned_cols=27 Identities=19% Similarity=0.314 Sum_probs=20.9
Q ss_pred HHHHHCCEEEEEEEECCCCCEEECCEEE
Q ss_conf 9740387499999983899880053799
Q gi|254780869|r 459 RQLSFVGHLSVNVLLDNHYNIFGVPEIV 486 (559)
Q Consensus 459 ~~Ls~~GiV~V~viid~~~~l~~~P~I~ 486 (559)
++...+|.|.+.+.+|.+|++.. ..|.
T Consensus 10 ~~~~~~G~v~v~~~I~~~G~v~~-~~v~ 36 (79)
T pfam03544 10 RRRGIEGTVTVRFTIDPDGSVKD-VKVV 36 (79)
T ss_pred HHCCCEEEEEEEEEEECCCCEEE-EEEE
T ss_conf 97799269999999979999999-9999
No 301
>TIGR02545 ATP_syn_fliI flagellar protein export ATPase FliI; InterPro: IPR013379 FliI proteins are involved in bacterial flagellum systems, acting to drive protein export for flagellar biosynthesis. The most closely related proteins are the YscN proteins of bacterial type III secretion systems.; GO: 0016887 ATPase activity, 0001539 ciliary or flagellar motility, 0009296 flagellum biogenesis, 0009288 flagellin-based flagellum.
Probab=25.53 E-value=38 Score=12.91 Aligned_cols=106 Identities=22% Similarity=0.334 Sum_probs=74.6
Q ss_pred EEEEC-CCEE-EECCCCEECCCCCCCCCCCHHHHHHC--CCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHC---
Q ss_conf 79876-8179-98334024677665423898899860--87882999963564578887777879999999998627---
Q gi|254780869|r 152 VIRSP-VGNI-VHTGDWKLDDDAILGDVTDKDSLCAI--GNEGILALMCDSTNAMREGTCISEKGIKKNIYDIMKNA--- 224 (559)
Q Consensus 152 ~I~t~-~g~i-~ytGDfk~d~~p~~g~~~d~~~l~~~--~~~gv~~Li~esT~~~~~~~~~sE~~v~~~i~~~~~~~--- 224 (559)
++.+. +.|+ +|.|= -.|+-|-+-.+++. ++-.|-|||.| +. .||.|.+++.+-..
T Consensus 152 lLT~GrGQR~GIFAGS-------GVGKSTLLGMiAr~t~ADV~VIALIGE--------RG---REV~EFiE~~LG~eGl~ 213 (439)
T TIGR02545 152 LLTIGRGQRLGIFAGS-------GVGKSTLLGMIARYTEADVNVIALIGE--------RG---REVKEFIEDDLGEEGLK 213 (439)
T ss_pred CCCCCCCCEEEEECCC-------CHHHHHHHHHHHCCCCCCEEEEEEECC--------CC---CCCHHHHHHHCCCCCCC
T ss_conf 0365564102663377-------444788988875066588789984446--------56---64313554303511025
Q ss_pred CCCEEEEECH-HHHHHHHHHH------HHHHHHCCEEEEECHHHHHHHHHHHHCCCCC
Q ss_conf 9839999414-7789999999------9998718869984486999999887428767
Q gi|254780869|r 225 KGCVLVTTFS-SSVSRIRSII------DIAEQIGRKIVLLGSSLKRVVSVAIDVGIIK 275 (559)
Q Consensus 225 ~grViv~~fa-sni~Ri~~i~------~~a~~~~R~v~i~Grs~~~~~~~a~~~g~l~ 275 (559)
+.=|||+|.+ |=+-|++-.+ +-=+..|+.|.++==|+-|.-.+.++.|..-
T Consensus 214 kSVVVVATSD~spl~R~~aA~~A~~iAEYFRDqGk~VLL~~DSlTRFAmAqREigLa~ 271 (439)
T TIGR02545 214 KSVVVVATSDESPLMRIRAAYAATAIAEYFRDQGKDVLLLMDSLTRFAMAQREIGLAA 271 (439)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEECHHHHHHHHHHHHHHHC
T ss_conf 4079982799868999888899999999998649834776211788998988999871
No 302
>TIGR00075 hypD hydrogenase expression/formation protein HypD; InterPro: IPR002780 HypD is involved in the hyp operon which is needed for the activity of the three hydrogenase isoenzymes in Escherichia coli. HypD is one of the genes needed for formation of these enzymes . This protein has been found in Gram-negative and Gram-positive bacteria and Archaea. HypD contains many possible metal binding residues, which may bind to nickel. Transposon Tn5 insertions into HypD resulted in Rhizobium leguminosarum mutants that lacked any hydrogenase activity in symbiosis with peas .; GO: 0046872 metal ion binding.
Probab=25.50 E-value=38 Score=12.91 Aligned_cols=23 Identities=26% Similarity=0.345 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHH-CCEEEEECH
Q ss_conf 89999999999871-886998448
Q gi|254780869|r 237 VSRIRSIIDIAEQI-GRKIVLLGS 259 (559)
Q Consensus 237 i~Ri~~i~~~a~~~-~R~v~i~Gr 259 (559)
++.+...+++|++. +|+||+.|=
T Consensus 129 VYS~~dal~iA~~~Pdr~VVf~ai 152 (384)
T TIGR00075 129 VYSPMDALKIAKENPDRKVVFFAI 152 (384)
T ss_pred EECHHHHHHHHHHCCCCCEEEEEE
T ss_conf 808789999998687994799961
No 303
>TIGR00031 UDP-GALP_mutase UDP-galactopyranose mutase; InterPro: IPR004379 UDP-galactopyranose mutase (5.4.99.9 from EC) is involved in the conversion of UDP-GALP into UDP-GALF through a 2-keto intermediate, and contains FAD as a cofactor. The gene is known as glf, ceoA, and rfbD. It is known experimentally in Escherichia coli, Mycobacterium tuberculosis, and Klebsiella pneumoniae.; GO: 0008767 UDP-galactopyranose mutase activity, 0009103 lipopolysaccharide biosynthetic process.
Probab=25.49 E-value=35 Score=13.16 Aligned_cols=22 Identities=23% Similarity=0.371 Sum_probs=11.3
Q ss_pred CCCCCEEEEEEECCCCCC-EEEEEECC
Q ss_conf 834660699995177786-48999776
Q gi|254780869|r 15 GEIGMNMALYGYGSPSSR-KWIMIDCG 40 (559)
Q Consensus 15 ~eiG~N~~~~~~~~~~~~-~~iiiD~G 40 (559)
+.||+|| |..-+++ .+++==.|
T Consensus 35 ~hiGGNc----Yd~~D~~Tgil~H~YG 57 (390)
T TIGR00031 35 NHIGGNC----YDEVDENTGILFHQYG 57 (390)
T ss_pred CCCCCCC----CCCCCCCCCEEEEECC
T ss_conf 6658734----4422488743677418
No 304
>cd04183 GT2_BcE_like GT2_BcbE_like is likely involved in the biosynthesis of the polysaccharide capsule. GT2_BcbE_like: The bcbE gene is one of the genes in the capsule biosynthetic locus of Pasteurella multocida. Its deducted product is likely involved in the biosynthesis of the polysaccharide capsule, which is found on surface of a wide range of bacteria. It is a subfamily of Glycosyltransferase Family GT2, which includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds.
Probab=25.36 E-value=38 Score=12.89 Aligned_cols=45 Identities=11% Similarity=0.054 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHCCCEEEEECCCCCCEECCCCCCHHHHHHHHHHCCCCE
Q ss_conf 17789999976510311343035666413157889789999997549539
Q gi|254780869|r 338 NEVAIGHIKNRLVEQGVRVIAEDAECPVHVSGHPYPNDLKRMYQWIRPQV 387 (559)
Q Consensus 338 nE~~~~~~~n~l~~~g~~vi~~~~~~~iH~SGHa~~edl~~li~~ikPk~ 387 (559)
+...+.++++.+...|.+-+.. +-...|-....+........|..
T Consensus 28 gkp~i~~~i~~l~~~~~~~~i~-----v~~~~~~~~~~~~~~~~~~~~~~ 72 (231)
T cd04183 28 GKPMIEWVIESLAKIFDSRFIF-----ICRDEHNTKFHLDESLKLLAPNA 72 (231)
T ss_pred CEEHHHHHHHHHHHCCCCEEEE-----ECCHHHHHHHHHHHHHCCCCCCC
T ss_conf 9578999999998649924686-----14546666788877751558971
No 305
>TIGR01283 nifE nitrogenase MoFe cofactor biosynthesis protein NifE; InterPro: IPR005973 The enzyme responsible for nitrogen fixation, the nitrogenase, shows a high degree of conservation of structure, function, and amino acid sequence across wide phylogenetic ranges. All known Mo-nitrogenases consist of two components, component I (also called dinitrogenase, or Fe-Mo protein), an alpha2beta2 tetramer encoded by the nifD and nifK genes, and component II (dinitrogenase reductase, or Fe protein) a homodimer encoded by the nifH gene. Two operons, nifDK and nifEN, encode a tetrameric (alpha2beta2 and N2E2) enzymatic complex. Nitrogenase contains two unusual rare metal clusters; one of them is the iron molybdenum cofactor (FeMo-co), which is considered to be the site of dinitrogen reduction and whose biosynthesis requires the products of nifNE and of some other nif genes. It has been proposed that NifNE might serve as a scaffold upon which FeMo-co is built and then inserted into component I. ; GO: 0005515 protein binding, 0006461 protein complex assembly, 0009399 nitrogen fixation.
Probab=24.92 E-value=39 Score=12.83 Aligned_cols=52 Identities=19% Similarity=0.380 Sum_probs=26.5
Q ss_pred CCEEEEEEECCCCHHHHHHHHHHHHHCCCEEEEECCCCCCEECCCCCCHHHHHHHHHHCCCCEEE
Q ss_conf 96699996158861778999997651031134303566641315788978999999754953999
Q gi|254780869|r 325 KDTVIFSSRAIPGNEVAIGHIKNRLVEQGVRVIAEDAECPVHVSGHPYPNDLKRMYQWIRPQVLV 389 (559)
Q Consensus 325 ~D~vI~ss~~ipGnE~~~~~~~n~l~~~g~~vi~~~~~~~iH~SGHa~~edl~~li~~ikPk~~I 389 (559)
|-.||+++.- -|+|.-.+++.. +...+..++- + |+.-+|..++.--+|..+|
T Consensus 361 GMeVV~~GTq-kg~~EDy~~I~e-~~~~~~~m~D-d----------~~p~~L~~~~~~~~ADlli 412 (470)
T TIGR01283 361 GMEVVATGTQ-KGTEEDYERIRE-LMGEGTVMLD-D----------ANPRELLKLLLEYKADLLI 412 (470)
T ss_pred CCEEEEEEEC-CCCHHHHHHHHH-HHCCCCEEEE-C----------CCHHHHHHHHHHHCCCEEE
T ss_conf 9179998300-798889999999-7079967862-5----------8878999999872898898
No 306
>COG2828 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=24.80 E-value=39 Score=12.82 Aligned_cols=42 Identities=21% Similarity=0.259 Sum_probs=26.4
Q ss_pred EEEEEEECCCCCCCCCEEEEEECCCEEEECCCCEECCCCCCCCC
Q ss_conf 89999855677776535679876817998334024677665423
Q gi|254780869|r 134 FSIESVRVNHSIPETMALVIRSPVGNIVHTGDWKLDDDAILGDV 177 (559)
Q Consensus 134 ~~v~~~~~~Hsip~a~~~~I~t~~g~i~ytGDfk~d~~p~~g~~ 177 (559)
..|.-+.++-| -..--.+.+++|.+.|+|||.+|--|..+-+
T Consensus 119 t~VRI~~~Nt~--k~I~A~Vp~~nG~V~y~Gd~~idGVp~~aAp 160 (378)
T COG2828 119 TAVRIWNVNTG--KTIEAHVPTPNGQVQYTGDAEIDGVPGPAAP 160 (378)
T ss_pred EEEEEEECCCC--CEEEEEEECCCCCEEECCCEEECCCCCCCCC
T ss_conf 69999962676--1599984158982776365476267788872
No 307
>pfam06057 VirJ Bacterial virulence protein (VirJ). This family consists of several bacterial VirJ virulence proteins. VirJ is thought to be involved in the type IV secretion system. It is thought that the substrate proteins localized to the periplasm may associate with the pilus in a manner that is mediated by VirJ, and suggest a two-step process for type IV secretion in Agrobacterium.
Probab=24.76 E-value=39 Score=12.81 Aligned_cols=67 Identities=19% Similarity=0.227 Sum_probs=38.8
Q ss_pred CEEEECCCCEECCCCCCCCC-CCHHHHHHCCCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHH----H-CCCCEEEE
Q ss_conf 17998334024677665423-898899860878829999635645788877778799999999986----2-79839999
Q gi|254780869|r 158 GNIVHTGDWKLDDDAILGDV-TDKDSLCAIGNEGILALMCDSTNAMREGTCISEKGIKKNIYDIMK----N-AKGCVLVT 231 (559)
Q Consensus 158 g~i~ytGDfk~d~~p~~g~~-~d~~~l~~~~~~gv~~Li~esT~~~~~~~~~sE~~v~~~i~~~~~----~-~~grViv~ 231 (559)
-.|+|||| .|.. .|..-=..+.++||-+.=.||..-+...++|.| +...+.+++. . ...+|++.
T Consensus 4 lav~~SGD--------GGW~~lD~~va~~L~~~GvpVvGvdSLrYFW~~ktP~q--~a~Dl~~ii~~Y~~~w~~~~v~Li 73 (192)
T pfam06057 4 VAVFYSGD--------GGWRDLDKEVGSALQKQGVPVVGVDSLRYFWSERTPEE--VADDLDRIIDTYRKRWKVKNVVLI 73 (192)
T ss_pred EEEEEECC--------CCHHHHHHHHHHHHHHCCCCEEEECHHHHHHCCCCHHH--HHHHHHHHHHHHHHHHCCCEEEEE
T ss_conf 99999468--------87355519999999977983655326888756599899--999999999999998589659999
Q ss_pred ECH
Q ss_conf 414
Q gi|254780869|r 232 TFS 234 (559)
Q Consensus 232 ~fa 234 (559)
=||
T Consensus 74 GYS 76 (192)
T pfam06057 74 GYS 76 (192)
T ss_pred EEC
T ss_conf 617
No 308
>PRK08960 hypothetical protein; Provisional
Probab=24.70 E-value=39 Score=12.80 Aligned_cols=20 Identities=10% Similarity=0.250 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHCCEEEE
Q ss_conf 89999999999871886998
Q gi|254780869|r 237 VSRIRSIIDIAEQIGRKIVL 256 (559)
Q Consensus 237 i~Ri~~i~~~a~~~~R~v~i 256 (559)
-++++.++++|++.+--|+.
T Consensus 184 ~~~l~~l~~~a~~~~~~vI~ 203 (387)
T PRK08960 184 RDELAALSQALKARGGHLVV 203 (387)
T ss_pred HHHHHHHHHHHHHCCCEEEE
T ss_conf 89999999987623977998
No 309
>TIGR01553 formate-DH-alph formate dehydrogenase, alpha subunit; InterPro: IPR006443 This family of sequences describe a subset of formate dehydrogenase alpha chains found mainly in proteobacteria but also in Aquifex aeolicus. The alpha chain contains domains for molybdopterin dinucleotide binding and molybdopterin oxidoreductase. The holo-enzyme also contains beta and gamma subunits of 32 and 20 kDa. The enzyme catalyzes the oxidation of formate (produced from pyruvate during anaerobic growth) to carbon dioxide with the concomitant release of two electrons and two protons. The electrons are utilised mainly in the nitrate respiration by nitrate reductase . In Escherichia coli and Salmonella typhi, there are two forms of the formate dehydrogenase, one induced by nitrate which is strictly anaerobic (fdn), and one incuced during the transition from aerobic to anaerobic growth (fdo). This subunit is one of only three proteins in Escherichia coli which contain selenocysteine .; GO: 0008863 formate dehydrogenase activity, 0045333 cellular respiration, 0005737 cytoplasm.
Probab=24.69 E-value=39 Score=12.80 Aligned_cols=59 Identities=25% Similarity=0.379 Sum_probs=34.7
Q ss_pred HHHHHCCCCEEEEECCCHHHHHHHHHHHHHCCCCCEEEECCCEEEEECCCCEEEEEE-EEC---CCEEECCCCEECCC
Q ss_conf 999754953999704577999999987874478631550032278973897045012-321---32021233100255
Q gi|254780869|r 378 RMYQWIRPQVLVAIHGEPLHLVAHKELALQEGIACVPPVRNGKMLRLFPDPIEIIDE-VVH---GLFLKDGFLIGKFA 451 (559)
Q Consensus 378 ~li~~ikPk~~IPvHGe~rhl~~h~~la~~~gv~~i~l~~NGd~i~l~~~~~~i~~~-v~~---g~~~vDG~~i~~~~ 451 (559)
-+.-...|+.||=| -=+||.+.| ++|||+|.+..-+.++.-. +.| ..+-|+|..|.-++
T Consensus 935 ~~~~~a~P~~F~Ei---------~EeLA~ekG------I~nGD~V~~~s~Rg~i~A~A~vTKRiKpl~i~G~~Vh~iG 997 (1043)
T TIGR01553 935 ALLLLAEPQMFVEI---------SEELAKEKG------IQNGDLVKVESVRGKIKAVAVVTKRIKPLKIDGKVVHTIG 997 (1043)
T ss_pred HHHHHHCCCCEEEC---------CHHHHHHCC------CCCCCEEEEEECCEEEEEEEEEEECCCCCEECCEEEEEEE
T ss_conf 13566387225763---------358885448------6547868997225148999997304675132682799982
No 310
>cd00453 FTBP_aldolase_II Fructose/tagarose-bisphosphate aldolase class II. This family includes fructose-1,6-bisphosphate (FBP) and tagarose 1,6-bisphosphate (TBP) aldolases. FBP-aldolase is homodimeric and used in gluconeogenesis and glycolysis; the enzyme controls the condensation of dihydroxyacetone phosphate with glyceraldehyde-3-phosphate to yield fructose-1,6-bisphosphate. TBP-aldolase is tetrameric and produces tagarose-1,6-bisphosphate. There is an absolute requirement for a divalent metal ion, usually zinc, and in addition the enzymes are activated by monovalent cations such as Na+. Although structurally similar, the class I aldolases use a different mechanism and are believed to have an independent evolutionary origin.
Probab=24.65 E-value=39 Score=12.80 Aligned_cols=40 Identities=8% Similarity=0.258 Sum_probs=31.1
Q ss_pred HHHHHHC-CCCEEEEEC-HHHHHHHHHHHHHHHHHCCEEEEE
Q ss_conf 9998627-983999941-477899999999998718869984
Q gi|254780869|r 218 YDIMKNA-KGCVLVTTF-SSSVSRIRSIIDIAEQIGRKIVLL 257 (559)
Q Consensus 218 ~~~~~~~-~grViv~~f-asni~Ri~~i~~~a~~~~R~v~i~ 257 (559)
.++++.+ ++.--|++| ..|++-++.++++|++.+-+|.+-
T Consensus 2 kemL~~A~~~~YAV~AfNv~n~E~~~AvleAAee~~SPVIlq 43 (340)
T cd00453 2 QKVFQVAKENNFALPAVNCVGTDSINAVLETAAKVKAPVIVQ 43 (340)
T ss_pred HHHHHHHHHCCCEEEEEEECCHHHHHHHHHHHHHHCCCEEEE
T ss_conf 789999998598798876798999999999999969998998
No 311
>PRK00011 glyA serine hydroxymethyltransferase; Reviewed
Probab=24.38 E-value=40 Score=12.76 Aligned_cols=69 Identities=13% Similarity=0.174 Sum_probs=31.9
Q ss_pred HHHHHHCCEEEEE--EEECCC------CCEEECCEEEEECCEECCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHH
Q ss_conf 9974038749999--998389------98800537999401212566588999999999999985220036898999999
Q gi|254780869|r 458 RRQLSFVGHLSVN--VLLDNH------YNIFGVPEIVDIGIPAYDGDGGKIHKLLLKTVITTVVDLPQFRRKDLKLLRES 529 (559)
Q Consensus 458 R~~Ls~~GiV~V~--viid~~------~~l~~~P~I~~~Gl~~~~~~~~~l~~~i~~~i~~~i~~~~~~~~~d~~~lk~~ 529 (559)
-+.|...|+++=- +..|.+ |==++.|.+++||+- +++...+ .+.+.+.+... ++....+.
T Consensus 330 ~~~Le~~gI~vNkn~iP~d~~~~~~~SGiRiGt~a~TtrG~~--e~em~~i----a~~I~~~l~~~------~d~~~~~~ 397 (415)
T PRK00011 330 EAALEEANITVNKNAIPFDPRSPFVTSGIRIGTPAITTRGFK--EAEMEEI----AELIADVLDNP------EDEAVLEE 397 (415)
T ss_pred HHHHHHCCEEECCCCCCCCCCCCCCCCCEEECCHHHHHCCCC--HHHHHHH----HHHHHHHHHCC------CCHHHHHH
T ss_conf 999998590875587989999988886014367889748998--8999999----99999998378------98899999
Q ss_pred HHHHHHHHH
Q ss_conf 999999999
Q gi|254780869|r 530 ISSALRSLL 538 (559)
Q Consensus 530 ir~~irk~~ 538 (559)
+|..|..++
T Consensus 398 ir~eV~~L~ 406 (415)
T PRK00011 398 VKEEVKELC 406 (415)
T ss_pred HHHHHHHHH
T ss_conf 999999999
No 312
>pfam10740 DUF2529 Protein of unknown function (DUF2529). This family is conserved in the Bacillales. The function is not known. Several members are annotated as being YWJG, a protein expressed downstream of pyrG, a gene encoding for cytidine triphosphate synthetase.
Probab=24.35 E-value=40 Score=12.76 Aligned_cols=35 Identities=29% Similarity=0.499 Sum_probs=18.5
Q ss_pred CCCCCCEEEEEEECCCCHHHHHHHHHHHHHCCCEEEE
Q ss_conf 0268966999961588617789999976510311343
Q gi|254780869|r 321 KLAEKDTVIFSSRAIPGNEVAIGHIKNRLVEQGVRVI 357 (559)
Q Consensus 321 ~l~~~D~vI~ss~~ipGnE~~~~~~~n~l~~~g~~vi 357 (559)
.+.+.|.|.+-|+- -|+..+.++..+|..+|+.++
T Consensus 78 ~~t~tDRVLlfs~~--~~d~e~~~~a~~L~~~gi~~v 112 (172)
T pfam10740 78 DITETDRVLLFSRF--SNDEEAVALAKKLYDQGIDVV 112 (172)
T ss_pred CCCCCCEEEEECCC--CCCHHHHHHHHHHHHCCCCEE
T ss_conf 07755769997699--997899999999998699889
No 313
>PRK12857 putative aldolase; Reviewed
Probab=24.22 E-value=40 Score=12.74 Aligned_cols=159 Identities=18% Similarity=0.256 Sum_probs=74.6
Q ss_pred HHHHHHHHC-CCCEEEEEC-HHHHHHHHHHHHHHHHHCCEEEEECH-HHHHHHHHHHHCCCCCCCCCCCCHHHHCCCCCC
Q ss_conf 999998627-983999941-47789999999999871886998448-699999988742876776542265662238802
Q gi|254780869|r 216 NIYDIMKNA-KGCVLVTTF-SSSVSRIRSIIDIAEQIGRKIVLLGS-SLKRVVSVAIDVGIIKKDQLFLSDESFGLYPRE 292 (559)
Q Consensus 216 ~i~~~~~~~-~grViv~~f-asni~Ri~~i~~~a~~~~R~v~i~Gr-s~~~~~~~a~~~g~l~~~~~~i~~~~~~~~p~~ 292 (559)
++.+++..+ ++.--|++| ..|++-+..++++|++.+.++.+.-- ...++ .|+-..-+.....-+....|
T Consensus 5 ~~k~lL~~A~~~~yAV~AfNv~n~e~~~avi~AAee~~sPvIlq~s~~~~~~------~g~~~~~~~~~~~a~~~~Vp-- 76 (284)
T PRK12857 5 TVAELLEKAEKGGYAVGAFNCNNMEIVQAIVAAAEAERSPVIIQASQGAIKY------AGIEYISAMVRTAAEKASVP-- 76 (284)
T ss_pred CHHHHHHHHHHCCCEEEEEEECCHHHHHHHHHHHHHHCCCEEEECCCCHHHH------CCHHHHHHHHHHHHHHCCCC--
T ss_conf 6999999999889179987889899999999999997899899917147765------79999999999999976998--
Q ss_pred CEEEEEECCCCCHHHHHHHHCCCCCCCCCCCCC-CEEEEEEECCCCHHHHHHHHH---HHHHCCCEEEEE-----CCCCC
Q ss_conf 089999669632688988520277765302689-669999615886177899999---765103113430-----35666
Q gi|254780869|r 293 QLIVIATGSQGEPRSALAQLSRGEMRNVKLAEK-DTVIFSSRAIPGNEVAIGHIK---NRLVEQGVRVIA-----EDAEC 363 (559)
Q Consensus 293 ~~~ii~TGsqge~~a~l~ria~~~~~~i~l~~~-D~vI~ss~~ipGnE~~~~~~~---n~l~~~g~~vi~-----~~~~~ 363 (559)
+.+ .=..|..+....+. ++.| +.|.|-.+.-| .|..+..+. ..-...|+.|=- .+.+.
T Consensus 77 --V~l-HLDH~~~~e~i~~a---------i~~Gf~SVM~DgS~l~-~eeNi~~Tk~vv~~ah~~gv~VEaElG~igg~ed 143 (284)
T PRK12857 77 --VAL-HLDHGTDFEQVMKC---------IRNGFTSVMIDGSKLP-LEENIALTKKVVEIAHAVGVSVEAELGKIGGTED 143 (284)
T ss_pred --EEE-ECCCCCCHHHHHHH---------HHCCCCEEEEECCCCC-HHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCC
T ss_conf --999-67988999999999---------9809987997289899-9999999999999998708915885301367677
Q ss_pred CEECC----CCCCHHHHHHHHHHCCCCEEEE----ECCCH
Q ss_conf 41315----7889789999997549539997----04577
Q gi|254780869|r 364 PVHVS----GHPYPNDLKRMYQWIRPQVLVA----IHGEP 395 (559)
Q Consensus 364 ~iH~S----GHa~~edl~~li~~ikPk~~IP----vHGe~ 395 (559)
.++.+ --.+.+|-+++++......+-+ +||.|
T Consensus 144 ~~~~~~~~~~~T~peea~~Fv~~TgvD~LAvaiGn~HG~y 183 (284)
T PRK12857 144 DITVDEREAFFTDPEEARRFVEETGVDALAIAIGTAHGPY 183 (284)
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHCCCEEEHHHCCCCCCC
T ss_conf 7776630002589999999999879787701205666776
No 314
>KOG0688 consensus
Probab=24.13 E-value=40 Score=12.73 Aligned_cols=129 Identities=16% Similarity=0.207 Sum_probs=58.1
Q ss_pred EEC-CCEEEECCCCEECCCCCCCCCCCHHHHHHCCCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHCC-------
Q ss_conf 876-817998334024677665423898899860878829999635645788877778799999999986279-------
Q gi|254780869|r 154 RSP-VGNIVHTGDWKLDDDAILGDVTDKDSLCAIGNEGILALMCDSTNAMREGTCISEKGIKKNIYDIMKNAK------- 225 (559)
Q Consensus 154 ~t~-~g~i~ytGDfk~d~~p~~g~~~d~~~l~~~~~~gv~~Li~esT~~~~~~~~~sE~~v~~~i~~~~~~~~------- 225 (559)
+.| .|.++|||...-++..-.--..|++-++-+ ++-+-+||.- .++ +.+.+++.+-.
T Consensus 83 kvPpnglvly~gti~tedgkekkv~idfepfkpi---ntslyLcdNk-----fht-------e~l~~Ll~sd~kfgfivm 147 (431)
T KOG0688 83 KVPPNGLVLYTGTIVTEDGKEKKVNIDFEPFKPI---NTSLYLCDNK-----FHT-------EALKELLESDNKFGFIVM 147 (431)
T ss_pred CCCCCCEEEEEEEEECCCCCEEEEECCCCCCCCC---CCCEEECCCC-----CCH-------HHHHHHHHCCCCCCEEEE
T ss_conf 3899833898500572488411220045445663---2224750783-----433-------789999850054627997
Q ss_pred --CCEEEEECHHHHHHHHHH--HHHHHHHCCEEEEECHHHHHH--HHHHHHCCCCCCCCCCCCHHHHCCCCCCCEEEEEE
Q ss_conf --839999414778999999--999987188699844869999--99887428767765422656622388020899996
Q gi|254780869|r 226 --GCVLVTTFSSSVSRIRSI--IDIAEQIGRKIVLLGSSLKRV--VSVAIDVGIIKKDQLFLSDESFGLYPREQLIVIAT 299 (559)
Q Consensus 226 --grViv~~fasni~Ri~~i--~~~a~~~~R~v~i~Grs~~~~--~~~a~~~g~l~~~~~~i~~~~~~~~p~~~~~ii~T 299 (559)
..++.++++-|.--+..- ++.-++.|| -|.|..|. +...++-+|......+-....+.+-..+-..+|..
T Consensus 148 Dg~~tlfgtl~gntrevLhkftVdlPkkhgr----ggqSalrfarlR~ekRhnYVrkvae~a~q~fi~~~~~Nv~gLila 223 (431)
T KOG0688 148 DGNGTLFGTLQGNTREVLHKFTVDLPKKHGR----GGQSALRFARLRMEKRHNYVRKVAELAVQRFITNDKPNVAGLILA 223 (431)
T ss_pred CCCCEEEEEECCCHHHHHHEEEECCCCCCCC----CCHHHHHHHHHHHHHHCCCEEEECCCCEEEEECCCCCCEEEEEEE
T ss_conf 6985058873663670411046317300276----643477664555666434143300011168741787651478972
Q ss_pred CC
Q ss_conf 69
Q gi|254780869|r 300 GS 301 (559)
Q Consensus 300 Gs 301 (559)
||
T Consensus 224 Gs 225 (431)
T KOG0688 224 GS 225 (431)
T ss_pred CC
T ss_conf 45
No 315
>TIGR01369 CPSaseII_lrg carbamoyl-phosphate synthase, large subunit; InterPro: IPR006275 Carbamoyl phosphate synthase (CPSase) is a heterodimeric enzyme composed of a small and a large subunit (with the exception of CPSase III, see below). CPSase catalyses the synthesis of carbamoyl phosphate from biocarbonate, ATP and glutamine (6.3.5.5 from EC) or ammonia (6.3.4.16 from EC), and represents the first committed step in pyrimidine and arginine biosynthesis in prokaryotes and eukaryotes, and in the urea cycle in most terrestrial vertebrates , . CPSase has three active sites, one in the small subunit and two in the large subunit. The small subunit contains the glutamine binding site and catalyses the hydrolysis of glutamine to glutamate and ammonia. The large subunit has two homologous carboxy phosphate domains, both of which have ATP-binding sites; however, the N-terminal carboxy phosphate domain catalyses the phosphorylation of biocarbonate, while the C-terminal domain catalyses the phosphorylation of the carbamate intermediate . The carboxy phosphate domain found duplicated in the large subunit of CPSase is also present as a single copy in the biotin-dependent enzymes acetyl-CoA carboxylase (6.4.1.2 from EC) (ACC), propionyl-CoA carboxylase (6.4.1.3 from EC) (PCCase), pyruvate carboxylase (6.4.1.1 from EC) (PC) and urea carboxylase (6.3.4.6 from EC). Most prokaryotes carry one form of CPSase that participates in both arginine and pyrimidine biosynthesis, however certain bacteria can have separate forms. The large subunit in bacterial CPSase has four structural domains: the carboxy phosphate domain 1, the oligomerisation domain, the carbamoyl phosphate domain 2 and the allosteric domain . CPSase heterodimers from Escherichia coli contain two molecular tunnels: an ammonia tunnel and a carbamate tunnel. These inter-domain tunnels connect the three distinct active sites, and function as conduits for the transport of unstable reaction intermediates (ammonia and carbamate) between successive active sites . The catalytic mechanism of CPSase involves the diffusion of carbamate through the interior of the enzyme from the site of synthesis within the N-terminal domain of the large subunit to the site of phosphorylation within the C-terminal domain. Eukaryotes have two distinct forms of CPSase: a mitochondrial enzyme (CPSase I) that participates in both arginine biosynthesis and the urea cycle; and a cytosolic enzyme (CPSase II) involved in pyrimidine biosynthesis. CPSase II occurs as part of a multi-enzyme complex along with aspartate transcarbamoylase and dihydroorotase; this complex is referred to as the CAD protein . The hepatic expression of CPSase is transcriptionally regulated by glucocorticoids and/or cAMP . There is a third form of the enzyme, CPSase III, found in fish, which uses glutamine as a nitrogen source instead of ammonia . CPSase III is closely related to CPSase I, and is composed of a single polypeptide that may have arisen from gene fusion of the glutaminase and synthetase domains . This entry represents glutamine-dependent CPSase (6.3.5.5 from EC) from prokaryotes and eukaryotes (CPSase II). ; GO: 0004086 carbamoyl-phosphate synthase activity, 0006807 nitrogen compound metabolic process.
Probab=24.08 E-value=40 Score=12.72 Aligned_cols=94 Identities=12% Similarity=0.095 Sum_probs=47.9
Q ss_pred HHHHHHHHHHHHCCCC---C-EEEECC-CEEEEECCC------CE--EEEEEEECCCEEEC---CCCEECCCC-HHHHHH
Q ss_conf 9999999878744786---3-155003-227897389------70--45012321320212---331002550-588999
Q gi|254780869|r 396 LHLVAHKELALQEGIA---C-VPPVRN-GKMLRLFPD------PI--EIIDEVVHGLFLKD---GFLIGKFAD-LGIAKR 458 (559)
Q Consensus 396 rhl~~h~~la~~~gv~---~-i~l~~N-Gd~i~l~~~------~~--~i~~~v~~g~~~vD---G~~i~~~~~-~vl~eR 458 (559)
|.-..-.++|++.+|. | -|++.| |++-.|.=+ -| .++-.||-=++.+. |..+-+.+. --+..|
T Consensus 823 ~i~~~~~~iA~~L~v~Gl~NiQf~~~~E~~~yVIE~NpRASRtVPFvSKa~Gipl~~~A~~~~~G~~l~~~~~~~gv~~~ 902 (1089)
T TIGR01369 823 RIKDIVRKIAKELNVKGLFNIQFVVKDEGEVYVIEVNPRASRTVPFVSKATGIPLAKLAVRVMLGKKLEELGKDLGVGKE 902 (1089)
T ss_pred HHHHHHHHHHHHCCCCCCEEEEEEEECCCCEEEEEECCCCCCCCCCEEEECCCCHHHHHHHHHHCCCCHHCCCCCCCCCC
T ss_conf 99999999998706607222455561699679999717420665413210378879999999708820102754011232
Q ss_pred HHHHHCCEEEEEEEECC-CC-CEEECCEEEEEC
Q ss_conf 97403874999999838-99-880053799940
Q gi|254780869|r 459 RQLSFVGHLSVNVLLDN-HY-NIFGVPEIVDIG 489 (559)
Q Consensus 459 ~~Ls~~GiV~V~viid~-~~-~l~~~P~I~~~G 489 (559)
..+-.-++=...+.+++ .+ +++=.|+--|+|
T Consensus 903 ~~~~~vavK~~vFSF~kL~g~Dp~LGpEMkSTG 935 (1089)
T TIGR01369 903 KESKYVAVKVPVFSFSKLAGVDPVLGPEMKSTG 935 (1089)
T ss_pred CCCCEEEEEEEECCCHHHCCCCEEECCCCCCCC
T ss_conf 688727996423771221488711177555132
No 316
>PRK05166 histidinol-phosphate aminotransferase; Provisional
Probab=23.96 E-value=40 Score=12.71 Aligned_cols=60 Identities=15% Similarity=0.134 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHHCCCCEEEEECHHHHHHHHHHHHHHHHHCCEEEEECHHHHHHHHHHHHCC
Q ss_conf 79999999998627983999941477899999999998718869984486999999887428
Q gi|254780869|r 211 KGIKKNIYDIMKNAKGCVLVTTFSSSVSRIRSIIDIAEQIGRKIVLLGSSLKRVVSVAIDVG 272 (559)
Q Consensus 211 ~~v~~~i~~~~~~~~grViv~~fasni~Ri~~i~~~a~~~~R~v~i~Grs~~~~~~~a~~~g 272 (559)
.++.+.+.+...=....|++++=|+ +=+..++++...-|.+|++..-++-.+-..++-.|
T Consensus 76 ~~Lr~aiA~~~gv~~~~I~v~nGs~--e~i~~~~~a~~~pGd~Vl~~~Ptf~~Y~~~~~~~G 135 (374)
T PRK05166 76 RALRAEIAASFGVPTDQIILGNGSE--DLIAVICRAVLRPGDRVVTLYPSFPLHEDYPTLMG 135 (374)
T ss_pred HHHHHHHHHHHCCCHHHEEECCCHH--HHHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHC
T ss_conf 9999999999683830199856899--99999999997399989877887778999999829
No 317
>TIGR01214 rmlD dTDP-4-dehydrorhamnose reductase; InterPro: IPR005913 dTDP-4-dehydrorhamnose reductase (1.1.1.133 from EC) catalyzes the last of 4 steps in making dTDP-rhamnose, a precursor of LPS molecules such as core antigen and O-antigen. dTDP-6-deoxy-L-mannose + NADP+ = dTDP-4-dehydro-6-deoxy-L-mannose + NADPH ; GO: 0008831 dTDP-4-dehydrorhamnose reductase activity, 0045226 extracellular polysaccharide biosynthetic process.
Probab=23.66 E-value=41 Score=12.67 Aligned_cols=32 Identities=19% Similarity=0.362 Sum_probs=15.9
Q ss_pred CHHHHHHHHHHHH-HHCCCC-EE-----EEECHHHHHHH
Q ss_conf 7879999999998-627983-99-----99414778999
Q gi|254780869|r 209 SEKGIKKNIYDIM-KNAKGC-VL-----VTTFSSSVSRI 240 (559)
Q Consensus 209 sE~~v~~~i~~~~-~~~~gr-Vi-----v~~fasni~Ri 240 (559)
|..++-..|.++. +...-. |+ -+||+..|+|.
T Consensus 173 ~g~NF~~tMlrLaG~~~~~l~vV~DQ~GsPTy~~dLA~~ 211 (317)
T TIGR01214 173 SGRNFVKTMLRLAGKEREELRVVDDQIGSPTYAKDLARA 211 (317)
T ss_pred CCCCHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHHH
T ss_conf 842179999985378998403785576873589999999
No 318
>pfam10137 TIR-like Predicted nucleotide-binding protein containing TIR-like domain. Members of this family of bacterial nucleotide-binding proteins contain a TIR-like domain. Their exact function has not, as yet, been defined.
Probab=23.45 E-value=41 Score=12.64 Aligned_cols=23 Identities=22% Similarity=0.453 Sum_probs=12.3
Q ss_pred EEEECCCCCCCC-CHHHHHHHCCC
Q ss_conf 996054301216-07888986299
Q gi|254780869|r 71 IFITHAHEDHYG-ALHDLWSFLHV 93 (559)
Q Consensus 71 i~iTH~H~DHiG-alp~l~~~~~~ 93 (559)
|||.|||.+-.- .+..++.+++.
T Consensus 2 VFIvHG~d~~~~~~~~~~l~klgl 25 (124)
T pfam10137 2 VFIVHGHDEAAKDEVARFLEKLGL 25 (124)
T ss_pred EEEEECCCHHHHHHHHHHHHHCCC
T ss_conf 899937998999999999997699
No 319
>TIGR01111 mtrA tetrahydromethanopterin S-methyltransferase, subunit A; InterPro: IPR005778 This model describes N5-methyltetrahydromethanopterin: coenzyme M methyltransferase subunit A in methanogenic archaea. This methyltranferase is a membrane-associated enzyme complex that uses methyl-transfer reaction to drive sodium-ion pump. 5-methyl-5,6,7,8-tetrahydromethanopterin + 2-mercaptoethanesulphonate = 5,6,7,8-tetrahydromethanopterin + 2-(methylthio)ethanesulphonate. Archaea have evolved energy-yielding pathways marked by one-carbon biochemistry featuring novel cofactors and enzymes. This transferase (encoded by subunit A) is involved in the transfer of 'methyl' group from N5-methyltetrahydromethanopterin to coenzyme M. In an accompanying reaction, methane is produced by two-electron reduction of methyl-coenzyme M by another enzyme, methyl-coenzyme M reductase.; GO: 0030269 tetrahydromethanopterin S-methyltransferase activity, 0006814 sodium ion transport, 0005737 cytoplasm, 0012506 vesicle membrane.
Probab=23.40 E-value=41 Score=12.63 Aligned_cols=31 Identities=29% Similarity=0.440 Sum_probs=16.7
Q ss_pred HCCCCEEEEECHHHHHHHHHHHHHHHHHC-CEEEEEC
Q ss_conf 27983999941477899999999998718-8699844
Q gi|254780869|r 223 NAKGCVLVTTFSSSVSRIRSIIDIAEQIG-RKIVLLG 258 (559)
Q Consensus 223 ~~~grViv~~fasni~Ri~~i~~~a~~~~-R~v~i~G 258 (559)
+.+.-|.|.|.+||+.- ++...+| -|.++.|
T Consensus 22 dpe~~V~vvTlGSH~~~-----~~~~~AGedkaAiaG 53 (246)
T TIGR01111 22 DPESPVLVVTLGSHIEE-----QIILDAGEDKAAIAG 53 (246)
T ss_pred CCCCCCEEEECCCCCCC-----CCHHHCCCCCEEEEC
T ss_conf 87887268873456766-----503222897126617
No 320
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=23.30 E-value=42 Score=12.62 Aligned_cols=26 Identities=31% Similarity=0.491 Sum_probs=19.5
Q ss_pred EEECHHHHHHHHHHHHHHHHHCCEEEEE
Q ss_conf 9941477899999999998718869984
Q gi|254780869|r 230 VTTFSSSVSRIRSIIDIAEQIGRKIVLL 257 (559)
Q Consensus 230 v~~fasni~Ri~~i~~~a~~~~R~v~i~ 257 (559)
.+|||+++.++..|++.| ..+.+++.
T Consensus 386 LSTFS~hm~~i~~il~~a--~~~sLVLl 411 (780)
T PRK00409 386 LSTFSGHMTNIVRILEKA--DENSLVLF 411 (780)
T ss_pred HHHHHHHHHHHHHHHHHC--CCCEEEEE
T ss_conf 524999999999999738--99808812
No 321
>PRK13368 3-deoxy-manno-octulosonate cytidylyltransferase; Provisional
Probab=23.11 E-value=42 Score=12.60 Aligned_cols=70 Identities=20% Similarity=0.276 Sum_probs=45.0
Q ss_pred HHHHHHHHHHHC-CCCEEEEECHHHHHHHHHHHHHHHHHCCEEEEECHH----HHHHHHHHHHCCC-----CCCCCCCCC
Q ss_conf 999999998627-983999941477899999999998718869984486----9999998874287-----677654226
Q gi|254780869|r 213 IKKNIYDIMKNA-KGCVLVTTFSSSVSRIRSIIDIAEQIGRKIVLLGSS----LKRVVSVAIDVGI-----IKKDQLFLS 282 (559)
Q Consensus 213 v~~~i~~~~~~~-~grViv~~fasni~Ri~~i~~~a~~~~R~v~i~Grs----~~~~~~~a~~~g~-----l~~~~~~i~ 282 (559)
+....++..+.. -.+|+|+|=+ +.|.+.|++.|-++++.+.. ..|..+++..+++ +..+..+++
T Consensus 30 i~~v~~~a~~s~~~d~v~VaTdd------~eI~~~~k~~g~~~i~ts~~~~~GTdRi~Ea~~~~~~d~ivnvQgDePli~ 103 (238)
T PRK13368 30 IQHVYERAAQAAGVEEVYVATDD------QRIEDAVEAFGGKVVMTSDDHLSGTDRLAEVMLKIEADIYINVQGDEPLIR 103 (238)
T ss_pred HHHHHHHHHHCCCCCEEEEECCC------HHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHCCCCEEEEECCCCCCCC
T ss_conf 99999999846898829995684------248777500463278515655771478999985159878999538867789
Q ss_pred HHHHCC
Q ss_conf 566223
Q gi|254780869|r 283 DESFGL 288 (559)
Q Consensus 283 ~~~~~~ 288 (559)
++.+..
T Consensus 104 p~~I~~ 109 (238)
T PRK13368 104 PRDIDT 109 (238)
T ss_pred HHHHHH
T ss_conf 999999
No 322
>TIGR02256 ICE_VC0181 conserved hypothetical protein; InterPro: IPR011952 This uncharacterised protein is found in several proteobacteria, among them Rhizobium sp. (strain NGR234), Vibrio cholerae, Myxococcus xanthus, and Escherichia coli strain ECOR31. In the latter, it is part of an integrative and conjugative element that is readily induced to excise and circularise ..
Probab=23.08 E-value=42 Score=12.59 Aligned_cols=44 Identities=25% Similarity=0.419 Sum_probs=19.4
Q ss_pred EECCCEEEECCCCEECCCCCCCCC--CCHHHHHH--CCCC-----CCEEEEEC
Q ss_conf 876817998334024677665423--89889986--0878-----82999963
Q gi|254780869|r 154 RSPVGNIVHTGDWKLDDDAILGDV--TDKDSLCA--IGNE-----GILALMCD 197 (559)
Q Consensus 154 ~t~~g~i~ytGDfk~d~~p~~g~~--~d~~~l~~--~~~~-----gv~~Li~e 197 (559)
+..+|.-+|-|||=--++.-.|+| ||..-|.. ++.| .+++|||-
T Consensus 68 ~~S~g~~~YlGeWHTHPed~pG~PS~TDr~swrt~i~s~E~raPrP~lllivG 120 (143)
T TIGR02256 68 ERSGGVDVYLGEWHTHPEDQPGEPSYTDRRSWRTIIVSDEARAPRPMLLLIVG 120 (143)
T ss_pred HHCCCEEEEECCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCEEEEEEC
T ss_conf 54086446433730588874225875447877500247434689844899844
No 323
>cd01744 GATase1_CPSase Small chain of the glutamine-dependent form of carbamoyl phosphate synthase, CPSase II. This group of sequences represents the small chain of the glutamine-dependent form of carbamoyl phosphate synthase, CPSase II. CPSase II catalyzes the production of carbomyl phosphate (CP) from bicarbonate, glutamine and two molecules of MgATP. The reaction is believed to proceed by a series of four biochemical reactions involving a minimum of three discrete highly reactive intermediates. The synthesis of CP is critical for the initiation of two separate biosynthetic pathways. In one CP is coupled to aspartate, its carbon and nitrogen nuclei ultimately incorporated into the aromatic moieties of pyrimidine nucleotides. In the second pathway CP is condensed with ornithine at the start of the urea cycle and is utilized for the detoxification of ammonia and biosynthesis of arginine. CPSases may be encoded by one or by several genes, depending on the species. The E.coli enzyme is
Probab=22.99 E-value=42 Score=12.58 Aligned_cols=75 Identities=17% Similarity=0.217 Sum_probs=38.5
Q ss_pred EEEEECCCCCCC---CCCCCEEE-ECC-CHHHHHHHHHCCCEEEEECCCC--CCCC-CHHHHHH--HCCCCEECCHHHHH
Q ss_conf 899977676788---87675028-707-9579876641246899605430--1216-0788898--62997792999999
Q gi|254780869|r 34 WIMIDCGVSFPK---DDLPGVDL-VFP-DITFIMKERKNLMAIFITHAHE--DHYG-ALHDLWS--FLHVPVYASPFAIG 103 (559)
Q Consensus 34 ~iiiD~G~~fp~---~~~~gid~-iiP-d~~~l~~~~~~i~~i~iTH~H~--DHiG-alp~l~~--~~~~pIY~s~~t~~ 103 (559)
++++|+|..+-. -..+|+.. |+| |.+.=+-...+.+||+||-|-- ...+ .++.+.. ..++||.+==+...
T Consensus 1 i~ilDfGsqy~i~r~lrelg~~~~v~~~~~~~~~i~~~~p~giIlS~GPg~p~~~~~~~~~~~~~~~~~iPILGIClG~Q 80 (178)
T cd01744 1 VVVIDFGVKHNILRELLKRGCEVTVVPYNTDAEEILKLDPDGIFLSNGPGDPALLDEAIKTVRKLLGKKIPIFGICLGHQ 80 (178)
T ss_pred CEEEECCCHHHHHHHHHHCCCEEEEEECCCCHHHHHHCCCCEEEECCCCCCHHHHCCHHHHHHHHHHCCCCEEEECHHHH
T ss_conf 99998874999999999879979999398999999841999799899999957734449999999746998899812178
Q ss_pred HHHHH
Q ss_conf 99999
Q gi|254780869|r 104 LLEAK 108 (559)
Q Consensus 104 li~~~ 108 (559)
+|-..
T Consensus 81 ~ia~~ 85 (178)
T cd01744 81 LLALA 85 (178)
T ss_pred HHHHH
T ss_conf 89988
No 324
>TIGR01607 PST-A Plasmodium subtelomeric family (PST-A); InterPro: IPR006494 These proteins represent a paralogous family of genes found in Plasmodium falciparum and Plasmodium yoelii that are closely related to various phospholipases and lysophospholipases of plants as well as generally being related to the alpha/beta-fold superfamily of hydrolases. These genes are preferentially located in the subtelomeric regions of the chromosomes of both P. falciparum and P. yoelii. .
Probab=22.86 E-value=35 Score=13.17 Aligned_cols=28 Identities=29% Similarity=0.424 Sum_probs=17.9
Q ss_pred CCCCCCCEEEEEEECCCCHHHHHHHHHHHHH
Q ss_conf 3026896699996158861778999997651
Q gi|254780869|r 320 VKLAEKDTVIFSSRAIPGNEVAIGHIKNRLV 350 (559)
Q Consensus 320 i~l~~~D~vI~ss~~ipGnE~~~~~~~n~l~ 350 (559)
-+++.=|-+| ..-||||+-..++++|+.
T Consensus 351 ~t~edMDH~i---TiEPGNE~~L~KiIeWI~ 378 (379)
T TIGR01607 351 YTVEDMDHVI---TIEPGNEKVLKKIIEWIS 378 (379)
T ss_pred CCEECCCCEE---ECCCCCCCHHHHHHHHCC
T ss_conf 1100676203---104787506667763127
No 325
>pfam08400 phage_tail_N Prophage tail fibre N-terminal. This domain is found at the N-terminus of prophage tail fibre proteins.
Probab=22.67 E-value=43 Score=12.54 Aligned_cols=39 Identities=21% Similarity=0.329 Sum_probs=29.4
Q ss_pred CCEEEEEEECCCCCCCCCEEEEEECCCEEEECCCCEECCCCCCCC
Q ss_conf 348999985567777653567987681799833402467766542
Q gi|254780869|r 132 GAFSIESVRVNHSIPETMALVIRSPVGNIVHTGDWKLDDDAILGD 176 (559)
Q Consensus 132 g~~~v~~~~~~Hsip~a~~~~I~t~~g~i~ytGDfk~d~~p~~g~ 176 (559)
|.++++. -||.|.+.++..+..-.|.||+.+..+--.|-
T Consensus 47 G~Ys~~v------epG~Y~V~l~~~g~~~~~vG~i~V~~ds~pGT 85 (134)
T pfam08400 47 GRYSMDV------EPGKYSVTLTVDGRNPSYVGDITVYEDSKPGT 85 (134)
T ss_pred CCEEEEE------CCEEEEEEEEECCCCCEEEEEEEEECCCCCCC
T ss_conf 5178882------36079999998671525851389956999861
No 326
>COG0460 ThrA Homoserine dehydrogenase [Amino acid transport and metabolism]
Probab=22.65 E-value=43 Score=12.53 Aligned_cols=62 Identities=18% Similarity=0.142 Sum_probs=35.2
Q ss_pred CCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEEC-HHHHHHHHHHHHHHHHHCCEEEEEC
Q ss_conf 882999963564578887777879999999998627983999941-4778999999999987188699844
Q gi|254780869|r 189 EGILALMCDSTNAMREGTCISEKGIKKNIYDIMKNAKGCVLVTTF-SSSVSRIRSIIDIAEQIGRKIVLLG 258 (559)
Q Consensus 189 ~gv~~Li~esT~~~~~~~~~sE~~v~~~i~~~~~~~~grViv~~f-asni~Ri~~i~~~a~~~~R~v~i~G 258 (559)
+.+|+ +.|.+-.+ .++++. .+.+.+.+++ |+-+||+= +-.-..-.++.++|+++|+++.+..
T Consensus 77 ~~~dv-vve~~~~d---~~~~~~--~~~~~~al~~--GkhVVTaNK~~lA~~~~el~~~A~~~g~~l~yEA 139 (333)
T COG0460 77 EDIDV-VVELVGGD---VEPAEP--ADLYLKALEN--GKHVVTANKALLALHYHELREAAEKNGVKLLYEA 139 (333)
T ss_pred CCCCE-EEECCCCC---CCCHHH--HHHHHHHHHC--CCEEECCCCHHHHHHHHHHHHHHHHHCCEEEEEE
T ss_conf 56887-98557666---874123--8999999975--9969978964767669999999997398589985
No 327
>PRK07771 consensus
Probab=22.59 E-value=43 Score=12.53 Aligned_cols=52 Identities=19% Similarity=0.275 Sum_probs=31.8
Q ss_pred ECCCEEEEECCC-CEEEEEEEECCCEEECCCCEECCCCHHHHHHHHHHHCCEEEEEEE
Q ss_conf 003227897389-704501232132021233100255058899997403874999999
Q gi|254780869|r 416 VRNGKMLRLFPD-PIEIIDEVVHGLFLKDGFLIGKFADLGIAKRRQLSFVGHLSVNVL 472 (559)
Q Consensus 416 ~~NGd~i~l~~~-~~~i~~~v~~g~~~vDG~~i~~~~~~vl~eR~~Ls~~GiV~V~vi 472 (559)
..-||+..++++ .+.+.+..+- -+-+.|..+.. .+. |...++..|+.-+.|+
T Consensus 411 ~~TGDlg~~d~dG~l~~~GR~~d-~Ik~~G~~I~p-~EI---E~~l~~hp~V~~aaVv 463 (541)
T PRK07771 411 LRTGDVGRIDEDGFITLTDRAKD-VIKSGGEWISS-VEL---ENALIAHPAVAEAAVV 463 (541)
T ss_pred CCCCCEEEEECCCEEEEEEEECC-EEEECCEEECH-HHH---HHHHHHCCCCCEEEEE
T ss_conf 31487799913888999086228-89989999888-999---9999859981379999
No 328
>pfam08543 Phos_pyr_kin Phosphomethylpyrimidine kinase. This enzyme EC:2.7.4.7 is part of the Thiamine pyrophosphate (TPP) synthesis pathway, TPP is an essential cofactor for many enzymes.
Probab=22.50 E-value=43 Score=12.51 Aligned_cols=88 Identities=18% Similarity=0.218 Sum_probs=45.9
Q ss_pred CCCCCCCCCCCHHHHHHCCCCC---CEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECHHHHHHHHHHHH
Q ss_conf 6776654238988998608788---2999963564578887777879999999998627983999941477899999999
Q gi|254780869|r 169 DDDAILGDVTDKDSLCAIGNEG---ILALMCDSTNAMREGTCISEKGIKKNIYDIMKNAKGCVLVTTFSSSVSRIRSIID 245 (559)
Q Consensus 169 d~~p~~g~~~d~~~l~~~~~~g---v~~Li~esT~~~~~~~~~sE~~v~~~i~~~~~~~~grViv~~fasni~Ri~~i~~ 245 (559)
|.+.--|-..|+.-+..+|-.+ +.++.+-.|.....-...+...+.+.++.++++.+=.+|-.=|=.+.+-++.+.+
T Consensus 1 DpsgGAGi~ADi~t~~alG~~~~~v~Talt~Qnt~~v~~v~~v~~~~i~~Ql~~l~~d~~~~aIKiG~L~s~~~i~~v~~ 80 (246)
T pfam08543 1 DSSGGAGIQADLKTFSALGVYGMSVITALTAQNTLGVQGVHPLPPEFVAAQLDAVLEDFPVDAVKTGMLGSAEIIEAVAE 80 (246)
T ss_pred CCCCHHHHHHHHHHHHHCCCEECCEEEEEEEECCCCEEEEEECCHHHHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHH
T ss_conf 97955999999999998599353210389876487714889689999999999998168978899998588899999999
Q ss_pred HHHHHCCEEEE
Q ss_conf 99871886998
Q gi|254780869|r 246 IAEQIGRKIVL 256 (559)
Q Consensus 246 ~a~~~~R~v~i 256 (559)
..++.+-+|++
T Consensus 81 ~l~~~~~~vV~ 91 (246)
T pfam08543 81 KLDKYGVPVVL 91 (246)
T ss_pred HHHHCCCCEEE
T ss_conf 99717999998
No 329
>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase. Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo
Probab=22.39 E-value=43 Score=12.50 Aligned_cols=79 Identities=20% Similarity=0.250 Sum_probs=44.0
Q ss_pred CCC-CEEEEECHHHHHHHHHHHHHHHHHCCEEEEECHHHHHHHHHHHHCCC-CC-C-CCC-CCCHHHHCCCCCCCEEEEE
Q ss_conf 798-39999414778999999999987188699844869999998874287-67-7-654-2265662238802089999
Q gi|254780869|r 224 AKG-CVLVTTFSSSVSRIRSIIDIAEQIGRKIVLLGSSLKRVVSVAIDVGI-IK-K-DQL-FLSDESFGLYPREQLIVIA 298 (559)
Q Consensus 224 ~~g-rViv~~fasni~Ri~~i~~~a~~~~R~v~i~Grs~~~~~~~a~~~g~-l~-~-~~~-~i~~~~~~~~p~~~~~ii~ 298 (559)
-+| +++|.--..-|.+... .++.+.|.+|.+.||+++|.-.++.++.. +. . .+. .-..++....=++--++++
T Consensus 26 l~g~~~~V~G~tG~vG~~~A--~~lA~~Ga~v~lv~R~~ek~~~~a~~i~~r~g~~~~~~~~~~~~~~~~~l~~adiV~~ 103 (194)
T cd01078 26 LKGKTAVVLGGTGPVGQRAA--VLLAREGARVVLVGRDLERAQKAADSLRARFGEGVGAVETSDDAARAAAIKGADVVFA 103 (194)
T ss_pred CCCCEEEEECCCCHHHHHHH--HHHHHCCCEEEEEECCHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCCEEEE
T ss_conf 67988999858857899999--9999839979999587888999999999970987311357887789977466989996
Q ss_pred ECCCCC
Q ss_conf 669632
Q gi|254780869|r 299 TGSQGE 304 (559)
Q Consensus 299 TGsqge 304 (559)
||+-|-
T Consensus 104 a~aAGv 109 (194)
T cd01078 104 AGAAGV 109 (194)
T ss_pred CCHHHH
T ss_conf 427778
No 330
>PRK12738 kbaY tagatose-bisphosphate aldolase; Reviewed
Probab=22.32 E-value=43 Score=12.49 Aligned_cols=158 Identities=14% Similarity=0.189 Sum_probs=73.7
Q ss_pred HHHHHHHC-CCCEEEEEC-HHHHHHHHHHHHHHHHHCCEEEEECH-HHHHHHHHHHHCCCCCCCCCCCCHHHHCCCCCCC
Q ss_conf 99998627-983999941-47789999999999871886998448-6999999887428767765422656622388020
Q gi|254780869|r 217 IYDIMKNA-KGCVLVTTF-SSSVSRIRSIIDIAEQIGRKIVLLGS-SLKRVVSVAIDVGIIKKDQLFLSDESFGLYPREQ 293 (559)
Q Consensus 217 i~~~~~~~-~grViv~~f-asni~Ri~~i~~~a~~~~R~v~i~Gr-s~~~~~~~a~~~g~l~~~~~~i~~~~~~~~p~~~ 293 (559)
+.++++.+ +++--|++| ..|.+-+..++++|++.+.++.+... ...++. |+-.........-+....|
T Consensus 6 ~k~lL~~A~~~~yAV~AfNv~n~e~~~Avi~AAee~~sPvIlq~s~~~~~~~------~~~~~~~~~~~~a~~~~VP--- 76 (286)
T PRK12738 6 TKYLLQDAQANGYAVPAFNIHNAETIQAILEVCSEMRSPVILAGTPGTFKHI------ALEEIYALCSAYSTTYNMP--- 76 (286)
T ss_pred HHHHHHHHHHCCCEEEEEEECCHHHHHHHHHHHHHHCCCEEEECCHHHHHHC------CHHHHHHHHHHHHHHCCCC---
T ss_conf 9999999998795799988899999999999999978998999375377666------9999999999999987999---
Q ss_pred EEEEEECCCCCHHHHHHHHCCCCCCCCCCCCC-CEEEEEEECCCCHHHHHHHH---HHHHHCCCEEEEE-----CCCCCC
Q ss_conf 89999669632688988520277765302689-66999961588617789999---9765103113430-----356664
Q gi|254780869|r 294 LIVIATGSQGEPRSALAQLSRGEMRNVKLAEK-DTVIFSSRAIPGNEVAIGHI---KNRLVEQGVRVIA-----EDAECP 364 (559)
Q Consensus 294 ~~ii~TGsqge~~a~l~ria~~~~~~i~l~~~-D~vI~ss~~ipGnE~~~~~~---~n~l~~~g~~vi~-----~~~~~~ 364 (559)
+.+ .=..|..+....|. ++.| +.|.|-.+..| .|..+..+ .+.-...|+.|=- .+.+..
T Consensus 77 -V~l-HLDH~~~~e~i~~a---------i~~GftSVM~DgS~lp-~eeNi~~Tk~vv~~Ah~~gv~VEaElG~igg~ed~ 144 (286)
T PRK12738 77 -LAL-HLDHHESLDDIRRK---------VHAGVRSAMIDGSHFP-FAENVKLVKSVVDFCHSQDCSVEAELGRLGGVEDD 144 (286)
T ss_pred -EEE-ECCCCCCHHHHHHH---------HHCCCCEEEEECCCCC-HHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCC
T ss_conf -999-89999999999999---------9779987987389999-99999999999999847399788864134665777
Q ss_pred EECCC----CCCHHHHHHHHHHCCCCEEEE----ECCCH
Q ss_conf 13157----889789999997549539997----04577
Q gi|254780869|r 365 VHVSG----HPYPNDLKRMYQWIRPQVLVA----IHGEP 395 (559)
Q Consensus 365 iH~SG----Ha~~edl~~li~~ikPk~~IP----vHGe~ 395 (559)
+.+-. -.+.+|-+++++......+-| +||.|
T Consensus 145 ~~~~~~~~~~T~peea~~Fv~~TgvD~LAvaiGn~HG~y 183 (286)
T PRK12738 145 MSVDAESAFLTDPQEAKRFVELTGVDSLAVAIGTAHGLY 183 (286)
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHCCCEEHHHHCCCCCCC
T ss_conf 666652235799999999999879781223323546777
No 331
>KOG0385 consensus
Probab=22.32 E-value=43 Score=12.49 Aligned_cols=32 Identities=25% Similarity=0.388 Sum_probs=17.0
Q ss_pred CCCCCCCCEEEEEEEC-CCCHHHHHHHHHHHHHCCC
Q ss_conf 5302689669999615-8861778999997651031
Q gi|254780869|r 319 NVKLAEKDTVIFSSRA-IPGNEVAIGHIKNRLVEQG 353 (559)
Q Consensus 319 ~i~l~~~D~vI~ss~~-ipGnE~~~~~~~n~l~~~g 353 (559)
.|.|..-||||+=-+. -|-+.. +.+|+-.|.|
T Consensus 553 GINL~aADtVIlyDSDWNPQ~DL---QAmDRaHRIG 585 (971)
T KOG0385 553 GINLTAADTVILYDSDWNPQVDL---QAMDRAHRIG 585 (971)
T ss_pred CCCCCCCCEEEEECCCCCCHHHH---HHHHHHHHCC
T ss_conf 30222364799966899821437---8899888607
No 332
>PRK06018 putative acyl-CoA synthetase; Provisional
Probab=21.93 E-value=44 Score=12.44 Aligned_cols=52 Identities=15% Similarity=0.195 Sum_probs=30.9
Q ss_pred ECCCEEEEECCC-CEEEEEEEECCCEEECCCCEECCCCHHHHHHHHHHHCCEEEEEEE
Q ss_conf 003227897389-704501232132021233100255058899997403874999999
Q gi|254780869|r 416 VRNGKMLRLFPD-PIEIIDEVVHGLFLKDGFLIGKFADLGIAKRRQLSFVGHLSVNVL 472 (559)
Q Consensus 416 ~~NGd~i~l~~~-~~~i~~~v~~g~~~vDG~~i~~~~~~vl~eR~~Ls~~GiV~V~vi 472 (559)
..-||+..++++ ...+.++.+- -+-+.|..+.+. + =|...++..++.-+.|+
T Consensus 412 ~~TGDlg~~d~dG~l~~~gR~kd-~Ik~~G~~V~p~-E---IE~~l~~hp~V~eaaVv 464 (540)
T PRK06018 412 FDTGDVATIDADGYMRITDRSKD-VIKSGGEWISSI-D---LENLAVGHPKVAEAAVI 464 (540)
T ss_pred EECCCEEEECCCCEEEEEECCCC-EEEECCEEECHH-H---HHHHHHHCCCCCEEEEE
T ss_conf 67585699878956999973657-899899999989-9---99999729993359999
No 333
>COG4565 CitB Response regulator of citrate/malate metabolism [Transcription / Signal transduction mechanisms]
Probab=21.92 E-value=44 Score=12.43 Aligned_cols=21 Identities=24% Similarity=0.227 Sum_probs=12.5
Q ss_pred CCCCEEEEECHHHHHHHHHHH
Q ss_conf 798399994147789999999
Q gi|254780869|r 224 AKGCVLVTTFSSSVSRIRSII 244 (559)
Q Consensus 224 ~~grViv~~fasni~Ri~~i~ 244 (559)
.+..||+.|-|++++-|++.+
T Consensus 73 ~~~DVI~iTAA~d~~tI~~al 93 (224)
T COG4565 73 YPVDVIVITAASDMETIKEAL 93 (224)
T ss_pred CCCCEEEEECCCHHHHHHHHH
T ss_conf 997889995344378999999
No 334
>PRK09196 fructose-1,6-bisphosphate aldolase; Reviewed
Probab=21.80 E-value=44 Score=12.42 Aligned_cols=42 Identities=14% Similarity=0.385 Sum_probs=32.5
Q ss_pred HHHHHHHHC-CCCEEEEEC-HHHHHHHHHHHHHHHHHCCEEEEE
Q ss_conf 999998627-983999941-477899999999998718869984
Q gi|254780869|r 216 NIYDIMKNA-KGCVLVTTF-SSSVSRIRSIIDIAEQIGRKIVLL 257 (559)
Q Consensus 216 ~i~~~~~~~-~grViv~~f-asni~Ri~~i~~~a~~~~R~v~i~ 257 (559)
++.++++.+ ++.--|++| ..|++-++.++++|++.+.+|.+.
T Consensus 5 ~~k~lL~~A~~~~YAV~AfNv~n~e~~~Avi~AAee~~sPvIlq 48 (347)
T PRK09196 5 SLRQLLDHAAEHGYGVPAFNVNNLEQVQAIMEAADETDSPVILQ 48 (347)
T ss_pred CHHHHHHHHHHCCEEEEEEEECCHHHHHHHHHHHHHHCCCEEEE
T ss_conf 58999999998894899876798999999999999968998999
No 335
>PRK06460 hypothetical protein; Provisional
Probab=21.78 E-value=44 Score=12.41 Aligned_cols=14 Identities=14% Similarity=0.079 Sum_probs=6.7
Q ss_pred CCHHHHHHHHHHHH
Q ss_conf 66588999999999
Q gi|254780869|r 495 GDGGKIHKLLLKTV 508 (559)
Q Consensus 495 ~~~~~l~~~i~~~i 508 (559)
++.+++++.+..++
T Consensus 359 Ed~eDLi~DL~~AL 372 (375)
T PRK06460 359 EDVEDLIEDLDRAL 372 (375)
T ss_pred CCHHHHHHHHHHHH
T ss_conf 99999999999998
No 336
>COG4765 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=21.74 E-value=45 Score=12.41 Aligned_cols=54 Identities=20% Similarity=0.294 Sum_probs=32.1
Q ss_pred CCEECCHHHHHHHHHHHHHCCCCCCCCEEEECCCCEEEECCEEEEEEECCCCCCCC
Q ss_conf 97792999999999999854886556225517555577634899998556777765
Q gi|254780869|r 93 VPVYASPFAIGLLEAKRVYERVSKKIPCISFQAGDKVDVGAFSIESVRVNHSIPET 148 (559)
Q Consensus 93 ~pIY~s~~t~~li~~~~~~~~~~~~~~~~~i~~~~~~~~g~~~v~~~~~~Hsip~a 148 (559)
-|+++.++.....+ -...+++-....-..+..++++.+|.++|++ ++++|-++.
T Consensus 49 ~~a~a~r~~n~va~-~~aldKIT~~~~~fdv~igE~v~fg~lqvt~-r~C~s~~~~ 102 (164)
T COG4765 49 DPAEAARFKNYVAK-FSALDKITGRITEFDVYIGETVQFGALQVTP-RVCYSRLDD 102 (164)
T ss_pred CHHHHHHHHHHHHH-HHHHHHEEEEEEEEEEECCCEEEEEEEEEEE-EEEECCCCC
T ss_conf 71567766415777-6224110035799878528877860289875-233346787
No 337
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=21.51 E-value=45 Score=12.38 Aligned_cols=29 Identities=21% Similarity=0.426 Sum_probs=24.4
Q ss_pred EEECHHHHHHHHHHHHHHHHHCCEEEEEC
Q ss_conf 99414778999999999987188699844
Q gi|254780869|r 230 VTTFSSSVSRIRSIIDIAEQIGRKIVLLG 258 (559)
Q Consensus 230 v~~fasni~Ri~~i~~~a~~~~R~v~i~G 258 (559)
.++|+..+.|+.++++.+.+..+.+++..
T Consensus 84 ~S~F~~E~~~~~~il~~~~~~~~sLvliD 112 (199)
T cd03283 84 ISYFYAELRRLKEIVEKAKKGEPVLFLLD 112 (199)
T ss_pred CCHHHHHHHHHHHHHHHHCCCCCEEEEEC
T ss_conf 35799999999999997248985799614
No 338
>PRK04928 consensus
Probab=21.51 E-value=45 Score=12.38 Aligned_cols=29 Identities=7% Similarity=0.272 Sum_probs=11.7
Q ss_pred EEEEEEECCCCCCCCCEEEEEECCCEEEE
Q ss_conf 89999855677776535679876817998
Q gi|254780869|r 134 FSIESVRVNHSIPETMALVIRSPVGNIVH 162 (559)
Q Consensus 134 ~~v~~~~~~Hsip~a~~~~I~t~~g~i~y 162 (559)
.++...++...=|..+|.+--..+|+|.-
T Consensus 145 iTi~~~~~~~e~~~~~Gvv~~D~~g~V~~ 173 (405)
T PRK04928 145 LTVSALRMPLEEASQFGVIEVDAEGRMIG 173 (405)
T ss_pred CEEEEEECCHHCCCCCCEEEECCCCCEEE
T ss_conf 31689982411255377688889998999
No 339
>pfam04303 PrpF PrpF protein. PrpF is a protein found in the 2-methylcitrate pathway. It is structurally similar to DAP epimerase and proline racemase. This protein is likely to acts to isomerize trans-aconitate to cis-aconitate.
Probab=21.23 E-value=46 Score=12.34 Aligned_cols=45 Identities=20% Similarity=0.291 Sum_probs=29.7
Q ss_pred EEEEEECCCCCCCCCEEEEEECCCEEEECCCCEECCCCCCCCCCCHH
Q ss_conf 99998556777765356798768179983340246776654238988
Q gi|254780869|r 135 SIESVRVNHSIPETMALVIRSPVGNIVHTGDWKLDDDAILGDVTDKD 181 (559)
Q Consensus 135 ~v~~~~~~Hsip~a~~~~I~t~~g~i~ytGDfk~d~~p~~g~~~d~~ 181 (559)
+|.-+.++..- -.--.+.+++|.+.|.|||++|--|-.|.+..+.
T Consensus 118 ~VrI~n~NT~~--~i~~~v~~~~G~~~~~Gd~~I~GVpGt~a~I~l~ 162 (371)
T pfam04303 118 AVRIWNVNTGK--TIEAHVPTPNGQVQYDGDFEIDGVPGPGAPIALT 162 (371)
T ss_pred EEEEEECCCCC--EEEEEEECCCCCCCCCCCEECCCCCCCCCCCEEC
T ss_conf 99999847898--7999996689941335873427756788851521
No 340
>COG1634 Uncharacterized Rossmann fold enzyme [General function prediction only]
Probab=21.15 E-value=29 Score=13.79 Aligned_cols=25 Identities=16% Similarity=0.064 Sum_probs=13.3
Q ss_pred HHHHHHHHHCCCCEEEEECCCHHHH
Q ss_conf 8999999754953999704577999
Q gi|254780869|r 374 NDLKRMYQWIRPQVLVAIHGEPLHL 398 (559)
Q Consensus 374 edl~~li~~ikPk~~IPvHGe~rhl 398 (559)
.+.....+.-.+=+++--||.-...
T Consensus 104 ~e~~~~~~~~g~i~VVHAHGDNi~~ 128 (232)
T COG1634 104 PEDLLSCTAKGSIVVVHAHGDNIWR 128 (232)
T ss_pred HHHHHHHHCCCCEEEEEECCCCHHH
T ss_conf 8899875336977999946867777
No 341
>pfam10692 DUF2498 Protein of unknown function (DUF2498). Members of this family are Gammaproteobacteria. Many are annotated as like E coli protein YciN. The function is not known.
Probab=21.12 E-value=46 Score=12.32 Aligned_cols=34 Identities=24% Similarity=0.322 Sum_probs=24.4
Q ss_pred CCCCCEEEEEECCCEEEECCCCEECCCCCCCCCC
Q ss_conf 7765356798768179983340246776654238
Q gi|254780869|r 145 IPETMALVIRSPVGNIVHTGDWKLDDDAILGDVT 178 (559)
Q Consensus 145 ip~a~~~~I~t~~g~i~ytGDfk~d~~p~~g~~~ 178 (559)
+.|..+--++-.+|.+||.|+|=+|+.++....+
T Consensus 27 i~GM~a~~Veqk~~VLVFkGeyFLD~~GlPT~kt 60 (82)
T pfam10692 27 IHGMRATSVEQKGGVLVFKGEYFLDEQGLPTPKT 60 (82)
T ss_pred HCCCCCCCEEEECCEEEEEEEEEECCCCCCCCCH
T ss_conf 6341336235558889992106616889988630
No 342
>PRK06901 aspartate-semialdehyde dehydrogenase; Provisional
Probab=21.02 E-value=46 Score=12.31 Aligned_cols=31 Identities=10% Similarity=0.112 Sum_probs=13.4
Q ss_pred EECCCCEECCC-CCCCCCCCHHHHHHCCCCCC
Q ss_conf 98334024677-66542389889986087882
Q gi|254780869|r 161 VHTGDWKLDDD-AILGDVTDKDSLCAIGNEGI 191 (559)
Q Consensus 161 ~ytGDfk~d~~-p~~g~~~d~~~l~~~~~~gv 191 (559)
=-|+=||.|++ |+.=+-.|.+.+..+.++|+
T Consensus 94 DnSSafRmd~dvPLVVPEVN~~~l~~~~~~~I 125 (323)
T PRK06901 94 DMLGICAALANVPVVVPSVNDEQLAELRQRNI 125 (323)
T ss_pred ECCHHHHCCCCCCEECCCCCHHHHHCCHHCCE
T ss_conf 89756517899864806749999851311798
No 343
>TIGR01701 Fdhalpha-like oxidoreductase alpha (molybdopterin) subunit; InterPro: IPR010046 This entry represents a well-defined clade of molybdopterin-dependent formate dehydrogenases, bacterial type , , , . It represents the alpha subunit, which contains a molybdopterin cofactor and generally associate with two other subunits which contain iron-sulphur clusters and cytochromes.; GO: 0008863 formate dehydrogenase activity, 0030151 molybdenum ion binding, 0051539 4 iron 4 sulfur cluster binding.
Probab=20.97 E-value=46 Score=12.30 Aligned_cols=22 Identities=9% Similarity=0.125 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHHCCEEEEEC
Q ss_conf 8999999999987188699844
Q gi|254780869|r 237 VSRIRSIIDIAEQIGRKIVLLG 258 (559)
Q Consensus 237 i~Ri~~i~~~a~~~~R~v~i~G 258 (559)
-++|++++.+--++.|.|+++|
T Consensus 383 ~~~i~~~A~~~a~s~r~v~~w~ 404 (824)
T TIGR01701 383 QEEILEVAKLLANSERVVFCWA 404 (824)
T ss_pred HHHHHHHHHHHHHCCCEEEEEE
T ss_conf 7999999999861247278883
No 344
>KOG1424 consensus
Probab=20.77 E-value=16 Score=15.59 Aligned_cols=25 Identities=16% Similarity=0.292 Sum_probs=10.3
Q ss_pred CEEEEECHHHHHHHHHHHHHHHHHC
Q ss_conf 3999941477899999999998718
Q gi|254780869|r 227 CVLVTTFSSSVSRIRSIIDIAEQIG 251 (559)
Q Consensus 227 rViv~~fasni~Ri~~i~~~a~~~~ 251 (559)
..+++-|-.|++==.++-+..+++.
T Consensus 152 ~l~lTpFErNLE~WRQLWRVlErSD 176 (562)
T KOG1424 152 KLVLTPFERNLEIWRQLWRVLERSD 176 (562)
T ss_pred CEEECHHHHCHHHHHHHHHHHHHCC
T ss_conf 7563624418899999999874324
No 345
>pfam09269 DUF1967 Domain of unknown function (DUF1967). Members of this family contain a four-stranded beta sheet and three alpha helices flanked by an additional beta strand. They are predominantly found in the bacterial GTP-binding protein Obg, and are still functionally uncharacterized.
Probab=20.77 E-value=47 Score=12.27 Aligned_cols=41 Identities=17% Similarity=0.170 Sum_probs=21.0
Q ss_pred CHHHHHHHHHHHHHCCCCCCCCEEEECCCCEEEECCEEEEE
Q ss_conf 99999999999985488655622551755557763489999
Q gi|254780869|r 98 SPFAIGLLEAKRVYERVSKKIPCISFQAGDKVDVGAFSIES 138 (559)
Q Consensus 98 s~~t~~li~~~~~~~~~~~~~~~~~i~~~~~~~~g~~~v~~ 138 (559)
++-+..-+..++...++...+.-.-+++|+++.+|++++++
T Consensus 28 ~~ea~~~f~~~L~~~Gv~~~L~~~G~k~GD~V~Ig~~eFe~ 68 (68)
T pfam09269 28 NDESLRRFARILKKLGVEDALRKAGAKDGDTVRIGDFEFEF 68 (68)
T ss_pred CHHHHHHHHHHHHHCCHHHHHHHCCCCCCCEEEEEEEEEEC
T ss_conf 89999999999998897899997699997999991279969
No 346
>PRK07315 fructose-bisphosphate aldolase; Provisional
Probab=20.67 E-value=47 Score=12.26 Aligned_cols=41 Identities=15% Similarity=0.221 Sum_probs=30.9
Q ss_pred HHHHHHHC-CCCEEEEEC-HHHHHHHHHHHHHHHHHCCEEEEE
Q ss_conf 99998627-983999941-477899999999998718869984
Q gi|254780869|r 217 IYDIMKNA-KGCVLVTTF-SSSVSRIRSIIDIAEQIGRKIVLL 257 (559)
Q Consensus 217 i~~~~~~~-~grViv~~f-asni~Ri~~i~~~a~~~~R~v~i~ 257 (559)
+.++++.+ ++.--|++| ..|++-++.++++|++.+.+|.+.
T Consensus 6 ~k~lL~~A~~~~yAV~AfNv~n~e~~~avi~AAee~~sPvIlq 48 (293)
T PRK07315 6 AEKFVQAARDNGYAVGGFNTNNLEWTQAILRAAEAKKAPVLIQ 48 (293)
T ss_pred HHHHHHHHHHCCEEEEEEEECCHHHHHHHHHHHHHHCCCEEEE
T ss_conf 9999999998790799878799999999999999978899999
No 347
>pfam07485 DUF1529 Domain of Unknown Function (DUF1259). This family is the lppY/lpqO homologue family.
Probab=20.52 E-value=47 Score=12.24 Aligned_cols=50 Identities=24% Similarity=0.285 Sum_probs=32.2
Q ss_pred CCCEEEEEEECCCCHHHHHHHHHHHHHCCCEEEEEC--------CCCCCEECCCCCCHHHHHHHHH
Q ss_conf 896699996158861778999997651031134303--------5666413157889789999997
Q gi|254780869|r 324 EKDTVIFSSRAIPGNEVAIGHIKNRLVEQGVRVIAE--------DAECPVHVSGHPYPNDLKRMYQ 381 (559)
Q Consensus 324 ~~D~vI~ss~~ipGnE~~~~~~~n~l~~~g~~vi~~--------~~~~~iH~SGHa~~edl~~li~ 381 (559)
-||+|++ |..+..++..|.+.|.+|... .....+|..||....+|-+-++
T Consensus 60 ~Gd~vl~--------e~EVnpv~~~l~~~GI~VtAlHNH~l~e~Prl~ymH~~~~gdp~~lA~~vr 117 (123)
T pfam07485 60 MGDFVLL--------EDEVNPVMSALRANGIEVTALHNHWLFEQPRLMYMHIWGVGDPAKLARKVR 117 (123)
T ss_pred EECEEEC--------HHHHHHHHHHHHHCCCEEEEEECCCCCCCCCEEEEEEEECCCHHHHHHHHH
T ss_conf 5047724--------878889999999789869998745777899889999984399999999999
No 348
>TIGR01452 PGP_euk phosphoglycolate/pyridoxal phosphate phosphatase family; InterPro: IPR006349 This family of sequences represent 2-phosphoglycolate phosphatase which is limited to the eukaryotic lineage. PGP is an essential enzyme in the glycolate salvage pathway in higher organisms (photorespiration in plants). Phosphoglycolate results from the oxidase activity of RubisCO in the Calvin cycle when concentrations of carbon dioxide are low relative to oxygen. In mammals, PGP is found in many tissues, notably in red blood cells where P-glycolate is and important activator of the hydrolysis of 2,3-bisphosphoglycerate, a major modifier of the oxygen affinity of hemoglobin. The PGPase enzyme described here is a member of the Haloacid dehalogenase superfamily of hydrolase enzymes. Unlike the bacterial PGP equivalog (IPR006346 from INTERPRO), which is a member of class (subfamily) I, this enzyme is a member of class (subfamily) II . These two enzymes have almost certainly arisen from convergent evolution (although these two ancestors may themselves have diverged from a more distant HAD superfamily progenitor). One of the sequences in the group comes from Chlamydomonas reinhardtii, a photosynthetic alga. The enzyme has been purified and characterised and these data are fully consistent with the assignment of function as a PGPase involved in photorespiration . Another, from Homo sapiens, is supported as a member of the family indirectly. Biochemical characterization of partially purified PGP's from various tissues including red blood cells have been performed while one gene for PGP has been localized to chromosome 16p13.3 . The Homo sapiens sequence maps to chromosome 22. There is indeed a related gene on chromosome 16 (and it is expressed, since EST's are found) which shows 46 0dentity and 59603b08ositives by BLAST2 (E=1e-66). Presumably, these two genes are isoforms and have the same catalytic function while being expressed in different tissues and may be differently regulated. The sequence from Caenorhabditis elegans, is only supported by sequence similarity. This family is closely related to a family of bacterial sequences including the Escherichia coli NagD and Bacillus subtilus AraL genes which are characterised by the ability to hydrolyze para-nitrophenylphosphate (pNPPases or NPPases). The Chlamydomonas reinhardtii PGPase does not catalyze this reaction and so presumably these two groups have different functions and substrate specificities. Many of the genes in this family have been annotated as pNPPases due to this association.; GO: 0016791 phosphoric monoester hydrolase activity, 0008152 metabolic process.
Probab=20.48 E-value=47 Score=12.23 Aligned_cols=37 Identities=27% Similarity=0.642 Sum_probs=17.4
Q ss_pred EEEECC-CCC-CCCCCCCEEEECCC-HHHHHHHHHCCCEEEEECCC
Q ss_conf 999776-767-88876750287079-57987664124689960543
Q gi|254780869|r 35 IMIDCG-VSF-PKDDLPGVDLVFPD-ITFIMKERKNLMAIFITHAH 77 (559)
Q Consensus 35 iiiD~G-~~f-p~~~~~gid~iiPd-~~~l~~~~~~i~~i~iTH~H 77 (559)
+|+||= +.. .+.-+||+ |. +++|....+ +.+|+|.=-
T Consensus 5 fiFDcDGVlWlGe~v~pG~----Pelld~L~~~gK--~~~fvtNNs 44 (288)
T TIGR01452 5 FIFDCDGVLWLGEKVVPGA----PELLDRLAKAGK--KVLFVTNNS 44 (288)
T ss_pred EEECCCCEEECCCEECCCC----HHHHHHHHHCCC--EEEEEECCC
T ss_conf 8974773463586413787----278999974598--799981686
No 349
>TIGR03208 cyc_hxne_CoA_lg cyclohexanecarboxylate-CoA ligase. Members of this protein family are cyclohexanecarboxylate-CoA ligase. This enzyme prepares the aliphatic ring compound, cyclohexanecarboxylate, for dehydrogenation and then degradation by a pathway also used in benzoyl-CoA degradation in Rhodopseudomonas palustris.
Probab=20.36 E-value=47 Score=12.21 Aligned_cols=54 Identities=11% Similarity=0.045 Sum_probs=32.0
Q ss_pred EECCCEEEEECC-CCEEEEEEEECCCEEECCCCEECCCCHHHHHHHHHHHCCEEEEEEEE
Q ss_conf 500322789738-97045012321320212331002550588999974038749999998
Q gi|254780869|r 415 PVRNGKMLRLFP-DPIEIIDEVVHGLFLKDGFLIGKFADLGIAKRRQLSFVGHLSVNVLL 473 (559)
Q Consensus 415 l~~NGd~i~l~~-~~~~i~~~v~~g~~~vDG~~i~~~~~~vl~eR~~Ls~~GiV~V~vii 473 (559)
-..-||+..++. +.+.+.+..+- -+-+.|..+.. .+ =|...++..++.-+.|+-
T Consensus 418 w~~TGDlg~~d~dG~l~i~GR~~d-~I~~~G~~V~p-~E---IE~~L~~hp~V~eaaVvg 472 (538)
T TIGR03208 418 WFDTGDLAFQDAEGYIRINGRSKD-VIIRGGENIPV-VE---IENLLYQHPAVAQVAIVA 472 (538)
T ss_pred CCCCCCEEEECCCCCEEEEEECCC-EEEECCEEECH-HH---HHHHHHHCCCCCEEEEEE
T ss_conf 886587799878973999970479-89989999899-99---999997199812799998
No 350
>TIGR00734 hisAF_rel hisA/hisF family protein; InterPro: IPR004650 This family of proteins has so far been found in three archaeal species: Methanobacterium thermoautotrophicum, Methanococcus jannaschii, and Archaeoglobus fulgidus. Proteins are homologous to phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (HisA) and, with lower similarity, to the cyclase HisF, both of which are enzymes of histidine biosynthesis. Each species with this protein also encodes HisA. However, the function of proteins in this group is unknown..
Probab=20.21 E-value=43 Score=12.54 Aligned_cols=138 Identities=18% Similarity=0.178 Sum_probs=80.4
Q ss_pred EEEECCCCCCCCCEEEEEECCCEEEECCCCEECCCCCCCCCCCHHHHHHCCCCCCE-EEEECCCCCCCCCCCCCHHHHHH
Q ss_conf 99855677776535679876817998334024677665423898899860878829-99963564578887777879999
Q gi|254780869|r 137 ESVRVNHSIPETMALVIRSPVGNIVHTGDWKLDDDAILGDVTDKDSLCAIGNEGIL-ALMCDSTNAMREGTCISEKGIKK 215 (559)
Q Consensus 137 ~~~~~~Hsip~a~~~~I~t~~g~i~ytGDfk~d~~p~~g~~~d~~~l~~~~~~gv~-~Li~esT~~~~~~~~~sE~~v~~ 215 (559)
+.+...-|=|.-.+..++.-+.+.+|..|.-+ +.|..-||+.+.++.. +. -+|.|..- +|+ .++ +
T Consensus 29 esv~~~ss~P~~~ak~~~e~gar~iYiADLd~----I~G~GdNf~~~~~~~~--~~~e~I~D~Gv-----rS~--EdL-E 94 (230)
T TIGR00734 29 ESVISKSSDPVDVAKALKEIGARSIYIADLDA----IVGLGDNFELVKKVDK--VVEELIVDIGV-----RSR--EDL-E 94 (230)
T ss_pred EEEEECCCCHHHHHHHHHHCCCCEEEEEEHHH----HCCCCCHHHHHHHHHH--HCCHHEEECCC-----CCH--HHH-H
T ss_conf 27870788878999999863884686341002----2268854899988632--22001241355-----684--544-3
Q ss_pred HHHHHHHHCCCCEEEEECHHHHHHHHHHHHHHHHH--CCEEEEECHHHHHHHHHHHHCCCCCCCCCCCCHHHHCCC----
Q ss_conf 99999862798399994147789999999999871--886998448699999988742876776542265662238----
Q gi|254780869|r 216 NIYDIMKNAKGCVLVTTFSSSVSRIRSIIDIAEQI--GRKIVLLGSSLKRVVSVAIDVGIIKKDQLFLSDESFGLY---- 289 (559)
Q Consensus 216 ~i~~~~~~~~grViv~~fasni~Ri~~i~~~a~~~--~R~v~i~Grs~~~~~~~a~~~g~l~~~~~~i~~~~~~~~---- 289 (559)
.+..+. +...|++|+|=- ++.+|..-+.-+.+ .|.||=.. -+.+.|...+....+++..+.
T Consensus 95 ~~~f~l-~~~~R~vVaTET--l~~~ell~e~~rnyPPer~VVSlD----------fK~~~L~~~~l~~~leevrd~l~~f 161 (230)
T TIGR00734 95 TLKFVL-EKDDRVVVATET--LDSTELLKEILRNYPPERIVVSLD----------FKEKRLDASSLEESLEEVRDLLNSF 161 (230)
T ss_pred HCCCCC-CCCCCEEEEECC--HHHHHHHHHHHHCCCCCCEEEEEE----------EECCCCCCCCCHHHHHHHHHHCCCC
T ss_conf 103675-635636886245--046789999861589863799984----------0055200013045688887530663
Q ss_pred CCCCEEEEEECC
Q ss_conf 802089999669
Q gi|254780869|r 290 PREQLIVIATGS 301 (559)
Q Consensus 290 p~~~~~ii~TGs 301 (559)
.-.-+++|--+|
T Consensus 162 ~~~GlI~LdI~s 173 (230)
T TIGR00734 162 DLDGLIVLDISS 173 (230)
T ss_pred CCCEEEEECCCC
T ss_conf 101379833633
No 351
>PRK12360 4-hydroxy-3-methylbut-2-enyl diphosphate reductase; Provisional
Probab=20.17 E-value=48 Score=12.19 Aligned_cols=115 Identities=18% Similarity=0.319 Sum_probs=52.1
Q ss_pred HHHHHHCCCCCCEEEEECCCCCCCCCCC--CCHHHHHHHHHHHHHHCCCCEEEEECHHHHHHHHHHHHHHHHHCCEEEEE
Q ss_conf 8899860878829999635645788877--77879999999998627983999941477899999999998718869984
Q gi|254780869|r 180 KDSLCAIGNEGILALMCDSTNAMREGTC--ISEKGIKKNIYDIMKNAKGCVLVTTFSSSVSRIRSIIDIAEQIGRKIVLL 257 (559)
Q Consensus 180 ~~~l~~~~~~gv~~Li~esT~~~~~~~~--~sE~~v~~~i~~~~~~~~grViv~~fasni~Ri~~i~~~a~~~~R~v~i~ 257 (559)
.+-..++.++||...-.+......++.+ .+=+-+.+...+..++ +|.-++-+=-.-+.+++..++-..+.|.++++.
T Consensus 44 ~~vv~~L~~~Gv~~v~~~~~~~~~~~~~ViirAHGv~~~~~~~a~~-~g~~viDaTCP~V~kvh~~v~~~~~~Gy~viii 122 (281)
T PRK12360 44 NQVVSDLEEKGVKVIEESDLDSLKKGDVVIIRSHGVSKKVYKDLTD-KGLEVIDATCPFVKKIQNIVEEYYNKGYKIIIV 122 (281)
T ss_pred HHHHHHHHHCCCEEEECCCCCCCCCCCEEEEECCCCCHHHHHHHHH-CCCCEECCCCCCHHHHHHHHHHHHHCCCEEEEE
T ss_conf 8999999977997981342023799998999899999899999996-599877051810579999999999789979997
Q ss_pred CHHHHHHHHHHHHCCCCCCCCCCC-CHHHHCCCCC-CCEEEE
Q ss_conf 486999999887428767765422-6566223880-208999
Q gi|254780869|r 258 GSSLKRVVSVAIDVGIIKKDQLFL-SDESFGLYPR-EQLIVI 297 (559)
Q Consensus 258 Grs~~~~~~~a~~~g~l~~~~~~i-~~~~~~~~p~-~~~~ii 297 (559)
|..- .-++---+||.+....++ +.+++.++|. +++.++
T Consensus 123 G~~~--HpEv~gi~g~~~~~~~vv~~~~d~~~l~~~~k~~vv 162 (281)
T PRK12360 123 GDPN--HPEVIGINGWCNDSAYIVNSIEEAENIPFLEKVCAV 162 (281)
T ss_pred CCCC--CHHHHHHCCCCCCCEEEEECHHHHHHCCCCCCEEEE
T ss_conf 1689--877652213589855998068888636654776999
No 352
>TIGR00437 feoB ferrous iron transport protein B; InterPro: IPR003373 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent .; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0009276 1-2nm peptidoglycan-based cell wall, 0016021 integral to membrane.
Probab=20.15 E-value=48 Score=12.18 Aligned_cols=76 Identities=16% Similarity=0.114 Sum_probs=46.6
Q ss_pred CEEEEEC--CCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECHHHHHHHHHHHHHHHHHCCEEEEECHHHHHHHHHH
Q ss_conf 2999963--56457888777787999999999862798399994147789999999999871886998448699999988
Q gi|254780869|r 191 ILALMCD--STNAMREGTCISEKGIKKNIYDIMKNAKGCVLVTTFSSSVSRIRSIIDIAEQIGRKIVLLGSSLKRVVSVA 268 (559)
Q Consensus 191 v~~Li~e--sT~~~~~~~~~sE~~v~~~i~~~~~~~~grViv~~fasni~Ri~~i~~~a~~~~R~v~i~Grs~~~~~~~a 268 (559)
-+.=+.| |||+..+..+..|...++.+. .+....|+.=.=|+|++|=.-+-=---+.|-+..+. .+.++.|
T Consensus 41 ~~i~ivDLPG~YSL~~~S~~dE~v~~dyl~---~e~~DLv~nVVDA~nLERnL~LTLQL~E~G~p~i~~----LN~~DeA 113 (733)
T TIGR00437 41 EDIEIVDLPGIYSLTTFSGLDEKVARDYLL---NEKPDLVVNVVDASNLERNLYLTLQLLELGIPMILA----LNLVDEA 113 (733)
T ss_pred EEEEEEECCCCCCCCCCCCCHHHHHHHHHH---CCCCCEEEEEECHHHHHHHHHHHHHHHHHCCHHHHH----HHHHHHH
T ss_conf 278998448730058998742799989975---389967999725667778999999999716258568----7267899
Q ss_pred HHCCC
Q ss_conf 74287
Q gi|254780869|r 269 IDVGI 273 (559)
Q Consensus 269 ~~~g~ 273 (559)
++.|+
T Consensus 114 ~k~GI 118 (733)
T TIGR00437 114 EKKGI 118 (733)
T ss_pred HHCCC
T ss_conf 77296
No 353
>pfam00501 AMP-binding AMP-binding enzyme.
Probab=20.11 E-value=48 Score=12.18 Aligned_cols=53 Identities=11% Similarity=0.082 Sum_probs=20.4
Q ss_pred CCCCCHHHHHHHHHHHHH---HCCCCEEEEEC-HHHHHHHHHHHHHHHHHCCEEEEEC
Q ss_conf 877778799999999986---27983999941-4778999999999987188699844
Q gi|254780869|r 205 GTCISEKGIKKNIYDIMK---NAKGCVLVTTF-SSSVSRIRSIIDIAEQIGRKIVLLG 258 (559)
Q Consensus 205 ~~~~sE~~v~~~i~~~~~---~~~grViv~~f-asni~Ri~~i~~~a~~~~R~v~i~G 258 (559)
+-..|...+...+..... -..+.+++.+. -++..-+..+ -.+-..|-++++..
T Consensus 148 gV~~sh~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~~~~~~-~~~l~~G~~~v~~~ 204 (412)
T pfam00501 148 GVMLTHRNLLALAAGLAERFGLTPGDRVLLLLPLHFDGSVWEI-FGPLLAGGTLVLVP 204 (412)
T ss_pred EEEECHHHHHHHHHHHHHHHCCCCCCEEEEECCHHHHHHHHHH-HHHHHHCCEEEECC
T ss_conf 7886508899999988987098989879995640235579999-99998599999848
No 354
>PRK06155 crotonobetaine/carnitine-CoA ligase; Provisional
Probab=20.05 E-value=48 Score=12.17 Aligned_cols=53 Identities=13% Similarity=0.128 Sum_probs=32.7
Q ss_pred EECCCEEEEECCC-CEEEEEEEECCCEEECCCCEECCCCHHHHHHHHHHHCCEEEEEEE
Q ss_conf 5003227897389-704501232132021233100255058899997403874999999
Q gi|254780869|r 415 PVRNGKMLRLFPD-PIEIIDEVVHGLFLKDGFLIGKFADLGIAKRRQLSFVGHLSVNVL 472 (559)
Q Consensus 415 l~~NGd~i~l~~~-~~~i~~~v~~g~~~vDG~~i~~~~~~vl~eR~~Ls~~GiV~V~vi 472 (559)
-..-||+..++++ .+.+.+..+- -+-+.|..+.. .+. |+..++..|+.-+.|+
T Consensus 413 w~~TGDlg~~d~dG~l~i~GR~dd-~Ik~~G~~V~p-~EV---E~~L~~hp~V~~aaVv 466 (552)
T PRK06155 413 WFHTGDRVVRDADGHFRFIDRIKD-AIRRRGENVSS-YEV---EQAIQSHPAVAAAAVF 466 (552)
T ss_pred CCCCCCEEEECCCCEEEEEECCCC-EEEECCEEECH-HHH---HHHHHHCCCCCEEEEE
T ss_conf 764797699889966999977877-79999999889-999---9999859893679999
No 355
>PRK07684 consensus
Probab=20.05 E-value=48 Score=12.17 Aligned_cols=52 Identities=23% Similarity=0.244 Sum_probs=30.5
Q ss_pred ECCCEEEEECCC-CEEEEEEEECCCEEECCCCEECCCCHHHHHHHHHHHCCEEEEEEE
Q ss_conf 003227897389-704501232132021233100255058899997403874999999
Q gi|254780869|r 416 VRNGKMLRLFPD-PIEIIDEVVHGLFLKDGFLIGKFADLGIAKRRQLSFVGHLSVNVL 472 (559)
Q Consensus 416 ~~NGd~i~l~~~-~~~i~~~v~~g~~~vDG~~i~~~~~~vl~eR~~Ls~~GiV~V~vi 472 (559)
..-||+..++++ .+.+.+..+- -+-+.|..+.. .+. |...++..++.-+.|+
T Consensus 390 ~~TGDlg~~d~dG~l~~~GR~dd-~Ik~~G~~I~p-~EI---E~~l~~~p~V~eaaVv 442 (516)
T PRK07684 390 YHSGDLGYFDKDGYLFVADRVDD-MVISGGVNIYP-REI---EDFLHSHPGVLDVAVL 442 (516)
T ss_pred CCCCCEEEECCCCEEEEEEECCC-EEEECCEEECH-HHH---HHHHHHCCCCCEEEEE
T ss_conf 75686699969955999771168-89999999899-999---9999729981679999
Done!