HHsearch results for GI: 254780869 and protein with PDBid: 2cbn_A
>2cbn_A Ribonuclease Z; phosphodiesterase beta lactamase tRNAse Z, hydrolase, metal- binding, endonuclease, tRNA processing, zinc; 2.9A {Escherichia coli} SCOP: d.157.1.7
Probab=99.72 E-value=6.6e-16 Score=131.86 Aligned_cols=136 Identities=19% Similarity=0.276 Sum_probs=95.0
Q ss_pred EEEEEECCCC-CCCCC--EEEEEEECCCCCCEEEEEECCCCCCCCCCCCEEEECCCHHHHHH---HHHCCCEEEEECCCC
Q ss_conf 3999940686-83466--06999951777864899977676788876750287079579876---641246899605430
Q gi|254780869|r 5 ELVFLPLGGV-GEIGM--NMALYGYGSPSSRKWIMIDCGVSFPKDDLPGVDLVFPDITFIMK---ERKNLMAIFITHAHE 78 (559)
Q Consensus 5 ~i~~~~lGG~-~eiG~--N~~~~~~~~~~~~~~iiiD~G~~fp~~~~~gid~iiPd~~~l~~---~~~~i~~i~iTH~H~ 78 (559)
+|.|+--||. --.++ +|+++++....++..+|||||-++. ..|.+ ...++++|||||.|.
T Consensus 3 ~l~~LGtg~~~p~~~r~~s~~lv~~~~~~~~~~iL~DcG~g~~--------------~~l~~~~~~~~~i~~IfiTH~H~ 68 (306)
T 2cbn_A 3 NLIFLGTSAGVPTRTRNVTAILLNLQHPTQSGLWLFDCGEGTQ--------------HQLLHTAFNPGKLDKIFISHLHG 68 (306)
T ss_dssp EEEEEECBSSSCCSSCCBCEEEEECCCSSCCCEEEECCCTTHH--------------HHHHTSCCCTTTEEEEECSCCCH
T ss_pred EEEEECCCCCCCCCCCCCCEEEEEEECCCCCCEEEEECCHHHH--------------HHHHHHCCCHHHCCEEEEECCCH
T ss_conf 8999776899899999648899997268899489999975899--------------99998189966775899834668
Q ss_pred CCCCCHHHHHHHC-------CCCEECCHHHHHHHHHHHHHCCCCCC--CCEEEECCCCEEEECCEEEEEEECCCCCCCCC
Q ss_conf 1216078889862-------99779299999999999985488655--62255175555776348999985567777653
Q gi|254780869|r 79 DHYGALHDLWSFL-------HVPVYASPFAIGLLEAKRVYERVSKK--IPCISFQAGDKVDVGAFSIESVRVNHSIPETM 149 (559)
Q Consensus 79 DHiGalp~l~~~~-------~~pIY~s~~t~~li~~~~~~~~~~~~--~~~~~i~~~~~~~~g~~~v~~~~~~Hsip~a~ 149 (559)
||+++||.++... .++||+++.+..+++..+........ ..+.+......++.+.+.+++++..|+++ +.
T Consensus 69 DH~~Gl~~ll~~~~~~~~~~~l~i~gP~~~~~~l~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~-~~ 147 (306)
T 2cbn_A 69 DHLFGLPGLLCSRSMSGIIQPLTIYGPQGIREFVETALRISGSWTDYPLEIVEIGAGEILDDGLRKVTAYPLEHPLE-CY 147 (306)
T ss_dssp HHHTTHHHHHHHHHHTTCCSCEEEEESTTHHHHHHHHHHHTTCCCSSCEEEEECCSEEEEECSSEEEEEEECBSSSC-CE
T ss_pred HHCCCCCHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEECCCCCEEECCCEEEEEEECCCCCC-CC
T ss_conf 98078401331012037898765668677899999998653244444412332135411203752565430355544-32
Q ss_pred EEEEEE
Q ss_conf 567987
Q gi|254780869|r 150 ALVIRS 155 (559)
Q Consensus 150 ~~~I~t 155 (559)
++.+..
T Consensus 148 ~~~~~~ 153 (306)
T 2cbn_A 148 GYRIEE 153 (306)
T ss_dssp EEEEEE
T ss_pred CCEEEE
T ss_conf 201220