HHsearch results for GI: 254780869 and protein with PDBid: 2i7t_A
>2i7t_A Cleavage and polyadenylation specificity factor 73 kDa subunit; metallo-B-lactamase, PRE-mRNA processing, artemis, V(D)J recombination; 2.10A {Homo sapiens} SCOP: d.157.1.10 PDB: 2i7v_A
Probab=100.00 E-value=0 Score=438.65 Aligned_cols=398 Identities=17% Similarity=0.203 Sum_probs=267.7
Q ss_pred CCCEEEEEECCCCCCCCCEEEEEEECCCCCCEEEEEECCCCCCCCCCCCEEEECCCHHHHHHHHHCCCEEEEECCCCCCC
Q ss_conf 88639999406868346606999951777864899977676788876750287079579876641246899605430121
Q gi|254780869|r 2 KNEELVFLPLGGVGEIGMNMALYGYGSPSSRKWIMIDCGVSFPKDDLPGVDLVFPDITFIMKERKNLMAIFITHAHEDHY 81 (559)
Q Consensus 2 ~~~~i~~~~lGG~~eiG~N~~~~~~~~~~~~~~iiiD~G~~fp~~~~~gid~iiPd~~~l~~~~~~i~~i~iTH~H~DHi 81 (559)
++++++|+||||.+|||+||+++++ ++.+||+|||+.+..+.. + ..|+++++. .++|+||||||+|.||+
T Consensus 8 ~~~~~~i~~LGG~~eiG~sc~lv~~----~~~~illDcG~~~~~~~~---~-~~p~~~~~~--~~~idai~lTH~H~DH~ 77 (459)
T 2i7t_A 8 ESDQLLIRPLGAGQEVGRSCIILEF----KGRKIMLDCGIHPGLEGM---D-ALPYIDLID--PAEIDLLLISHFHLDHC 77 (459)
T ss_dssp -CEEEEEEEEESSSSSSSCEEEEEE----TTEEEEECCCCCTTSCGG---G-GSCCGGGSC--GGGCCEEECCCSSHHHH
T ss_pred CCCEEEEEECCCCCCCCCCEEEEEE----CCEEEEEECCCCCCCCCC---C-CCCCCCCCC--CCCCCEEEECCCHHHHH
T ss_conf 9984999982689864568999998----992999958899886520---0-267766678--22299999897858876
Q ss_pred CCHHHHHHHC--CCCEECCHHHHHHHHHHHHHCCCCCC-----------------CCEEEECCCCEEEECCEEEEEEECC
Q ss_conf 6078889862--99779299999999999985488655-----------------6225517555577634899998556
Q gi|254780869|r 82 GALHDLWSFL--HVPVYASPFAIGLLEAKRVYERVSKK-----------------IPCISFQAGDKVDVGAFSIESVRVN 142 (559)
Q Consensus 82 Galp~l~~~~--~~pIY~s~~t~~li~~~~~~~~~~~~-----------------~~~~~i~~~~~~~~g~~~v~~~~~~ 142 (559)
||||||+.+. +.|||+|++|.++++..+........ ..+..++.+++..+++++|++++++
T Consensus 78 g~Lp~l~~~~~~~~piy~t~~t~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~ag 157 (459)
T 2i7t_A 78 GALPWFLQKTSFKGRTFMTHATKAIYRWLLSDYVKVSNISADDMLYTETDLEESMDKIETINFHEVKEVAGIKFWCYHAG 157 (459)
T ss_dssp TTHHHHHHHSSCCSEEEEEHHHHHHHHHHHHHHCC---------CCCHHHHHHHGGGEEEECTTCCEEETTEEEEEEECC
T ss_pred CCHHHHHHHCCCCCCEEECHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCEEEECCCCEEEECCEEEEEEECC
T ss_conf 92799998648999888315279999988898775410343235677999997762458707995686087599998447
Q ss_pred CCCCCCCEEEEEECCCEEEECCCCEECCCCCCCCCCCHHHHHHCCCCCCEEEEECCCCCCCCCCCCC--HHHHHHHHHHH
Q ss_conf 7777653567987681799833402467766542389889986087882999963564578887777--87999999999
Q gi|254780869|r 143 HSIPETMALVIRSPVGNIVHTGDWKLDDDAILGDVTDKDSLCAIGNEGILALMCDSTNAMREGTCIS--EKGIKKNIYDI 220 (559)
Q Consensus 143 Hsip~a~~~~I~t~~g~i~ytGDfk~d~~p~~g~~~d~~~l~~~~~~gv~~Li~esT~~~~~~~~~s--E~~v~~~i~~~ 220 (559)
| +||++++.|++++++|+|||||+++.++..... .....++|+|++|||++.....+.+ |..+.+.+.+.
T Consensus 158 H-~~g~~~~~i~~~~~~i~ytGD~~~~~~~~l~~~-------~~~~~~~D~Li~est~~~~~~~~~~~~~~~l~~~i~~~ 229 (459)
T 2i7t_A 158 H-VLGAAMFMIEIAGVKLLYTGDFSRQEDRHLMAA-------EIPNIKPDILIIESTYGTHIHEKREEREARFCNTVHDI 229 (459)
T ss_dssp S-STTCEEEEEEETTEEEEECCSCCCC-----CCC-------CCCSSCCSEEEEECTTTTCCCCCHHHHHHHHHHHHHHH
T ss_pred C-CCCCEEEEEEECCEEEEECCCCCCCCCCCCCCC-------CCCCCCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHH
T ss_conf 7-678579999989998885588677786444565-------56776655899956777767897577999999999999
Q ss_pred HHHCCCCEEEEECHHHHHHHHHHHHHHHHH--------CCEEEEECHHHHHHHHHHHHC-CCCCC----------C---C
Q ss_conf 862798399994147789999999999871--------886998448699999988742-87677----------6---5
Q gi|254780869|r 221 MKNAKGCVLVTTFSSSVSRIRSIIDIAEQI--------GRKIVLLGSSLKRVVSVAIDV-GIIKK----------D---Q 278 (559)
Q Consensus 221 ~~~~~grViv~~fasni~Ri~~i~~~a~~~--------~R~v~i~Grs~~~~~~~a~~~-g~l~~----------~---~ 278 (559)
+++ .|+|++++|+ +.|.|+++....+. +..+++.+....+........ .+++. + .
T Consensus 230 ~~~-~g~vli~~~~--~gr~~eil~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 306 (459)
T 2i7t_A 230 VNR-GGRGLIPVFA--LGRAQELLLILDEYWQNHPELHDIPIYYASSLAKKCMAVYQTYVNAMNDKIRKQININNPFVFK 306 (459)
T ss_dssp HHT-TCEEEEECCS--SSSHHHHHHHHHHHHHHCGGGTTSCEEEC---------------------------------CC
T ss_pred HHC-CCCEEEEEEC--CCCHHHHHHHHHHHHHHCCCCCCCCEEECCHHHHHHHHHHHHHHHHHCHHHHHHHHCCCCCCCC
T ss_conf 864-9927999504--4219999999999987452457752795326899999999874765589999875025763223
Q ss_pred CCCCHHHHCCCC-CCCEEEEEECCCCCHHHHHHHHCCCCCCCCCCCCCCEEEEEEECCCCHHHHHH-HHHHHHHCCCEEE
Q ss_conf 422656622388-02089999669632688988520277765302689669999615886177899-9997651031134
Q gi|254780869|r 279 LFLSDESFGLYP-REQLIVIATGSQGEPRSALAQLSRGEMRNVKLAEKDTVIFSSRAIPGNEVAIG-HIKNRLVEQGVRV 356 (559)
Q Consensus 279 ~~i~~~~~~~~p-~~~~~ii~TGsqge~~a~l~ria~~~~~~i~l~~~D~vI~ss~~ipGnE~~~~-~~~n~l~~~g~~v 356 (559)
.+...+.....+ .+..+++++. +...+..++ .-++.+...+.|+++|+++++||+....- ..-+...+...+.
T Consensus 307 ~~~~~~~~~~~~~~~~~vi~~~~--~~l~~g~s~---~~~~~~~~~~~~~vi~sg~~~~g~~~~~l~~~~~~~~~~~~~~ 381 (459)
T 2i7t_A 307 HISNLKSMDHFDDIGPSVVMASP--GMMQSGLSR---ELFESWCTDKRNGVIIAGYCVEGTLAKHIMSEPEEITTMSGQK 381 (459)
T ss_dssp SEEECCCTTSSCCCSSEEEEESC--TTCSSHHHH---HHHHHHTTCTTCEEEECSCCCTTSHHHHHTTCCSEEECTTSCE
T ss_pred CEEEECCHHHHCCCCCEEEEECC--CCCCCCHHH---HHHHHHCCCCCCEEEECCCCCCCCHHHHHHCCCCEEEEECCCE
T ss_conf 20021124453156863999566--244762689---9998735788883997478578768887632662047625948
Q ss_pred EECCC-CCCEECCCCCCHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHH-CCCC-----CEEEECCCEEEEEC
Q ss_conf 30356-6641315788978999999754953999704577999999987874-4786-----31550032278973
Q gi|254780869|r 357 IAEDA-ECPVHVSGHPYPNDLKRMYQWIRPQVLVAIHGEPLHLVAHKELALQ-EGIA-----CVPPVRNGKMLRLF 425 (559)
Q Consensus 357 i~~~~-~~~iH~SGHa~~edl~~li~~ikPk~~IPvHGe~rhl~~h~~la~~-~gv~-----~i~l~~NGd~i~l~ 425 (559)
+.... -..+|+||||+++||++|++.+|||++||||||++|+..+++.+.+ .... .+++++||+.++|.
T Consensus 382 ~~~~~~v~~~~~SgHa~~~eL~~~i~~~~Pk~vipvHGe~~~~~~~~~~l~~~~~~~~~~~i~v~~p~nG~~v~l~ 457 (459)
T 2i7t_A 382 LPLKMSVDYISFSAHTDYQQTSEFIRALKPPHVILVHGEQNEMARLKAALIREYEDNDEVHIEVHNPRNTEAVTLN 457 (459)
T ss_dssp EECCSEEEECCCSCCCCHHHHHHHHHHHCCSEEEEESSCHHHHHHHHHHHHHHHSSCTTCCCEEECCCTTCCEEEE
T ss_pred EEEEEEEEEEEECCCCCHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCEEEEE
T ss_conf 8866599997643899999999999851999899976998999999999998704045566079878999889972