HHsearch results for GI: 254780869 and protein with PDBid: 2xr1_A
>2xr1_A Cleavage and polyadenylation specificity factor 1 subunit; hydrolase, metallo-beta-lactamase, beta-CAsp, RNA processing; 2.59A {Methanosarcina mazei}
Probab=100.00 E-value=0 Score=440.10 Aligned_cols=391 Identities=19% Similarity=0.294 Sum_probs=277.6
Q ss_pred CCCEEEEEECCCCCCCCCEEEEEEECCCCCCEEEEEECCCCCCCCCCCCEEEECCCHHHHHHHHHCCCEEEEECCCCCCC
Q ss_conf 88639999406868346606999951777864899977676788876750287079579876641246899605430121
Q gi|254780869|r 2 KNEELVFLPLGGVGEIGMNMALYGYGSPSSRKWIMIDCGVSFPKDDLPGVDLVFPDITFIMKERKNLMAIFITHAHEDHY 81 (559)
Q Consensus 2 ~~~~i~~~~lGG~~eiG~N~~~~~~~~~~~~~~iiiD~G~~fp~~~~~gid~iiPd~~~l~~~~~~i~~i~iTH~H~DHi 81 (559)
+++.++|+||||++|||+||+++++ ++.+||+|||++++.++.++.+..+|++.++ ++++||||||+|+||+
T Consensus 180 ~~~~irit~LGG~~EIGrsc~lv~~----~~~~ILlDcG~~~~~~~~~~~~~~~p~~~~l----~~iDAV~LTHaH~DH~ 251 (640)
T 2xr1_A 180 KDQWVRVTALGGCKEVGRSCFLLST----PESRILIDCGVNVGSDENMTPYLYVPEVFPL----NQIDAVIVTHAHLDHQ 251 (640)
T ss_dssp SCCCCEEEEEECSSSSBCCEEEEEC----SSCEEEECCCCBCSSCSSCCCCTTSTTTCSG----GGCCEEECCSSCHHHH
T ss_pred CCCEEEEEEECCCCCCCCCEEEEEE----CCCEEEEECCCCCCCCCCCCCCCCCCCCCCH----HHCCEEEECCCCHHHH
T ss_conf 9980899994788861527799996----8969999888887852335744355776873----0188999888976763
Q ss_pred CCHHHHHHH-CCCCEECCHHHHHHHHHHHHHC-------CCCCC----------CCEEEECCCCEEEEC-CEEEEEEECC
Q ss_conf 607888986-2997792999999999999854-------88655----------622551755557763-4899998556
Q gi|254780869|r 82 GALHDLWSF-LHVPVYASPFAIGLLEAKRVYE-------RVSKK----------IPCISFQAGDKVDVG-AFSIESVRVN 142 (559)
Q Consensus 82 Galp~l~~~-~~~pIY~s~~t~~li~~~~~~~-------~~~~~----------~~~~~i~~~~~~~~g-~~~v~~~~~~ 142 (559)
|+||||++. +++|||+|+.|+.|++..+.+. ..... ..+++++.+++++++ +|+|+|++++
T Consensus 252 G~Lp~L~k~g~~~PIY~T~~T~~L~~~ll~d~~~~~~~~~~~~~y~~~~i~~~~~~~i~l~y~e~~~i~~di~Vt~~~aG 331 (640)
T 2xr1_A 252 GLVPLLFKYGYEGPVYCTPPTRDLMVLLQLDYIDVAAKEGKKIPYESGMVAKTLKHTIPLDYEEVTDIAPDIKLTFHNAG 331 (640)
T ss_dssp TTHHHHHHTTCCSCEEECHHHHHHHHHHHHHHHHHHHHHTCCCCSCHHHHHHHHHTEEECCTTCCEEEETTEEEEEEECS
T ss_pred CCHHHHHHCCCCCCEEECHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHEEECCCCCEEEECCCCEEEEEECC
T ss_conf 86599985289988997779999999999999987664234688788999988850685589976995797179997268
Q ss_pred CCCCCCCEE-EEEECCCEEEECCCCEECCCCCCCCCCCHHHHHHCCCCCCEEEEECCCCCCCCCCCCC----HHHHHHHH
Q ss_conf 777765356-7987681799833402467766542389889986087882999963564578887777----87999999
Q gi|254780869|r 143 HSIPETMAL-VIRSPVGNIVHTGDWKLDDDAILGDVTDKDSLCAIGNEGILALMCDSTNAMREGTCIS----EKGIKKNI 217 (559)
Q Consensus 143 Hsip~a~~~-~I~t~~g~i~ytGDfk~d~~p~~g~~~d~~~l~~~~~~gv~~Li~esT~~~~~~~~~s----E~~v~~~i 217 (559)
||+++|+++ .|+++.++|+|||||+++..+..+...+ ....++.|++|+|+.......++ |..+.+.+
T Consensus 332 HslGsA~~~~~I~~g~~~IvyTGDfr~~~~~~l~~a~~-------~~~~~d~lIlesTyg~~~~~~~~~~~~e~~l~~~I 404 (640)
T 2xr1_A 332 HILGSAISHFHIGDGLHNVVFTGDYKYEKTRLFDPAVN-------KFPRVETVISEATYGNANAFQPALKDAEKHLQMVV 404 (640)
T ss_dssp SSTTCEEEEEEETTTTEEEEECCSCCSSCCSSCCCCCC-------BCSCCSEEEEECTTCSTTCCCCCHHHHHHHHHHHC
T ss_pred CCCCCCCEEEEEEECCEEEEECCCCCCCCCCCCCCCCC-------CHHHHHHHHEECCCCCCCCCCCCCHHHHHHHHHHH
T ss_conf 77865005789950882699737856676755586543-------01221222100123567767765110899999999
Q ss_pred HHHHHHCCCCEEEEECHHHHHHHHHHHHHHH---HHCC----EEEEECHHHHHHHHHHHHCCCCCCC----------CCC
Q ss_conf 9998627983999941477899999999998---7188----6998448699999988742876776----------542
Q gi|254780869|r 218 YDIMKNAKGCVLVTTFSSSVSRIRSIIDIAE---QIGR----KIVLLGSSLKRVVSVAIDVGIIKKD----------QLF 280 (559)
Q Consensus 218 ~~~~~~~~grViv~~fasni~Ri~~i~~~a~---~~~R----~v~i~Grs~~~~~~~a~~~g~l~~~----------~~~ 280 (559)
.+++++ .|+|++++|+ +.|.|+++.++. +.++ .+++.|..+..........+|++.. +.+
T Consensus 405 ~~tl~~-gg~VlIp~~a--~gR~qEI~~~l~~~~~~g~~~~~~v~~~g~i~~~~~~~~~~~~~l~~~~~~~~~~~~~npf 481 (640)
T 2xr1_A 405 KNTIER-GGIAVIPAFA--VGRSQEVMIVLEESIRKGLIPEVPVYLDGMIWEATAIHATHPEYLNNDLRKLIFQKGQNPF 481 (640)
T ss_dssp ---------CEEEECCT--TTHHHHHHHHHHHHHHHTSSCCCCEEEESSHHHHHHHHHHCGGGSCHHHHHHC------CT
T ss_pred HHHHHH-CCCEEEEEEC--HHHHHHHHHHHHHHHHHCCCCCCEEEEECHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCCC
T ss_conf 999982-9978998632--0369999999999997089877459993146788999996454339799998764344864
Q ss_pred -----------CCHHHHCCCCCCCEEEEEECCC---CCHHHHHHHHCCCCCCCCCCCCCCEEEEEEECCCCHHHHHHHHH
Q ss_conf -----------2656622388020899996696---32688988520277765302689669999615886177899999
Q gi|254780869|r 281 -----------LSDESFGLYPREQLIVIATGSQ---GEPRSALAQLSRGEMRNVKLAEKDTVIFSSRAIPGNEVAIGHIK 346 (559)
Q Consensus 281 -----------i~~~~~~~~p~~~~~ii~TGsq---ge~~a~l~ria~~~~~~i~l~~~D~vI~ss~~ipGnE~~~~~~~ 346 (559)
...+.+... .+..++++|..+ |.....+.+++ -.+.+++||++..+||+.- .++.
T Consensus 482 ~~~~~~~~~~~~~~~~i~~~-~~p~vilatsgml~~G~~~~~~~~l~--------~d~~n~vIftgy~a~gT~g--r~l~ 550 (640)
T 2xr1_A 482 LSECFKPVDSHEARQKIIQN-PQPCVILATSGMMNGGPVMEYFKAFA--------EDPRNTLVFVGYQADGTIG--RRIQ 550 (640)
T ss_dssp TCTTEEEEC-CHHHHHC-----CCCEEEESCTTSSSSHHHHHHHHHS--------SCTTCEEEECSCCCTTCHH--HHHH
T ss_pred CCCCCEECCCHHHHHHHHHC-CCCEEEEECCCCCCCCHHHHHHHHHC--------CCCCCEEEEECCCCCCCHH--HHHH
T ss_conf 33330314877879999747-89859995563345736999999954--------9999989997787899767--7512
Q ss_pred HHH------HCCCE-EEEECCCCCCE----ECCCCCCHHHHHHHHHHC--CCCEEEEECCCHHHHHHHHH-HHHHCCCCC
Q ss_conf 765------10311-34303566641----315788978999999754--95399970457799999998-787447863
Q gi|254780869|r 347 NRL------VEQGV-RVIAEDAECPV----HVSGHPYPNDLKRMYQWI--RPQVLVAIHGEPLHLVAHKE-LALQEGIAC 412 (559)
Q Consensus 347 n~l------~~~g~-~vi~~~~~~~i----H~SGHa~~edl~~li~~i--kPk~~IPvHGe~rhl~~h~~-la~~~gv~~ 412 (559)
+.. .+.+. +.+. ....+ |.||||+++||+.|++.+ ||+++||||||++++...++ +.++.|+ +
T Consensus 551 ~g~~~i~~~~~~~~~~~i~--v~~~V~~~~~fSGHAd~~eL~~~i~~v~prPk~VipvHGe~~~~~~la~~l~~~~~i-~ 627 (640)
T 2xr1_A 551 KGWKEIPMTGKNGSTEMLK--MNMEVQVVDGFSGHSDRRQLMEYVKRMQPRPERVFTEHGDEKACVDLASSVYKKLKI-E 627 (640)
T ss_dssp TTCCC-----------CCC--CCSEEEECCCCSCSCCHHHHHHHHHTCBSCCSEEEEESSCHHHHHHHHHHHHHHHCC-E
T ss_pred CCCCEEHHHHHCCCCEEEE--EEEEEEECCCCCCCCCHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHCC-C
T ss_conf 2442402676447742686--457898688617997999999999966136999999839989999999999998599-6
Q ss_pred EEEECCCEEEEE
Q ss_conf 155003227897
Q gi|254780869|r 413 VPPVRNGKMLRL 424 (559)
Q Consensus 413 i~l~~NGd~i~l 424 (559)
+.+++|||.++|
T Consensus 628 ~~~p~nge~i~l 639 (640)
T 2xr1_A 628 TRALTNLETVRL 639 (640)
T ss_dssp EEECCTTCEEEC
T ss_pred EEECCCCCEEEE
T ss_conf 888899998984