PSIBLAST alignment of GI: 254780869 and protein with PDB id: 3af5
gi|294979445|pdb|3AF5|A Chain A, The Crystal Structure Of An Archaeal Cpsf Subunit, Ph1404 From Pyrococcus Horikoshii Length = 651
>gi|294979446|pdb|3AF6|A Chain A, The Crystal Structure Of An Archaeal Cpsf Subunit, Ph1404 From Pyrococcus Horikoshii Complexed With Rna-Analog Length = 651
Score = 112 bits (281), Expect = 1e-22, Method: Composition-based stats.
Identities = 81/475 (17%), Positives = 165/475 (34%), Gaps = 80/475 (16%)
Query: 2 KNEELVFLPLGGVGEIGMNMALYGYGSPSSRKWIMIDCGVSF-----PKDDLPGVDLVFP 56
K+ + LGG E+G + L + ++++D GV+ P P D P
Sbjct: 185 KSRWIRITGLGGFREVGRSALLV----QTDESFVLVDFGVNVAMLNDPYKAFPHFDA--P 238
Query: 57 DITFIMKERKNLMAIFITHAHEDHYGALHDLWSF--LHVPVYASPFA---IGLLEAKRVY 111
+ +++ L AI ITHAH DH G L L+ + P+Y +P + LL+ +
Sbjct: 239 EFQYVL-REGLLDAIIITHAHLDHCGMLPYLFRYNLFDGPIYTTPPTRDLMVLLQKDFIE 297
Query: 112 ERVSKKI--------------PCISFQAGDKVDVGA-FSIESVRVNHSIPETMAL-VIRS 155
+ S I+ G+ D+ + H + + I +
Sbjct: 298 IQQSNGQDPLYRPRDIKEVIKHTITLDYGEVRDISPDIRLTLHNAGHILGSAIVHLHIGN 357
Query: 156 PVGNIVHTGDWKLDDDAILGDVTDKDSLCAIGNEGILALMCDSTNAMREGTCISEKGIKK 215
+ NI TGD+K +L + L+ +ST + + +K
Sbjct: 358 GLHNIAITGDFKFIPTRLLEPAN--AKFPRL-----ETLVMESTYGGANDIQMPREEAEK 410
Query: 216 NIYDIMKNA---KGCVLVTTFSSSVSRIRSIIDIAEQI----GRKIVLLGSSLK---RVV 265
+ +++ N G VL+ + V R + ++ + E+ G ++ + + +
Sbjct: 411 RLIEVIHNTIKRGGKVLIPAMA--VGRAQEVMMVLEEYARIGGIEVPIYLDGMIWEATAI 468
Query: 266 SVAIDVGIIKKDQLFLSDESFGLY----------PREQLIVIATGSQGEPRSALAQLSRG 315
A + ++ + + E + + RE+ +I + ++ L G
Sbjct: 469 HTAYPEYLSRRLREQIFKEGYNPFLSEIFHPVANSRERQDIIDSNEPAIIIASSGMLVGG 528
Query: 316 ----EMRNVKLAEKDTVIFSSRAIPGN-------EVAIGHIKNRLVEQGVRVIAEDAECP 364
+ + K+++IF S G + + V + +
Sbjct: 529 PSVEYFKQLAPDPKNSIIFVSYQAEGTLGRQVQSGIREIPMVGEEGRTEVIKVNMEVHTI 588
Query: 365 VHVSGHPYPNDLKRMYQWIRPQ--VLVAIHGEPLHL-----VAHKELALQEGIAC 412
SGH +L +RP+ ++ +HGEP H++ +
Sbjct: 589 DGFSGHADRRELMNYVAKVRPRPERIITVHGEPQKCLDLATSIHRKFGISTRAPN 643