RPSBLAST alignment for GI: 254780869 and conserved domain: COG1236

>gnl|CDD|31429 COG1236, YSH1, Predicted exonuclease of the beta-lactamase fold involved in RNA processing [Translation, ribosomal structure and biogenesis]. Length = 427

 Score = 75.5 bits (185), Expect = 3e-14
 Identities = 93/439 (21%), Positives = 161/439 (36%), Gaps = 62/439 (14%)

Query: 6   LVFLPLGGVGEIGMNMALYGYGSPSSRKWIMIDCGVSFPKDDLPGVDLVFPDITFIMKER 65
           +    LG   E+G +  L   G       I++DCG+                   ++   
Sbjct: 1   MTLRFLGAAREVGRSCVLLETGGTR----ILLDCGLFPGDPS---------PERPLLPPF 47

Query: 66  KNLMAIFITHAHEDHYGALHDLWS-FLHVPVYASPFAIGLLE------------------ 106
             + A+ +THAH DH GAL  L       PVYA+P    LL+                  
Sbjct: 48  PKVDAVLLTHAHLDHIGALPYLVRNGFEGPVYATPPTAALLKVLLGDSLKLAEGPDKPPY 107

Query: 107 AKRVYERVSKKIPCISFQAGDKVDVGAFSIESVRVNHSIPETMALVIRSPVGNIVHTGDW 166
           ++   ERV   I  + +  G+ V+VG   +      H I  + A+++    G I++TGD 
Sbjct: 108 SEEDVERVPDLIRPLPY--GEPVEVGGVKVTFYNAGH-ILGSAAILLEVDGGRILYTGDV 164

Query: 167 KLDDDAILGDVTDKDSLCAIGNEGILALMCDSTNAMREGTCISEKGIKKNIYDIMKNA-- 224
           K   D +L          A     I  L+ +ST   R      E   ++   + +K A  
Sbjct: 165 KRRKDRLLN--------GAELPPCIDVLIVESTYGDRLHPNRDEV--ERRFIESVKAALE 214

Query: 225 -KGCVLVTTFSSSVSRIRSIIDIAEQIGRKI---VLLGSSLKRVVSVAID--VGIIKKDQ 278
             G VL+  F  ++ R + ++ I  ++G      + +   + RV        +G+   D 
Sbjct: 215 RGGTVLIPAF--ALGRAQELLLILRELGFAGDYPIYVDGPIARVALAYAKYPIGLDLPDL 272

Query: 279 LFLSDESFG--LYPREQLIVIATGSQGEPRSALAQLSRGEMRNVKLA----EKDTVIFSS 332
           L +++  F      R  +            +A   L  G  R         EK+ V+   
Sbjct: 273 LKVAESRFRFVESRRNSMREGIDKGPAVVLAAPGMLKGGRSRYYLKHLLSDEKNWVLLPG 332

Query: 333 RAIPG-NEVAIGHIKNRLVEQGVRVIAEDAECPVHVSGHPYPNDLKRMYQWIRPQVLVAI 391
               G     +      +  +G+ +  +     +  S H   ++L    + I P  +V +
Sbjct: 333 YQAEGTLGRVLLEGGTSVHIKGIEIKVKARVEELDFSAHADGDELLEFIKDISPPKVVLV 392

Query: 392 HGEPLHLVAHKELALQEGI 410
           HGEP +  A +   L+E I
Sbjct: 393 HGEPEYGAALRARLLEELI 411