RPSBLAST alignment of GI: 254780869 and protein with PDBid: 2xr1
>2xr1_A Cleavage and polyadenylation specificity factor 1 subunit; hydrolase, metallo-beta-lactamase, beta-CAsp, RNA processing; 2.59A {Methanosarcina mazei} Length = 640
Score = 215 bits (548), Expect = 2e-56
Identities = 76/473 (16%), Positives = 152/473 (32%), Gaps = 63/473 (13%)
Query: 2 KNEELVFLPLGGVGEIGMNMALYGYGSPSSRKWIMIDCGVSFPKDDLPGVDLVFPDITFI 61
K++ + LGG E+G + L I+IDCGV+ D+ L P++ +
Sbjct: 180 KDQWVRVTALGGCKEVGRSCFLLSTPE----SRILIDCGVNVGSDENMTPYLYVPEVFPL 235
Query: 62 MKERKNLMAIFITHAHEDHYGALHDLWS-FLHVPVYASPFAIGLLEAK-----RVYERVS 115
+ A+ +THAH DH G + L+ PVY +P L+ V +
Sbjct: 236 ----NQIDAVIVTHAHLDHQGLVPLLFKYGYEGPVYCTPPTRDLMVLLQLDYIDVAAKEG 291
Query: 116 KKIP------------CISFQAGDKVDVG-AFSIESVRVNHSIPETMALV-IRSPVGNIV 161
KKIP I + D+ + H + ++ I + N+V
Sbjct: 292 KKIPYESGMVAKTLKHTIPLDYEEVTDIAPDIKLTFHNAGHILGSAISHFHIGDGLHNVV 351
Query: 162 HTGDWKLDDDAILGDVTDKDSLCAIGNEGILALMCDSTNAMREGTCISEKGIKKNIYDIM 221
TGD+K + + +K I + NA + +EK ++ + + +
Sbjct: 352 FTGDYKYEKTRLFDPAVNK---FPRVETVISEATYGNANAFQPALKDAEKHLQMVVKNTI 408
Query: 222 KNAKGCVLVTTFSSSVSRIRSIIDIAEQIGR----KIVLLGSSLKRVVSVAIDVGIIKKD 277
+ V+ + +++ + + G + L G + A + D
Sbjct: 409 ERGGIAVIPAFAVGRSQEVMIVLEESIRKGLIPEVPVYLDGMIWEATAIHATHPEYLNND 468
Query: 278 -QLFLSDESFGLYPREQLIVIATGSQGE--------------PRSALAQLSRGEMRNVKL 322
+ + + + E + + + +
Sbjct: 469 LRKLIFQKGQNPFLSECFKPVDSHEARQKIIQNPQPCVILATSGMMNGGPVMEYFKAFAE 528
Query: 323 AEKDTVIFSSRAIPGNEVA--------IGHIKNRLVEQGVRVIAEDAECPVHVSGHPYPN 374
++T++F G I + +++ E + SGH
Sbjct: 529 DPRNTLVFVGYQADGTIGRRIQKGWKEIPMTGKNGSTEMLKMNME-VQVVDGFSGHSDRR 587
Query: 375 DLKRMYQWI--RPQVLVAIHGEPLHLVAHKE-LALQEGIACVPPVRNGKMLRL 424
L + + RP+ + HG+ V + + I N + +RL
Sbjct: 588 QLMEYVKRMQPRPERVFTEHGDEKACVDLASSVYKKLKIETRAL-TNLETVRL 639