RPSBLAST alignment of GI: 254780869 and protein with PDBid: 3af5

>3af5_A Putative uncharacterized protein PH1404; archaeal CPSF, beta-CAsp family, KH domain, ribonuclease, ME beta-lactamase superfamily, archaea; 2.60A {Pyrococcus horikoshii} PDB: 3af6_A* Length = 651

 Score =  200 bits (509), Expect = 8e-52
 Identities = 85/481 (17%), Positives = 164/481 (34%), Gaps = 73/481 (15%)

Query: 2   KNEELVFLPLGGVGEIGMNMALYGYGSPSSRKWIMIDCGVSFPKDDLP---GVDLVFPDI 58
           K+  +    LGG  E+G +  L          ++++D GV+    + P         P+ 
Sbjct: 185 KSRWIRITGLGGFREVGRSALLVQTD----ESFVLVDFGVNVAMLNDPYKAFPHFDAPEF 240

Query: 59  TFIMKERKNLMAIFITHAHEDHYGALHDLWS--FLHVPVYASPFAIGLLEAK-------- 108
            ++++E   L AI ITHAH DH G L  L+       P+Y +P    L+           
Sbjct: 241 QYVLREGL-LDAIIITHAHLDHCGMLPYLFRYNLFDGPIYTTPPTRDLMVLLQKDFIEIQ 299

Query: 109 -----------RVYERVSKKIPCISFQAGDKVDVGA-FSIESVRVNHSIPETMALV-IRS 155
                      R  + V K    + +  G+  D+     +      H +   +  + I +
Sbjct: 300 QSNGQDPLYRPRDIKEVIKHTITLDY--GEVRDISPDIRLTLHNAGHILGSAIVHLHIGN 357

Query: 156 PVGNIVHTGDWKLDDDAILGDVTDKDSLCAIGNEGILALMCDSTNAMREGTCISEKGIKK 215
            + NI  TGD+K     +L           +    + +    + +        +EK + +
Sbjct: 358 GLHNIAITGDFKFIPTRLLEP--ANAKFPRLETLVMESTYGGANDIQMPREE-AEKRLIE 414

Query: 216 NIYDIMKNAKGCVLVTTFSSSVSRIRSIIDIAEQIGRKIVLLGSSLKRVVSVAIDVGIIK 275
            I++ +K   G VL+     +V R + ++ + E+  R   +        +          
Sbjct: 415 VIHNTIKR-GGKVLIPAM--AVGRAQEVMMVLEEYARIGGIEVPIYLDGMIWEATAIHTA 471

Query: 276 ----------------KDQLFLSDESFGLYPREQLIVIATGSQGE-----PRSALAQLSR 314
                               FLS+    +    +   I   ++           +   S 
Sbjct: 472 YPEYLSRRLREQIFKEGYNPFLSEIFHPVANSRERQDIIDSNEPAIIIASSGMLVGGPSV 531

Query: 315 GEMRNVKLAEKDTVIFSSRAIPGNE----VAIGHIKNRLVEQGVRVIAEDAECPVHV--- 367
              + +    K+++IF S    G       +       + E+G   + +     VH    
Sbjct: 532 EYFKQLAPDPKNSIIFVSYQAEGTLGRQVQSGIREIPMVGEEGRTEVIK-VNMEVHTIDG 590

Query: 368 -SGHPYPNDLKRMYQWI--RPQVLVAIHGEPLHLVAHKE-LALQEGIACVPPVRNGKMLR 423
            SGH    +L      +  RP+ ++ +HGEP   +     +  + GI+   P  N   +R
Sbjct: 591 FSGHADRRELMNYVAKVRPRPERIITVHGEPQKCLDLATSIHRKFGISTRAP-NNLDTIR 649

Query: 424 L 424
           L
Sbjct: 650 L 650