RPS-BLAST 2.2.22 [Sep-27-2009]

Database: pdb70 
           24,244 sequences; 5,693,230 total letters

Searching..................................................done

Query= gi|254780869|ref|YP_003065282.1| beta-lactamase
domain-containing protein [Candidatus Liberibacter asiaticus str.
psy62]
         (559 letters)



>3bk2_A RNAse J, metal dependent hydrolase; endoribonuclease,
           exoribonuclease, metallo-beta-lactamase; HET: U5P; 2.10A
           {Thermus thermophilus HB27} PDB: 3bk1_A*
          Length = 562

 Score =  357 bits (916), Expect = 4e-99
 Identities = 175/560 (31%), Positives = 286/560 (51%), Gaps = 22/560 (3%)

Query: 2   KNEELVFLPLGGVGEIGMNMALYGYGSPSSRKWIMIDCGVSFPKDDLPGVDLVFPDITFI 61
             + +  +PLGG+GEIG N+ ++ +      +  ++D G++FP++ +PGVDL+ P + ++
Sbjct: 13  PQDHVEIIPLGGMGEIGKNITVFRFR----DEIFVLDGGLAFPEEGMPGVDLLIPRVDYL 68

Query: 62  MKERKNLMAIFITHAHEDHYGALHDLWSFLH-----VPVYASPFAIGLLEAKRVYERVSK 116
           ++ R  + A  +TH HEDH G L  L   +      VP+Y +   +GLL  K     +  
Sbjct: 69  IEHRHKIKAWVLTHGHEDHIGGLPFLLPMIFGKESPVPIYGARLTLGLLRGKLEEFGLRP 128

Query: 117 K-IPCISFQAGDKVDVGA-FSIESVRVNHSIPETMALVIRSPVGNIVHTGDWKLDDDAIL 174
                      D++ VG  F+++  R+ HSIP+   +VIR+P+G IVHTGD+KLD   I 
Sbjct: 129 GAFNLKEISPDDRIQVGRYFTLDLFRMTHSIPDNSGVVIRTPIGTIVHTGDFKLDPTPID 188

Query: 175 GDVTDKDSLCAIGNEGILALMCDSTNAMREGTCISEKGIKKNIYDIMKNAKGCVLVTTFS 234
           G V+    +   G EG+L L+ D+TNA R G   SE  I K +  ++  A G V VTTF+
Sbjct: 189 GKVSHLAKVAQAGAEGVLLLIADATNAERPGYTPSEMEIAKELDRVIGRAPGRVFVTTFA 248

Query: 235 SSVSRIRSIIDIAEQIGRKIVLLGSSLKRVVSVAIDVGIIKKDQLFLSDESFGLYPREQL 294
           S + RI+S+I  AE+ GRK+ + G S+ +   +A+++G +K      + E     P  Q+
Sbjct: 249 SHIHRIQSVIWAAEKYGRKVAMEGRSMLKFSRIALELGYLKVKDRLYTLEEVKDLPDHQV 308

Query: 295 IVIATGSQGEPRSALAQLSRGEMRNVKLAEKDTVIFSSRAIPGNEVAIGHIKNRLVEQGV 354
           +++ATGSQG+P S L +L+      + +   DTVI SS  IPGNE A+  + NRL   G 
Sbjct: 309 LILATGSQGQPMSVLHRLAFEGHAKMAIKPGDTVILSSSPIPGNEEAVNRVINRLYALGA 368

Query: 355 RVIAEDAECPVHVSGHPYPNDLKRMYQWIRPQVLVAIHGEPLHLVAHKELALQEGIACVP 414
            V+        H SGH    +LK +     P+  +  HGE  H +  K LA         
Sbjct: 369 YVLYPPTYKV-HASGHASQEELKLILNLTTPRFFLPWHGEVRHQMNFKWLAESMSRPPEK 427

Query: 415 PV--RNGKMLRLFPDPIEIIDEVVHGLFLKDGFLIGKFADLGIAKRRQLSFVGHLSVNVL 472
            +   NG + RL  +  E + EV HG+   DG  +G   +  +A RR ++  G + +  L
Sbjct: 428 TLIGENGAVYRLTRETFEKVGEVPHGVLYVDGLGVGDITEEILADRRHMAEEGLVVITAL 487

Query: 473 LDNHYNIFGVPEIVDIGIPAYDGDGGKIHKLLLKTVITTVVDLPQFRRKDLKLLRESISS 532
                    V E+V  G       G ++   + +  +  + +  +  +K L+ +R+ I  
Sbjct: 488 AGED----PVVEVVSRGFVK---AGERLLGEVRRMALEALKNGVR-EKKPLERIRDDIYY 539

Query: 533 ALRSLLKKVWGKKPLVTVFI 552
            ++  LKK  G+ P++   +
Sbjct: 540 PVKKFLKKATGRDPMILPVV 559


>2xr1_A Cleavage and polyadenylation specificity factor 1 subunit;
           hydrolase, metallo-beta-lactamase, beta-CAsp, RNA
           processing; 2.59A {Methanosarcina mazei}
          Length = 640

 Score =  215 bits (548), Expect = 2e-56
 Identities = 76/473 (16%), Positives = 152/473 (32%), Gaps = 63/473 (13%)

Query: 2   KNEELVFLPLGGVGEIGMNMALYGYGSPSSRKWIMIDCGVSFPKDDLPGVDLVFPDITFI 61
           K++ +    LGG  E+G +  L           I+IDCGV+   D+     L  P++  +
Sbjct: 180 KDQWVRVTALGGCKEVGRSCFLLSTPE----SRILIDCGVNVGSDENMTPYLYVPEVFPL 235

Query: 62  MKERKNLMAIFITHAHEDHYGALHDLWS-FLHVPVYASPFAIGLLEAK-----RVYERVS 115
                 + A+ +THAH DH G +  L+      PVY +P    L+         V  +  
Sbjct: 236 ----NQIDAVIVTHAHLDHQGLVPLLFKYGYEGPVYCTPPTRDLMVLLQLDYIDVAAKEG 291

Query: 116 KKIP------------CISFQAGDKVDVG-AFSIESVRVNHSIPETMALV-IRSPVGNIV 161
           KKIP             I     +  D+     +      H +   ++   I   + N+V
Sbjct: 292 KKIPYESGMVAKTLKHTIPLDYEEVTDIAPDIKLTFHNAGHILGSAISHFHIGDGLHNVV 351

Query: 162 HTGDWKLDDDAILGDVTDKDSLCAIGNEGILALMCDSTNAMREGTCISEKGIKKNIYDIM 221
            TGD+K +   +     +K          I      + NA +     +EK ++  + + +
Sbjct: 352 FTGDYKYEKTRLFDPAVNK---FPRVETVISEATYGNANAFQPALKDAEKHLQMVVKNTI 408

Query: 222 KNAKGCVLVTTFSSSVSRIRSIIDIAEQIGR----KIVLLGSSLKRVVSVAIDVGIIKKD 277
           +     V+          +  +++ + + G      + L G   +     A     +  D
Sbjct: 409 ERGGIAVIPAFAVGRSQEVMIVLEESIRKGLIPEVPVYLDGMIWEATAIHATHPEYLNND 468

Query: 278 -QLFLSDESFGLYPREQLIVIATGSQGE--------------PRSALAQLSRGEMRNVKL 322
            +  +  +    +  E    + +    +                           +    
Sbjct: 469 LRKLIFQKGQNPFLSECFKPVDSHEARQKIIQNPQPCVILATSGMMNGGPVMEYFKAFAE 528

Query: 323 AEKDTVIFSSRAIPGNEVA--------IGHIKNRLVEQGVRVIAEDAECPVHVSGHPYPN 374
             ++T++F      G            I         + +++  E  +     SGH    
Sbjct: 529 DPRNTLVFVGYQADGTIGRRIQKGWKEIPMTGKNGSTEMLKMNME-VQVVDGFSGHSDRR 587

Query: 375 DLKRMYQWI--RPQVLVAIHGEPLHLVAHKE-LALQEGIACVPPVRNGKMLRL 424
            L    + +  RP+ +   HG+    V     +  +  I       N + +RL
Sbjct: 588 QLMEYVKRMQPRPERVFTEHGDEKACVDLASSVYKKLKIETRAL-TNLETVRL 639


>2az4_A Hypothetical protein EF2904; structural genomics, PSI, protein
           structure initiative, midwest center for structural
           genomics, MCSG; 2.00A {Enterococcus faecalis V583} SCOP:
           d.157.1.10
          Length = 429

 Score =  206 bits (524), Expect = 1e-53
 Identities = 82/430 (19%), Positives = 144/430 (33%), Gaps = 61/430 (14%)

Query: 10  PLGGVGEIGMNMALYGYGSPSSRKWIMIDCGVSF------PKDDLPGV----------DL 53
              G+  IG  +    Y        I  D G  F      P D +  +          DL
Sbjct: 11  FHSGILTIGGTVIEVAYKD----AHIFFDFGTEFRPELDLPDDHIETLINNRLVPELKDL 66

Query: 54  VFPDIT----FIMKERKNLMAIFITHAHEDHYGALHDLWSFLHVPVYASPFAIGLLEAKR 109
             P +         +     A+F++HAH DH   ++ L     VP+Y       +L +  
Sbjct: 67  YDPRLGYEYHGAEDKDYQHTAVFLSHAHLDHSRMINYLDP--AVPLYTLKETKMILNSLN 124

Query: 110 V---------YERVSKKIPCISFQAGDKVDVGAFSIESVRVNHSIPETMALVIRSPVGNI 160
                     +E  +     I     D + VG  S+E V V+H      AL+IR+P   I
Sbjct: 125 RKGDFLIPSPFEEKNFTREMIGLNKNDVIKVGEISVEIVPVDHDAYGASALLIRTPDHFI 184

Query: 161 VHTGDWKLDD---DAILGDVTDKDSLCAIGNEGILALMCDSTNAMREGTCISEKGIKKNI 217
            +TGD +L     +  L           +  EG+     +      +   +SE+ + +++
Sbjct: 185 TYTGDLRLHGHNREETLAFCEKAKHTELLMMEGVSISFPEREPDPAQIAVVSEEDLVQHL 244

Query: 218 YDIM-KNAKGCVLVTTFSSSVSRIRSIIDIAEQIGRKIVLLGSSLKRVVSVA--IDVGII 274
             +  +N    +    + ++V R   II+ +    R +VL  +    ++ V         
Sbjct: 245 VRLELENPNRQITFNGYPANVERFAKIIEKS---PRTVVLEANMAALLLEVFGIEVRYYY 301

Query: 275 KKDQLFLSDESFGLYPREQLIVIATGSQGEPRSALAQLSRGEMRNVKLAEKDTVIFSSRA 334
            +             P + L+   T    +  +              L E    I S   
Sbjct: 302 AESGKIPELNPALEIPYDTLLKDKTDYLWQVVNQ----------FDNLQEGSLYIHSDAQ 351

Query: 335 IPGNEVAIG-HIKNRLVEQGVRVIAEDAECPVHVSGHPYPNDLKRMYQWIRPQVLVAIHG 393
             G+         + L ++ +  +       +  SGH  P DL ++   I PQVLV IH 
Sbjct: 352 PLGDFDPQYRVFLDLLAKKDITFVR------LACSGHAIPEDLDKIIALIEPQVLVPIHT 405

Query: 394 EPLHLVAHKE 403
                + +  
Sbjct: 406 LKPEKLENPY 415


>3af5_A Putative uncharacterized protein PH1404; archaeal CPSF, beta-CAsp
           family, KH domain, ribonuclease, ME beta-lactamase
           superfamily, archaea; 2.60A {Pyrococcus horikoshii} PDB:
           3af6_A*
          Length = 651

 Score =  200 bits (509), Expect = 8e-52
 Identities = 85/481 (17%), Positives = 164/481 (34%), Gaps = 73/481 (15%)

Query: 2   KNEELVFLPLGGVGEIGMNMALYGYGSPSSRKWIMIDCGVSFPKDDLP---GVDLVFPDI 58
           K+  +    LGG  E+G +  L          ++++D GV+    + P         P+ 
Sbjct: 185 KSRWIRITGLGGFREVGRSALLVQTD----ESFVLVDFGVNVAMLNDPYKAFPHFDAPEF 240

Query: 59  TFIMKERKNLMAIFITHAHEDHYGALHDLWS--FLHVPVYASPFAIGLLEAK-------- 108
            ++++E   L AI ITHAH DH G L  L+       P+Y +P    L+           
Sbjct: 241 QYVLREGL-LDAIIITHAHLDHCGMLPYLFRYNLFDGPIYTTPPTRDLMVLLQKDFIEIQ 299

Query: 109 -----------RVYERVSKKIPCISFQAGDKVDVGA-FSIESVRVNHSIPETMALV-IRS 155
                      R  + V K    + +  G+  D+     +      H +   +  + I +
Sbjct: 300 QSNGQDPLYRPRDIKEVIKHTITLDY--GEVRDISPDIRLTLHNAGHILGSAIVHLHIGN 357

Query: 156 PVGNIVHTGDWKLDDDAILGDVTDKDSLCAIGNEGILALMCDSTNAMREGTCISEKGIKK 215
            + NI  TGD+K     +L           +    + +    + +        +EK + +
Sbjct: 358 GLHNIAITGDFKFIPTRLLEP--ANAKFPRLETLVMESTYGGANDIQMPREE-AEKRLIE 414

Query: 216 NIYDIMKNAKGCVLVTTFSSSVSRIRSIIDIAEQIGRKIVLLGSSLKRVVSVAIDVGIIK 275
            I++ +K   G VL+     +V R + ++ + E+  R   +        +          
Sbjct: 415 VIHNTIKR-GGKVLIPAM--AVGRAQEVMMVLEEYARIGGIEVPIYLDGMIWEATAIHTA 471

Query: 276 ----------------KDQLFLSDESFGLYPREQLIVIATGSQGE-----PRSALAQLSR 314
                               FLS+    +    +   I   ++           +   S 
Sbjct: 472 YPEYLSRRLREQIFKEGYNPFLSEIFHPVANSRERQDIIDSNEPAIIIASSGMLVGGPSV 531

Query: 315 GEMRNVKLAEKDTVIFSSRAIPGNE----VAIGHIKNRLVEQGVRVIAEDAECPVHV--- 367
              + +    K+++IF S    G       +       + E+G   + +     VH    
Sbjct: 532 EYFKQLAPDPKNSIIFVSYQAEGTLGRQVQSGIREIPMVGEEGRTEVIK-VNMEVHTIDG 590

Query: 368 -SGHPYPNDLKRMYQWI--RPQVLVAIHGEPLHLVAHKE-LALQEGIACVPPVRNGKMLR 423
            SGH    +L      +  RP+ ++ +HGEP   +     +  + GI+   P  N   +R
Sbjct: 591 FSGHADRRELMNYVAKVRPRPERIITVHGEPQKCLDLATSIHRKFGISTRAP-NNLDTIR 649

Query: 424 L 424
           L
Sbjct: 650 L 650


>2zdf_A Metallo-beta-lactamase superfamily protein; metallo beta lactmase
           fold, structural genomics, NPPSFA; HET: FLC; 2.50A
           {Thermus thermophilus} PDB: 3idz_A* 2dkf_A 2zdd_A*
           3ie0_A* 2zde_A* 3ie1_A* 2zdw_A* 3a4y_A* 2yvd_A* 3ie2_A*
          Length = 431

 Score =  164 bits (416), Expect = 4e-41
 Identities = 77/454 (16%), Positives = 151/454 (33%), Gaps = 62/454 (13%)

Query: 8   FLPLGGVGEIGMNMALYGYGSPSSRKWIMIDCGVSFPKDDLPGVDLVFPDITFIMKERKN 67
            +P G   E+  +  L   G     + +++DCG+   K++            F  KE   
Sbjct: 3   IVPFGAAREVTGSAHLLLAGG----RRVLLDCGMFQGKEEARN----HAPFGFDPKEVD- 53

Query: 68  LMAIFITHAHEDHYGALHDLW-SFLHVPVYASPFAIGLLEAKRVYERVSKKIPCIS---- 122
             A+ +THAH DH G L  L+      PVYA+   + L+E            P       
Sbjct: 54  --AVLLTHAHLDHVGRLPKLFREGYRGPVYATRATVLLMEIVLEDALKVMDEPFFGPEDV 111

Query: 123 ---------FQAGDKVDVGAFSIESVRVNHSIPETMALVIRSPVGNIVHTGDWKLDDDAI 173
                     + G+ + +GA S+   +  H +P +  +V +     +V++GD    +  +
Sbjct: 112 EEALGHLRPLEYGEWLRLGALSLAFGQAGH-LPGSAFVVAQGEGRTLVYSGDLGNREKDV 170

Query: 174 LGDVTDKDSLCAIGNEGILALMCDSTNAMREGTCISEKGIKKNIYDIMKNAKGCVLVTTF 233
           L D +            ++       +        + +   + +   +    G VL+ TF
Sbjct: 171 LPDPSLPP------LADLVLAEGTYGDRPHRPYRETVREFLEILEKTLSQ-GGKVLIPTF 223

Query: 234 SSSVSRIRSIIDIAEQIGRK-----IVLLGSSLKRVVSVA----------IDVGIIKKDQ 278
             +V R + I+ +    G +     I L      RV+S+           +    ++   
Sbjct: 224 --AVERAQEILYVLYTHGHRLPRAPIYLDSPMAGRVLSLYPRLVRYFSEEVQAHFLQGKN 281

Query: 279 LFLSDESFGLYPREQLIVIATGSQGE-----PRSALAQLSRGEMRNVKLAEKDTVIFSSR 333
            F       +   E    +                        +++     ++ ++F   
Sbjct: 282 PFRPAGLEVVEHTEASKALNRAPGPMVVLAGSGMLAGGRILHHLKHGLSDPRNALVFVGY 341

Query: 334 AIPG---NEVAIGHIKNRLVEQGVRVIAEDAECPVHVSGHPYPNDLKRMYQWIRPQVLVA 390
              G    E+       R++ + V + A          GH   ++L    Q      +V 
Sbjct: 342 QPQGGLGAEIIARPPAVRILGEEVPLRAS-VHTLGGFQGHAGQDELLDWLQ--GEPRVVL 398

Query: 391 IHGEPLHLVAHKELALQEGIACVPPVRNGKMLRL 424
           +HGE   L+A  +L    G       R G+ + +
Sbjct: 399 VHGEEEKLLALGKLLALRGQEVSLA-RFGEGVPV 431


>2i7t_A Cleavage and polyadenylation specificity factor 73 kDa subunit;
           metallo-B-lactamase, PRE-mRNA processing, artemis, V(D)J
           recombination; 2.10A {Homo sapiens} SCOP: d.157.1.10
           PDB: 2i7v_A
          Length = 459

 Score =  145 bits (365), Expect = 3e-35
 Identities = 66/467 (14%), Positives = 144/467 (30%), Gaps = 62/467 (13%)

Query: 2   KNEELVFLPLGGVGEIGMNMALYGYGSPSSRKWIMIDCGVSFPKDDLPGVDLVFPDITFI 61
           ++++L+  PLG   E+G +  +  +      + IM+DCG+    + +       P I  I
Sbjct: 8   ESDQLLIRPLGAGQEVGRSCIILEFKG----RKIMLDCGIHPGLEGMD----ALPYIDLI 59

Query: 62  MKERKNLMAIFITHAHEDHYGALHDLWS--FLHVPVYASPFAIGLLEAK-RVYERVSKKI 118
             +   +  + I+H H DH GAL             + +     +       Y +VS   
Sbjct: 60  --DPAEIDLLLISHFHLDHCGALPWFLQKTSFKGRTFMTHATKAIYRWLLSDYVKVSNIS 117

Query: 119 PCISFQAGDKVDVGAFSIESVRVNHSIPETMALVIRSPVGNIVHTGDWKLDDDAILGDVT 178
                     ++     IE++  +               G+++    + ++   +    T
Sbjct: 118 ADDMLYTETDLEESMDKIETINFHEVKEVAGIKFWCYHAGHVLGAAMFMIEIAGVKLLYT 177

Query: 179 DKDSL--------CAIGNEGILALMCDSTNAMREGTCISEK-GIKKNIYDIMKNAKGCVL 229
              S           I N     L+ +ST          E+     N    + N  G  L
Sbjct: 178 GDFSRQEDRHLMAAEIPNIKPDILIIESTYGTHIHEKREEREARFCNTVHDIVNRGGRGL 237

Query: 230 VTTFSSSVSRIRSIIDIAEQIGRKIVLLGSSLKRVVSVAIDVGIIKKDQLFLSDES---- 285
           +  F+   ++   ++ + E       L    +    S+A     + +  +   ++     
Sbjct: 238 IPVFALGRAQ-ELLLILDEYWQNHPELHDIPIYYASSLAKKCMAVYQTYVNAMNDKIRKQ 296

Query: 286 ------------------FGLYPREQLIVIATGSQGEPRSALAQLS--RGEMRNVKLAEK 325
                                      +V+A+    +   +         + RN  +   
Sbjct: 297 ININNPFVFKHISNLKSMDHFDDIGPSVVMASPGMMQSGLSRELFESWCTDKRNGVIIAG 356

Query: 326 DTVIFS-SRAIPGNEVAIGHIKNRLVEQGVRVIAEDAECPVHVSGHPYPNDLKRMYQWIR 384
             V  + ++ I      I  +  + +   + V        +  S H          + ++
Sbjct: 357 YCVEGTLAKHIMSEPEEITTMSGQKLPLKMSVDY------ISFSAHTDYQQTSEFIRALK 410

Query: 385 PQVLVAIHGEPLHLVAHKELALQE-------GIACVPPVRNGKMLRL 424
           P  ++ +HGE   +   K   ++E        I    P RN + + L
Sbjct: 411 PPHVILVHGEQNEMARLKAALIREYEDNDEVHIEVHNP-RNTEAVTL 456


>1ycg_A Nitric oxide reductase; DIIRON site, oxidoreductase; HET: FMN;
           2.80A {Moorella thermoacetica} SCOP: c.23.5.1 d.157.1.3
           PDB: 1ycf_A* 1ych_A*
          Length = 398

 Score = 99.5 bits (247), Expect = 2e-21
 Identities = 51/374 (13%), Positives = 107/374 (28%), Gaps = 50/374 (13%)

Query: 33  KWIMIDCGVSFPKDDLPGVDLVFPDITFIMKERKNLMAIFITHAHEDHYGALHDLWS-FL 91
           K  ++D          P  + +   +  I    K L  + + H   DH GA   +     
Sbjct: 45  KTALVDTV------YEPFKEELIAKLKQIKDPVK-LDYLVVNHTESDHAGAFPAIMELCP 97

Query: 92  HVPVYASPFAIGLLEAKRVYERVSKKIPCISFQAGDKVDVGAFSIESVRVNHSIPETMAL 151
              V  +  A   L+A                + G  V +G  S+        +    ++
Sbjct: 98  DAHVLCTQRAFDSLKA----HYSHIDFNYTIVKTGTSVSLGKRSLT-FIEAPMLHWPDSM 152

Query: 152 VIRSPVGNIVHTGDWKLD---DDAILGDVTDKDSLCAIGNEGILALMCDSTNAMREGT-- 206
               P   ++   D             D  D   +     +    ++   +N + +    
Sbjct: 153 FTYVPEEALLLPNDAFGQHIATSVRFDDQVDAGLIMDEAAKYYANILMPFSNLITKKLDE 212

Query: 207 ----------------CISEKGIKKNIYDIMKNAKGCVLVTTFSSSVSRIRSIIDIAEQI 250
                            I  K   + I    + A+G        +  +   S   +A  +
Sbjct: 213 IQKINLAIKTIAPSHGIIWRKDPGRIIEAYARWAEGQGKAKAVIAYDTMWLSTEKMAHAL 272

Query: 251 GRKIVLLGSSLKRVVSVAIDVGIIKKDQLFLSDESFGLYPREQLIVIATGSQGEPRSALA 310
              +V  G           +V + K      +D    +    + +++ + +       + 
Sbjct: 273 MDGLVAGG----------CEVKLFKLSVSDRNDVIKEI-LDARAVLVGSPTINNDILPVV 321

Query: 311 QLSRGEMRNVKLAEKDTVIFSSRAIPGNEVAIGHIKNRLVEQGVRVIAEDAECPVHVSGH 370
                ++  ++   K  + F +        A   ++ RL    + +IAE       V   
Sbjct: 322 SPLLDDLVGLRPKNKVGLAFGA--YGWGGGAQKILEERLKAAKIELIAEP---GPTVQWV 376

Query: 371 PYPNDLKRMYQWIR 384
           P   DL+R Y+  R
Sbjct: 377 PRGEDLQRCYELGR 390


>1e5d_A Rubredoxin\:oxygen oxidoreductase; oxygenreductase, DIIRON-centre,
           flavoproteins, lactamase-fold; HET: FMN; 2.5A
           {Desulfovibrio gigas} SCOP: c.23.5.1 d.157.1.3
          Length = 402

 Score = 89.1 bits (220), Expect = 2e-18
 Identities = 41/365 (11%), Positives = 108/365 (29%), Gaps = 31/365 (8%)

Query: 33  KWIMIDCGVSFPKDDLPGVDLVFPDITFIMKERKNLMAIFITHAHEDHYGALHDLWS-FL 91
           K  + D               +   I  ++  +K +  + I H   DH GAL  L     
Sbjct: 44  KTTLFDTV------KAEYKGELLCGIASVIDPKK-IDYLVIQHLELDHAGALPALIEACQ 96

Query: 92  HVPVYASPFAIGLLEAKRVYERVSKKIPCISFQAGDKVDVGAFSIESVRVNHSIPETMAL 151
              ++ S      +E+   Y    K  P    + G+ + +G  ++        +    ++
Sbjct: 97  PEKIFTSSLGQKAMESHFHY----KDWPVQVVKHGETLSLGKRTVTFYET-RMLHWPDSM 151

Query: 152 VIRSPVGNIVHTGDWKLDDDAILGDVTDKDSLCAIGNEGILALMCDSTNAMREGTCISEK 211
           V       ++ + D    + A     +D+  +  +                 +     E 
Sbjct: 152 VSWFADEKVLISNDIFGQNIAASERFSDQIPVHTLERAMREYYANIVNPYAPQTLKAIET 211

Query: 212 GIKKNI-YDIMKNAKGCVLVTTFSSSVSRIRSIIDIAEQIGRKIVLLGSS-------LKR 263
            +   +  + +    G +       + +  + +    ++   K+V+   S       + R
Sbjct: 212 LVGAGVAPEFICPDHGVIFRGADQCTFAVQKYVEYAEQKPTNKVVIFYDSMWHSTEKMAR 271

Query: 264 VVSVAIDVGIIKKDQLFLSD----ESFGLYPREQLIVIATGSQGEPRSALAQLSRGEMRN 319
           V++ +          ++       +          +++ + +           +   ++ 
Sbjct: 272 VLAESFRDEGCTVKLMWCKACHHSQIMSEISDAGAVIVGSPTHNNGILPYVAGTLQYIKG 331

Query: 320 VKLAEKDTVIFSSRAIPGNEVAIGHIKNRLVEQGVRVIAEDAECPVHVSGHPYPNDLKRM 379
           ++   K    F S     +  +   +   L   G  + A     PV V   P   D +++
Sbjct: 332 LRPQNKIGGAFGS--FGWSGESTKVLAEWLTGMGFDMPAT----PVKVKNVPTHADYEQL 385

Query: 380 YQWIR 384
               +
Sbjct: 386 KTMAQ 390


>2i7x_A Protein CFT2; polyadenylation, metallo-B-lactamase, PRE-mRNA
           processing, artemis, V(D)J recombination, double-strand
           break repair; 2.50A {Saccharomyces cerevisiae} SCOP:
           d.157.1.10
          Length = 717

 Score = 61.7 bits (149), Expect = 4e-10
 Identities = 40/365 (10%), Positives = 93/365 (25%), Gaps = 80/365 (21%)

Query: 35  IMIDCGVSFPKDDLPGVDLVFPDITFIMKERKNLMAIFITHAHEDHYGALHDLWS----- 89
           ++ID G +      P        I +  K    +  I ++    +  GA   L+      
Sbjct: 27  LLIDPGWN------PSKVSYEQCIKYWEKVIPEIDVIILSQPTIECLGAHSLLYYNFTSH 80

Query: 90  -FLHVPVYASPFAIGLLE------AKRVYERVSKKIP-------------CISFQAGDKV 129
               + VYA+   I L                                   +  +    V
Sbjct: 81  FISRIQVYATLPVINLGRVSTIDSYASAGVIGPYDTNKLDLEDIEISFDHIVPLKYSQLV 140

Query: 130 DV----GAFSIESVRVNHSIPETMALVIRSPVGNIVHTGDWKLDDDAILGDVTDKDSLCA 185
           D+       ++ +         ++   I +    +V+   W    D IL   +  D+   
Sbjct: 141 DLRSRYDGLTLLAYNAGVCPGGSI-WCISTYSEKLVYAKRWNHTRDNILNAASILDATGK 199

Query: 186 IGNEGIL--ALMCDSTNAMREGTCISEKGIKKNIYDIMKNAKGCVLVTTFSSSVSRIRSI 243
             +  +   A++                 I K+      ++ G V++        +   +
Sbjct: 200 PLSTLMRPSAIITTLDRFGSSQPFKKRSKIFKDTLKKGLSSDGSVIIPVD--MSGKFLDL 257

Query: 244 IDIAEQIGRK-----------IVLLGSSLKRVVSVA--------------------IDVG 272
                ++  +           +++L  +  R ++ A                        
Sbjct: 258 FTQVHELLFESTKINAHTQVPVLILSYARGRTLTYAKSMLEWLSPSLLKTWENRNNTSPF 317

Query: 273 IIKKDQLFLSDESFGLYPREQLIVIATGSQGEPRSALAQLSRGEMRNVKLAEKDTVIFSS 332
            I      ++      YP    I   +         + ++           EK T+I + 
Sbjct: 318 EIGSRIKIIAPNELSKYP-GSKICFVSEVGALINEVIIKVGNS--------EKTTLILTK 368

Query: 333 RAIPG 337
            +   
Sbjct: 369 PSFEC 373


>2ohh_A Type A flavoprotein FPRA; beta-lactamase like domain, flavodoxine
           like domain, oxidoreductase; HET: FMN; 1.70A
           {Methanothermobacterthermautotrophicus} PDB: 2ohi_A*
           2ohj_A*
          Length = 404

 Score = 54.4 bits (130), Expect = 7e-08
 Identities = 57/372 (15%), Positives = 123/372 (33%), Gaps = 44/372 (11%)

Query: 33  KWIMIDCGVSFPKDDLPGVDLVFPDITFIMKE--RKNLMAIFITHAHEDHYGALHDLWS- 89
              +ID             D +   +   +++   + +  I   H  +DH G L +L   
Sbjct: 45  GVALIDNS------YPGTFDELMARVEDALQQVGMERVDYIIQNHVEKDHSGVLVELHRR 98

Query: 90  FLHVPVYASPFAIGLLEAKRVYERVSKKIPCISFQAGDKVDVGAFSIESVRVNHSIPETM 149
           F   P+Y +  A+  L  K        +   +       +     +     + H  P++M
Sbjct: 99  FPEAPIYCTEVAVKGLL-KHYPSLREAEFMTVKTGDVLDLGGKTLTFLETPLLHW-PDSM 156

Query: 150 ALVIRSPVGNIVHTGDWKLD---DDAILGDVTDKDSLCAIGNEGILALMCDSTNAMREGT 206
             ++      I+ + D           L     +  L     +    L+   +  + +  
Sbjct: 157 FTLL--DEDGILFSNDAFGQHLCCPQRLDREIPEYILMDAARKFYANLITPLSKLVLKKF 214

Query: 207 C-ISEKGIKKNIYDIMKNAKGCVLVTTFSSSVSRIRSIIDIAEQIGRKIVLL------GS 259
             + E G+ + I  I   + G +    ++  +  I +    A  +  + V +      GS
Sbjct: 215 DEVKELGLLERIQMIA-PSHGQI----WTDPMKIIEAYTGWATGMVDERVTVIYDTMHGS 269

Query: 260 SLKRVVSVA-------IDVGIIKKDQLFLSDESFGLYPREQLIVIATGSQGEPRSALAQL 312
           + K   ++A       +DV +    +   S+    +     + + A     EP  ++  L
Sbjct: 270 TRKMAHAIAEGAMSEGVDVRVYCLHEDDRSEIVKDILESGAIALGAPTIYDEPYPSVGDL 329

Query: 313 --SRGEMRNVKLAEKDTVIFSSRAIPGNEVAIGHIKNRLVEQGVRVIAEDAECPVHVSGH 370
                 ++  +   +  ++F S  + GN  A G +K  L E G  V          V   
Sbjct: 330 LMYLRGLKFNRTLTRKALVFGS--MGGNGGATGTMKELLAEAGFDVAC-----EEEVYYV 382

Query: 371 PYPNDLKRMYQW 382
           P  ++L   ++ 
Sbjct: 383 PTGDELDACFEA 394


>2vw8_A PA1000, PQSE; quinolone signal response protein, signaling protein,
           SSPF; 1.45A {Pseudomonas aeruginosa PAO1} PDB: 2q0j_A
           2q0i_A 3dh8_A*
          Length = 303

 Score = 53.2 bits (127), Expect = 2e-07
 Identities = 31/181 (17%), Positives = 61/181 (33%), Gaps = 34/181 (18%)

Query: 7   VFLPLGGVGEIGMNMALYGYGSPSSRKWIMIDCGVSFPKDDLPGVDLVFPDITFIMKERK 66
           +   L  +G++ + + L   G      W +++ G+S         +LV+ D+   + +  
Sbjct: 12  LDDDLCLLGDVQVPVFLLRLGE---ASWALVEGGIS------RDAELVWADLCRWVADPS 62

Query: 67  NLMAIFITHAHEDHYGALHD-LWSFLHVPVYASPFAIGLLEAKRVYERVSK--------- 116
            +    ITH H DH G L        +V V AS       +++     V +         
Sbjct: 63  QVHYWLITHKHYDHCGLLPYLCPRLPNVQVLASERTCQAWKSESAVRVVERLNRQLLRAE 122

Query: 117 ----------KIPCISFQAGDKVDVGAFSIESVRVN--HSIPETMALVIRSPVGNIVHTG 164
                      +P  +   G+ +++G      V     HS  + +           +  G
Sbjct: 123 QRLPEACAWDALPVRAVADGEWLELGPRHRLQVIEAHGHS-DDHVVFYD--VRRRRLFCG 179

Query: 165 D 165
           D
Sbjct: 180 D 180


>2q0i_A Quinolone signal response protein; quorum sensing, pseudomonas
           quinolone signal, PQS, metall- beta-lactamase, iron,
           phosphodiesterase; 1.57A {Pseudomonas aeruginosa} SCOP:
           d.157.1.14 PDB: 2q0j_A 3dh8_A*
          Length = 303

 Score = 52.7 bits (125), Expect = 2e-07
 Identities = 30/179 (16%), Positives = 63/179 (35%), Gaps = 17/179 (9%)

Query: 7   VFLPLGGVGEIGMNMALYGYGSPSSRKWIMIDCGVSFPKDDLPGVDLVFPDITFIMKERK 66
           +   L  +G++ + + L   G      W +++ G+S         +LV+ D+   + +  
Sbjct: 12  LDDDLCLLGDVQVPVFLLRLGE---ASWALVEGGIS------RDAELVWADLCRWVADPS 62

Query: 67  NLMAIFITHAHEDHYGALHD-LWSFLHVPVYASPFAIGLLEAK---RVYERVSKKIPCIS 122
            +    ITH H DH G L        +V V AS       +++   RV ER+++++    
Sbjct: 63  QVHYWLITHKHYDHCGLLPYLCPRLPNVQVLASERTCQAWKSESAVRVVERLNRQLLRAE 122

Query: 123 FQAGDKVDVGAFSIESVRVNHSIPETMALVIRSPVGNIVHTGDWKL----DDDAILGDV 177
            +  +     A  + +V     +       ++    +                   GD 
Sbjct: 123 QRLPEACAWDALPVRAVADGEWLELGPRHRLQVIEAHGHSDDHVVFYDVRRRRLFCGDA 181


>1k07_A FEZ-1 beta-lactamase; monomer with alpha-beta/BETA-alpha fold. two
           monomers PER assymmetric UNIT., hydrolase; HET: GOL;
           1.65A {Fluoribacter gormanii} SCOP: d.157.1.1 PDB:
           1jt1_A* 1l9y_A
          Length = 263

 Score = 52.6 bits (125), Expect = 3e-07
 Identities = 20/200 (10%), Positives = 50/200 (25%), Gaps = 23/200 (11%)

Query: 14  VGEIGMNMALYGYGSPSSRKWIMIDCGVSFPKDDLPGVDLVFPDITFIMKERKNLMAIFI 73
           VG   +   L           I+I+  +         V ++   I  +  +  +   + I
Sbjct: 20  VGTDDLASYLIVTPR----GNILINSDLE------ANVPMIKASIKKLGFKFSDTKILLI 69

Query: 74  THAHEDHYGALHDLWSFLHVPVYASPFAIGLLE---------AKRVYERVSKKIPCISFQ 124
           +HAH DH      +              + ++          A       ++        
Sbjct: 70  SHAHFDHAAGSELIKQQTKAKYMVMDEDVSVILSGGKSDFHYANDSSTYFTQSTVDKVLH 129

Query: 125 AGDKVDVGAFSIESVRVNHSIPETMALVIRSPVGNIVHTGDWKLDDDAILGDVTDKDSLC 184
            G++V++G   + +              +   + +        +     +        + 
Sbjct: 130 DGERVELGGTVLTAHLTPGHTRGCTTWTM--KLKDHGKQYQAVIIGSIGVNP--GYKLVD 185

Query: 185 AIGNEGILALMCDSTNAMRE 204
            I    I      S   +  
Sbjct: 186 NITYPKIAEDYKHSIKVLES 205


>2whg_A VIM-4 metallo-beta-lactamase; hydrolase, alpha-beta/BETA-alpha
           fold; HET: FLC; 1.90A {Pseudomonas aeruginosa} PDB:
           2wrs_A* 1ko3_A 1ko2_A
          Length = 230

 Score = 51.9 bits (124), Expect = 3e-07
 Identities = 25/142 (17%), Positives = 49/142 (34%), Gaps = 17/142 (11%)

Query: 33  KWIMIDCGVSFPKDDLPGVDLVFPDITFIMKER--KNLMAIFITHAHEDHYGALHDLWSF 90
           + ++ID                   +   ++++    +     TH H+D  G + D+   
Sbjct: 48  ELLLIDTAWGAKN---------TAALLAEIEKQIGLPVTRAVSTHFHDDRVGGV-DVLRA 97

Query: 91  LHVPVYASPFAIGLLEAKRVYERVSKKIPCISFQAGDKVDVGAFSIESVRVNHSIPETMA 150
             V  YASP    L EA+     +          +GD V  G   +      HS  + + 
Sbjct: 98  AGVATYASPSTRRLAEAE--GNEIPTHSLEGLSSSGDAVRFGPVELFYPGAAHS-TDNLV 154

Query: 151 LVIRSPVGNIVHTGDWKLDDDA 172
           + +  P  N+++ G    +   
Sbjct: 155 VYV--PSANVLYGGCAVHELSR 174


>2xf4_A Hydroxyacylglutathione hydrolase; HET: PG4; 2.30A {Salmonella
           enterica}
          Length = 210

 Score = 51.5 bits (123), Expect = 5e-07
 Identities = 28/162 (17%), Positives = 44/162 (27%), Gaps = 20/162 (12%)

Query: 27  GSPSSRKWIMIDCGVSFPKDDLPGVDLVFPDITFIMKERKNLMAIFITHAHEDHYGALHD 86
               +R   ++D G                    +      LM I +TH H DH GA  +
Sbjct: 19  WCEQTRLAALVDPGGDAE-----------KIKQEVDASGVTLMQILLTHGHLDHVGAASE 67

Query: 87  LWSFLHVPVYASPFAIGLLEAKRV-------YERVSKKIPCISFQAGDKVDVGAFSIESV 139
           L     VPV                       +      P      GD+V VG  +++ +
Sbjct: 68  LAQHYGVPVIGPEKEDEFWLQGLPAQSRMFGLDECQPLTPDRWLNDGDRVSVGNVTLQVL 127

Query: 140 RVNHSIPETMALVIRSPVGNIVHTGDWKLDDDAILGDVTDKD 181
                 P  +          ++ +GD          D    D
Sbjct: 128 HCPGHTPGHVVFFD--EQSQLLISGDVIFKGGVGRSDFPRGD 167


>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
           acyl-carrier-protein, beta-ketoacyl reductase,
           beta-ketoacyl synthase, dehydratase; 4.00A
           {Saccharomyces cerevisiae}
          Length = 2006

 Score = 51.1 bits (122), Expect = 7e-07
 Identities = 66/425 (15%), Positives = 108/425 (25%), Gaps = 206/425 (48%)

Query: 7   VFLPLGGVGEIGM-NMALYGYGSPSSRKWIMIDC---GVSFPKDDLPGVDLVFPDITFIM 62
           +  PL     IG+  +A Y           ++     G +      PG +L         
Sbjct: 236 ISCPL-----IGVIQLAHY-----------VVTAKLLGFT------PG-EL--------- 263

Query: 63  KERKNL-----------MAIFITHAH--EDHYGALHDLWSFLHVPVYASPFAIGLLEAKR 109
             R  L            A+ I      E  + ++    + L        F IG+     
Sbjct: 264 --RSYLKGATGHSQGLVTAVAIAETDSWESFFVSVRKAITVL--------FFIGV-RCYE 312

Query: 110 VYERVSKKIPCISFQAGDKVDVGAFSIE-------SVR-------------VNHSIPET- 148
            Y   S  +P    +  D ++      E       S+               N  +P   
Sbjct: 313 AYPNTS--LPPSILE--DSLENN----EGVPSPMLSISNLTQEQVQDYVNKTNSHLPAGK 364

Query: 149 ---MALVIRSPVGNIVHTGDWKLDDDAILGDVTDKDSLCAIGNEGILALMCDSTNAMREG 205
              ++L +     N+V +G  +              SL        L L       +R+ 
Sbjct: 365 QVEISL-VNGA-KNLVVSGPPQ--------------SLYG------LNL------TLRK- 395

Query: 206 TCISEKGIKKNIYDIMKNAKGC------------VLVTTF--------SSSVSRIRSII- 244
                           K   G                  F        S  +     +I 
Sbjct: 396 ---------------AKAPSGLDQSRIPFSERKLKFSNRFLPVASPFHSHLLVPASDLIN 440

Query: 245 -DIAEQIGRKIVLLGSSLKRVVSVAIDV-----GIIKKDQLFLSDESFGLYPREQLI-VI 297
            D+ +     +      ++      I V     G    D   L   S  +  R  ++  I
Sbjct: 441 KDLVKN---NVSFNAKDIQ------IPVYDTFDG---SD---LRVLSGSISER--IVDCI 483

Query: 298 ATGSQGEPRSALAQLSRGEMRNVKLAEKDTVIFSSRAI----PGNEVAIGHIKNRLVE-Q 352
                  P              VK  E  T  F +  I    PG    +G + +R  +  
Sbjct: 484 IR----LP--------------VKW-ETTTQ-FKATHILDFGPGGASGLGVLTHRNKDGT 523

Query: 353 GVRVI 357
           GVRVI
Sbjct: 524 GVRVI 528



 Score = 49.9 bits (119), Expect = 1e-06
 Identities = 106/617 (17%), Positives = 182/617 (29%), Gaps = 224/617 (36%)

Query: 26  YGSPSSRKWIMIDCGVSFPKDDLPGVDLVFPDITFIMKERKNLMAIFITHAHEDHYGALH 85
           +GS        ++  +  P            +  F     K L       A +D      
Sbjct: 13  HGS--------LEHVLLVPTASFFIAS-QLQE-QFN----KILPEPTEGFAADDEPTTPA 58

Query: 86  DLW-SFL-HVPVYASPFAIG-----LLEAKRVYERVSKKIPCISFQAGDKVDVGAFSIES 138
           +L   FL +V     P  +G     L      +E          +  G+  D+ A     
Sbjct: 59  ELVGKFLGYVSSLVEPSKVGQFDQVLNLCLTEFEN--------CYLEGN--DIHAL---- 104

Query: 139 VRVNHSIPETMAL----VIRSPVGNIVHTGD--WKLDDDAILGDVTDKD-SLCAI-GNEG 190
                   +T  +    +I++ +   +       K  + A+   V + +  L AI G +G
Sbjct: 105 AAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQG 164

Query: 191 ILALMCDSTNAMREGTCISEKGIKKNIYDIMKNAKGCVLVTTFSSSVSR-----IRSIID 245
                  +T+         E    +++Y         VLV       +      IR+ +D
Sbjct: 165 -------NTD-----DYFEEL---RDLYQTYH-----VLVGDLIKFSAETLSELIRTTLD 204

Query: 246 IAEQIGRKIVLLGSSLKR---------VVSVAIDVGIIKKDQL---FLSDESFGLYPRE- 292
             +   + + +L   L+          ++S+ I   +I   QL    ++ +  G  P E 
Sbjct: 205 AEKVFTQGLNIL-EWLENPSNTPDKDYLLSIPISCPLIGVIQLAHYVVTAKLLGFTPGEL 263

Query: 293 -QLIVIATG-SQG-EPRSALAQLSRGE--MRNVKLAEKDTVIFSSRAIPGNEVAIGHIKN 347
              +  ATG SQG     A+A+    E    +V+ A   TV+F              I  
Sbjct: 264 RSYLKGATGHSQGLVTAVAIAETDSWESFFVSVRKAI--TVLF-------------FI-- 306

Query: 348 RLVEQGVRVIAEDAECPVHVSGHPYPNDLKRMYQWIRPQVL---VAIHGE--PLHLVAHK 402
                GVR                YPN        + P +L   +  + E  P  +++  
Sbjct: 307 -----GVR------------CYEAYPN------TSLPPSILEDSLE-NNEGVPSPMLSIS 342

Query: 403 EL---ALQEGI----ACVPPVR-------NGKMLRLFPDPIEIIDEVV-------HGLFL 441
            L    +Q+ +    + +P  +       NG         +     VV       +GL L
Sbjct: 343 NLTQEQVQDYVNKTNSHLPAGKQVEISLVNG------AKNL-----VVSGPPQSLYGLNL 391

Query: 442 KDGFL--IGKFADLGIAK----RRQLSFVGH--LSVNVLLDNHY------NI---FGVPE 484
               L      + L  ++     R+L F  +  L V     +H        I        
Sbjct: 392 T---LRKAKAPSGLDQSRIPFSERKLKFS-NRFLPVASPFHSHLLVPASDLINKDLVKNN 447

Query: 485 IV----DIGIPAYDGDGGKIHKLLLKTVITTVVDLPQFRRKDLKLLRESISSALRSLLKK 540
           +     DI IP YD   G               D           LR    S    ++  
Sbjct: 448 VSFNAKDIQIPVYDTFDGS--------------D-----------LRVLSGSISERIVDC 482

Query: 541 V------WGKKPLVTVF 551
           +      W      T F
Sbjct: 483 IIRLPVKW---ETTTQF 496



 Score = 49.6 bits (118), Expect = 2e-06
 Identities = 37/181 (20%), Positives = 64/181 (35%), Gaps = 62/181 (34%)

Query: 290 PREQLIVIA--TGSQ-----GEPRSALAQLSRGEMRNVKL-AEKDT--VIFSSRA----- 334
           P  + + I+   G++     G P+S L  L+   +R  K  +  D   + FS R      
Sbjct: 361 PAGKQVEISLVNGAKNLVVSGPPQS-LYGLNL-TLRKAKAPSGLDQSRIPFSERKLKFSN 418

Query: 335 --IPGNEVAIG---H----------IKNRLVEQGVRVIAEDAECPVH--VSGHPYPNDLK 377
             +P     +    H          I   LV+  V   A+D + PV+    G    +DL+
Sbjct: 419 RFLP-----VASPFHSHLLVPASDLINKDLVKNNVSFNAKDIQIPVYDTFDG----SDLR 469

Query: 378 RMYQWIRPQVLVAIHGEPLHLVAHKELALQE-----------GIACVPPV--RN--GKML 422
            +   I  +++  I   P+      E   Q            G + +  +  RN  G  +
Sbjct: 470 VLSGSISERIVDCIIRLPVKW----ETTTQFKATHILDFGPGGASGLGVLTHRNKDGTGV 525

Query: 423 R 423
           R
Sbjct: 526 R 526



 Score = 27.2 bits (60), Expect = 9.6
 Identities = 39/201 (19%), Positives = 77/201 (38%), Gaps = 60/201 (29%)

Query: 130  DVGAFSIESVRVNHSIPETMALVIRSPVGNIVHTG--------------------DWKLD 169
            D   FSI            + +VI +PV   +H G                    D KL 
Sbjct: 1655 DTYGFSI------------LDIVINNPVNLTIHFGGEKGKRIRENYSAMIFETIVDGKLK 1702

Query: 170  DDAILGDVTDKDSLCAIGNE-GILALMCDSTNAMREGTCISEKGIKKNIYDIMKNAKGCV 228
             + I  ++ +  +     +E G+L+    +T   +    + EK      ++ +K +KG +
Sbjct: 1703 TEKIFKEINEHSTSYTFRSEKGLLS----ATQFTQPALTLMEKA----AFEDLK-SKGLI 1753

Query: 229  LV-TTFSS-SVSRIRSIIDIAEQIGRKIVLLGSSLKRVVSVAIDVGI-----IKKDQLFL 281
                TF+  S+    ++  +A+ +         S++ +V V    G+     + +D+L  
Sbjct: 1754 PADATFAGHSLGEYAALASLADVM---------SIESLVEVVFYRGMTMQVAVPRDELGR 1804

Query: 282  SDESFGLYPREQLIVIATGSQ 302
            S+  +G+       V A+ SQ
Sbjct: 1805 SN--YGMIAINPGRVAASFSQ 1823


>1jjt_A IMP-1 metallo beta-lactamase; metallo-beta-lactamase inhibitor,
           succinic acid inhibitor, hydrolase; HET: BDS; 1.80A
           {Pseudomonas aeruginosa} SCOP: d.157.1.1 PDB: 1dd6_A*
           1vgn_A* 2doo_A* 1wup_A 1wuo_A 1jje_A* 1ddk_A
          Length = 228

 Score = 49.4 bits (117), Expect = 2e-06
 Identities = 25/159 (15%), Positives = 48/159 (30%), Gaps = 21/159 (13%)

Query: 8   FLPLGGVGEIGMNMALYGYGSPSSRKWIMIDCGVSFPKDDLPGVDLVFPDITFIMKERKN 67
           F  + G G +  +  +       + +  +ID   +               +T+ ++    
Sbjct: 22  FEEVNGWGVVPKHGLVVL----VNAEAYLIDTPFT--------AKDTEKLVTWFVERGYK 69

Query: 68  LMAIFITHAHEDHYGALHDLWSFLHVPVYASPFAIGLLEAKRVYERVSKKIPCISFQAGD 127
           +     +H H D  G +  L S   +P YAS     LL+               +  +G 
Sbjct: 70  IKGSISSHFHSDSTGGIEWLNSR-SIPTYASELTNELLKKDGKV-------QATNSFSGV 121

Query: 128 KVDVGAFSIESVRVNHSIPETMALVIRSPVGNIVHTGDW 166
              +    IE              V+  P   I+  G +
Sbjct: 122 NYWLVKNKIEVFYPGPGHTPDNV-VVWLPERKILFGGCF 159


>3adr_A Putative uncharacterized protein ST1585; quorum sensing, quinolone
           signal, metallo-beta-lactamase FOL conserved
           hypothetical protein; HET: EPE; 1.80A {Sulfolobus
           tokodaii}
          Length = 261

 Score = 49.3 bits (117), Expect = 2e-06
 Identities = 27/157 (17%), Positives = 52/157 (33%), Gaps = 39/157 (24%)

Query: 30  SSRKWIMIDCGVSFPKDDLPGVDLVFPDITFIMKERKNLMAIFITHAHEDHYGALHDLWS 89
             +  +MID GVS    D   +D               L  I +TH H DH G L +L  
Sbjct: 27  GEKLTVMIDAGVSNSIADFSFLD--------------KLDYIVLTHLHIDHIGLLPELLQ 72

Query: 90  FLHVPVYASPFAIGLLEAKRVYERVSKKI---------------------PCISFQAGDK 128
                V         L ++   +++++                         I  +  ++
Sbjct: 73  VYKAKVLVKSGFKKYLTSEDGLKKLNESAEKVLGDLYYVYGGLEKKLDQDKVIEVEGNEE 132

Query: 129 VDVGAFSIESVRVNHSIPETMALVIRSPVGNIVHTGD 165
            D+G + +  +         M++++     + + TGD
Sbjct: 133 FDLGGYRMRLIYTPGHARHHMSVLV----DDFLFTGD 165


>1xto_A Coenzyme PQQ synthesis protein B; alpha-beta protein, northeast
           structural genomics consortium, NESG, protein structure
           initiative; 2.80A {Pseudomonas putida KT2440} SCOP:
           d.157.1.6
          Length = 311

 Score = 47.1 bits (110), Expect = 1e-05
 Identities = 25/234 (10%), Positives = 62/234 (26%), Gaps = 23/234 (9%)

Query: 32  RKWIMIDCGVSFPKDDLPGVDLVFPDITFIMKER-KNLMAIFITHAHEDHYGALHDLWSF 90
             WI+ +        D+      F  +      R   + AI +  +  DH   L  L   
Sbjct: 49  VHWILCNAS-----PDIRAQLQAFAPMQPARALRDTGINAIVLLDSQIDHTTGLLSLREG 103

Query: 91  LHVPVYASPFAIGLLEAKRVYERVSKKI-------PCISFQAGDKVDVGAFSIESVRVNH 143
               V+ +      L        +                 +               +  
Sbjct: 104 CPHQVWCTDMVHQDLTTGFPLFNMLSHWNGGLQWNRIELEGSFVIDACPNLKFTPFPLRS 163

Query: 144 SIPETMALVIRSPVGNIVHTGDWKLDDDAILGDVTDKDSLCAIGNEGILALMCDSTNAMR 203
           + P           G+ +      + +D   G            +E +LA+M  +   + 
Sbjct: 164 AAPPYSPHRFDPHPGDNLGL----MVEDTRTGGKLFYAPGLGQVDEKLLAMMHGADCLLV 219

Query: 204 EGTCISEKGIKKNIYDIMKNAKGCVLVTTFSSSVSRIRSIIDIAEQIGRKIVLL 257
           +GT   +  +++         +          + +    ++++ +   R+  +L
Sbjct: 220 DGTLWEDDEMQRRGVGTRTGRE------MGHLAQNGPGGMLEVLDGFPRQRKVL 267


>3jxp_A Coenzyme PQQ synthesis protein B; alpha-beta protein, PQQ
           biosynthesis, transport, biosyntheti; 2.20A {Pseudomonas
           putida KT2440} PDB: 1xto_A
          Length = 321

 Score = 46.8 bits (110), Expect = 1e-05
 Identities = 19/178 (10%), Positives = 36/178 (20%), Gaps = 14/178 (7%)

Query: 32  RKWIMIDCGVSFPKDDLPGVDLVFPDITFIMKERKNLMAIFITHAHEDHYGALHDLWSFL 91
             WI+ +       D    +    P           + AI +  +  DH   L  L    
Sbjct: 51  VHWILCNAS----PDIRAQLQAFAPMQPARALRDTGINAIVLLDSQIDHTTGLLSLREGC 106

Query: 92  HVPVYASPFAIGLLEAKRVYERVSKKI-------PCISFQAGDKVDVGAFSIESVRVNHS 144
              V+ +      L        +                 +               +  +
Sbjct: 107 PHQVWCTDMVHQDLTTGFPLFNMLSHWNGGLQWNRIELEGSFVIDACPNLKFTPFPLRSA 166

Query: 145 IPETMALVIRSPVGN---IVHTGDWKLDDDAILGDVTDKDSLCAIGNEGILALMCDST 199
            P           G+   ++               +   D        G   L+ D T
Sbjct: 167 APPYSPHRFDPHPGDNLGLMVEDTRTGGKLFYAPGLGQVDEKLLAMMHGADCLLVDGT 224


>2bib_A CBPE, teichoic acid phosphorylcholine esterase/ choline binding
           protein; PCE, hydrolase; HET: PC BTB; 1.92A
           {Streptococcus pneumoniae} SCOP: b.109.1.1 d.157.1.8
           PDB: 1wra_A*
          Length = 547

 Score = 45.6 bits (107), Expect = 3e-05
 Identities = 29/189 (15%), Positives = 53/189 (28%), Gaps = 43/189 (22%)

Query: 29  PSSRKWIMIDCGVSFPKDDLPGVDLVFPDITFIMKER---------------KNLMAIFI 73
            S+  + M+D G  +   D       + +      +                + L  I +
Sbjct: 24  ESNGHFAMVDTGEDYDFPDGSDSRYPWREGIETSYKHVLTDRVFRRLKELSVQKLDFILV 83

Query: 74  THAHEDHYGALHDLWSFLHV-PVYASPFA-------IGLLEAKRVYERVSK-------KI 118
           TH H DH G + +L S   V  VY   ++         L +    Y++V +        +
Sbjct: 84  THTHSDHIGNVDELLSTYPVDRVYLKKYSDSRITNSERLWDNLYGYDKVLQTATETGVSV 143

Query: 119 PCISFQAGDKVDVGAFSIESVRVNHSIPET-------------MALVIRSPVGNIVHTGD 165
                Q       G   I+     +    +             +  V++     I   GD
Sbjct: 144 IQNITQGDAHFQFGDMDIQLYNYENETDSSGELKKIWDDNSNSLISVVKVNGKKIYLGGD 203

Query: 166 WKLDDDAIL 174
                 A  
Sbjct: 204 LDNVHGAED 212


>2e7y_A TRNAse Z; tRNA maturation, metallo-beta-lactaMSe, structural
           genomics, NPPSFA, national project on protein structural
           and functional analyses; 1.97A {Thermotoga maritima}
           SCOP: d.157.1.7 PDB: 1ww1_A
          Length = 280

 Score = 44.0 bits (102), Expect = 9e-05
 Identities = 33/262 (12%), Positives = 64/262 (24%), Gaps = 45/262 (17%)

Query: 21  MALYGYGSPSSRKW-------IMIDCGVSFPKDDLPGVDLVFPDITFIMKERKNLMAIFI 73
           M + G+       W       I+ D G         GV       T +  +      +F+
Sbjct: 1   MNIIGFSKALFSTWIYYSPERILFDAG--------EGV------STTLGSKVYAFKYVFL 46

Query: 74  THAHEDHYGALHDLWS-------------FLHVPVYASPFAIGLLEAKRVYERVSKKIPC 120
           TH H DH   L  + +              +  P             KR    +      
Sbjct: 47  THGHVDHIAGLWGVVNIRNNGMGDREKPLDVFYPEGNRAVEEYTEFIKRANPDLRFSFNV 106

Query: 121 ISFQAG-----DKVDVGAFSIESVRVNHSIPETMALVIRSPVGNIVHTGDWKLDDDAILG 175
              + G              ++  R  H   E         V   +      LD   I  
Sbjct: 107 HPLKEGERVFLRNAGGFKRYVQPFRTKHVSSEVSFGYHIFEVRRKLKKEFQGLDSKEI-- 164

Query: 176 DVTDKDSLCAIGNEGILALMCDSTNAMREGTCISEKGIKKNIYDIMKNAKGCVLVTTFSS 235
                  +   G + +          +   +   +    +    ++              
Sbjct: 165 ----SRLVKEKGRDFVTEEYHKKVLTISGDSLALDPEEIRGTELLIHECTFLDARDRRYK 220

Query: 236 SVSRIRSIIDIAEQIGRKIVLL 257
           + + I  +++  +  G K V+L
Sbjct: 221 NHAAIDEVMESVKAAGVKKVIL 242


>3l6n_A Metallo-beta-lactamase; zinc, hydolase, antibiotics resistance,
           hydrolase; 1.65A {Chryseobacterium indologenes}
          Length = 219

 Score = 42.3 bits (99), Expect = 3e-04
 Identities = 20/138 (14%), Positives = 45/138 (32%), Gaps = 19/138 (13%)

Query: 30  SSRKWIMIDCGVSFPKDDLPGVDLVFPDITFIMKER-KNLMAIFITHAHEDHYGALHDLW 88
           + +  ++ D      K     +      +  I K     ++A+F TH+H+D  G L    
Sbjct: 38  TKKGVVLFDVPWE--KVQYQSL------MDTIKKRHNLPVVAVFATHSHDDRAGDLSFFN 89

Query: 89  SFLHVPVYASPFAIGLLEAKRVYERVSKKIPCISFQAGDKVDVGAFSIESVRVNHS-IPE 147
           +   +  YA+       +     ++  K       + G    +G        +      +
Sbjct: 90  N-KGIKTYATA------KTNEFLKKDGKATSTEIIKTGKPYRIGGEEFVVDFLGEGHTAD 142

Query: 148 TMALVIRSPVGNIVHTGD 165
            + +    P  N++  G 
Sbjct: 143 NVVVWF--PKYNVLDGGC 158


>1ko3_A VIM-2 metallo-beta-lactamase; alpha-beta/BETA-alpha fold,
           hydrolase; 1.91A {Pseudomonas aeruginosa} SCOP:
           d.157.1.1 PDB: 1ko2_A
          Length = 230

 Score = 41.4 bits (96), Expect = 5e-04
 Identities = 28/144 (19%), Positives = 46/144 (31%), Gaps = 15/144 (10%)

Query: 30  SSRKWIMIDCGVSFPKDDLPGVDLVFPDITFIMKER-KNLMAIFITHAHEDHYGALHDLW 88
              + ++ID                   +  I K+    +     TH H+D  G + D+ 
Sbjct: 45  DGDELLLIDTAWGAKNTA--------ALLAEIEKQIGLPVTRAVSTHFHDDRVGGV-DVL 95

Query: 89  SFLHVPVYASPFAIGLLEAKRVYERVSKKIPCISFQAGDKVDVGAFSIESVRVNHSIPET 148
               V  YASP    L E       +          +GD V  G   +      HS   T
Sbjct: 96  RAAGVATYASPSTRRLAE--VEGNEIPTHSLEGLSSSGDAVRFGPVELFYPGAAHS---T 150

Query: 149 MALVIRSPVGNIVHTGDWKLDDDA 172
             LV+  P  ++++ G    +   
Sbjct: 151 DNLVVYVPSASVLYGGCAIYELSR 174


>1ztc_A Hypothetical protein TM0894; structural genomics, PSI, protein
           structure initiative, joint center for structural
           genomics, JCSG; HET: MSE; 2.10A {Thermotoga maritima}
           SCOP: d.157.1.11
          Length = 221

 Score = 41.5 bits (96), Expect = 5e-04
 Identities = 28/169 (16%), Positives = 53/169 (31%), Gaps = 15/169 (8%)

Query: 33  KWIMIDCGVSFPKDDLPGVDLVFPDITFIMKERKNLMAIFITHAHEDHYGALHDLWS--- 89
           + I+ID G          +D +    + +     ++  +  TH H DH        +   
Sbjct: 45  RRIIIDPGNL------SSMDELEEKFSELGISPDDITDVLFTHVHLDHIFNSVLFENATF 98

Query: 90  FLHVPVYASPFAIGLLEAKRVYERVSKKIPCISFQAGDKVDVGAFSIESVRVNHSIPETM 149
           ++H       +        R+Y +V      +    G++              H+     
Sbjct: 99  YVHEVYKTKNYLSFGTIVGRIYSKVISSWKNVVLLKGEESLFDEKVKVFHTPWHAREHLS 158

Query: 150 ALVIRSPVGNIVHTGD------WKLDDDAILGDVTDKDSLCAIGNEGIL 192
            L+     G ++ TGD         D     G V  K+ L  +G   +L
Sbjct: 159 FLLDTENAGRVLITGDITPNRLSYYDIIKGYGSVQVKNFLDRVGRIDLL 207


>1m2x_A Class B carbapenemase BLAB-1; alpha-beta/BETA-alpha fold.,
           hydrolase; HET: MCO; 1.50A {Elizabethkingia
           meningoseptica} SCOP: d.157.1.1
          Length = 223

 Score = 40.6 bits (94), Expect = 9e-04
 Identities = 23/141 (16%), Positives = 45/141 (31%), Gaps = 17/141 (12%)

Query: 33  KWIMIDCGVSFPKDDLPGVDLVFPDITFIMKER-KNLMAIFITHAHEDHYGALHDLWSFL 91
             ++IDC          G D        I K+  K ++    TH+H+D  G L + +  +
Sbjct: 37  GVVVIDCP--------WGEDKFKSFTDEIYKKHGKKVIMNIATHSHDDRAGGL-EYFGKI 87

Query: 92  HVPVYASPFAIGLLEAKRVYERVSKKIPCISFQAGDKVDVGAFSIESVRVNHSIPETMAL 151
               Y++           +  + +K     +F       VG    +             +
Sbjct: 88  GAKTYSTKM------TDSILAKENKPRAQYTFDNNKSFKVGKSEFQVYYPGKGHTADN-V 140

Query: 152 VIRSPVGNIVHTGDWKLDDDA 172
           V+  P   ++  G      D+
Sbjct: 141 VVWFPKEKVLVGGCIIKSADS 161


>2p18_A Glyoxalase II; metalloprotein, beta sandwich, alpha-helical domain,
           hydrolase; HET: SPD; 1.80A {Leishmania infantum} PDB:
           2p1e_A*
          Length = 311

 Score = 40.3 bits (93), Expect = 0.001
 Identities = 23/151 (15%), Positives = 41/151 (27%), Gaps = 14/151 (9%)

Query: 24  YGY--GSPSSRKWIMIDCGVSFPKDDLPGVDLVFPDITFIMKERKN--LMAIFITHAHED 79
           + Y     ++     +D       D  P +  +   +              I  TH H D
Sbjct: 41  FSYLINDHTTHTLAAVDVNA----DYKPILTYIEEHLKQQGNADVTYTFSTILSTHKHWD 96

Query: 80  HYGALHDLWSFLHVPVYASPFAIGLLEAKRVYERVSKKIPCISFQAGDKVDVGAFSIESV 139
           H G    L + L       P  +       +             + GD+V VG  S+E +
Sbjct: 97  HSGGNAKLKAELEAMNSTVPVVVVGGANDSIP------AVTKPVREGDRVQVGDLSVEVI 150

Query: 140 RVNHSIPETMALVIRSPVGNIVHTGDWKLDD 170
                    +   ++ P         +  D 
Sbjct: 151 DAPCHTRGHVLYKVQHPQHPNDGVALFTGDT 181


>2q9u_A A-type flavoprotein; flavodoxin like, beta lactamase like,
           oxidoreductase; HET: FMN; 1.90A {Giardia intestinalis}
          Length = 414

 Score = 40.1 bits (93), Expect = 0.001
 Identities = 8/43 (18%), Positives = 16/43 (37%), Gaps = 1/43 (2%)

Query: 66  KNLMAIFITHAHEDHYGALHDLWS-FLHVPVYASPFAIGLLEA 107
             +  + + HA  DH  +L D +  F +     +      L+ 
Sbjct: 76  DKIKYVVMNHAEGDHASSLKDHYHKFTNATFVCTKKCQEHLKI 118


>1mqo_A Beta-lactamase II; alpha-beta/BETA-alpha fold, hydrolase; HET: CIT;
           1.35A {Bacillus cereus} SCOP: d.157.1.1 PDB: 1bc2_A
           1bvt_A* 3i0v_A 3i11_A 3i13_A 3i14_A 3i15_A 2uyx_A 2bc2_A
           3bc2_A 2bfl_A 2bfk_A 2bfz_B 2bg2_A 2bg7_A 2bg8_A 1dxk_A
           2bfz_A 2bg6_A 2bga_A ...
          Length = 227

 Score = 38.7 bits (89), Expect = 0.003
 Identities = 25/133 (18%), Positives = 46/133 (34%), Gaps = 15/133 (11%)

Query: 33  KWIMIDCGVSFPKDDLPGVDLVFPDITFIMKERKNLMAIFITHAHEDHYGALHDLWSFLH 92
             +++D      K     +++V        K +K +  + ITHAH D  G +  L     
Sbjct: 51  GLVLVDSSWD-DKLTKELIEMV------EKKFQKRVTDVIITHAHADRIGGIKTLKER-G 102

Query: 93  VPVYASPFAIGLLEAKRVYERVSKKIPCISFQAGDKVDVGAFSIESVRVNHSIPETMALV 152
           +  +++     L +     E      P    Q    +  G   +E+        E   +V
Sbjct: 103 IKAHSTALTAELAKKNGYEE------PLGDLQTVTNLKFGNMKVETFYPGKGHTEDN-IV 155

Query: 153 IRSPVGNIVHTGD 165
           +  P  NI+  G 
Sbjct: 156 VWLPQYNILVGGC 168


>1qh5_A Glyoxalase II, protein (hydroxyacylglutathione hydrolase);
           metallo-hydrolase; HET: GTT GBP; 1.45A {Homo sapiens}
           SCOP: d.157.1.2 PDB: 1qh3_A*
          Length = 260

 Score = 38.6 bits (89), Expect = 0.004
 Identities = 21/147 (14%), Positives = 36/147 (24%), Gaps = 30/147 (20%)

Query: 24  YGY--GSPSSRKWIMIDCGVSFPKDDLPGVDLVFPDITFIMKERKNLMAIFITHAHEDHY 81
           Y Y      +++  ++D          P        +    K    L  +  TH H DH 
Sbjct: 13  YMYLVIDDETKEAAIVD----------PVQPQ--KVVDAARKHGVKLTTVLTTHHHWDHA 60

Query: 82  GALHDLWSFLHVPVYASPFAIGLLEAKRVYERVSKKIPCISFQAGDKVDVGAFSIESVRV 141
           G    L                                         + VG+ +++ +  
Sbjct: 61  GGNEKLVKLESGLKVYGGDD-------------RIGALTHKITHLSTLQVGSLNVKCLAT 107

Query: 142 NHSIPETMALVIRSPVG---NIVHTGD 165
                  +   +  P G     V TGD
Sbjct: 108 PCHTSGHICYFVSKPGGSEPPAVFTGD 134


>1p9e_A Methyl parathion hydrolase; Zn containing; 2.40A {Pseudomonas SP}
           SCOP: d.157.1.5
          Length = 331

 Score = 38.3 bits (88), Expect = 0.005
 Identities = 22/151 (14%), Positives = 44/151 (29%), Gaps = 20/151 (13%)

Query: 33  KWIMIDCGVSFPKDDLPGVDLVFPDITFIMKERKNLMAIFITHAHEDHYGALHDLWSFLH 92
           K +++D G        P +  +  ++     + + +  I+ITH H DH G L        
Sbjct: 107 KLVLVDTG--AAGLFGPTLGRLAANLKAAGYQPEQVDEIYITHMHPDHVGGLMVGEQLAF 164

Query: 93  VPVY------------------ASPFAIGLLEAKRVYERVSKKIPCISFQAGDKVDVGAF 134
                                  +P        K     ++  +    F+          
Sbjct: 165 PNAVVRADQKEADFWLSQTNLDKAPDDESKGFFKGAMASLNPYVKAGKFKPFSGNTDLVP 224

Query: 135 SIESVRVNHSIPETMALVIRSPVGNIVHTGD 165
            I+++  +   P     V+ S    +   GD
Sbjct: 225 GIKALASHGHTPGHTTYVVESQGQKLALLGD 255


>1vme_A Flavoprotein; TM0755, structural genomics, JCSG, protein structure
           initiative, PSI, joint center for structural genomics;
           HET: MSE; 1.80A {Thermotoga maritima} SCOP: c.23.5.1
           d.157.1.3
          Length = 410

 Score = 38.2 bits (88), Expect = 0.005
 Identities = 43/345 (12%), Positives = 102/345 (29%), Gaps = 39/345 (11%)

Query: 33  KWIMIDCGVSFPKDDLPGVDLVFPDITFIMKERKNLMAIFITHAHEDHYGALHDLWSFLH 92
             ++ID                   ++ I+  ++ +  I + H   DH G+L      + 
Sbjct: 62  ANVLIDGW------KGNYAKEFIDALSKIVDPKE-ITHIIVNHTEPDHSGSLPATLKTIG 114

Query: 93  VPVYASPFAIGLLEAKRVYERVSKKIPCISFQAGDKVDVGAFSIESVRV-NHSIPETMAL 151
             V      I     KR+ E           + G++ ++G    + V       P+TM  
Sbjct: 115 HDVE----IIASNFGKRLLEGFYGIKDVTVVKDGEEREIGGKKFKFVMTPWLHWPDTMVT 170

Query: 152 VIRSPVGNIVHTGDWKLDDDAILGDVTDKDSLCAIGNEGILALMCDSTNAMREGT----- 206
            +   + +    G + L +     + +  +       + I+ ++    N + EG      
Sbjct: 171 YLDGILFSCDVGGGYLLPEILDDSNESVVERYLPHVTKYIVTVIGHYKNYILEGAEKLSS 230

Query: 207 -----------CISEKGIKKNIYDIMKNAK-GCVLVTTFSSSVSRIRSIIDIAEQIGRKI 254
                       I +K  ++ +   +  AK             S    + ++ ++    +
Sbjct: 231 LKIKALLPGHGLIWKKDPQRLLNHYVSVAKGDPKKGKVTVIYDSMYGFVENVMKKAIDSL 290

Query: 255 VLLGSSLKRVVSVAIDVGIIKKDQLFLSDESFGLYPREQLIVIATGSQGEPRSALAQLSR 314
              G +         +   I +    + D           ++    +       L + + 
Sbjct: 291 KEKGFTPVVYKFSDEERPAISEILKDIPDSEA--------LIFGVSTYEAEIHPLMRFTL 342

Query: 315 GEMRNVKLAEKDTVIFSSRAIPGNEVAIGHIKNRLVEQGVRVIAE 359
            E+ +    EK  ++F          A       L E   R+++ 
Sbjct: 343 LEIIDKANYEKPVLVFGVHG--WAPSAERTAGELLKETKFRILSF 385


>3kl7_A Putative metal-dependent hydrolase; structural genomics, joint
           center for structural genomics, JCSG; 2.30A
           {Parabacteroides distasonis atcc 8503}
          Length = 235

 Score = 37.8 bits (87), Expect = 0.007
 Identities = 14/102 (13%), Positives = 25/102 (24%), Gaps = 1/102 (0%)

Query: 70  AIFITHAHEDHYGALHDLWSFLHVPVYASPFAIGLLEAKRVYERVSKKIPCISFQAGDKV 129
            I ITH H DH                 +         K    +       IS+   + V
Sbjct: 68  IILITHEHGDHLDPKAIQAVEKSDTEIIANENSQKKLGKGKVLKNGDTDTSISYMKIEAV 127

Query: 130 DVGAFSIESVRVNHSIPETMALVIRSPVGNIVHTGDWKLDDD 171
                +    +  H        ++      +   GD +   +
Sbjct: 128 PAYNTTPGRDK-YHPRHRDNGYILTFDGLRVYIAGDTEDIPE 168


>2p4z_A Metal-dependent hydrolases of the beta-lactamase superfamily II;
           2.10A {Thermoanaerobacter tengcongensis MB4}
          Length = 284

 Score = 37.3 bits (85), Expect = 0.009
 Identities = 22/156 (14%), Positives = 45/156 (28%), Gaps = 21/156 (13%)

Query: 30  SSRKWIMIDCGVSFPKDDLPGVDLVFPDITFIMKERKNLMAIFITHAHEDHYGAL-HDLW 88
              K I++D G S         +    +   +  +   +  + +TH H DH G L   L 
Sbjct: 40  KGNKEIVVDTGQS---------ENFIKNCGLMGIDVGRIKKVVLTHGHYDHIGGLKGLLE 90

Query: 89  SFLHVPVYASPFAIGLLEAKRVYERVSK-----------KIPCISFQAGDKVDVGAFSIE 137
               V +Y     +    A R   +  +           K   +      +++ G + I 
Sbjct: 91  RNPEVKIYTHKEILNKKYAMRKGGQFEEIGFDLSFYEKYKNNFVLIDKDAEIEEGFYVIT 150

Query: 138 SVRVNHSIPETMALVIRSPVGNIVHTGDWKLDDDAI 173
           +  + +    T         G  +           +
Sbjct: 151 NTDITYDNEFTTKNFFVEKEGKRIPDKFLDEVFVVV 186


>1a7t_A Metallo-beta-lactamase; hydrolase (beta-lactamase), zinc; HET: MES;
           1.85A {Bacteroides fragilis} SCOP: d.157.1.1 PDB:
           1a8t_A* 2bmi_A 1kr3_A 1znb_A 2znb_A 3znb_A 4znb_A
           1hlk_A*
          Length = 232

 Score = 36.0 bits (82), Expect = 0.022
 Identities = 28/198 (14%), Positives = 56/198 (28%), Gaps = 29/198 (14%)

Query: 8   FLPLGGVGEIGMNMALYGYGSPSSRKWIMIDCGVSFPKDDLPGVDLVFPDITFIMKERKN 67
              + G G +  N  +         +  ++D  ++        V+ V             
Sbjct: 26  LAEIEGWGMVPSNGMIVINN----HQAALLDTPIN-DAQTEMLVNWV------TDSLHAK 74

Query: 68  LMAIFITHAHEDHYGALHDLWSFLHVPVYASPFAIGLLEAKRVYERVSKKIPCISFQAGD 127
           +      H H D  G L  L     V  YA+   I L + K +       +P   F    
Sbjct: 75  VTTFIPNHWHGDCIGGLGYLQR-KGVQSYANQMTIDLAKEKGLP------VPEHGFTDSL 127

Query: 128 KVDVGAFSIE--SVRVNHSIPETMALVIRSP---VGNIVHTGDWKLDDDAILGDVTD-KD 181
            V +    ++   +   H+    +  +        G ++         +    DVT    
Sbjct: 128 TVSLDGMPLQCYYLGGGHATDNIVVWLPTENILFGGCMLKDNQTTSIGNISDADVTAWPK 187

Query: 182 SLCAIGNEGILALMCDST 199
           +L     + + A    + 
Sbjct: 188 TL-----DKVKAKFPSAR 200


>3h3e_A Uncharacterized protein TM1679; structural genomics, surface
           entropy reduction, ISFI, beta- lactamase superfamily,
           PSI-2; 2.75A {Thermotoga maritima}
          Length = 267

 Score = 36.0 bits (82), Expect = 0.025
 Identities = 26/192 (13%), Positives = 56/192 (29%), Gaps = 23/192 (11%)

Query: 70  AIFITHAHEDHYGALHDL---WSFLHVPVYASPFAIGLLEAKRVYERVSKKIPCISFQAG 126
            + I+H H DH G L  L     +L        ++          E +         +  
Sbjct: 64  DVLISHGHYDHAGGLLYLSGKRVWLRKEALDQKYSGERYAGADWNEVLYYNTGKFVIERI 123

Query: 127 DKVDVGAFSIESVRVNHSIPETMALVIRSPVGNIVHTGDWKLDDDAILGDVTDKDSLCAI 186
            ++    F +    +   +          P G+     + +   D       D+ +L   
Sbjct: 124 TEIGKNMFLLGPANLRGKV----------PTGDFFVERNGERRKD----LFEDEQTLVVR 169

Query: 187 GNEGILALMCDSTNAMREGTCISEKGIKKNIYDIMKNAKGCVLVTTFSSSVSRIRSIIDI 246
             EG++ +   S   +        +   + I  ++             SS   I  I+  
Sbjct: 170 TKEGLVVITGCSHRGIDNILLDIAETFNERIKMVVG------GFHLLKSSDDEIEKIVKA 223

Query: 247 AEQIGRKIVLLG 258
             ++G + V+  
Sbjct: 224 FNELGVETVVPC 235


>1xm8_A Glyoxalase II; structural genomics, protein structure initiative,
           CESG, AT2G31350, metallo-hydrolase, zinc/iron binuclear
           center; 1.74A {Arabidopsis thaliana} SCOP: d.157.1.2
           PDB: 2q42_A
          Length = 254

 Score = 35.6 bits (81), Expect = 0.032
 Identities = 25/145 (17%), Positives = 42/145 (28%), Gaps = 27/145 (18%)

Query: 24  YGY--GSPSSRKWIMIDCGVSFPKDDLPGVDLVFPDITFIMKERKNLMAIFITHAHEDHY 81
           Y Y      +    ++D                 P I  + +  +NL  I  TH H DH 
Sbjct: 13  YAYILHDEDTGTVGVVDPSE------------AEPIIDSLKRSGRNLTYILNTHHHYDHT 60

Query: 82  GALHDLWSFLHVPVYASPFAIGLLEAKRVYERVSKKIPCISFQAGDKVDVGAFSIESVRV 141
           G   +L       V  S             ++       ++ + GDK       +  +  
Sbjct: 61  GGNLELKDRYGAKVIGSA-----------MDKDRIPGIDMALKDGDKWMFAGHEVHVMDT 109

Query: 142 NHSIPETMALVIRSPVGNIVHTGDW 166
                  ++L    P    + TGD 
Sbjct: 110 PGHTKGHISLYF--PGSRAIFTGDT 132


>2zo4_A Metallo-beta-lactamase family protein; hydrolase; 2.10A {Thermus
          thermophilus HB8}
          Length = 317

 Score = 35.1 bits (79), Expect = 0.046
 Identities = 9/70 (12%), Positives = 21/70 (30%), Gaps = 4/70 (5%)

Query: 30 SSRKWIMIDCGVSFPKDDLPGVDLVFPDITFIMKERKNLMAIFITHAHEDHYGALHDLWS 89
           + +  ++D  +            +   +  +    +++  I +TH H DHYG       
Sbjct: 29 GAGEVALVDTALGTR----AARGALELHLAELGLCFQDVKTILLTHHHPDHYGLSGFFEG 84

Query: 90 FLHVPVYASP 99
                    
Sbjct: 85 LGARVFLHEE 94


>1zkp_A Hypothetical protein BA1088; zinc binding protein, structural
           genomics, PSI, protein structure initiative; 1.50A
           {Bacillus anthracis str} SCOP: d.157.1.9
          Length = 268

 Score = 34.3 bits (77), Expect = 0.066
 Identities = 12/84 (14%), Positives = 24/84 (28%), Gaps = 23/84 (27%)

Query: 33  KWIMIDCGVSFPKDDLPGVDLVFPDITFIMKERKNLMAIFITHAHEDHYGALHDLWSFLH 92
             +++DCG          +               ++ A+ ++H H DH   +  L     
Sbjct: 53  FRLLVDCGSGVLAQLQKYITP------------SDIDAVVLSHYHHDHVADIGVLQYARL 100

Query: 93  -----------VPVYASPFAIGLL 105
                      +P+Y   F     
Sbjct: 101 ITSATKGQLPELPIYGHTFDENGF 124


>2cfu_A SDSA1; SDS-hydrolase, lactamase, hydrolase; HET: 1DB; 1.9A
           {Pseudomonas aeruginosa} SCOP: d.106.1.3 d.157.1.13 PDB:
           2cfz_A* 2cg2_A 2cg3_A*
          Length = 658

 Score = 34.3 bits (78), Expect = 0.081
 Identities = 12/52 (23%), Positives = 24/52 (46%), Gaps = 6/52 (11%)

Query: 34  WIMIDCGVSFPKDDLPGVDLVFPDITFIMKERKNLMAIFITHAHEDHYGALH 85
           WI++D   + P       +LV  ++       + +  +  +HAH DH+G + 
Sbjct: 134 WIVVDTLTT-PATARAAYELVSRELG-----ERPIRTVIYSHAHADHFGGVR 179


>3bv6_A Metal-dependent hydrolase; metallo protein, beta-lactamase like
           fold, MCSG, structural genomics, PSI-2; 1.80A {Vibrio
           cholerae o1 biovar eltor str}
          Length = 379

 Score = 32.4 bits (73), Expect = 0.29
 Identities = 10/81 (12%), Positives = 23/81 (28%), Gaps = 1/81 (1%)

Query: 70  AIFITHAHEDHYGALHDLWSFLHVPVYASPFAIGLLEAKRVYERVSKKIPCISFQAGDKV 129
           A+  +H H DH           +   +             +   V ++   +  + GD +
Sbjct: 136 AVLASHDHADHIDVNVAAAVLQNCGEHVKFIGPQACVDLWLGWGVPQERCIV-AKVGDVL 194

Query: 130 DVGAFSIESVRVNHSIPETMA 150
           ++G   I  +           
Sbjct: 195 EIGDVKIRVLDSFDRTALVTL 215


>2wyl_A L-ascorbate-6-phosphate lactonase ULAG; hydrolase; 2.59A
           {Escherichia coli} PDB: 2wym_A*
          Length = 360

 Score = 32.1 bits (72), Expect = 0.30
 Identities = 18/100 (18%), Positives = 27/100 (27%), Gaps = 9/100 (9%)

Query: 70  AIFITHAHEDHYG--ALHDLWSFLHV--PVYASPFAIGLLEAKRVYERVSKKIPCISFQA 125
           A+  TH H DH        +        P       + L     V +       CI  + 
Sbjct: 112 AVLATHDHNDHIDVNVAAAVMQNCADDVPFIGPKTCVDLWIGWGVPKE-----RCIVVKP 166

Query: 126 GDKVDVGAFSIESVRVNHSIPETMALVIRSPVGNIVHTGD 165
           GD V V    I ++              +   G +    D
Sbjct: 167 GDVVKVKDIEIHALDAFDRTALITLPADQKAAGVLPDGMD 206


>3iog_A Beta-lactamase; hydrolase, antibiotic resistance, metal-binding,
           periplasm,; HET: SDF; 1.41A {Aeromonas hydrophila} PDB:
           1x8i_A 3fai_A* 3iof_A* 1x8h_A 2qds_A* 2gkl_A* 1x8g_A*
           3f9o_A
          Length = 227

 Score = 31.6 bits (71), Expect = 0.53
 Identities = 18/144 (12%), Positives = 48/144 (33%), Gaps = 17/144 (11%)

Query: 31  SRKWIMIDCGVSFPKDDLPGVDLVFPDITFIMKERKNLMAIFITHAHEDHYGALHDLWSF 90
           ++   ++     +  D    +  +   ++     RK ++ +  T+ H D  G     W  
Sbjct: 31  AKGVTVVGAT--WTPDTARELHKLIKRVS-----RKPVLEVINTNYHTDRAGGNAY-WKS 82

Query: 91  LHVPVYASPFAIGLL-----EAKRVYERVSKKIPCISFQAGDKVDVGAFSIESVRVNHSI 145
           +   V ++     L+     E      +   + P +     + V  G F+++  +V    
Sbjct: 83  IGAKVVSTRQTRDLMKSDWAEIVAFTRKGLPEYPDLPLVLPNVVHDGDFTLQEGKVRAFY 142

Query: 146 PETM----ALVIRSPVGNIVHTGD 165
                    + +  P   +++ G 
Sbjct: 143 AGPAHTPDGIFVYFPDEQVLYGGC 166


>3md7_A Beta-lactamase-like; ssgcid, hydrolase, structural genomics,
           seattle structural genomics center for infectious
           disease; HET: 5GP TLA; 1.27A {Brucella melitensis biovar
           abortus}
          Length = 293

 Score = 31.1 bits (69), Expect = 0.66
 Identities = 22/158 (13%), Positives = 42/158 (26%), Gaps = 22/158 (13%)

Query: 21  MALYGYGSPSSRKWIMIDCGVSFPKDDLPGVDLVFPDITFIMKER--KNLMAIFITHAHE 78
           + +  Y +  +   ++ID G               PD    M +     L A   TH H 
Sbjct: 66  LLVERYDAEGNNTVVVIDTG---------------PDFRMQMIDSGVHMLDAAVYTHPHA 110

Query: 79  DHYGALHDLWSFLH-----VPVYASPFAIGLLEAKRVYERVSKKIPCISFQAGDKVDVGA 133
           DH   + DL +++      + VYA+      L     Y   +                  
Sbjct: 111 DHIHGIDDLRTYVVDNGRLMDVYANRLTRNRLYDTFGYCFETPVGSSYPPILSMHDIAPE 170

Query: 134 FSIESVRVNHSIPETMALVIRSPVGNIVHTGDWKLDDD 171
                     +I       +   + ++       +   
Sbjct: 171 TPFSIEGAGGAIRFEPFSQVHGDIESLGFRIGSVVYCT 208


>2pvf_A Fibroblast growth factor receptor 2; kinase domain fold consisting
           of N- and C-lobes, transferase; HET: PTR ABG; 1.80A
           {Homo sapiens} PDB: 3cly_A* 2pzr_A* 2pzp_A* 2pvy_A*
           2pz5_A* 2q0b_A* 2pwl_A* 2py3_A* 1gjo_A 1oec_A* 3b2t_A*
           3gql_A* 3gqi_A* 1fgk_A 1fgi_A* 1agw_A 2fgi_A* 3c4f_A*
          Length = 334

 Score = 30.9 bits (69), Expect = 0.86
 Identities = 41/276 (14%), Positives = 82/276 (29%), Gaps = 57/276 (20%)

Query: 311 QLSRGEMRNVKLAEKDTVIFSSRAIPGNEVAIGHIKNRLVEQGVRVIAEDAECPVHVSGH 370
            L  G    V +A +   I   +      VA+  +K+   E+ +  +  + E    +  H
Sbjct: 42  PLGEGAFGQVVMA-EAVGIDKDKPKEAVTVAVKMLKDDATEKDLSDLVSEMEMMKMIGKH 100

Query: 371 PYPNDLKRMYQWIRPQVLV---AIHGEPLHLVAHKELALQEGIACVPPVRNGKMLRLFPD 427
               +L        P  ++   A  G     +  +     E    +  V   +M   F D
Sbjct: 101 KNIINLLGACTQDGPLYVIVEYASKGNLREYLRARRPPGMEYSYDINRVPEEQM--TFKD 158

Query: 428 PIEIIDEVVHGL-----------------FLKDGFLIGKFADLGIAKRRQLSF------- 463
            +    ++  G+                  L     + K AD G+A+             
Sbjct: 159 LVSCTYQLARGMEYLASQKCIHRDLAARNVLVTENNVMKIADFGLARDINNIDYYKKTTN 218

Query: 464 ----VGHLSVNVLLDNHYNIFGVP--------EIVDIGIPAYDGDGGKIHKLLLKTVITT 511
               V  ++   L D  Y              EI  +G   Y G                
Sbjct: 219 GRLPVKWMAPEALFDRVYTHQSDVWSFGVLMWEIFTLGGSPYPGI--------------P 264

Query: 512 VVDLPQFRRKDLKLLR-ESISSALRSLLKKVWGKKP 546
           V +L +  ++  ++ +  + ++ L  +++  W   P
Sbjct: 265 VEELFKLLKEGHRMDKPANCTNELYMMMRDCWHAVP 300


>2psq_A Fibroblast growth factor receptor 2; kinase domain fold consisting
           of N- and C-lobes, transferase; 2.40A {Homo sapiens}
           SCOP: d.144.1.7 PDB: 1xr0_A
          Length = 370

 Score = 29.8 bits (66), Expect = 1.6
 Identities = 44/275 (16%), Positives = 84/275 (30%), Gaps = 55/275 (20%)

Query: 311 QLSRGEMRNVKLAEKDTVIFSSRAIPGNEVAIGHIKNRLVEQGVRVIAEDAECPVHVSGH 370
            L  G    V +A +   I   +      VA+  +K+   E+ +  +  + E    +  H
Sbjct: 88  PLGEGCFGQVVMA-EAVGIDKDKPKEAVTVAVKMLKDDATEKDLSDLVSEMEMMKMIGKH 146

Query: 371 PYPNDLKRMYQWIRPQVLV---AIHGEPLHLVAHKELALQEGIACVPPVRNGKMLRLFPD 427
               +L        P  ++   A  G     +  +     E    +  V   +M   F D
Sbjct: 147 KNIINLLGACTQDGPLYVIVEYASKGNLREYLRARRPPGMEYSYDINRVPEEQM--TFKD 204

Query: 428 PIEIIDEVVHGL-----------------FLKDGFLIGKFADLGIAK--------RRQLS 462
            +    ++  G+                  L     + K AD G+A+        ++  +
Sbjct: 205 LVSCTYQLARGMEYLASQKCIHRDLAARNVLVTENNVMKIADFGLARDINNIDYYKKTTN 264

Query: 463 FVG---HLSVNVLLDNHYNI------FGV--PEIVDIGIPAYDGDGGKIHKLLLKTVITT 511
                  ++   L D  Y        FGV   EI  +G   Y G    + +L        
Sbjct: 265 GRLPVKWMAPEALFDRVYTHQSDVWSFGVLMWEIFTLGGSPYPGI--PVEELFKLLKEGH 322

Query: 512 VVDLPQFRRKDLKLLRESISSALRSLLKKVWGKKP 546
            +D P            + ++ L  +++  W   P
Sbjct: 323 RMDKP-----------ANCTNELYMMMRDCWHAVP 346


>3esh_A Protein similar to metal-dependent hydrolase; structural genomics,
           PSI-2, protein structure initiative; 2.50A
           {Staphylococcus aureus subsp}
          Length = 280

 Score = 30.0 bits (66), Expect = 1.7
 Identities = 12/71 (16%), Positives = 19/71 (26%), Gaps = 8/71 (11%)

Query: 33  KWIMIDCGVSFPKDDLPGVDLVFPDITFIMKERKNLMA--------IFITHAHEDHYGAL 84
             ++ID G+   K     +     D    +                + +TH H DH   L
Sbjct: 58  YNLIIDAGIGNGKLSEKQLRNFGVDEESHIIADLANYNLTPKDIDYVLMTHMHFDHAAGL 117

Query: 85  HDLWSFLHVPV 95
            D         
Sbjct: 118 TDQAGHAIFEN 128


>3dha_A N-acyl homoserine lactone hydrolase; zinc bimetallohydrolase,
           quorum quenching, alternative binding site, product
           complex; HET: C6L GOL; 0.95A {Bacillus thuringiensis
           serovarkurstaki} PDB: 3dhb_A* 3dhc_A* 2a7m_A* 2br6_A
           2btn_A
          Length = 254

 Score = 28.8 bits (63), Expect = 3.5
 Identities = 31/195 (15%), Positives = 58/195 (29%), Gaps = 34/195 (17%)

Query: 1   MKNEELVFLPLG-------------GVGEIGMNMALYGYGSPSSRKWIMIDCGVSFPKDD 47
           M  ++L F+P G               G++ +N+ ++ Y   +    I++D G+     +
Sbjct: 5   MTVKKLYFIPAGRCMLDHSSVNSALTPGKL-LNLPVWCYLLETEEGPILVDTGMPESAVN 63

Query: 48  LPGV---DLVFPDITFIMKERKNLMA--------------IFITHAHEDHYGALHDLWSF 90
             G+     V   I   M E   ++               I  +H H DH G      + 
Sbjct: 64  NEGLFNGTFVEGQILPKMTEEDRIVNILKRVGYEPDDLLYIISSHLHFDHAGGNGAFTNT 123

Query: 91  LHVPVYASPFAIGLLEAKRVYERVSKKIPCISFQAGDKVDVGAFSIESVRVNHSIPETMA 150
             +           L  +   +             GD   V    +      HS      
Sbjct: 124 PIIVQR--TEYEAALHREEYMKECILPHLNYKIIEGDYEVVPGVQLL-YTPGHSPGHQSL 180

Query: 151 LVIRSPVGNIVHTGD 165
            +     G+++ T D
Sbjct: 181 FIETEQSGSVLLTID 195


>2fhx_A SPM-1; metallo-beta-lactamase, dinuclear zinc, antibiotic
           resistance, structure, hydrolase, metal binding protein;
           1.90A {Pseudomonas aeruginosa}
          Length = 246

 Score = 28.8 bits (63), Expect = 3.6
 Identities = 7/37 (18%), Positives = 10/37 (27%), Gaps = 1/37 (2%)

Query: 70  AIFITHAHEDHYGALHDLWSFLHVPVYASPFAIGLLE 106
               TH H D  G        +    ++S     L  
Sbjct: 71  VAINTHFHLDGTGGNEIY-KKMGAETWSSDLTKQLRL 106


>3niv_A Glutathione S-transferase; structural genomics, PSI-2, protein
          structure initiative, NE SGX research center for
          structural genomics; 2.30A {Legionella pneumophila
          subsp}
          Length = 222

 Score = 28.6 bits (63), Expect = 4.1
 Identities = 5/28 (17%), Positives = 13/28 (46%), Gaps = 3/28 (10%)

Query: 19 MNMALYGY-GSPSSRK--WIMIDCGVSF 43
          M++ LY Y  S +  +    +    +++
Sbjct: 1  MSLILYDYFRSTACYRVRIALNLKKIAY 28


>3l9w_A Glutathione-regulated potassium-efflux system Pro linker, ancillary
           protein KEFF; potassium channel regulation, domains,
           antiport; HET: FMN AMP GSH; 1.75A {Escherichia coli}
           PDB: 3eyw_A* 3l9x_A*
          Length = 413

 Score = 28.3 bits (63), Expect = 4.1
 Identities = 39/244 (15%), Positives = 68/244 (27%), Gaps = 36/244 (14%)

Query: 167 KLDDDAILGDVTDKDSLCAIGNEG----ILALMCDSTNAMREGTCISEKGIKKNI----- 217
           K       GD T  D L + G       I A+    TN              + I     
Sbjct: 45  KFGMKVFYGDATRMDLLESAGAAKAEVLINAIDDPQTNLQLTEMVKEHFPHLQIIARARD 104

Query: 218 ---YDIMKNAKGCVLVTTFSSSVSRIRSIIDIAEQIGRKI-VLLGSSLKRVVSVAIDVGI 273
              Y  ++ A G              R   + A + GR     LG         A     
Sbjct: 105 VDHYIRLRQA-GVEKP---------ERETFEGALKTGRLALESLGLGPYEARERADV--- 151

Query: 274 IKKDQLFLSDESFGLYPREQLIVIATGSQGEPRSALAQLSRGEMRNVKLAEKD--TVIFS 331
            ++  + + +E   +    +             + L+++   +  ++ L ++        
Sbjct: 152 FRRFNIQMVEEMAMVENDTKARAAVY---KRTSAMLSEIITEDREHLSLIQRHGWQGTEE 208

Query: 332 SRAIPGNEVAIGHIKNRLVEQGVRVIAEDAECPVHVSGHPYPNDL---KRMYQWIRPQVL 388
            +   GN       K      G+          + +  HPYP+     KRM +  R    
Sbjct: 209 GKHT-GNMADEPETKPSSTSGGLVPRGSSGMILI-IYAHPYPHHSHANKRMLEQARTLEG 266

Query: 389 VAIH 392
           V I 
Sbjct: 267 VEIR 270


>1y44_A Ribonuclease Z; zinc-dependent metal hydrolase; HET: MES; 2.10A
          {Bacillus subtilis} SCOP: d.157.1.7 PDB: 2fk6_A*
          Length = 320

 Score = 28.2 bits (61), Expect = 4.5
 Identities = 15/65 (23%), Positives = 17/65 (26%), Gaps = 19/65 (29%)

Query: 32 RKWIMIDCGVSFPKDDLPGVDLVFPDITFIMKERK----NLMAIFITHAHEDHYGALHDL 87
          R   + DCG                     M         +  IFITH H DH   L  L
Sbjct: 31 RSVWLFDCG---------------EATQHQMLHTTIKPRKIEKIFITHMHGDHVYGLPGL 75

Query: 88 WSFLH 92
               
Sbjct: 76 LGSRS 80


>1ek6_A UDP-galactose 4-epimerase; short-chain dehydrogenase, galactosemia,
           isomerase; HET: NAI UPG; 1.50A {Homo sapiens} SCOP:
           c.2.1.2 PDB: 1ek5_A* 1hzj_A* 1i3k_A* 1i3l_A* 1i3m_A*
           1i3n_A*
          Length = 348

 Score = 27.7 bits (60), Expect = 6.1
 Identities = 19/99 (19%), Positives = 31/99 (31%), Gaps = 3/99 (3%)

Query: 342 IG-HIKNRLVEQGVRVIAEDAECPVHVSGHPYPNDLKRMYQWIRPQVLVAIHGEPLHLVA 400
           IG H    L+E G   +  D        G   P  L+R+ +     V      + L   A
Sbjct: 14  IGSHTVLELLEAGYLPVVIDNFHNAFRGGGSLPESLRRVQELTGRSVEF-EEMDILDQGA 72

Query: 401 HKELALQEGIACVPPVRNGKMLRL-FPDPIEIIDEVVHG 438
            + L  +     V      K +      P++     + G
Sbjct: 73  LQRLFKKYSFMAVIHFAGLKAVGESVQKPLDYYRVNLTG 111


>2if1_A EIF1, SUI1; translation initiation factor; NMR {Homo sapiens} SCOP:
           d.64.1.1
          Length = 126

 Score = 27.6 bits (61), Expect = 6.9
 Identities = 22/104 (21%), Positives = 40/104 (38%), Gaps = 10/104 (9%)

Query: 176 DVTDKDSLCAIGNEGILALMCDSTNAMREGTCISEKGIKKNIYDIMKNAKGCVLVTTFSS 235
           D +  D L   G E  + +     N  +  T +       +   ++K  K       F+ 
Sbjct: 28  DASKGDDLLPAGTEDYIHIRIQQRNGRKTLTTVQGIADDYDKKKLVKAFK-----KKFAC 82

Query: 236 SVSRIRSIIDIAEQIGRKIVLLGSSLKRVVSVAIDVGIIKKDQL 279
           + +    +I+  E  G  I L G   K +    +++G+ K DQL
Sbjct: 83  NGT----VIEHPEY-GEVIQLQGDQRKNICQFLVEIGLAKDDQL 121


>1kez_A Erythronolide synthase; polyketide synthase, modular polyketide
           synthase, thioesterase, 6-DEB, TE, DEBS, alpha,
           beta-hydrolase; 2.80A {Saccharopolyspora erythraea}
           SCOP: c.69.1.22 PDB: 1mo2_A
          Length = 300

 Score = 27.7 bits (61), Expect = 7.8
 Identities = 9/54 (16%), Positives = 17/54 (31%), Gaps = 2/54 (3%)

Query: 348 RLVEQGVRVIAEDAECPVHVSGHPYPNDLKRMYQWIRPQVLVAIHGEPLHLVAH 401
             +     V A     P +  G P P+ +  +       V+     +P  +  H
Sbjct: 90  GALRGIAPVRAVPQ--PGYEEGEPLPSSMAAVAAVQADAVIRTQGDKPFVVAGH 141


  Database: pdb70
    Posted date:  Jan 26, 2011 11:21 AM
  Number of letters in database: 5,693,230
  Number of sequences in database:  24,244
  
Lambda     K      H
   0.322    0.141    0.415 

Gapped
Lambda     K      H
   0.267   0.0496    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24244
Number of Hits to DB: 4,976,724
Number of extensions: 246510
Number of successful extensions: 787
Number of sequences better than 10.0: 1
Number of HSP's gapped: 737
Number of HSP's successfully gapped: 67
Length of query: 559
Length of database: 5,693,230
Length adjustment: 97
Effective length of query: 462
Effective length of database: 3,341,562
Effective search space: 1543801644
Effective search space used: 1543801644
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 59 (27.1 bits)