BLASTP 2.2.22 [Sep-27-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= gi|254780869|ref|YP_003065282.1| beta-lactamase
domain-containing protein [Candidatus Liberibacter asiaticus str.
psy62]
(559 letters)
Database: las_proteome
1233 sequences; 328,796 total letters
Searching...................................................done
>gi|254780869|ref|YP_003065282.1| beta-lactamase domain-containing protein [Candidatus Liberibacter
asiaticus str. psy62]
Length = 559
Score = 1137 bits (2940), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 559/559 (100%), Positives = 559/559 (100%)
Query: 1 MKNEELVFLPLGGVGEIGMNMALYGYGSPSSRKWIMIDCGVSFPKDDLPGVDLVFPDITF 60
MKNEELVFLPLGGVGEIGMNMALYGYGSPSSRKWIMIDCGVSFPKDDLPGVDLVFPDITF
Sbjct: 1 MKNEELVFLPLGGVGEIGMNMALYGYGSPSSRKWIMIDCGVSFPKDDLPGVDLVFPDITF 60
Query: 61 IMKERKNLMAIFITHAHEDHYGALHDLWSFLHVPVYASPFAIGLLEAKRVYERVSKKIPC 120
IMKERKNLMAIFITHAHEDHYGALHDLWSFLHVPVYASPFAIGLLEAKRVYERVSKKIPC
Sbjct: 61 IMKERKNLMAIFITHAHEDHYGALHDLWSFLHVPVYASPFAIGLLEAKRVYERVSKKIPC 120
Query: 121 ISFQAGDKVDVGAFSIESVRVNHSIPETMALVIRSPVGNIVHTGDWKLDDDAILGDVTDK 180
ISFQAGDKVDVGAFSIESVRVNHSIPETMALVIRSPVGNIVHTGDWKLDDDAILGDVTDK
Sbjct: 121 ISFQAGDKVDVGAFSIESVRVNHSIPETMALVIRSPVGNIVHTGDWKLDDDAILGDVTDK 180
Query: 181 DSLCAIGNEGILALMCDSTNAMREGTCISEKGIKKNIYDIMKNAKGCVLVTTFSSSVSRI 240
DSLCAIGNEGILALMCDSTNAMREGTCISEKGIKKNIYDIMKNAKGCVLVTTFSSSVSRI
Sbjct: 181 DSLCAIGNEGILALMCDSTNAMREGTCISEKGIKKNIYDIMKNAKGCVLVTTFSSSVSRI 240
Query: 241 RSIIDIAEQIGRKIVLLGSSLKRVVSVAIDVGIIKKDQLFLSDESFGLYPREQLIVIATG 300
RSIIDIAEQIGRKIVLLGSSLKRVVSVAIDVGIIKKDQLFLSDESFGLYPREQLIVIATG
Sbjct: 241 RSIIDIAEQIGRKIVLLGSSLKRVVSVAIDVGIIKKDQLFLSDESFGLYPREQLIVIATG 300
Query: 301 SQGEPRSALAQLSRGEMRNVKLAEKDTVIFSSRAIPGNEVAIGHIKNRLVEQGVRVIAED 360
SQGEPRSALAQLSRGEMRNVKLAEKDTVIFSSRAIPGNEVAIGHIKNRLVEQGVRVIAED
Sbjct: 301 SQGEPRSALAQLSRGEMRNVKLAEKDTVIFSSRAIPGNEVAIGHIKNRLVEQGVRVIAED 360
Query: 361 AECPVHVSGHPYPNDLKRMYQWIRPQVLVAIHGEPLHLVAHKELALQEGIACVPPVRNGK 420
AECPVHVSGHPYPNDLKRMYQWIRPQVLVAIHGEPLHLVAHKELALQEGIACVPPVRNGK
Sbjct: 361 AECPVHVSGHPYPNDLKRMYQWIRPQVLVAIHGEPLHLVAHKELALQEGIACVPPVRNGK 420
Query: 421 MLRLFPDPIEIIDEVVHGLFLKDGFLIGKFADLGIAKRRQLSFVGHLSVNVLLDNHYNIF 480
MLRLFPDPIEIIDEVVHGLFLKDGFLIGKFADLGIAKRRQLSFVGHLSVNVLLDNHYNIF
Sbjct: 421 MLRLFPDPIEIIDEVVHGLFLKDGFLIGKFADLGIAKRRQLSFVGHLSVNVLLDNHYNIF 480
Query: 481 GVPEIVDIGIPAYDGDGGKIHKLLLKTVITTVVDLPQFRRKDLKLLRESISSALRSLLKK 540
GVPEIVDIGIPAYDGDGGKIHKLLLKTVITTVVDLPQFRRKDLKLLRESISSALRSLLKK
Sbjct: 481 GVPEIVDIGIPAYDGDGGKIHKLLLKTVITTVVDLPQFRRKDLKLLRESISSALRSLLKK 540
Query: 541 VWGKKPLVTVFINKISRQR 559
VWGKKPLVTVFINKISRQR
Sbjct: 541 VWGKKPLVTVFINKISRQR 559
>gi|254780624|ref|YP_003065037.1| ubiquinone/menaquinone biosynthesis methyltransferase [Candidatus
Liberibacter asiaticus str. psy62]
Length = 265
Score = 30.8 bits (68), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 14/56 (25%), Positives = 29/56 (51%)
Query: 39 CGVSFPKDDLPGVDLVFPDITFIMKERKNLMAIFITHAHEDHYGALHDLWSFLHVP 94
C ++F ++P + LV +I I+K L+ + + + ++D+WSF +P
Sbjct: 144 CTLAFGIRNMPHITLVLQEIYRILKCGGRLLVLEFSEVQGPVFKKIYDMWSFKVIP 199
>gi|254780655|ref|YP_003065068.1| transketolase [Candidatus Liberibacter asiaticus str. psy62]
Length = 673
Score = 25.8 bits (55), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 23/88 (26%), Positives = 34/88 (38%), Gaps = 5/88 (5%)
Query: 345 IKNRLVEQGVRVIAEDAEC---PVHVSGHPYPNDLKRMYQWIRPQV-LVAIHG-EPLHLV 399
R + GVR A A +H PY + RP + L ++ G +H++
Sbjct: 410 FSGRYLHYGVREHAMAAAMNGIALHKGLAPYSGTFMVFSDYSRPAIRLASLMGIRVIHVL 469
Query: 400 AHKELALQEGIACVPPVRNGKMLRLFPD 427
H + L E PV + LR PD
Sbjct: 470 THDSIGLGEDGPTHQPVEHLAALRAIPD 497
>gi|254780163|ref|YP_003064576.1| ATP-dependent Clp protease ATP-binding subunit [Candidatus
Liberibacter asiaticus str. psy62]
Length = 798
Score = 25.8 bits (55), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 16/61 (26%), Positives = 27/61 (44%), Gaps = 5/61 (8%)
Query: 145 IPETMALVIRSPVGNIVHTGDWKLDDDAILGDVTDKDSLCAIGNEGILALMCDSTNAMRE 204
I +T+A + RS +HT + DDD++L ++ G E + + S R
Sbjct: 444 IKKTIASMNRS-----IHTTSFSRDDDSVLSNLEKNLGTVVYGQEEAIKKLSSSIKIARA 498
Query: 205 G 205
G
Sbjct: 499 G 499
>gi|254780991|ref|YP_003065404.1| excinuclease ABC subunit B [Candidatus Liberibacter asiaticus str.
psy62]
Length = 805
Score = 25.8 bits (55), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 21/92 (22%), Positives = 42/92 (45%), Gaps = 8/92 (8%)
Query: 200 NAMREGTCISEKGIKKNIYDIMKNAKGCVLVTTFSSSVSRIRSIIDIAEQIGRKIVLLGS 259
N +REG I E G+ I+ K L S S I++I A + K++L
Sbjct: 640 NLLREGLDIPECGL----VAILDADKEGFL----RSKTSLIQTIGRAARNVNSKVILYAD 691
Query: 260 SLKRVVSVAIDVGIIKKDQLFLSDESFGLYPR 291
++ + + +AID ++++ ++ + P+
Sbjct: 692 TITKSIQLAIDETTRRREKQLEHNKKHNINPQ 723
>gi|254780583|ref|YP_003064996.1| glyoxalase II [Candidatus Liberibacter asiaticus str. psy62]
Length = 256
Score = 25.4 bits (54), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 30/72 (41%), Gaps = 15/72 (20%)
Query: 68 LMAIFITHAHEDHYGALHDLWSFLHVPVYASPFAIGLLEAKRVYERVSKKIPCIS--FQA 125
L IF TH H DH A +L F + ++ G LE S KIP I
Sbjct: 49 LTHIFNTHHHIDHTRANLNLKKFFNCTIF------GPLEE-------SSKIPGIDHGLSD 95
Query: 126 GDKVDVGAFSIE 137
GD D G+ I+
Sbjct: 96 GDTFDFGSHPIK 107
>gi|254781178|ref|YP_003065591.1| cell division protein [Candidatus Liberibacter asiaticus str.
psy62]
Length = 304
Score = 25.4 bits (54), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 9/34 (26%), Positives = 21/34 (61%)
Query: 398 LVAHKELALQEGIACVPPVRNGKMLRLFPDPIEI 431
L+ + +Q+ + +P + + ++ RL+PD +EI
Sbjct: 118 LIFFDAIKIQKQLLALPWIAHAEIRRLYPDTMEI 151
>gi|254780768|ref|YP_003065181.1| hypothetical protein CLIBASIA_03295 [Candidatus Liberibacter
asiaticus str. psy62]
Length = 281
Score = 25.0 bits (53), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 11/34 (32%), Positives = 20/34 (58%)
Query: 205 GTCISEKGIKKNIYDIMKNAKGCVLVTTFSSSVS 238
GTC+ + +K++I MK+A+ + S+VS
Sbjct: 142 GTCVPNRDVKRDILAAMKSAEALSELDVGQSAVS 175
>gi|254781137|ref|YP_003065550.1| hypothetical protein CLIBASIA_05195 [Candidatus Liberibacter
asiaticus str. psy62]
Length = 195
Score = 24.6 bits (52), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 18/27 (66%)
Query: 250 IGRKIVLLGSSLKRVVSVAIDVGIIKK 276
+G +V+L SL R V A+D GI+K+
Sbjct: 75 LGGAMVMLDLSLARPVINAVDWGIVKR 101
>gi|254780644|ref|YP_003065057.1| hypothetical protein CLIBASIA_02655 [Candidatus Liberibacter
asiaticus str. psy62]
Length = 289
Score = 24.3 bits (51), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 10/33 (30%), Positives = 19/33 (57%)
Query: 217 IYDIMKNAKGCVLVTTFSSSVSRIRSIIDIAEQ 249
+YDI+KN +L+T + S+ +R + E+
Sbjct: 146 LYDIVKNRNDIMLLTKYGESLQILRRLTQETEK 178
>gi|254780758|ref|YP_003065171.1| hypothetical protein CLIBASIA_03225 [Candidatus Liberibacter
asiaticus str. psy62]
Length = 216
Score = 23.9 bits (50), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 25/53 (47%), Gaps = 9/53 (16%)
Query: 38 DCGVSFPKDDL------PGVDL-VFPDITFIMKERKNLMAIFITHAHEDHYGA 83
+C F ++ L PG DL + D+ I ++ I+ITH H DH G
Sbjct: 17 NCTFLFDEESLEAVVVDPGGDLDIIKDV--IQSRNFHVKQIWITHGHVDHVGG 67
Database: las_proteome
Posted date: Jun 5, 2011 6:30 PM
Number of letters in database: 328,796
Number of sequences in database: 1233
Lambda K H
0.322 0.141 0.415
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 367,372
Number of Sequences: 1233
Number of extensions: 15990
Number of successful extensions: 50
Number of sequences better than 100.0: 13
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 40
Number of HSP's gapped (non-prelim): 15
length of query: 559
length of database: 328,796
effective HSP length: 79
effective length of query: 480
effective length of database: 231,389
effective search space: 111066720
effective search space used: 111066720
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 41 (20.4 bits)