HHsearch alignment for GI: 254780870 and conserved domain: CHL00201
>CHL00201 syh histidine-tRNA synthetase; Provisional.
Probab=100.00 E-value=0 Score=374.31 Aligned_cols=382 Identities=17% Similarity=0.235 Sum_probs=250.1
Q ss_pred CCCCCHHCCCCHHHHHHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHH-CCC-CHHHHHHHCCHHHCCCCCCEECCCCCC
Q ss_conf 038811104316999999999999999866988973575124689877-197-311222210402137862000345554
Q gi|254780870|r 35 HSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVE-SGR-YDSYGKEMLRLADRNDKAMIYGPTHEE 112 (449)
Q Consensus 35 ~~~G~~~~lP~G~~i~~~le~~~r~~~~~~G~~ei~tP~l~~~eL~~~-SGh-~d~~~~em~~~~d~~~~~~~LrP~~~e 112 (449)
T Consensus 6 ~~kG~rD~lp~e~~~~~~i~~~i~~~f~~~Gf~~I~TP~lE~~e~~~~~~g~~~d~i~k~~y~f~D~~g~~l~LRpD~T~ 85 (424)
T CHL00201 6 PLRGTKDILPDEIEYWQFIHEKAATLLKLANYQEIRTPIFENTELFDRGIGEETDIVNKEMYRFFDRGNRSITLRPEGTA 85 (424)
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCCHHHHCCCCCCCCHHHHHHHEEEECCCCCEEEECCCCHH
T ss_conf 99999878999999999999999999998599250475404198862357874205666532545599988886787709
Q ss_pred CCCCCHH-HCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCEEEEEEECCEECCCHHHHHHHHHHHHHHHHHHHHHCCCH
Q ss_conf 3101100-001342013402641465334566767543453166874042211886887999999999874111100620
Q gi|254780870|r 113 VMTDIFR-SHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLK 191 (449)
Q Consensus 113 ~~~~i~~-~~~~SYr~LPlr~y~ig~~fR~E~rp~~GL~R~ReF~q~D~~~F~~~~e~~~~e~~~~~~~~~~i~~~lgl~ 191 (449)
T Consensus 86 piaR~~~~~~~~-~~~~P~r~~y~g~vfR~e-~pq~G--R~REF~Q~gvEiiG~~~~~aDaE---vi~l~~~~l~~lgl~ 158 (424)
T CHL00201 86 SIVRAFIENRMA-YHMRPQRLWYSGPMFRYE-RPQSG--RQRQFHQLGIEFIGSSDPRADME---VIHLAMTLFNELPVH 158 (424)
T ss_pred HHHHHHHHCCCC-CCCCCEEEEEECCEEECC-CCCCC--CCCHHHHCCEEEECCCCHHHHHH---HHHHHHHHHHHCCCC
T ss_conf 999999974765-579987899875478058-98788--64210414620006898287899---999999999865965
Q ss_pred HHHHHHCCHH-CCCC-----HHHHHHHHC--CCCCCEEEECCCCCCCCCCHHHCCHHHHHCCCCCCCCCCCCCCCCHHHC
Q ss_conf 1223311001-0131-----133434546--8677014310100347764111220121001122000136321201100
Q gi|254780870|r 192 SIPMRAESGP-IGGD-----LSHEFIVLA--DTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVH 263 (449)
Q Consensus 192 ~~~v~~~~~~-ig~~-----~s~e~~~~~--~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 263 (449)
T Consensus 159 ~~~i~in~~g~~~~~~~~~~~l~~~l~~~~~~l~~~~---~~~l~~~~~~~l~~~~~~~~~~l~~~~~l~~~~~~~~~~~ 235 (424)
T CHL00201 159 RLVLDINSIGKMEDRALYRDKLTEYLSQYNQDLDEDS---QNRLSSNPLRILDSKNGATQEILDMAPLLSDFLSLESEEH 235 (424)
T ss_pred CEEHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHCHHH---HHHHHHHHHHHHHHHCCHHHHHHHHCHHHHHHHCHHHHHH
T ss_conf 2010003325599888899999999999875437787---7532114899987306047999864432010204888999
Q ss_pred HHHHH---CCCC---CCCEEEEEEEE--CCCEEEC-------------CCCCCCCCEEEEECCCCCCCCCCCCCCCCCCC
Q ss_conf 02330---3587---65524321111--5814422-------------31122301158964777723233666344743
Q gi|254780870|r 264 NEKLF---DSLP---ENKRVSARGIE--VGHIFYF-------------GTKYSLPMSATFKGADGKDHYVQMGSYGIGAM 322 (449)
Q Consensus 264 ~~~~~---d~l~---~~~~~~~~~ie--~~~~f~l-------------G~~ys~~~~~~~~~~~g~~~~~~~g~~giG~~ 322 (449)
T Consensus 236 l~~l~~~l~~~~v~~~~D~slvRGLdYYTG~VFE~~~~~~~~~~si~gGGRYD~Lv~-----~fgg~~~PavG-faiGie 309 (424)
T CHL00201 236 FADVCEYLANLNIPYKINPKLVRGLDYYNDTAFEIKTLGSDAQDTVCGGGRYDSLVE-----QLGGPKTPAVG-WAIGIE 309 (424)
T ss_pred HHHHHHHHHHCCCCCCCCHHHHCCCCCCCCCEEEEEECCCCCCCCCCCCCCCHHHHH-----HCCCCCCCEEE-EEECHH
T ss_conf 999999998438764528777157676457369999678886234237877077899-----72999998577-884399
Q ss_pred CCHHHHHHCCCCCCCCCCCHHHCCCCCEEEECCCCHHHHHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHCCCCE
Q ss_conf 00233221023211111363320321102421788799999999999999986987999758979708678787489988
Q gi|254780870|r 323 RVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPL 402 (449)
Q Consensus 323 R~~~alle~~~d~~g~~wP~~iaP~~v~Iipi~~~~~~~~~~A~~i~~~Lr~~Gi~v~~D~r~~~iGkK~~~Ad~~gip~ 402 (449)
T Consensus 310 Rl~~~-l~~~-----~~~~~--~~~~~~v~~~~~---~~~~~~~~ia~~LR~~gi~~e~~~~~~~l~kql~~A~k~~~~~ 378 (424)
T CHL00201 310 RLLLI-AKDN-----ILLPK--PSIDFYIATKGN---VAIKIAFSIQRFLHNQGLKSELDLSSSNFSKQIKQAAKKRALA 378 (424)
T ss_pred HHHHH-HHHC-----CCCCC--CCCCEEEEECCH---HHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHCCCCE
T ss_conf 99999-9733-----77777--788589997784---9999999999999988993999708999999999999879999
Q ss_pred EEEECCCHHHCCEEEEEECCCCCEEE---EEHHHHHHHHHHHHH
Q ss_conf 99986240235718999989997878---619999999999987
Q gi|254780870|r 403 QVIVGSKFVSDSKVEIKHRLTGIRED---MSLEEVINYASHRFS 443 (449)
Q Consensus 403 ~iiiG~~el~~~~Vtir~r~tg~q~~---v~l~eli~~i~~~l~ 443 (449)
T Consensus 379 ~iiiG~~E~~~~~v~lK~l~sg~Q~~~~~~~l~~~i~~lkk~~~ 422 (424)
T CHL00201 379 CIILGDNEIARGAITIKWLDSQIQENSQYLNFKDFISYLKKKIL 422 (424)
T ss_pred EEEECCHHHHCCEEEEEECCCCCCCCEECCCHHHHHHHHHHHHH
T ss_conf 99985158868968998689988752302479999999999872