HHsearch alignment for GI: 254780870 and conserved domain: COG0124
>COG0124 HisS Histidyl-tRNA synthetase [Translation, ribosomal structure and biogenesis].
Probab=100.00 E-value=0 Score=399.19 Aligned_cols=388 Identities=21% Similarity=0.297 Sum_probs=263.2
Q ss_pred CCCCHHCCCCHHHHHHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHH-CCCC-HHHHHHHCCHHHCCCCCCEECCCCCCC
Q ss_conf 38811104316999999999999999866988973575124689877-1973-112222104021378620003455543
Q gi|254780870|r 36 SKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVE-SGRY-DSYGKEMLRLADRNDKAMIYGPTHEEV 113 (449)
Q Consensus 36 ~~G~~~~lP~G~~i~~~le~~~r~~~~~~G~~ei~tP~l~~~eL~~~-SGh~-d~~~~em~~~~d~~~~~~~LrP~~~e~ 113 (449)
T Consensus 7 prG~~D~lp~d~~~~~~i~~~~~~v~~~yGf~eI~TPifE~telf~r~~Ge~td~v~kemY~F~Dkggr~laLRp---e~ 83 (429)
T COG0124 7 PRGTRDFLPEDMALREYIESTIRKVFESYGFSEIRTPIFEYTELFARKSGEETDVVEKEMYTFKDKGGRSLALRP---EL 83 (429)
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCEECCCCCCCCHHHHHHCCCCCCCCCCCCEEEEEECCCCEEEECC---CC
T ss_conf 998665586778999999999999999809976557551116676201697433332102899948998898446---67
Q ss_pred CCCCHHHCCCC--CCCCCEEEEECCCCCCCCCCCCCCCCCCEEEEEEECCEECCCHHHHHHHHHHHHHHHHHHHHHCCCH
Q ss_conf 10110000134--2013402641465334566767543453166874042211886887999999999874111100620
Q gi|254780870|r 114 MTDIFRSHIKS--YRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLK 191 (449)
Q Consensus 114 ~~~i~~~~~~S--Yr~LPlr~y~ig~~fR~E~rp~~GL~R~ReF~q~D~~~F~~~~e~~~~e~~~~~~~~~~i~~~lgl~ 191 (449)
T Consensus 84 Tapv~R~~~en~~~~~~p~k~yy~g~vfRyE-rPQ~G--R~RqF~Q~g~E~iG~~~~~~DAE---vi~l~~~~l~~lGi~ 157 (429)
T COG0124 84 TAPVARAVAENKLDLPKPLKLYYFGPVFRYE-RPQKG--RYRQFYQFGVEVIGSDSPDADAE---VIALAVEILEALGIG 157 (429)
T ss_pred CHHHHHHHHHCCCCCCCCEEEEEECCEECCC-CCCCC--CCEEEEECCEEEECCCCCCCCHH---HHHHHHHHHHHCCCC
T ss_conf 4999999995622036872599833562378-88888--75036876767767998653899---999999999974998
Q ss_pred HHHHHHCCHHCCCCHHHHH--------HHHCCCCCC---EEEECCC---CCCCCCCHHHCCHHHHHCCCCCCCCCCCCCC
Q ss_conf 1223311001013113343--------454686770---1431010---0347764111220121001122000136321
Q gi|254780870|r 192 SIPMRAESGPIGGDLSHEF--------IVLADTGET---QVFCSKD---FMDFPIPSENTDFDDIISLNSIVEQWTAPYA 257 (449)
Q Consensus 192 ~~~v~~~~~~ig~~~s~e~--------~~~~~~~e~---~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (449)
T Consensus 158 ~~~l~iN~~g~l~~~~~~~gi~~~~~l~~~ldk~~k~~~~~L~e~~~~r~~~n~lr~ld~k~~~~~~~~~~ap~i~~~~~ 237 (429)
T COG0124 158 GFTLEINSRGILEGRLEYLGIDQREALLRYLDKLDKIGKLELDEDSKRRLKTNPLRVLDSKKDSDQELLKNAPELLDYLD 237 (429)
T ss_pred CEEEEECCCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHCCCHHHHHHHCCHHHHHHCC
T ss_conf 67999817644788877506116899999974654678987606655343114489998616328999852077640112
Q ss_pred CCHHHCHHH---HHCCCC---CCCEEEEEEEE--CCCEEEC-----CCCCCCCCEEEEEC---CCCCCCCCCCCCCCCCC
Q ss_conf 201100023---303587---65524321111--5814422-----31122301158964---77772323366634474
Q gi|254780870|r 258 ATSDVHNEK---LFDSLP---ENKRVSARGIE--VGHIFYF-----GTKYSLPMSATFKG---ADGKDHYVQMGSYGIGA 321 (449)
Q Consensus 258 ~~~d~~~~~---~~d~l~---~~~~~~~~~ie--~~~~f~l-----G~~ys~~~~~~~~~---~~g~~~~~~~g~~giG~ 321 (449)
T Consensus 238 ~e~~~~~~~v~~~L~~~g~~~~id~~lvRGLDYYtg~VFE~~~~~~~~~~sI~gGGRYD~Lv~~~gG~~~pavG-FaiGv 316 (429)
T COG0124 238 EESLEHLEELLALLDALGISYEIDPSLVRGLDYYTGTVFEAVTDGLGAQGSVCGGGRYDGLVEEFGGKPTPAVG-FAIGV 316 (429)
T ss_pred HHHHHHHHHHHHHHHHCCCCEEECCCEECCHHHCCCEEEEEEECCCCCCCCEECCCCCHHHHHHHCCCCCCCEE-EEHHH
T ss_conf 88999999999999983997798663003613206668999976886443155276615899984899887136-75179
Q ss_pred CCCHHHHHHCCCCCCCCCCCHHHCCCCCEEEECCCCHHHHHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHCCCC
Q ss_conf 30023322102321111136332032110242178879999999999999998698799975897970867878748998
Q gi|254780870|r 322 MRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFP 401 (449)
Q Consensus 322 ~R~~~alle~~~d~~g~~wP~~iaP~~v~Iipi~~~~~~~~~~A~~i~~~Lr~~Gi~v~~D~r~~~iGkK~~~Ad~~gip 401 (449)
T Consensus 317 eRl~~~l~~~~~----~~~~--~~~~~v~v~~~~~~~---~~~a~~la~~LR~~g~~~~~~~~~r~~k~q~k~A~~~g~~ 387 (429)
T COG0124 317 ERLILALEEEGK----EDPV--ETRVDVYVVPLGEDA---EPEALKLAQKLRAAGISVEVDYSGRKLKKQFKYADKLGAR 387 (429)
T ss_pred HHHHHHHHHCCC----CCCC--CCCCCEEEEECCCHH---HHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHCCCC
T ss_conf 999999997188----7776--777888999848615---9999999999997599489985565689999999877998
Q ss_pred EEEEECCCHHHCCEEEEEECCCCCEEEEEHHHHHHHHHHHH
Q ss_conf 89998624023571899998999787861999999999998
Q gi|254780870|r 402 LQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRF 442 (449)
Q Consensus 402 ~~iiiG~~el~~~~Vtir~r~tg~q~~v~l~eli~~i~~~l 442 (449)
T Consensus 388 ~~viiGe~E~~~g~v~vKdl~t~eq~~v~~~~~~~~~~~~~ 428 (429)
T COG0124 388 FAVILGEDELANGVVTVKDLATGEQEEVPLDELVEELKELL 428 (429)
T ss_pred EEEEECCHHHHCCCEEEEECCCCCCCEECHHHHHHHHHHHC
T ss_conf 89998525886597897347778633344999999987423