HHsearch alignment for GI: 254780870 and conserved domain: COG0423
>COG0423 GRS1 Glycyl-tRNA synthetase (class II) [Translation, ribosomal structure and biogenesis].
Probab=100.00 E-value=0 Score=416.17 Aligned_cols=394 Identities=22% Similarity=0.383 Sum_probs=265.7
Q ss_pred HHHHHHCCCEEC------CCCCHHCCCCHHHHHHHHHHHHHHHHHH--CCCEEEECCCCCCHHHHHHCCCCHHHHHHHCC
Q ss_conf 221353032000------3881110431699999999999999986--69889735751246898771973112222104
Q gi|254780870|r 24 KLMLRTGMIHQH------SKGIYSWLPLGQKALDNVNAIIREEQNR--TGAIEMSVPTLQSADLWVESGRYDSYGKEMLR 95 (449)
Q Consensus 24 ~ll~~~g~i~~~------~~G~~~~lP~G~~i~~~le~~~r~~~~~--~G~~ei~tP~l~~~eL~~~SGh~d~~~~em~~ 95 (449)
T Consensus 11 ~l~KrRGF~~~s~EIYGG~~GfyDYGPlG~~LK~nI~~~Wrk~fV~~~e~~~eIdtpii~p~~V~kASGHvd~FsDplv~ 90 (558)
T COG0423 11 ELAKRRGFVFPSSEIYGGLAGFYDYGPLGVELKNNIKEAWRKSFVTEREDVVEIDTPIILPEEVWKASGHVDKFSDPLVE 90 (558)
T ss_pred HHHHHCCCCCCCCCEECCCCCCCCCCCCCHHHHHHHHHHHHHHHEECCCCEEEECCCCCCCHHHHHHCCCCCCCCCCEEE
T ss_conf 99974523145310106734653257751899999999999986624687678425544868886434761346562043
Q ss_pred HHH--------------------------------------------------------------CCCCCCEECCCCCCC
Q ss_conf 021--------------------------------------------------------------378620003455543
Q gi|254780870|r 96 LAD--------------------------------------------------------------RNDKAMIYGPTHEEV 113 (449)
Q Consensus 96 ~~d--------------------------------------------------------------~~~~~~~LrP~~~e~ 113 (449)
T Consensus 91 c~~c~~~yRADHLiEe~l~~~~~~~~~~~e~~~ii~~~~ir~p~~g~~l~~v~~FNLMF~T~IGp~~~~~~YLRPETAQG 170 (558)
T COG0423 91 CKKCGERYRADHLIEEYLGKDGHGNMSPEELTEIIREYDIRCPECGGELNEVREFNLMFKTTIGPVEDSLGYLRPETAQG 170 (558)
T ss_pred CCCCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEEEEEEECCCCCCCEEECCCCCCH
T ss_conf 46245345336888987641034557878888888861775887688668750344666731457788632456510021
Q ss_pred CCCCHHHCCCCCC-CCCEEEEECCCCCCCCCCCCCCCCCCEEEEEEECCEECCCHHH-------------------H-HH
Q ss_conf 1011000013420-1340264146533456676754345316687404221188688-------------------7-99
Q gi|254780870|r 114 MTDIFRSHIKSYR-NLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEG-------------------S-KH 172 (449)
Q Consensus 114 ~~~i~~~~~~SYr-~LPlr~y~ig~~fR~E~rp~~GL~R~ReF~q~D~~~F~~~~e~-------------------~-~~ 172 (449)
T Consensus 171 iFvnFk~l~~~~r~klPFgiaQIGKsfRNEISPr~gl~R~REF~QaEiE~F-v~P~~k~~p~f~~v~~~~l~l~~~~~q~ 249 (558)
T COG0423 171 IFVNFKNLLEFARNKLPFGIAQIGKSFRNEISPRNGLFRTREFEQAEIEFF-VDPEEKEHPKFNEVKDEKLPLLPREAQE 249 (558)
T ss_pred HHHHHHHHHHHHCCCCCEEEEEECHHHCCCCCCCCCEEEHHHHHHHEEEEE-ECCCCCCCCCHHHHHHHHCCCCCHHHHH
T ss_conf 215369999975368984888623101465276653665123431201358-8777556863333321002466477764
Q ss_pred H----------------HHHHHHHHHHHHHHCCCHHHHHHHCCHHCCCCHHHHHHHHCCCCCCEEEECCCCCCCCCCHHH
Q ss_conf 9----------------999999874111100620122331100101311334345468677014310100347764111
Q gi|254780870|r 173 S----------------YNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSEN 236 (449)
Q Consensus 173 e----------------~~~~~~~~~~i~~~lgl~~~~v~~~~~~ig~~~s~e~~~~~~~~e~~~~~~~~~~~~~~~~~~ 236 (449)
T Consensus 250 ~~~~~EAv~~g~~~n~~~~y~~~~~~~fl~~lGI~~e~lRfrq-----h~~~E~A----------HYa~~twD~E~~~~- 313 (558)
T COG0423 250 EGTEEEAVEEGIVENETLAYFIARTKFFLEDLGIDPEKLRFRQ-----HLPEELA----------HYSKDTWDAEYKFP- 313 (558)
T ss_pred HHHHHHHHHCCEECCHHHHHHHHHHHHHHHHHCCCHHHHHHHH-----CCHHHHH----------HHHHCCEEEEEECC-
T ss_conf 1003455441545044389999999999998099989806652-----3908776----------65440232799637-
Q ss_pred CCHHHHHCCCCCCCCCCCCCCCCHHHCHH--------HHHCCCCCCCEEEEEEEECCCEEECCCCC--------------
Q ss_conf 22012100112200013632120110002--------33035876552432111158144223112--------------
Q gi|254780870|r 237 TDFDDIISLNSIVEQWTAPYAATSDVHNE--------KLFDSLPENKRVSARGIEVGHIFYFGTKY-------------- 294 (449)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~d~~~~--------~~~d~l~~~~~~~~~~ie~~~~f~lG~~y-------------- 294 (449)
T Consensus 314 --------~~gWiE~~GiAdRtdYDL~~H~k~s~~~l~v~~~~~ePk~v~~~~~~~~~~~-~gp~~k~~a~~v~~~~se~ 384 (558)
T COG0423 314 --------FGGWIELVGIADRTDYDLSRHSKFSGEDLTVFREYDEPKEVERWHSKVDLKF-LGPEFKKDAKKVAEALSEL 384 (558)
T ss_pred --------CCCEEEEEEEECCCCCCHHHHHHHCCCCCEEEECCCCCCEEEEEECCCCHHH-CCHHHHHHHHHHHHHHHHH
T ss_conf --------8866999986135544556565403666223321477622331001466210-3814455667776544566
Q ss_pred ----------CCCCE---E-EEECCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCC-------CCCCCHHHCCCCCEEEE
Q ss_conf ----------23011---5-896477772323366634474300233221023211-------11136332032110242
Q gi|254780870|r 295 ----------SLPMS---A-TFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGK-------GIIWPDSVAPFKISLIN 353 (449)
Q Consensus 295 ----------s~~~~---~-~~~~~~g~~~~~~~g~~giG~~R~~~alle~~~d~~-------g~~wP~~iaP~~v~Iip 353 (449)
T Consensus 385 ~~~~~~~~~~~~~~~~~~i~~~~~~~~e~~iP~VIEPSfGidRi~y~~l~~ay~~ee~~e~R~vLrl~p~lAPikvaVlP 464 (558)
T COG0423 385 EELEKELNGYEVSKDLVIIEEVEKVTGEKYIPHVIEPSFGIDRIFYALLEHAYTEEEVEEKRIVLRLPPDLAPIKVAVLP 464 (558)
T ss_pred HHHHHCCCCCCCCCCHHHHEEEEECCCCEECCCEECCCCCCHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCEEEEEEE
T ss_conf 66653047621353100100110024755067156567771189999998762011356650599558655852799996
Q ss_pred CCCCHHHHHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHCCCCEEEEECCCHHHCCEEEEEECCCCCEEEEEHHH
Q ss_conf 17887999999999999999869879997589797086787874899889998624023571899998999787861999
Q gi|254780870|r 354 IKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEE 433 (449)
Q Consensus 354 i~~~~~~~~~~A~~i~~~Lr~~Gi~v~~D~r~~~iGkK~~~Ad~~gip~~iiiG~~el~~~~Vtir~r~tg~q~~v~l~e 433 (449)
T Consensus 465 L~~k~~-l~~~a~~i~~~L~~~~~~v~yDdsG-sIGrRYrR~DEIGtPfcVTvD~eTleD~tVTiReRDs~~QvRv~i~e 542 (558)
T COG0423 465 LVKKDE-LVEIAKEIFEKLRELGFNVDYDDSG-SIGRRYRRQDEIGTPFCVTVDFETLEDNTVTIRERDSMEQVRVKIEE 542 (558)
T ss_pred EECCCC-HHHHHHHHHHHHHHCCCEEEECCCC-CHHHHHHHCCCCCCCEEEEECCCCCCCCCEEEEECCCHHEEEEEHHH
T ss_conf 022421-4689999999998539669862888-37665553344589618995477566784798625761204545999
Q ss_pred HHHHHHHHHHHC
Q ss_conf 999999998726
Q gi|254780870|r 434 VINYASHRFSNN 445 (449)
Q Consensus 434 li~~i~~~l~~~ 445 (449)
T Consensus 543 l~~~l~~~~~~~ 554 (558)
T COG0423 543 LADYLRELIKGG 554 (558)
T ss_pred HHHHHHHHHCCC
T ss_conf 999999984256