HHsearch alignment for GI: 254780870 and conserved domain: PRK00960
>PRK00960 seryl-tRNA synthetase; Provisional.
Probab=99.60 E-value=1.8e-14 Score=110.96 Aligned_cols=270 Identities=20% Similarity=0.297 Sum_probs=171.2
Q ss_pred HHHHHHHCCCEE-CCCCCHHCCCCHHHHHHHHHHHHHHH-HHHCCCEEEECCCCCCHHHHHHCCCCHHHHHHHCCHHH--
Q ss_conf 122135303200-03881110431699999999999999-98669889735751246898771973112222104021--
Q gi|254780870|r 23 HKLMLRTGMIHQ-HSKGIYSWLPLGQKALDNVNAIIREE-QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLAD-- 98 (449)
Q Consensus 23 ~~ll~~~g~i~~-~~~G~~~~lP~G~~i~~~le~~~r~~-~~~~G~~ei~tP~l~~~eL~~~SGh~d~~~~em~~~~d-- 98 (449)
T Consensus 197 Teea~k~GWvK~f~gRGQW~y~P~~t~LFRafE~ii~Ee~i~~lGf~e~lFPKLiplevm~kmryleGlp~gmYYVCpPK 276 (516)
T PRK00960 197 TEEAEKLGWVKRFPGRGQWFYTPPMAKLFRAFEEIILEECIEKLGFDECLFPKLIPLDVMYKMRYLEGLPEGMYYVCPPK 276 (516)
T ss_pred HHHHHHCCCHHCCCCCCCEEECCHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCCCHHHHHHHHCCCCCCCCCCEEECCCC
T ss_conf 79998626042188887424377588999999999999974323761000134552999977330126998727866998
Q ss_pred ---------------------------CCCCCCEECCCCCCCCCCCHHHCCCCCCCCCEEEEE-CCCCCCCCCCCCCCCC
Q ss_conf ---------------------------378620003455543101100001342013402641-4653345667675434
Q gi|254780870|r 99 ---------------------------RNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQ-IQLKFRDELRPRFGVM 150 (449)
Q Consensus 99 ---------------------------~~~~~~~LrP~~~e~~~~i~~~~~~SYr~LPlr~y~-ig~~fR~E~rp~~GL~ 150 (449)
T Consensus 277 RDPe~feef~~e~~i~~EiPi~~lKe~l~~P~yvlapAQCePFy~fl~~e~v~~d~lPik~FDrSGwtyRwE~GG~~Gle 356 (516)
T PRK00960 277 RDPEMFEEFVNEMMIKKEIPIDLLKEKLRDPGYVLAPAQCEPFYQFLDHELVDVDELPIKFFDKSGWTYRWEGGGAKGLD 356 (516)
T ss_pred CCHHHHHHHHHHHEEECCCCHHHHHHHHCCCCCEEEECCCCCHHHHHCCCCCCCCCCCEEEEECCCCEEEECCCCCCCHH
T ss_conf 98689999977733405366899998612886135102499378873677256555865788558862640478743235
Q ss_pred CCEEEEEEECCEECCCHHHHHHHHHHHHHHHHHHHH-HCCCHHHHHHHCCHHCCCCHHHHHHHHCCCCCCEEEECCCCCC
Q ss_conf 531668740422118868879999999998741111-0062012233110010131133434546867701431010034
Q gi|254780870|r 151 RSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFH-RLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMD 229 (449)
Q Consensus 151 R~ReF~q~D~~~F~~~~e~~~~e~~~~~~~~~~i~~-~lgl~~~~v~~~~~~ig~~~s~e~~~~~~~~e~~~~~~~~~~~ 229 (449)
T Consensus 357 RV~EF~RiE~VW~-gtpe-~ve~~r~~~~~y~~~~ae~LdLE~w~ev~dd-P---------fylegr~---------~-- 413 (516)
T PRK00960 357 RVNEFLRIECVWM-GTPE-FVEEVRDDTLKYAHILAEKLDLEYWTEVGDD-P---------FYLEGRK---------L-- 413 (516)
T ss_pred HHHHHHEEEEEEE-CCHH-HHHHHHHHHHHHHHHHHHHHCHHHHEEECCC-C---------HHHCCCC---------C--
T ss_conf 5501014777884-6889-9999988899999998877432442230567-5---------0322565---------4--
Q ss_pred CCCCHHHCCHHHHHCCCCCCCCCCCCCCCCHHHCHHHHHCCCCCCCEEEEEEEECCCEEECCCCCCCCCEEEEECCCCCC
Q ss_conf 77641112201210011220001363212011000233035876552432111158144223112230115896477772
Q gi|254780870|r 230 FPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKD 309 (449)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~d~l~~~~~~~~~~ie~~~~f~lG~~ys~~~~~~~~~~~g~~ 309 (449)
T Consensus 414 ---e~r~iE~p~---------------vp~ye~~-----~~LP~~~~-e~k~v~v~s~nVhG~hf~eGF~V--K~~~g-- 465 (516)
T PRK00960 414 ---EDRGIEFPD---------------VPKYEMR-----LWLPHIKE-ERKGVAVTSANIHGTHFVEGFNV--KDYKG-- 465 (516)
T ss_pred ---CCCCCCCCC---------------CCCEEEE-----EECCCCCC-CCCEEEEEEEEECCCCCCCCCCC--EECCC--
T ss_conf ---455643688---------------8854679-----96576477-67726888863147535676522--00358--
Q ss_pred CCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCHHH
Q ss_conf 32336663447430023322102321111136332
Q gi|254780870|r 310 HYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSV 344 (449)
Q Consensus 310 ~~~~~g~~giG~~R~~~alle~~~d~~g~~wP~~i 344 (449)
T Consensus 466 ~~~WtGCtG~GL~RWv~gFLAQ~Gfd-~~~WPe~i 499 (516)
T PRK00960 466 RKLWTGCTGVGLTRWVIGFLAQKGFD-PDNWPEEI 499 (516)
T ss_pred CEEECCCCCCCHHHHHHHHHHHCCCC-CCCCCHHH
T ss_conf 73113776445789999999870798-12164999