HHsearch alignment for GI: 254780870 and conserved domain: PRK02983

>PRK02983 lysS lysyl-tRNA synthetase; Provisional.
Probab=98.61  E-value=6.5e-08  Score=69.44  Aligned_cols=109  Identities=19%  Similarity=0.260  Sum_probs=64.6

Q ss_pred             HHHHHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHCCCCHHHHHHHCCHHHCCCCCCEECCCCCCCCC-CCHHHCCCCC
Q ss_conf             999999999999999866988973575124689877197311222210402137862000345554310-1100001342
Q gi|254780870|r   47 QKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMT-DIFRSHIKSY  125 (449)
Q Consensus        47 ~~i~~~le~~~r~~~~~~G~~ei~tP~l~~~eL~~~SGh~d~~~~em~~~~d~~~~~~~LrP~~~e~~~-~i~~~~~~SY  125 (449)
T Consensus       776 ~~~RS~Vi~aiR~~L~~~GFlEVETPiLq~~----~GG--A~-ARPFlThsna~d~~~YLriA-PELflKRLmVGGf---  844 (1099)
T PRK02983        776 IRARSAVLRAVRETLVAKGFLEVETPILQQI----HGG--AN-ARPFLTHINAYDLDLYLRIA-PELYLKRLCVGGV---  844 (1099)
T ss_pred             HHHHHHHHHHHHHHHHHCCCEEEECCCCCCC----CCC--CC-CCCCCCCCCCCCCCCEEECC-HHHHHHHHHHCCC---
T ss_conf             9999999999999998789889557546778----887--56-78530103367866145148-0899999986486---


Q ss_pred             CCCCEEEEECCCCCCCCCCCCCCCCCCEEEEEEECCEECCCHHHHHHH
Q ss_conf             013402641465334566767543453166874042211886887999
Q gi|254780870|r  126 RNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHS  173 (449)
Q Consensus       126 r~LPlr~y~ig~~fR~E~rp~~GL~R~ReF~q~D~~~F~~~~e~~~~e  173 (449)
T Consensus       845 ----eRVFEI~RcFRNEg-lrad--HnPEFTmLE~Y~Ay~Dyedmm~l  885 (1099)
T PRK02983        845 ----ERVFELGRAFRNEG-VDFS--HNPEFTLLEAYQAHADYLVMRDL  885 (1099)
T ss_pred             ----CCCEEECCCCCCCC-CCCC--CCCCHHHHHHHHHHCCHHHHHHH
T ss_conf             ----31134325446799-9987--49407999999984789999999