HHsearch alignment for GI: 254780870 and conserved domain: PRK02983
>PRK02983 lysS lysyl-tRNA synthetase; Provisional.
Probab=98.61 E-value=6.5e-08 Score=69.44 Aligned_cols=109 Identities=19% Similarity=0.260 Sum_probs=64.6
Q ss_pred HHHHHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHCCCCHHHHHHHCCHHHCCCCCCEECCCCCCCCC-CCHHHCCCCC
Q ss_conf 999999999999999866988973575124689877197311222210402137862000345554310-1100001342
Q gi|254780870|r 47 QKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMT-DIFRSHIKSY 125 (449)
Q Consensus 47 ~~i~~~le~~~r~~~~~~G~~ei~tP~l~~~eL~~~SGh~d~~~~em~~~~d~~~~~~~LrP~~~e~~~-~i~~~~~~SY 125 (449)
T Consensus 776 ~~~RS~Vi~aiR~~L~~~GFlEVETPiLq~~----~GG--A~-ARPFlThsna~d~~~YLriA-PELflKRLmVGGf--- 844 (1099)
T PRK02983 776 IRARSAVLRAVRETLVAKGFLEVETPILQQI----HGG--AN-ARPFLTHINAYDLDLYLRIA-PELYLKRLCVGGV--- 844 (1099)
T ss_pred HHHHHHHHHHHHHHHHHCCCEEEECCCCCCC----CCC--CC-CCCCCCCCCCCCCCCEEECC-HHHHHHHHHHCCC---
T ss_conf 9999999999999998789889557546778----887--56-78530103367866145148-0899999986486---
Q ss_pred CCCCEEEEECCCCCCCCCCCCCCCCCCEEEEEEECCEECCCHHHHHHH
Q ss_conf 013402641465334566767543453166874042211886887999
Q gi|254780870|r 126 RNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHS 173 (449)
Q Consensus 126 r~LPlr~y~ig~~fR~E~rp~~GL~R~ReF~q~D~~~F~~~~e~~~~e 173 (449)
T Consensus 845 ----eRVFEI~RcFRNEg-lrad--HnPEFTmLE~Y~Ay~Dyedmm~l 885 (1099)
T PRK02983 845 ----ERVFELGRAFRNEG-VDFS--HNPEFTLLEAYQAHADYLVMRDL 885 (1099)
T ss_pred ----CCCEEECCCCCCCC-CCCC--CCCCHHHHHHHHHHCCHHHHHHH
T ss_conf ----31134325446799-9987--49407999999984789999999