HHsearch alignment for GI: 254780870 and conserved domain: cd00738
>cd00738 HGTP_anticodon HGTP anticodon binding domain, as found at the C-terminus of histidyl, glycyl, threonyl and prolyl tRNA synthetases, which are classified as a group of class II aminoacyl-tRNA synthetases (aaRS). In aaRSs, the anticodon binding domain is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only. This domain is also found in the accessory subunit of mitochondrial polymerase gamma (Pol gamma b).
Probab=99.92 E-value=4.2e-24 Score=171.80 Aligned_cols=93 Identities=29% Similarity=0.536 Sum_probs=90.6
Q ss_pred CCCCEEEECCCCHHHHHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHCCCCEEEEECCCHHHCCEEEEEECCCCC
Q ss_conf 32110242178879999999999999998698799975897970867878748998899986240235718999989997
Q gi|254780870|r 346 PFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGI 425 (449)
Q Consensus 346 P~~v~Iipi~~~~~~~~~~A~~i~~~Lr~~Gi~v~~D~r~~~iGkK~~~Ad~~gip~~iiiG~~el~~~~Vtir~r~tg~ 425 (449)
T Consensus 1 P~qv~Iipi~~~~~e~~~~a~~l~~~L~~~gi~v~~Ddr~~~~g~k~~~a~~~giP~~iiiG~~e~e~~~v~vr~r~~~e 80 (94)
T cd00738 1 PIDVAIVPLTDPRVEAREYAQKLLNALLANGIRVLYDDRERKIGKKFREADLRGVPFAVVVGEDELENGKVTVKSRDTGE 80 (94)
T ss_pred CEEEEEEEECCCCHHHHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHCCCCEEEEECCHHHHCCEEEEEECCCCC
T ss_conf 91999998438977899999999999998899899987999975999999974998999988003437989999989997
Q ss_pred EEEEEHHHHHHHH
Q ss_conf 8786199999999
Q gi|254780870|r 426 REDMSLEEVINYA 438 (449)
Q Consensus 426 q~~v~l~eli~~i 438 (449)
T Consensus 81 q~~v~~~e~~~~l 93 (94)
T cd00738 81 SETLHVDELPEFL 93 (94)
T ss_pred EEEEEHHHHHHHH
T ss_conf 7898999988865