HHsearch alignment for GI: 254780870 and conserved domain: cd00769
>cd00769 PheRS_beta_core Phenylalanyl-tRNA synthetase (PheRS) beta chain core domain. PheRS belongs to class II aminoacyl-tRNA synthetases (aaRS) based upon its structure. While class II aaRSs generally aminoacylate the 3'-OH ribose of the appropriate tRNA, PheRS is an exception in that it attaches the amino acid at the 2'-OH group, like class I aaRSs. PheRS is an alpha-2/ beta-2 tetramer. While the alpha chain contains a catalytic core domain, the beta chain has a non-catalytic core domain.
Probab=96.61 E-value=0.0014 Score=42.01 Aligned_cols=89 Identities=15% Similarity=0.180 Sum_probs=58.2
Q ss_pred HHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHCCCCHHHHHHHCCHHH-CCCCCCEECCCCCCCCCCCHHHCCCCCCCC
Q ss_conf 9999999999998669889735751246898771973112222104021-378620003455543101100001342013
Q gi|254780870|r 50 LDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLAD-RNDKAMIYGPTHEEVMTDIFRSHIKSYRNL 128 (449)
Q Consensus 50 ~~~le~~~r~~~~~~G~~ei~tP~l~~~eL~~~SGh~d~~~~em~~~~d-~~~~~~~LrP~~~e~~~~i~~~~~~SYr~L 128 (449)
T Consensus 2 ~~~l~~~ir~~L~~~Gf~Ev~t~s~~~~~~~~~~~~--~-~~~~i~l~NPls~e~~~lR~sLlp~LL~~~~~N~~-r~~~ 77 (198)
T cd00769 2 LQKLERKLRRLLAGLGFQEVITYSLTSPEEAELFDG--G-LDEAVELSNPLSEEYSVLRTSLLPGLLDALARNLN-RKNK 77 (198)
T ss_pred HHHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHCC--C-CCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHCC-CCCC
T ss_conf 679999999999978971413067689899987248--8-78738970886566889888779999999986505-6777
Q ss_pred CEEEEECCCCCCCC
Q ss_conf 40264146533456
Q gi|254780870|r 129 PFTFYQIQLKFRDE 142 (449)
Q Consensus 129 Plr~y~ig~~fR~E 142 (449)
T Consensus 78 ~~~lFEiG~vy~~~ 91 (198)
T cd00769 78 PLRLFEIGRVFLKD 91 (198)
T ss_pred CCEEEEEEEEEECC
T ss_conf 73289976389668