HHsearch alignment for GI: 254780870 and conserved domain: cd00772
>cd00772 ProRS_core Prolyl-tRNA synthetase (ProRS) class II core catalytic domain. ProRS is a homodimer. It is responsible for the attachment of proline to the 3' OH group of ribose of the appropriate tRNA. This domain is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs in the core domain.
Probab=100.00 E-value=0 Score=456.39 Aligned_cols=238 Identities=34% Similarity=0.560 Sum_probs=223.8
Q ss_pred ECCCCCHHCCCCHHHHHHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHCCCCHHHH-HHHCCHHHCCCCC----CEECC
Q ss_conf 003881110431699999999999999986698897357512468987719731122-2210402137862----00034
Q gi|254780870|r 34 QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYG-KEMLRLADRNDKA----MIYGP 108 (449)
Q Consensus 34 ~~~~G~~~~lP~G~~i~~~le~~~r~~~~~~G~~ei~tP~l~~~eL~~~SGh~d~~~-~em~~~~d~~~~~----~~LrP 108 (449)
T Consensus 19 ~~~~G~~~~lP~G~~i~~ki~~~i~~e~~~~G~qev~~P~l~p~~lw~ksgr~~~~~~~e~~~~~~~~~~~~e~~~~L~P 98 (264)
T cd00772 19 GPGRGIINFLPLAKAILDKIENVLDKMFKEHGAQNALFPFFILASFLEKEAEHDEGFSKELAVFKDAGDEELEEDFALRP 98 (264)
T ss_pred CCCCCEEEECHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHCCCHHHCCCCCEEEEEECCCCCCCCCCCCCC
T ss_conf 89887588890599999999999999999829949812567998999976984443785237997348742123520167
Q ss_pred CCCCCCCCCHHHCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCEEEEEEECCEECCCHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 55543101100001342013402641465334566767543453166874042211886887999999999874111100
Q gi|254780870|r 109 THEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRL 188 (449)
Q Consensus 109 ~~~e~~~~i~~~~~~SYr~LPlr~y~ig~~fR~E~rp~~GL~R~ReF~q~D~~~F~~~~e~~~~e~~~~~~~~~~i~~~l 188 (449)
T Consensus 99 T~Ee~~~~~~~~~i~SyrdLPl~lyQ~~~~fR~E~r~r~GllR~REFlmkDahsf~~t~e~a~~~y~~~~~~Y~~if~~l 178 (264)
T cd00772 99 TLEENIGEIAAKFIKSWKDLPQHLNQIGNKFRDEIRPRFGFLRAREFIMKDGHSAHADAEEADEEFLNMLSAYAEIARDL 178 (264)
T ss_pred CCCHHHHHHHHHHCCCHHHCCHHHHHHHHHHHCCCCCCCCCHHHEEEEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 78689999998640766557977876557860578855433232043411035325999999999999999999999996
Q ss_pred C-CHHHHHHHCCHH--CCCCHHHHHHHHCCCCCCEEEECCCCCCCCCCHHHCCHHHHHCCCCCCCCCCCCCCCCHHHCHH
Q ss_conf 6-201223311001--0131133434546867701431010034776411122012100112200013632120110002
Q gi|254780870|r 189 G-LKSIPMRAESGP--IGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNE 265 (449)
Q Consensus 189 g-l~~~~v~~~~~~--ig~~~s~e~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~ 265 (449)
T Consensus 179 g~lp~~~~~~~~g~kf~Ga~~s~ef~~~~~~G~----------------------------------------------- 211 (264)
T cd00772 179 AAIDFIEGEADEGAKFAGASKSREFEALMEDGK----------------------------------------------- 211 (264)
T ss_pred CCCCCEEEECCCCCCCCCCEEEEEEEEECCCCC-----------------------------------------------
T ss_conf 698516764477885688501689999878887-----------------------------------------------
Q ss_pred HHHCCCCCCCEEEEEEEECCCEEECCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHC
Q ss_conf 330358765524321111581442231122301158964777723233666344743002332210
Q gi|254780870|r 266 KLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIES 331 (449)
Q Consensus 266 ~~~d~l~~~~~~~~~~ie~~~~f~lG~~ys~~~~~~~~~~~g~~~~~~~g~~giG~~R~~~alle~ 331 (449)
T Consensus 212 -------------~~~~ev~H~f~~g~~~s~~~~~~f~~~dg~~~~v~m~syGIgitRligaiIeq 264 (264)
T cd00772 212 -------------AKQAETGHIFGEGFARAFDLKAKFLDKDGKEKFFEMGCWGIGISRFIGAIIEQ 264 (264)
T ss_pred -------------CCEEEEEEECCCCCCEECCCCCEEECCCCCEEEEEECCCCCHHHHHHHEEECC
T ss_conf -------------13644688815785012256657888999982258036778177444405529