HHsearch alignment for GI: 254780870 and conserved domain: cd00779
>cd00779 ProRS_core_prok Prolyl-tRNA synthetase (ProRS) class II core catalytic domain. ProRS is a homodimer. It is responsible for the attachment of proline to the 3' OH group of ribose of the appropriate tRNA. This domain is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs in the core domain. This subfamily contains the core domain of ProRS from prokaryotes and from the mitochondria of eukaryotes.
Probab=100.00 E-value=0 Score=508.50 Aligned_cols=255 Identities=58% Similarity=1.011 Sum_probs=244.0
Q ss_pred CCCCCCHHHHHHHCCCEECCCCCHHCCCCHHHHHHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHCCCCHHHHHHHCCH
Q ss_conf 14125612213530320003881110431699999999999999986698897357512468987719731122221040
Q gi|254780870|r 17 DAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRL 96 (449)
Q Consensus 17 d~~~~~~~ll~~~g~i~~~~~G~~~~lP~G~~i~~~le~~~r~~~~~~G~~ei~tP~l~~~eL~~~SGh~d~~~~em~~~ 96 (449)
T Consensus 1 ~~~~~s~~ll~~ag~i~~~~~G~~~~lP~G~~i~~~i~~~i~~~~~~~G~~ev~~P~l~~~~l~~~sg~~~~f~~emf~v 80 (255)
T cd00779 1 DAEIISHKLLLRAGFIRQTSSGLYSWLPLGLRVLKKIENIIREEMNKIGAQEILMPILQPAELWKESGRWDAYGPELLRL 80 (255)
T ss_pred CCCHHHHHHHHHCCCCCCCCCCCEEECCHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHCCCCCCCCCEEEE
T ss_conf 94256799998758876578862788502999999999999999998599899765347388874425301368731544
Q ss_pred HHCCCCCCEECCCCCCCCCCCHHHCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCEEEEEEECCEECCCHHHHHHHHHH
Q ss_conf 21378620003455543101100001342013402641465334566767543453166874042211886887999999
Q gi|254780870|r 97 ADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNK 176 (449)
Q Consensus 97 ~d~~~~~~~LrP~~~e~~~~i~~~~~~SYr~LPlr~y~ig~~fR~E~rp~~GL~R~ReF~q~D~~~F~~~~e~~~~e~~~ 176 (449)
T Consensus 81 ~d~~~~~~~L~PT~E~~~~~~~~~~i~SyrdLPl~~~q~~~~fR~E~r~~~GllR~rEF~~~d~hsf~~~~e~a~~~~~~ 160 (255)
T cd00779 81 KDRHGKEFLLGPTHEEVITDLVANEIKSYKQLPLNLYQIQTKFRDEIRPRFGLMRGREFLMKDAYSFDIDEESLEETYEK 160 (255)
T ss_pred ECCCCCEEEECCCCHHHHHHHHHHHCCCHHHCCEEEECCCCEECCCCCCCCCCCEEEEEEEEHHHCCCCCHHHHHHHHHH
T ss_conf 53788777316887488999998650361225745413533542566788663243137700220356998999999999
Q ss_pred HHHHHHHHHHHCCCHHHHHHHCCHHCCCCHHHHHHHHCCCCCCEEEECCCCCCCCCCHHHCCHHHHHCCCCCCCCCCCCC
Q ss_conf 99987411110062012233110010131133434546867701431010034776411122012100112200013632
Q gi|254780870|r 177 MFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPY 256 (449)
Q Consensus 177 ~~~~~~~i~~~lgl~~~~v~~~~~~ig~~~s~e~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (449)
T Consensus 161 ~~~~y~~i~~~Lglp~~~v~~~~g~~g~~~s~ef~~~~~l---------------------------------------- 200 (255)
T cd00779 161 MYQAYSRIFKRLGLPFVKVEADSGAIGGSLSHEFHVLSPL---------------------------------------- 200 (255)
T ss_pred HHHHHHHHHHHCCCCEEEEECCCCCCCCCCCEEEEEEECC----------------------------------------
T ss_conf 9999999999839987998547667788745799998247----------------------------------------
Q ss_pred CCCHHHCHHHHHCCCCCCCEEEEEEEECCCEEECCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHC
Q ss_conf 120110002330358765524321111581442231122301158964777723233666344743002332210
Q gi|254780870|r 257 AATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIES 331 (449)
Q Consensus 257 ~~~~d~~~~~~~d~l~~~~~~~~~~ie~~~~f~lG~~ys~~~~~~~~~~~g~~~~~~~g~~giG~~R~~~alle~ 331 (449)
T Consensus 201 --------------------~~~~~lEvg~~~~lG~~~s~~~~i~y~d~dg~~~~~~m~s~Gi~i~R~i~AliEq 255 (255)
T cd00779 201 --------------------KITKGIEVGHIFQLGTKYSKALGATFLDENGKPKPLEMGCYGIGVSRLLAAIIEQ 255 (255)
T ss_pred --------------------CCCCEEEEEEEECCCCHHHHHCCCEEECCCCCEEEEEEECCCCHHHHHHHHHCCC
T ss_conf --------------------7775689974550562557855999999999988469706504898888884049