HHsearch alignment for GI: 254780870 and conserved domain: cd00779

>cd00779 ProRS_core_prok Prolyl-tRNA synthetase (ProRS) class II core catalytic domain. ProRS is a homodimer. It is responsible for the attachment of proline to the 3' OH group of ribose of the appropriate tRNA. This domain is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs in the core domain. This subfamily contains the core domain of ProRS from prokaryotes and from the mitochondria of eukaryotes.
Probab=100.00  E-value=0  Score=508.50  Aligned_cols=255  Identities=58%  Similarity=1.011  Sum_probs=244.0

Q ss_pred             CCCCCCHHHHHHHCCCEECCCCCHHCCCCHHHHHHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHCCCCHHHHHHHCCH
Q ss_conf             14125612213530320003881110431699999999999999986698897357512468987719731122221040
Q gi|254780870|r   17 DAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRL   96 (449)
Q Consensus        17 d~~~~~~~ll~~~g~i~~~~~G~~~~lP~G~~i~~~le~~~r~~~~~~G~~ei~tP~l~~~eL~~~SGh~d~~~~em~~~   96 (449)
T Consensus         1 ~~~~~s~~ll~~ag~i~~~~~G~~~~lP~G~~i~~~i~~~i~~~~~~~G~~ev~~P~l~~~~l~~~sg~~~~f~~emf~v   80 (255)
T cd00779           1 DAEIISHKLLLRAGFIRQTSSGLYSWLPLGLRVLKKIENIIREEMNKIGAQEILMPILQPAELWKESGRWDAYGPELLRL   80 (255)
T ss_pred             CCCHHHHHHHHHCCCCCCCCCCCEEECCHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHCCCCCCCCCEEEE
T ss_conf             94256799998758876578862788502999999999999999998599899765347388874425301368731544


Q ss_pred             HHCCCCCCEECCCCCCCCCCCHHHCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCEEEEEEECCEECCCHHHHHHHHHH
Q ss_conf             21378620003455543101100001342013402641465334566767543453166874042211886887999999
Q gi|254780870|r   97 ADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNK  176 (449)
Q Consensus        97 ~d~~~~~~~LrP~~~e~~~~i~~~~~~SYr~LPlr~y~ig~~fR~E~rp~~GL~R~ReF~q~D~~~F~~~~e~~~~e~~~  176 (449)
T Consensus        81 ~d~~~~~~~L~PT~E~~~~~~~~~~i~SyrdLPl~~~q~~~~fR~E~r~~~GllR~rEF~~~d~hsf~~~~e~a~~~~~~  160 (255)
T cd00779          81 KDRHGKEFLLGPTHEEVITDLVANEIKSYKQLPLNLYQIQTKFRDEIRPRFGLMRGREFLMKDAYSFDIDEESLEETYEK  160 (255)
T ss_pred             ECCCCCEEEECCCCHHHHHHHHHHHCCCHHHCCEEEECCCCEECCCCCCCCCCCEEEEEEEEHHHCCCCCHHHHHHHHHH
T ss_conf             53788777316887488999998650361225745413533542566788663243137700220356998999999999


Q ss_pred             HHHHHHHHHHHCCCHHHHHHHCCHHCCCCHHHHHHHHCCCCCCEEEECCCCCCCCCCHHHCCHHHHHCCCCCCCCCCCCC
Q ss_conf             99987411110062012233110010131133434546867701431010034776411122012100112200013632
Q gi|254780870|r  177 MFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPY  256 (449)
Q Consensus       177 ~~~~~~~i~~~lgl~~~~v~~~~~~ig~~~s~e~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  256 (449)
T Consensus       161 ~~~~y~~i~~~Lglp~~~v~~~~g~~g~~~s~ef~~~~~l----------------------------------------  200 (255)
T cd00779         161 MYQAYSRIFKRLGLPFVKVEADSGAIGGSLSHEFHVLSPL----------------------------------------  200 (255)
T ss_pred             HHHHHHHHHHHCCCCEEEEECCCCCCCCCCCEEEEEEECC----------------------------------------
T ss_conf             9999999999839987998547667788745799998247----------------------------------------


Q ss_pred             CCCHHHCHHHHHCCCCCCCEEEEEEEECCCEEECCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHC
Q ss_conf             120110002330358765524321111581442231122301158964777723233666344743002332210
Q gi|254780870|r  257 AATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIES  331 (449)
Q Consensus       257 ~~~~d~~~~~~~d~l~~~~~~~~~~ie~~~~f~lG~~ys~~~~~~~~~~~g~~~~~~~g~~giG~~R~~~alle~  331 (449)
T Consensus       201 --------------------~~~~~lEvg~~~~lG~~~s~~~~i~y~d~dg~~~~~~m~s~Gi~i~R~i~AliEq  255 (255)
T cd00779         201 --------------------KITKGIEVGHIFQLGTKYSKALGATFLDENGKPKPLEMGCYGIGVSRLLAAIIEQ  255 (255)
T ss_pred             --------------------CCCCEEEEEEEECCCCHHHHHCCCEEECCCCCEEEEEEECCCCHHHHHHHHHCCC
T ss_conf             --------------------7775689974550562557855999999999988469706504898888884049