HHsearch alignment for GI: 254780870 and conserved domain: cd00858
>cd00858 GlyRS_anticodon GlyRS Glycyl-anticodon binding domain. GlyRS belongs to class II aminoacyl-tRNA synthetases (aaRS). This alignment contains the anticodon binding domain, which is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only.
Probab=99.95 E-value=2.5e-27 Score=192.19 Aligned_cols=104 Identities=26% Similarity=0.453 Sum_probs=98.4
Q ss_pred CCCCHHHCCCCCEEEECCCCHHHHHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHCCCCEEEEECCCHHHCCEEE
Q ss_conf 11363320321102421788799999999999999986987999758979708678787489988999862402357189
Q gi|254780870|r 338 IIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVE 417 (449)
Q Consensus 338 ~~wP~~iaP~~v~Iipi~~~~~~~~~~A~~i~~~Lr~~Gi~v~~D~r~~~iGkK~~~Ad~~gip~~iiiG~~el~~~~Vt 417 (449)
T Consensus 18 l~lP~~lAP~qv~IiPi~~~d~-~~~~a~~i~~~L~~~gi~v~~Dd~~-s~G~K~~~~d~~giP~~ivIg~~~le~~~Vt 95 (121)
T cd00858 18 LRLPPALAPIKVAVLPLVKRDE-LVEIAKEISEELRELGFSVKYDDSG-SIGRRYARQDEIGTPFCVTVDFDTLEDGTVT 95 (121)
T ss_pred EECCCCCCCCEEEEEECCCCHH-HHHHHHHHHHHHHHCCCEEEEECCC-CHHHHHHHHHHHCCCEEEEEECCEECCCEEE
T ss_conf 9878863883799997416077-7999999999998779779970388-8314446788748983999927610378799
Q ss_pred EEECCCCCEEEEEHHHHHHHHHHHHH
Q ss_conf 99989997878619999999999987
Q gi|254780870|r 418 IKHRLTGIREDMSLEEVINYASHRFS 443 (449)
Q Consensus 418 ir~r~tg~q~~v~l~eli~~i~~~l~ 443 (449)
T Consensus 96 iR~Rdt~~q~~v~i~el~~~i~~llk 121 (121)
T cd00858 96 IRERDSMRQVRVKIEELPSYLRELIR 121 (121)
T ss_pred EEECCCCCEEEEEHHHHHHHHHHHHC
T ss_conf 99989995789999999999999859