HHsearch alignment for GI: 254780870 and conserved domain: cd00859
>cd00859 HisRS_anticodon HisRS Histidyl-anticodon binding domain. HisRS belongs to class II aminoacyl-tRNA synthetases (aaRS). This alignment contains the anticodon binding domain, which is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only.
Probab=99.81 E-value=3e-19 Score=141.11 Aligned_cols=90 Identities=21% Similarity=0.295 Sum_probs=85.3
Q ss_pred CCCEEEECCCCHHHHHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHCCCCEEEEECCCHHHCCEEEEEECCCCCE
Q ss_conf 21102421788799999999999999986987999758979708678787489988999862402357189999899978
Q gi|254780870|r 347 FKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIR 426 (449)
Q Consensus 347 ~~v~Iipi~~~~~~~~~~A~~i~~~Lr~~Gi~v~~D~r~~~iGkK~~~Ad~~gip~~iiiG~~el~~~~Vtir~r~tg~q 426 (449)
T Consensus 2 vdv~ii~~~~---~~~~~a~~i~~~LR~~gi~v~~~~~~~~l~kqlk~A~k~~~~~~iiiG~~E~~~~~v~iK~~~t~~q 78 (91)
T cd00859 2 VDVYVVPLGE---GALSEALELAEQLRDAGIKAEIDYGGRKLKKQFKYADRSGARFAVILGEDELAAGVVTVKDLETGEQ 78 (91)
T ss_pred CEEEEEEECH---HHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHCCCEEEEECCHHHHCCEEEEEECCCCCE
T ss_conf 4899998186---9999999999999988993999736887889999999709988999865142169799999999958
Q ss_pred EEEEHHHHHHHHH
Q ss_conf 7861999999999
Q gi|254780870|r 427 EDMSLEEVINYAS 439 (449)
Q Consensus 427 ~~v~l~eli~~i~ 439 (449)
T Consensus 79 ~~i~~~eli~~lK 91 (91)
T cd00859 79 ETVALDELVEELK 91 (91)
T ss_pred EEEEHHHHHHHHC
T ss_conf 9988999999759