HHsearch alignment for GI: 254780870 and conserved domain: cd00859

>cd00859 HisRS_anticodon HisRS Histidyl-anticodon binding domain. HisRS belongs to class II aminoacyl-tRNA synthetases (aaRS). This alignment contains the anticodon binding domain, which is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only.
Probab=99.81  E-value=3e-19  Score=141.11  Aligned_cols=90  Identities=21%  Similarity=0.295  Sum_probs=85.3

Q ss_pred             CCCEEEECCCCHHHHHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHCCCCEEEEECCCHHHCCEEEEEECCCCCE
Q ss_conf             21102421788799999999999999986987999758979708678787489988999862402357189999899978
Q gi|254780870|r  347 FKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIR  426 (449)
Q Consensus       347 ~~v~Iipi~~~~~~~~~~A~~i~~~Lr~~Gi~v~~D~r~~~iGkK~~~Ad~~gip~~iiiG~~el~~~~Vtir~r~tg~q  426 (449)
T Consensus         2 vdv~ii~~~~---~~~~~a~~i~~~LR~~gi~v~~~~~~~~l~kqlk~A~k~~~~~~iiiG~~E~~~~~v~iK~~~t~~q   78 (91)
T cd00859           2 VDVYVVPLGE---GALSEALELAEQLRDAGIKAEIDYGGRKLKKQFKYADRSGARFAVILGEDELAAGVVTVKDLETGEQ   78 (91)
T ss_pred             CEEEEEEECH---HHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHCCCEEEEECCHHHHCCEEEEEECCCCCE
T ss_conf             4899998186---9999999999999988993999736887889999999709988999865142169799999999958


Q ss_pred             EEEEHHHHHHHHH
Q ss_conf             7861999999999
Q gi|254780870|r  427 EDMSLEEVINYAS  439 (449)
Q Consensus       427 ~~v~l~eli~~i~  439 (449)
T Consensus        79 ~~i~~~eli~~lK   91 (91)
T cd00859          79 ETVALDELVEELK   91 (91)
T ss_pred             EEEEHHHHHHHHC
T ss_conf             9988999999759