HHsearch alignment for GI: 254780870 and conserved domain: cd00861
>cd00861 ProRS_anticodon_short ProRS Prolyl-anticodon binding domain, short version found predominantly in bacteria. ProRS belongs to class II aminoacyl-tRNA synthetases (aaRS). This alignment contains the anticodon binding domain, which is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only.
Probab=99.90 E-value=2.6e-23 Score=166.79 Aligned_cols=94 Identities=39% Similarity=0.726 Sum_probs=91.2
Q ss_pred CCCCEEEECCCCHHHHHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHCCCCEEEEECCCHHHCCEEEEEECCCCC
Q ss_conf 32110242178879999999999999998698799975897970867878748998899986240235718999989997
Q gi|254780870|r 346 PFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGI 425 (449)
Q Consensus 346 P~~v~Iipi~~~~~~~~~~A~~i~~~Lr~~Gi~v~~D~r~~~iGkK~~~Ad~~gip~~iiiG~~el~~~~Vtir~r~tg~ 425 (449)
T Consensus 1 P~qv~Iipi~~~~~~~~~~a~~l~~~L~~~gi~v~~Ddr~~~~G~K~~~ael~GiP~~iiiG~k~~~~~~v~vr~R~~~~ 80 (94)
T cd00861 1 PFDVVIIPMNMKDEVQQELAEKLYAELQAAGVDVLLDDRNERPGVKFADADLIGIPYRIVVGKKSAAEGIVEIKVRKTGE 80 (94)
T ss_pred CEEEEEEECCCCCHHHHHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHHCCCCEEEEECCCCHHCCEEEEEECCCCC
T ss_conf 94999997489988999999999999988798999987997277999999974998799990662117999999978995
Q ss_pred EEEEEHHHHHHHHH
Q ss_conf 87861999999999
Q gi|254780870|r 426 REDMSLEEVINYAS 439 (449)
Q Consensus 426 q~~v~l~eli~~i~ 439 (449)
T Consensus 81 ~~~v~~~~~i~~ik 94 (94)
T cd00861 81 KEEISIDELLEFLQ 94 (94)
T ss_pred EEEECHHHHHHHHC
T ss_conf 68971999999759