HHsearch alignment for GI: 254780870 and conserved domain: pfam03129
>pfam03129 HGTP_anticodon Anticodon binding domain. This domain is found in histidyl, glycyl, threonyl and prolyl tRNA synthetases it is probably the anticodon binding domain.
Probab=99.85 E-value=1.1e-20 Score=150.13 Aligned_cols=92 Identities=32% Similarity=0.555 Sum_probs=87.9
Q ss_pred CCEEEECCCCHHHHHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHCCCCEEEEECCCHHHCCEEEEEECCCCCEE
Q ss_conf 11024217887999999999999999869879997589797086787874899889998624023571899998999787
Q gi|254780870|r 348 KISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRE 427 (449)
Q Consensus 348 ~v~Iipi~~~~~~~~~~A~~i~~~Lr~~Gi~v~~D~r~~~iGkK~~~Ad~~gip~~iiiG~~el~~~~Vtir~r~tg~q~ 427 (449)
T Consensus 1 qV~Vipi~~~~~-~~~~a~~i~~~Lr~~gi~v~~d~~~~~~~~k~~~a~~~g~p~~iiiG~~E~~~~~v~ik~r~~~~~~ 79 (93)
T pfam03129 1 QVVVIPLGEKDE-LEDYAQKLAEELREAGIRVELDDRNESLGKKFRDADLIGIPFRLVVGEKELENGTVTVRDRDTGEKE 79 (93)
T ss_pred CEEEEEECCCHH-HHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHCCCEEEEECHHHHHCCEEEEEECCCCCEE
T ss_conf 999998228676-8999999999998789979998899997899998987099907889778885898999999999788
Q ss_pred EEEHHHHHHHHHH
Q ss_conf 8619999999999
Q gi|254780870|r 428 DMSLEEVINYASH 440 (449)
Q Consensus 428 ~v~l~eli~~i~~ 440 (449)
T Consensus 80 ~v~~~~~~~~i~~ 92 (93)
T pfam03129 80 TVSLEELVEKLKE 92 (93)
T ss_pred EEEHHHHHHHHHH
T ss_conf 9879999999974