PSIBLAST alignment of GI: 254780870 and protein with PDB id: 1nj8

>gi|28948887|pdb|1NJ8|A Chain A, Crystal Structure Of Prolyl-Trna Synthetase From Methanocaldococcus Janaschii Length = 459
>gi|28948888|pdb|1NJ8|B Chain B, Crystal Structure Of Prolyl-Trna Synthetase From Methanocaldococcus Janaschii Length = 459
 Score =  159 bits (403), Expect = 6e-37,   Method: Composition-based stats.
 Identities = 84/416 (20%), Positives = 149/416 (35%), Gaps = 72/416 (17%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLW-VESGRYDSYGKEMLRL 96
           G   +LP G K       IIR   + +G  E   P L   DL   E+     +  E+  +
Sbjct: 29  GCGVYLPYGFKIRRYTFEIIRNLLDESGHDEALFPMLIPEDLLAKEAEHIKGFEDEVYWV 88

Query: 97  AD----RNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRS 152
                 + D  +   PT E  +  + +  +K + +LP   YQI   FR E +    ++R 
Sbjct: 89  THGGKTQLDVKLALRPTSETPIYYMMKLWVKVHTDLPIKIYQIVNTFRYETKHTRPLIRL 148

Query: 153 REFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIV 212
           RE                                               +    +H    
Sbjct: 149 REI----------------------------------------------MTFKEAHTAHS 162

Query: 213 LADTGETQVFCSKDFMDFPIPSENTDFDDIISLN--SIVEQWTAPYAATSDVHNEKLFDS 270
             +  E QV          I      FD +      S   +W     A   +  + +F  
Sbjct: 163 TKEEAENQV-------KEAISIYKKFFDTLGIPYLISKRPEWDKFPGAEYTMAFDTIF-- 213

Query: 271 LPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIE 330
            P+      R +++  +   G  +S      F+   G   Y     YGI + RV+A++I 
Sbjct: 214 -PDG-----RTMQIATVHNLGQNFSKTFEIIFETPTGDKDYAYQTCYGI-SDRVIASIIA 266

Query: 331 SSHDGKGIIWPDSVAPFKISLINI--KAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQI 388
              D KG+I P  VAP ++ ++ +  K  + +  +  ++IY +L      V  DD   + 
Sbjct: 267 IHGDEKGLILPPIVAPIQVVIVPLIFKGKEDIVMEKAKEIYEKLKGK-FRVHIDDRDIRP 325

Query: 389 GSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
           G +F   ++ G PL++ VG K + + K+ +  R T  +  +   +++       +N
Sbjct: 326 GRKFNDWEIKGVPLRIEVGPKDIENKKITLFRRDTMEKFQVDETQLMEVVEKTLNN 381