PSIBLAST alignment of GI: 254780870 and protein with PDB id: 1nj8
>gi|28948887|pdb|1NJ8|A Chain A, Crystal Structure Of Prolyl-Trna Synthetase From Methanocaldococcus Janaschii Length = 459
>gi|28948888|pdb|1NJ8|B Chain B, Crystal Structure Of Prolyl-Trna Synthetase From Methanocaldococcus Janaschii Length = 459
Score = 159 bits (403), Expect = 6e-37, Method: Composition-based stats.
Identities = 84/416 (20%), Positives = 149/416 (35%), Gaps = 72/416 (17%)
Query: 38 GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLW-VESGRYDSYGKEMLRL 96
G +LP G K IIR + +G E P L DL E+ + E+ +
Sbjct: 29 GCGVYLPYGFKIRRYTFEIIRNLLDESGHDEALFPMLIPEDLLAKEAEHIKGFEDEVYWV 88
Query: 97 AD----RNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRS 152
+ D + PT E + + + +K + +LP YQI FR E + ++R
Sbjct: 89 THGGKTQLDVKLALRPTSETPIYYMMKLWVKVHTDLPIKIYQIVNTFRYETKHTRPLIRL 148
Query: 153 REFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIV 212
RE + +H
Sbjct: 149 REI----------------------------------------------MTFKEAHTAHS 162
Query: 213 LADTGETQVFCSKDFMDFPIPSENTDFDDIISLN--SIVEQWTAPYAATSDVHNEKLFDS 270
+ E QV I FD + S +W A + + +F
Sbjct: 163 TKEEAENQV-------KEAISIYKKFFDTLGIPYLISKRPEWDKFPGAEYTMAFDTIF-- 213
Query: 271 LPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIE 330
P+ R +++ + G +S F+ G Y YGI + RV+A++I
Sbjct: 214 -PDG-----RTMQIATVHNLGQNFSKTFEIIFETPTGDKDYAYQTCYGI-SDRVIASIIA 266
Query: 331 SSHDGKGIIWPDSVAPFKISLINI--KAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQI 388
D KG+I P VAP ++ ++ + K + + + ++IY +L V DD +
Sbjct: 267 IHGDEKGLILPPIVAPIQVVIVPLIFKGKEDIVMEKAKEIYEKLKGK-FRVHIDDRDIRP 325
Query: 389 GSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
G +F ++ G PL++ VG K + + K+ + R T + + +++ +N
Sbjct: 326 GRKFNDWEIKGVPLRIEVGPKDIENKKITLFRRDTMEKFQVDETQLMEVVEKTLNN 381