RPS-BLAST 2.2.22 [Sep-27-2009]
Database: CddB
21,608 sequences; 5,994,473 total letters
Searching..................................................done
Query= gi|254780870|ref|YP_003065283.1| prolyl-tRNA synthetase
[Candidatus Liberibacter asiaticus str. psy62]
(449 letters)
>gnl|CDD|183440 PRK12325, PRK12325, prolyl-tRNA synthetase; Provisional.
Length = 439
Score = 817 bits (2113), Expect = 0.0
Identities = 280/440 (63%), Positives = 354/440 (80%), Gaps = 1/440 (0%)
Query: 1 MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
MR S+YFLP L+ENP++AEI SH+LMLR GMI Q + GIYSWLPLG K L + I+REE
Sbjct: 1 MRLSRYFLPTLKENPKEAEIVSHRLMLRAGMIRQQAAGIYSWLPLGLKVLKKIENIVREE 60
Query: 61 QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
QNR GAIE+ +PT+Q ADLW ESGRYD+YGKEMLR+ DR+D+ M+YGPT+EE++TDIFRS
Sbjct: 61 QNRAGAIEILMPTIQPADLWRESGRYDAYGKEMLRIKDRHDREMLYGPTNEEMITDIFRS 120
Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
++KSY++LP Y IQ KFRDE+RPRFGVMR REFLMKDAYSFDL EG++HSYN+MFV+
Sbjct: 121 YVKSYKDLPLNLYHIQWKFRDEIRPRFGVMRGREFLMKDAYSFDLDEEGARHSYNRMFVA 180
Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
YLR F RLGLK+IPMRA++GPIGGDLSHEFI+LA+TGE+ VF KDF+D +P E+ DF
Sbjct: 181 YLRTFARLGLKAIPMRADTGPIGGDLSHEFIILAETGESTVFYDKDFLDLLVPGEDIDF- 239
Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
D+ L IV++WT+ YAAT ++H+E F ++PE +R+SARGIEVGHIFYFGTKYS PM+A
Sbjct: 240 DVADLQPIVDEWTSLYAATEEMHDEAAFAAVPEERRLSARGIEVGHIFYFGTKYSEPMNA 299
Query: 301 TFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
+G DGK+ V MGSYGIG R+VAA+IE+SHD KGIIWP+SVAPFK+ +IN+K D+
Sbjct: 300 KVQGPDGKEVPVHMGSYGIGVSRLVAAIIEASHDDKGIIWPESVAPFKVGIINLKQGDEA 359
Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
C ACEK+YA LS G DV +DD E+ G++FA DL+G P Q+IVG K +++ KVE+K
Sbjct: 360 CDAACEKLYAALSAAGIDVLYDDTDERPGAKFATMDLIGLPWQIIVGPKGLAEGKVELKD 419
Query: 421 RLTGIREDMSLEEVINYASH 440
R TG RE++S+E IN +
Sbjct: 420 RKTGEREELSVEAAINRLTA 439
>gnl|CDD|181689 PRK09194, PRK09194, prolyl-tRNA synthetase; Provisional.
Length = 565
Score = 384 bits (988), Expect = e-107
Identities = 124/224 (55%), Positives = 162/224 (72%), Gaps = 1/224 (0%)
Query: 1 MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
MR S+ FLP L+E P DAE+ SH+L+LR G I + + GIY++LPLG + L + I+REE
Sbjct: 1 MRTSQLFLPTLKETPADAEVISHQLLLRAGYIRKLASGIYTYLPLGLRVLRKIENIVREE 60
Query: 61 QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
N+ GA E+ +P LQ A+LW ESGR++ YG E+LRL DR+ + + GPTHEEV+TD+ R+
Sbjct: 61 MNKIGAQEVLMPALQPAELWQESGRWEEYGPELLRLKDRHGRDFVLGPTHEEVITDLVRN 120
Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
IKSY+ LP YQIQ KFRDE+RPRFG+MR REF+MKDAYSF E +Y+ M+ +
Sbjct: 121 EIKSYKQLPLNLYQIQTKFRDEIRPRFGLMRGREFIMKDAYSFHADEESLDETYDAMYQA 180
Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGE-TQVFC 223
Y RIF RLGL + A+SG IGG SHEF+VLAD+GE T V+
Sbjct: 181 YSRIFDRLGLDFRAVEADSGAIGGSASHEFMVLADSGEDTIVYS 224
Score = 214 bits (547), Expect = 5e-56
Identities = 72/159 (45%), Positives = 106/159 (66%)
Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
ARGIEVGHIF GTKYS M+AT +GK + MG YGIG R+VAA IE +HD KGI
Sbjct: 401 ARGIEVGHIFQLGTKYSEAMNATVLDENGKAQPLIMGCYGIGVSRLVAAAIEQNHDEKGI 460
Query: 339 IWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLL 398
IWP ++APF + ++ + D+ ++ EK+YA L G +V DD E+ G +FA ADL+
Sbjct: 461 IWPKAIAPFDVHIVPVNMKDEEVKELAEKLYAELQAAGIEVLLDDRKERPGVKFADADLI 520
Query: 399 GFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINY 437
G P +++VG + +++ VE K R TG +E++ ++E++ +
Sbjct: 521 GIPHRIVVGDRGLAEGIVEYKDRRTGEKEEVPVDELVEF 559
>gnl|CDD|161864 TIGR00409, proS_fam_II, prolyl-tRNA synthetase, family II.
Prolyl-tRNA synthetase is a class II tRNA synthetase and
is recognized by pfam model tRNA-synt_2b, which
recognizes tRNA synthetases for Gly, His, Ser, and Pro.
The prolyl-tRNA synthetases are divided into two widely
divergent groups. This group includes enzymes from
Escherichia coli, Bacillus subtilis, Aquifex aeolicus,
the spirochete Treponema pallidum, Synechocystis
PCC6803, and one of the two prolyL-tRNA synthetases of
Saccharomyces cerevisiae. The other group includes the
Pro-specific domain of a human multifunctional tRNA
ligase and the prolyl-tRNA synthetases from the Archaea,
the Mycoplasmas, and the spirochete Borrelia
burgdorferi.
Length = 568
Score = 309 bits (792), Expect = 1e-84
Identities = 126/224 (56%), Positives = 162/224 (72%), Gaps = 1/224 (0%)
Query: 1 MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
MR S+Y P L+E P DAE+ SH+L+LR G I + G+Y+WLPLG + L V I+REE
Sbjct: 1 MRTSQYLFPTLKETPADAEVKSHQLLLRAGFIRRLGSGLYNWLPLGLRVLKKVENIVREE 60
Query: 61 QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
N+ GAIE+ +P LQ A+LW ESGR+D+YG E+LRL DR + + GPTHEEV+TD+ R+
Sbjct: 61 MNKDGAIEVLLPALQPAELWQESGRWDTYGPELLRLKDRKGREFVLGPTHEEVITDLARN 120
Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
IKSY+ LP YQIQ KFRDE+RPRFG+MR REF+MKDAYSF E +Y KM+ +
Sbjct: 121 EIKSYKQLPLNLYQIQTKFRDEIRPRFGLMRGREFIMKDAYSFHSDEESLDATYQKMYQA 180
Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGE-TQVFC 223
Y IF RLGL P++A+SG IGG SHEF+VLA++GE T V+
Sbjct: 181 YSNIFSRLGLDFRPVQADSGAIGGSASHEFMVLAESGEDTIVYS 224
Score = 158 bits (402), Expect = 2e-39
Identities = 65/159 (40%), Positives = 104/159 (65%)
Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
ARGIEVGHIF GTKYS + ATF +GK+ ++ MG YGIG R+V+A+ E HD +GI
Sbjct: 406 ARGIEVGHIFQLGTKYSEALKATFLDENGKNQFMTMGCYGIGVSRLVSAIAEQHHDERGI 465
Query: 339 IWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLL 398
IWP ++AP+ + ++ + D+ + E++Y+ L G DV DD E+ G +FA ++L+
Sbjct: 466 IWPKAIAPYDVVIVVMNMKDEEQQQLAEELYSELLAQGVDVLLDDRNERAGVKFADSELI 525
Query: 399 GFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINY 437
G PL+V+VG K + + ++E+K R G ++ + +E++
Sbjct: 526 GIPLRVVVGKKNLDNGEIEVKKRRNGEKQLIKKDELVEC 564
>gnl|CDD|161870 TIGR00418, thrS, threonyl-tRNA synthetase. This model represents
the threonyl-tRNA synthetase found in most organisms.
This protein is a class II tRNA synthetase, and is
recognized by the pfam model tRNA-synt_2b. Note that B.
subtilis has closely related isozymes thrS and thrZ. The
N-terminal regions are quite dissimilar between archaeal
and eubacterial forms, while some eukaryotic forms are
missing sequence there altogether..
Length = 563
Score = 97.4 bits (243), Expect = 7e-21
Identities = 93/431 (21%), Positives = 165/431 (38%), Gaps = 65/431 (15%)
Query: 24 KLMLRTGMIHQHSK---GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLW 80
KL + + G+ WLP G + + +R++Q + G +E+ P + +LW
Sbjct: 174 KLGKELELFSFEPEIGPGLPFWLPKGATIRNLLEDFVRQKQIKYGYMEVETPIMYDLELW 233
Query: 81 VESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMT-----DIFRSHIKSYRNLPFTFYQI 135
SG +D+Y + M + +++ + P M IF+S ++SYR+LP ++
Sbjct: 234 EISGHWDNYKERMFPFTELDNREFMLKP-----MNCPGHFLIFKSSLRSYRDLPLRIAEL 288
Query: 136 QLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIP 194
R E G+MR R F DA+ F T + K + F +++ G
Sbjct: 289 GYSHRYEQSGELHGLMRVRGFTQDDAHIF-CTEDQIKEEFKNQFRLIQKVYSDFGFSFDK 347
Query: 195 M----RAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVE 250
R IG D E + + + +P E I
Sbjct: 348 YELSTRDPEDFIGEDELWEK--------AEAALEEALKELGVPYE------------IDP 387
Query: 251 QWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHI---FYFGTKYSLPMSATFKGADG 307
A Y D D+L R + + F ++ L T+ D
Sbjct: 388 GRGAFYGPKIDFA---FKDAL-------GREWQCATVQLDFELPERFDL----TYVDEDN 433
Query: 308 KDHYVQMGSYGI-GAM-RVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDAC 365
++ M I G++ R +A ++E +P +AP ++ +I + ++ D
Sbjct: 434 EEKRPVMIHRAILGSIERFIAILLEKY----AGNFPLWLAPVQVVVIPV---NERHLDYA 486
Query: 366 EKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGI 425
+K+ +L K G V DD E++G + A P ++VG K + V ++ R
Sbjct: 487 KKVAQKLKKAGIRVDVDDRNERLGKKIREAQKQKIPYMLVVGDKEMESLAVNVRTRKGQK 546
Query: 426 REDMSLEEVIN 436
E MSL+E +
Sbjct: 547 LEKMSLDEFLE 557
>gnl|CDD|161863 TIGR00408, proS_fam_I, prolyl-tRNA synthetase, family I.
Prolyl-tRNA synthetase is a class II tRNA synthetase and
is recognized by pfam model tRNA-synt_2b, which
recognizes tRNA synthetases for Gly, His, Ser, and Pro.
The prolyl-tRNA synthetases are divided into two widely
divergent families. This family includes the archaeal
enzyme, the Pro-specific domain of a human
multifunctional tRNA ligase, and the enzyme from the
spirochete Borrelia burgdorferi. The other family
includes enzymes from Escherichia coli, Bacillus
subtilis, Synechocystis PCC6803, and one of the two
prolyL-tRNA synthetases of Saccharomyces cerevisiae.
Length = 472
Score = 81.3 bits (201), Expect = 5e-16
Identities = 44/159 (27%), Positives = 77/159 (48%), Gaps = 4/159 (2%)
Query: 280 RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGII 339
R +++ G ++ F+ G Y SYGI + RV+ A+I D KG++
Sbjct: 217 RTLQIATSHNLGQNFAKTFEIKFETPTGDKEYAYQTSYGI-STRVIGALIAIHSDEKGLV 275
Query: 340 WPDSVAPFKISLINI---KAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVAD 396
P VAP ++ +I I K ++ +A ++ +RL K G V DD + G +F +
Sbjct: 276 LPPRVAPIQVVIIPIIFKKKENEKVMEAAREVRSRLKKAGFRVHIDDRDNRPGRKFYQWE 335
Query: 397 LLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
+ G PL++ VG + + I R TG + +SL+++
Sbjct: 336 IKGIPLRIEVGPNDIEKNIAVISRRDTGEKYQVSLDQLE 374
Score = 65.1 bits (159), Expect = 4e-11
Identities = 52/212 (24%), Positives = 83/212 (39%), Gaps = 48/212 (22%)
Query: 4 SKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
S+++ IL++ AEI + + KG Y WLP G K N+ I+R +
Sbjct: 9 SEWYHQILEK----AEIIDYYPV----------KGCYVWLPYGFKIWKNIQKILRNILDE 54
Query: 64 TGAIEMSVPTLQSADL----------------WVESGRYDSYGKEMLRLADRNDKAMIYG 107
G E+ P L W+ G G L D+ +
Sbjct: 55 IGHEEVYFPMLIPESELAKEKDHIKGFEPEVYWITHG-----GLSKL------DEPLALR 103
Query: 108 PTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTP 167
PT E M +F+ +KSY +LP Q FR E + +R+REF ++A++ T
Sbjct: 104 PTSETAMYPMFKKWVKSYTDLPLKINQWVNVFRYETKHTRPFLRTREFTWQEAHTAHATA 163
Query: 168 EGSKHS-------YNKMFVSYLRIFHRLGLKS 192
E ++ Y + + L I + +G K
Sbjct: 164 EEAEEQVLRALDIYKEFIENSLAIPYFVGRKP 195
>gnl|CDD|181528 PRK08661, PRK08661, prolyl-tRNA synthetase; Provisional.
Length = 477
Score = 79.8 bits (198), Expect = 1e-15
Identities = 40/153 (26%), Positives = 79/153 (51%), Gaps = 7/153 (4%)
Query: 289 YFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSH-DGKGIIWPDSVAPF 347
Y G ++ F+ DGK YV S+G+ + R++ A+I +H D KG++ P +AP
Sbjct: 231 YLGQNFAKAFDIKFQDKDGKLEYVHQTSWGV-STRLIGALI-MTHGDDKGLVLPPKIAPI 288
Query: 348 KISLINIKAHDQVCR---DACEKIYARLSKVGCDVFWDDMGE-QIGSQFAVADLLGFPLQ 403
++ ++ I ++ + +++ L K G V DD + G +F +L G PL+
Sbjct: 289 QVVIVPIFKKEEKKEEVLEYAKELAEELKKAGIRVKLDDRSDKTPGWKFNEWELKGVPLR 348
Query: 404 VIVGSKFVSDSKVEIKHRLTGIREDMSLEEVIN 436
+ +G + + ++ V + R T +E + L+E++
Sbjct: 349 IEIGPRDLENNTVVLVRRDTLEKETVPLDELVE 381
Score = 57.1 bits (139), Expect = 1e-08
Identities = 39/143 (27%), Positives = 60/143 (41%), Gaps = 34/143 (23%)
Query: 37 KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTL--QS-----AD---------LW 80
KG P G +N+ I+ + TG + P L +S + W
Sbjct: 34 KGCMVIKPYGYAIWENIQKILDKLFKETGHENVYFPLLIPESLLEKEKEHVEGFAPEVAW 93
Query: 81 VESGRYDSYGKEML--RLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLK 138
V G G E L +LA R PT E ++ +++ I+SYR+LP + Q
Sbjct: 94 VTHG-----GGEKLEEKLALR--------PTSETIIYPMYKKWIQSYRDLPLLYNQWVNV 140
Query: 139 FRDELRPR-FGVMRSREFLMKDA 160
R E + R F +R+REFL ++
Sbjct: 141 VRWETKTRPF--LRTREFLWQEG 161
>gnl|CDD|179011 PRK00413, thrS, threonyl-tRNA synthetase; Reviewed.
Length = 638
Score = 52.0 bits (126), Expect = 3e-07
Identities = 39/148 (26%), Positives = 60/148 (40%), Gaps = 20/148 (13%)
Query: 31 MIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYG 90
+ + G+ W P G + IR + + G E+ P + +LW SG +D Y
Sbjct: 254 HFQEEAPGLPFWHPKGWTIRRELERYIRRKLRKAGYQEVKTPQILDRELWETSGHWDHYR 313
Query: 91 KEMLRLADRNDKAMIYG------PTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELR 144
+ M + + + Y P H V I++ ++SYR+LP + R E
Sbjct: 314 ENMFPTTESDGE--EYALKPMNCPGH--VQ--IYKQGLRSYRDLPLRLAEFGTVHRYEPS 367
Query: 145 PRFGV----MRSREFLMKDAYSFDLTPE 168
G MR R F DA+ F TPE
Sbjct: 368 ---GALHGLMRVRGFTQDDAHIF-CTPE 391
Score = 35.1 bits (82), Expect = 0.037
Identities = 40/151 (26%), Positives = 63/151 (41%), Gaps = 19/151 (12%)
Query: 294 YSLP--MSATFKGADGKDHYVQM------GSYGIGAMRVVAAVIESSHDGKGIIWPDSVA 345
++LP T+ G DG+ H M GS R + +IE + G W +A
Sbjct: 487 FNLPERFDLTYVGEDGEKHRPVMIHRAILGSM----ERFIGILIEH-YAGAFPTW---LA 538
Query: 346 PFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVI 405
P ++ ++ I D +++ +L G V D E+IG + A L P ++
Sbjct: 539 PVQVVVLPI-TDKHA--DYAKEVAKKLKAAGIRVEVDLRNEKIGYKIREAQLQKVPYMLV 595
Query: 406 VGSKFVSDSKVEIKHRLTGIREDMSLEEVIN 436
VG K V V ++ R MSL+E I
Sbjct: 596 VGDKEVEAGTVSVRRRGGKDLGTMSLDEFIE 626
>gnl|CDD|184826 PRK14799, thrS, threonyl-tRNA synthetase; Provisional.
Length = 545
Score = 51.8 bits (124), Expect = 3e-07
Identities = 36/155 (23%), Positives = 71/155 (45%), Gaps = 3/155 (1%)
Query: 38 GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA 97
G+ + P GQ + + A +RE + G E+ + D+W SG Y Y +++
Sbjct: 159 GLVLFHPKGQTIRNELIAFMREINDSMGYQEVYTSHVFKTDIWKISGHYTLYRDKLIVFN 218
Query: 98 DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFL 156
D+ + P + I++S ++YR+LP F + +R E + +G++R R F+
Sbjct: 219 MEGDEYGV-KPMNCPAHILIYKSKPRTYRDLPIRFSEFGHVYRWEKKGELYGLLRVRGFV 277
Query: 157 MKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLK 191
D + F L + + + + ++H+ G K
Sbjct: 278 QDDGHIF-LREDQLREEIKMLISKTVEVWHKFGFK 311
Score = 27.9 bits (62), Expect = 6.3
Identities = 21/90 (23%), Positives = 36/90 (40%), Gaps = 4/90 (4%)
Query: 363 DACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR- 421
+ EK+ + K D GE + + A G P +IVG K S+ V ++ R
Sbjct: 452 EYAEKVLNDMRKRRIRAEIDYAGETLSKRIKNAYDQGVPYILIVGKKEASEGTVTVRARG 511
Query: 422 ---LTGIREDMSLEEVINYASHRFSNNRPV 448
+ ++ + LE +I + R V
Sbjct: 512 NIEVRNVKFEKFLELLITEIAQRDVEQTTV 541
>gnl|CDD|183530 PRK12444, PRK12444, threonyl-tRNA synthetase; Reviewed.
Length = 639
Score = 50.1 bits (120), Expect = 1e-06
Identities = 38/139 (27%), Positives = 68/139 (48%), Gaps = 3/139 (2%)
Query: 31 MIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYG 90
M + + G+ +LP GQ + + A +RE Q E+ P + + +LW SG +D Y
Sbjct: 258 MFSEEAPGMPFYLPKGQIIRNELEAFLREIQKEYNYQEVRTPFMMNQELWERSGHWDHY- 316
Query: 91 KEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GV 149
K+ + ++ ++K+ P + +F++ + SYR LP + R E G+
Sbjct: 317 KDNMYFSEVDNKSFALKPMNCPGHMLMFKNKLHSYRELPIRMCEFGQVHRHEFSGALNGL 376
Query: 150 MRSREFLMKDAYSFDLTPE 168
+R R F DA+ F +TP+
Sbjct: 377 LRVRTFCQDDAHLF-VTPD 394
>gnl|CDD|178496 PLN02908, PLN02908, threonyl-tRNA synthetase.
Length = 686
Score = 49.0 bits (117), Expect = 2e-06
Identities = 39/138 (28%), Positives = 56/138 (40%), Gaps = 10/138 (7%)
Query: 31 MIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYG 90
H+ S G +LP G + + + IRE+ G E+ P + + DLW SG Y
Sbjct: 305 FFHELSPGSCFFLPHGARIYNKLMDFIREQYWERGYDEVITPNIYNMDLWETSGHAAHYK 364
Query: 91 KEMLRLADRND----KAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPR 146
+ M K M P H +F ++SYR LP + R+EL
Sbjct: 365 ENMFVFEIEKQEFGLKPM-NCPGH----CLMFAHRVRSYRELPLRLADFGVLHRNELSGA 419
Query: 147 F-GVMRSREFLMKDAYSF 163
G+ R R F DA+ F
Sbjct: 420 LTGLTRVRRFQQDDAHIF 437
>gnl|CDD|183422 PRK12305, thrS, threonyl-tRNA synthetase; Reviewed.
Length = 575
Score = 44.0 bits (105), Expect = 9e-05
Identities = 36/143 (25%), Positives = 57/143 (39%), Gaps = 32/143 (22%)
Query: 42 WLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRND 101
W P G + +R+E + G + P + +DLW SG D+Y + M
Sbjct: 201 WHPKGAIIRREIEDYLRKEHLKRGYEFVYTPHIGKSDLWKTSGHLDNYKENM-------- 252
Query: 102 KAMIYGPTHEEV-------MT-----DIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGV 149
+ P + M I++S ++SYR+LP + +R E + GV
Sbjct: 253 ----FPPMEIDEEEYYLKPMNCPGHILIYKSRLRSYRDLPLRLAEFGTVYRYE---KSGV 305
Query: 150 ----MRSREFLMKDAYSFDLTPE 168
R R F DA+ F TP+
Sbjct: 306 LHGLTRVRGFTQDDAHIF-CTPD 327
Score = 33.2 bits (77), Expect = 0.15
Identities = 18/71 (25%), Positives = 29/71 (40%)
Query: 366 EKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGI 425
E++ +L G V D E++ + A P ++VG K V V ++ R
Sbjct: 493 EEVAKKLRAAGIRVEVDTSNERLNKKIRNAQKQKIPYMLVVGDKEVEAGTVSVRTRDGEQ 552
Query: 426 REDMSLEEVIN 436
M L+E I
Sbjct: 553 LNGMPLDEFIE 563
>gnl|CDD|178335 PLN02734, PLN02734, glycyl-tRNA synthetase.
Length = 684
Score = 42.8 bits (101), Expect = 2e-04
Identities = 34/111 (30%), Positives = 50/111 (45%), Gaps = 15/111 (13%)
Query: 128 LPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHS-----YNKMFVSYL 182
LPF QI FR+E+ PR G++R REF + + F + PE H + F+ +
Sbjct: 274 LPFAAAQIGQAFRNEISPRQGLLRVREFTLAEIEHF-VDPEDKSHPKFSEVADLEFLLFP 332
Query: 183 RIFHRLGLKSIPMRA----ESGPIGGDLSHEFIVLADTGETQVFCSKDFMD 229
R G K+ PMR G + + FI G T +F +K +D
Sbjct: 333 REEQLGGQKAKPMRLGEAVSKGIVNNETLGYFI-----GRTYLFLTKLGID 378
Score = 35.5 bits (82), Expect = 0.030
Identities = 25/81 (30%), Positives = 34/81 (41%), Gaps = 5/81 (6%)
Query: 341 PDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGF 400
P VAP K ++ + +Q + I L+ G D G IG ++A D LG
Sbjct: 565 PPLVAPIKCTVFPL-VQNQQLNAVAKVISKELTAAGISHKIDITGTSIGKRYARTDELGV 623
Query: 401 PLQVIVGSKFVSDSKVEIKHR 421
P V V SD V I+ R
Sbjct: 624 PFAVTVD----SDGSVTIRER 640
>gnl|CDD|161851 TIGR00389, glyS_dimeric, glycyl-tRNA synthetase, dimeric type.
This model describes a glycyl-tRNA synthetase distinct
from the two alpha and two beta chains of the tetrameric
E. coli glycyl-tRNA synthetase. This enzyme is a
homodimeric class II tRNA synthetase and is recognized
by pfam model tRNA-synt_2b, which recognizes His, Ser,
Pro, and this set of glycyl-tRNA synthetases.
Length = 551
Score = 42.9 bits (101), Expect = 2e-04
Identities = 33/130 (25%), Positives = 67/130 (51%), Gaps = 12/130 (9%)
Query: 316 SYGIGAMRVVAAVIESSHDGKGI--------IWPDSVAPFKISLINIKAHDQVCRDACEK 367
S+GI R++ A++E S+ + + P +AP K++++ + +++ A E
Sbjct: 421 SFGID--RIIYALLEHSYQEEVLDGEEREVLRLPPHLAPIKVAVLPLVNKEELKEIAKE- 477
Query: 368 IYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRE 427
I+ L K G + +DD G IG ++ AD +G P V + + + D V I+ R + +
Sbjct: 478 IFQALRKTGIRIKYDDSG-TIGKRYRRADEIGTPFCVTIDFETLEDETVTIRERDSMKQV 536
Query: 428 DMSLEEVINY 437
+ ++E+ +Y
Sbjct: 537 RVKIKELPSY 546
Score = 41.4 bits (97), Expect = 4e-04
Identities = 19/48 (39%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
Query: 126 RNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHS 173
R LPF QI FR+E+ PR G+ R REF + F + P H
Sbjct: 180 RKLPFGVAQIGKSFRNEISPRNGLFRVREFEQAEIEFF-VHPLDKSHP 226
>gnl|CDD|178431 PLN02837, PLN02837, threonine-tRNA ligase.
Length = 614
Score = 42.6 bits (100), Expect = 2e-04
Identities = 29/95 (30%), Positives = 43/95 (45%), Gaps = 1/95 (1%)
Query: 72 PTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFT 131
P + ADLW SG D Y + M D D+ P + +++ + SYR+LP
Sbjct: 272 PHVAKADLWKTSGHLDFYKENMYDQMDIEDELYQLRPMNCPYHILVYKRKLHSYRDLPIR 331
Query: 132 FYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDL 165
++ +R EL G+ R R F DA+ F L
Sbjct: 332 VAELGTVYRYELSGSLHGLFRVRGFTQDDAHIFCL 366
>gnl|CDD|178812 PRK00037, hisS, histidyl-tRNA synthetase; Reviewed.
Length = 412
Score = 38.2 bits (90), Expect = 0.004
Identities = 20/76 (26%), Positives = 36/76 (47%)
Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
A K+ +L G V D G ++ QF AD G +I+G +++ V +K
Sbjct: 331 ELAALKLAEKLRAAGIRVELDYGGRKLKKQFKYADKSGARFVLILGEDELANGTVTVKDL 390
Query: 422 LTGIREDMSLEEVINY 437
TG ++ + L+E++
Sbjct: 391 RTGEQQTVPLDELVEA 406
>gnl|CDD|179698 PRK03991, PRK03991, threonyl-tRNA synthetase; Validated.
Length = 613
Score = 37.2 bits (87), Expect = 0.009
Identities = 21/74 (28%), Positives = 35/74 (47%)
Query: 363 DACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRL 422
D E++ +L G V DD E +G + A P V++G K + K+ + R
Sbjct: 513 DYAEEVADKLEAAGIRVDVDDRDESLGKKIRDAGKEWIPYVVVIGDKEMESGKLTVTIRE 572
Query: 423 TGIREDMSLEEVIN 436
+ +M+LEE+I
Sbjct: 573 ESEKVEMTLEELIE 586
Score = 28.3 bits (64), Expect = 4.1
Identities = 16/42 (38%), Positives = 22/42 (52%), Gaps = 2/42 (4%)
Query: 124 SYRNLPFTFYQI-QLKFRDELRPRF-GVMRSREFLMKDAYSF 163
SY+NLP Y++ FR E R G+ R R F M D ++
Sbjct: 303 SYKNLPLKMYELSTYSFRLEQRGELVGLKRLRAFTMPDMHTL 344
>gnl|CDD|184902 PRK14938, PRK14938, Ser-tRNA(Thr) hydrolase; Provisional.
Length = 387
Score = 36.7 bits (85), Expect = 0.013
Identities = 24/94 (25%), Positives = 48/94 (51%), Gaps = 3/94 (3%)
Query: 341 PDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGF 400
PD + P ++ ++ +K + D ++ RL K G V DD+ + +G++ A
Sbjct: 269 PDWLNPIQVRILPVK---KDFLDFSIQVAERLRKEGIRVNVDDLDDSLGNKIRRAGTEWI 325
Query: 401 PLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEV 434
P +I+G + V S + +K R ++ M++EE+
Sbjct: 326 PFVIIIGEREVKTSTLTVKIRANNEQKSMTVEEL 359
>gnl|CDD|184888 PRK14894, PRK14894, glycyl-tRNA synthetase; Provisional.
Length = 539
Score = 34.2 bits (78), Expect = 0.077
Identities = 15/32 (46%), Positives = 19/32 (59%)
Query: 124 SYRNLPFTFYQIQLKFRDELRPRFGVMRSREF 155
S R LPF Q+ FR+E+ PR + R REF
Sbjct: 160 SARKLPFGIAQVGKAFRNEINPRNFLFRVREF 191
>gnl|CDD|179765 PRK04173, PRK04173, glycyl-tRNA synthetase; Provisional.
Length = 456
Score = 32.8 bits (76), Expect = 0.18
Identities = 15/34 (44%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
Query: 123 KSYRN-LPFTFYQIQLKFRDELRPRFGVMRSREF 155
++ R LPF QI FR+E+ PR + R+REF
Sbjct: 179 RTARKKLPFGIAQIGKSFRNEITPRNFIFRTREF 212
>gnl|CDD|161881 TIGR00442, hisS, histidyl-tRNA synthetase. This model finds a
histidyl-tRNA synthetase in every completed genome.
Apparent second copies from Bacillus subtilis,
Synechocystis sp., and Aquifex aeolicus are slightly
shorter, more closely related to each other than to
other hisS proteins, and actually serve as regulatory
subunits for an enzyme of histidine biosynthesis. They
were excluded from the seed alignment and score much
lower than do single copy histidyl-tRNA synthetases of
other genomes not included in the seed alignment. These
putative second copies of HisS score below the trusted
cutoff. The regulatory protein kinase GCN2 of
Saccharomyces cerevisiae (YDR283c), and related proteins
from other species designated eIF-2 alpha kinase, have a
domain closely related to histidyl-tRNA synthetase that
may serve to detect and respond to uncharged tRNA(his),
an indicator of amino acid starvation; these regulatory
proteins are not orthologous and so score below the
noise cutoff.
Length = 397
Score = 32.4 bits (75), Expect = 0.26
Identities = 33/126 (26%), Positives = 47/126 (37%), Gaps = 16/126 (12%)
Query: 37 KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEML 94
+G +LP + IRE G E+ P + +L+ D KEM
Sbjct: 4 RGTRDFLPEEMIKWQYIEETIREVFELYGFKEIRTPIFEYTELFARKVGEETDIVEKEMY 63
Query: 95 RLADRNDK--AMIYGPTHEEVMT-DIFRSHI--KSYRNLPFTFYQIQLKFRDELRPRFGV 149
D+ + + E T + R+ I K PF Y I FR E RP+ G
Sbjct: 64 TFKDKGGRSLTLRP-----E-GTAPVARAVIENKLLLPKPFKLYYIGPMFRYE-RPQKG- 115
Query: 150 MRSREF 155
R R+F
Sbjct: 116 -RYRQF 120
Score = 31.3 bits (72), Expect = 0.48
Identities = 24/107 (22%), Positives = 43/107 (40%), Gaps = 9/107 (8%)
Query: 318 GIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGC 377
IG R++ + E + P + + ++ + + K+ +L K G
Sbjct: 300 AIGIERLLLLLEELG------LEPPEESSPDVYVVPLGEEAE---LEALKLAQKLRKAGI 350
Query: 378 DVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG 424
V D G ++ Q AD LG VI+G +++ V +K TG
Sbjct: 351 RVEVDLGGRKLKKQLKYADKLGARFAVILGEDELANGTVTLKDLETG 397
>gnl|CDD|152054 pfam11618, DUF3250, Protein of unknown function (DUF3250). This
family of proteins represents a protein with unknown
function. It may be the C2 domain from KIAA1005 however
this cannot be confirmed.
Length = 141
Score = 31.6 bits (72), Expect = 0.45
Identities = 8/29 (27%), Positives = 12/29 (41%)
Query: 202 IGGDLSHEFIVLADTGETQVFCSKDFMDF 230
I + + L+ FC+ DF DF
Sbjct: 17 IKATETPAGLELSGDFSPTTFCTYDFYDF 45
>gnl|CDD|182184 PRK09987, PRK09987, dTDP-4-dehydrorhamnose reductase; Provisional.
Length = 299
Score = 31.0 bits (70), Expect = 0.56
Identities = 19/55 (34%), Positives = 32/55 (58%), Gaps = 5/55 (9%)
Query: 80 WVESGRYDSYGKEMLRLA-DRNDKAMI---YG-PTHEEVMTDIFRSHIKSYRNLP 129
WV +G+ +++ K MLRLA +R + ++I +G PT E++ D I+ N P
Sbjct: 153 WVYAGKGNNFAKTMLRLAKEREELSVINDQFGAPTGAELLADCTAHAIRVALNKP 207
>gnl|CDD|183519 PRK12420, PRK12420, histidyl-tRNA synthetase; Provisional.
Length = 423
Score = 30.9 bits (70), Expect = 0.76
Identities = 37/135 (27%), Positives = 58/135 (42%), Gaps = 22/135 (16%)
Query: 34 QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRY---DSYG 90
++ KG +LP Q + + + + R G + PTL +L S +Y D
Sbjct: 5 RNVKGTKDYLPEEQVLRNKIKRALEDVFERYGCKPLETPTLNMYELM--SSKYGGGDEIL 62
Query: 91 KEMLRLADRNDK--AMIYGPT--HEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDE--LR 144
KE+ L D+ + A+ Y T +V+ +I+ LPF Y+I FRD +
Sbjct: 63 KEIYTLTDQGKRDLALRYDLTIPFAKVVA--MNPNIR----LPFKRYEIGKVFRDGPIKQ 116
Query: 145 PRFGVMRSREFLMKD 159
RF REF+ D
Sbjct: 117 GRF-----REFIQCD 126
>gnl|CDD|183106 PRK11375, PRK11375, allantoin permease; Provisional.
Length = 484
Score = 29.7 bits (67), Expect = 1.5
Identities = 10/30 (33%), Positives = 18/30 (60%)
Query: 232 IPSENTDFDDIISLNSIVEQWTAPYAATSD 261
+EN+ F ++ +N++V W AP + SD
Sbjct: 220 QKAENSGFLFLVVINAVVAVWAAPAVSASD 249
>gnl|CDD|152403 pfam11968, DUF3321, Protein of unknown function (DUF3321). This
family is conserved in fungi and is annotated as being a
nucleolar protein.
Length = 220
Score = 29.5 bits (67), Expect = 1.8
Identities = 12/24 (50%), Positives = 18/24 (75%), Gaps = 1/24 (4%)
Query: 226 DFMDFPIPSENTDFDDIISLNSIV 249
DFM+ P+P + ++ DIISL S+V
Sbjct: 92 DFMERPLPKDESEKFDIISL-SLV 114
>gnl|CDD|152202 pfam11766, Candida_ALS_N, Cell-wall agglutinin N-terminal
ligand-sugar binding. This is likely to be the sugar or
ligand binding domain of the yeast alpha-agglutinins.
Length = 249
Score = 29.2 bits (66), Expect = 2.5
Identities = 19/93 (20%), Positives = 34/93 (36%), Gaps = 7/93 (7%)
Query: 163 FDLTPEGSKHSYNKMFV----SYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGE 218
F+ P G+ + + S + P SG +G +S+ + + D
Sbjct: 121 FEAGPTGASPNDLVYYSRRSPSLNELQSYFLGGQCPNGYTSGTLGFTVSNGGVTI-DCST 179
Query: 219 TQVFCSKDFMD--FPIPSENTDFDDIISLNSIV 249
QV+ + D FP E+ + S NS+
Sbjct: 180 VQVYITNQLNDWYFPTSYESFSYTVTCSSNSLT 212
>gnl|CDD|177326 PHA01817, PHA01817, hypothetical protein.
Length = 479
Score = 28.5 bits (63), Expect = 3.8
Identities = 19/55 (34%), Positives = 27/55 (49%), Gaps = 7/55 (12%)
Query: 304 GADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIW----PDSVAPFKISLINI 354
G K Y+Q +YGIG VV AV + DG ++ P VAP ++ L +
Sbjct: 409 GFSSKPPYLQATAYGIGHTGVVVAVFD---DGSFLVANYNVPPYVAPSRVVLYTL 460
>gnl|CDD|162590 TIGR01899, cas_TM1807_csm5, CRISPR-associated RAMP protein, Csm5
family. CRISPR is a term for Clustered Regularly
Interspaced Short Palidromic Repeats. A number of
protein families appear only in association with these
repeats and are designated Cas (CRISPR associated)
proteins. Members of this cas gene family are found in
the mtube subtype of CRISPR/cas locus and designated
Csm5, for CRISPR/cas Subtype Mtube, protein 5.
Length = 365
Score = 27.8 bits (62), Expect = 6.1
Identities = 16/74 (21%), Positives = 29/74 (39%), Gaps = 4/74 (5%)
Query: 173 SYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPI 232
+++ V +++ + G IP+ AE G S V D E + F
Sbjct: 190 RTDRLIVHRIKLNYN-GRPGIPLYAECLDPGTTFSFN--VKIDREELKRG-LDRKKQFYA 245
Query: 233 PSENTDFDDIISLN 246
PSE + +I+ +
Sbjct: 246 PSEGENKLEILKIA 259
>gnl|CDD|180281 PRK05839, PRK05839, hypothetical protein; Provisional.
Length = 374
Score = 27.3 bits (61), Expect = 8.3
Identities = 17/59 (28%), Positives = 30/59 (50%), Gaps = 15/59 (25%)
Query: 206 LSHEFIVLADTGETQVFC-SKDFMDFPIPS--------ENTDFDDIISLNSIVEQWTAP 255
L H+FI++ D C S+ + + P PS N F +++ +NSI ++ +AP
Sbjct: 185 LKHDFILINDE------CYSEIYENTPPPSLLEASILVGNESFKNVLVINSISKRSSAP 237
Database: CddB
Posted date: Feb 4, 2011 9:54 PM
Number of letters in database: 5,994,473
Number of sequences in database: 21,608
Lambda K H
0.321 0.137 0.409
Gapped
Lambda K H
0.267 0.0655 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21608
Number of Hits to DB: 7,480,225
Number of extensions: 486526
Number of successful extensions: 804
Number of sequences better than 10.0: 1
Number of HSP's gapped: 786
Number of HSP's successfully gapped: 45
Length of query: 449
Length of database: 5,994,473
Length adjustment: 96
Effective length of query: 353
Effective length of database: 3,920,105
Effective search space: 1383797065
Effective search space used: 1383797065
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 59 (26.7 bits)