>gnl|CDD|130261 TIGR01193, bacteriocin_ABC, ABC-type bacteriocin transporter. This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc. Length = 708

Score = 70.9 bits (174), Expect = 3e-13 Identities = 56/229 (24%), Positives = 101/229 (44%), Gaps = 27/229 (11%) Query: 7 LLLQNVKHSYRQVGKPFPVLENVHLSLKKGEIVALVSPSGTGKSTILHIAGLLEVPDQGN 66 +++ +V +SY G +L ++ L++K +V SG+GKST+ + G Sbjct: 474 IVINDVSYSY---GYGSNILSDISLTIKMNSKTTIVGMSGSGKSTLAKLLVGFFQARSGE 530 Query: 67 VIIANQLCNKLSDDKKSFLRCSKIGFVYQEHRLLMDFSVIENIIFPQIIAGINHKTAYQ- 125 +++ L D + LR I ++ QE + S++EN++ G + Sbjct: 531 ILLNGFS---LKDIDRHTLRQF-INYLPQE-PYIFSGSILENLLL-----GAKENVSQDE 580 Query: 126 --RAMDLLSYMD----MSQ-YANRRSSD---ISGGEQQRVAICRAIANKPLIILADEPTG 175 A ++ D M Y S + ISGG++QR+A+ RA+ +++ DE T Sbjct: 581 IWAACEIAEIKDDIENMPLGYQTELSEEGSSISGGQKQRIALARALLTDSKVLILDESTS 640 Query: 176 NLDLKTAQQVFSILKYLVVRSGLAALIATHNHDLASQMDRQITIRDGMI 224 NLD T ++ I+ L+ + H +A Q D+ I + G I Sbjct: 641 NLDTITEKK---IVNNLLNLQDKTIIFVAHRLSVAKQSDKIIVLDHGKI 686

RPSBLAST alignment for GI: 254780871 and conserved domain: TIGR01193