RPSBLAST alignment for GI: 254780871 and conserved domain: TIGR01194

>gnl|CDD|130262 TIGR01194, cyc_pep_trnsptr, cyclic peptide transporter. This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake. Length = 555
 Score = 50.0 bits (119), Expect = 6e-07
 Identities = 48/225 (21%), Positives = 104/225 (46%), Gaps = 21/225 (9%)

Query: 7   LLLQNVKHSYR--QVGKPFPVLENVHLSLKKGEIVALVSPSGTGKSTILHIAGLLEVPDQ 64
           + L++V  + +  +  + F  L  + L + +G+IV +V  +G GKST+  +   L +P +
Sbjct: 338 IELKDVHMNPKAPEGSEGF-ALGPIDLRIAQGDIVFIVGENGCGKSTLAKLFCGLYIPQE 396

Query: 65  GNVIIANQLCNKLSDDKKSFLR--CSKIGFVYQEHRLLMDFSVIENIIFPQI--IAGINH 120
           G +++       +S D +   R   S I           DF + +++I P     A +++
Sbjct: 397 GEILLDGA---AVSADSRDDYRDLFSAI---------FADFHLFDDLIGPDEGEHASLDN 444

Query: 121 KTAYQRAMDLLSYMDMSQYANRRSSDISGGEQQRVA-ICRAIANKPLIILADEPTGNLDL 179
              Y + +++   + +       ++ +S G+Q+R+A IC  + ++P+++  DE   + D 
Sbjct: 445 AQQYLQRLEIADKVKIEDGGFSTTTALSTGQQKRLALICAWLEDRPILLF-DEWAADQDP 503

Query: 180 KTAQQVFSILKYLVVRSGLAALIATHNHDLASQMDRQITIRDGMI 224
              +  +  L   + R G   +I +H+       D+ I +  G I
Sbjct: 504 AFKRFFYEELLPDLKRQGKTIIIISHDDQYFELADQIIKLAAGCI 548