RPSBLAST alignment for GI: 254780871 and conserved domain: cd03229
>gnl|CDD|72988 cd03229, ABC_Class3, This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.. Length = 178
Score = 136 bits (345), Expect = 4e-33
Identities = 76/217 (35%), Positives = 114/217 (52%), Gaps = 41/217 (18%)
Query: 7 LLLQNVKHSYRQVGKPFPVLENVHLSLKKGEIVALVSPSGTGKSTILHIAGLLEVPDQGN 66
L L+NV Y Q VL +V L+++ GEIVAL+ PSG+GKST+L LE PD G+
Sbjct: 1 LELKNVSKRYGQK----TVLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEEPDSGS 56
Query: 67 VIIANQLCNKLSDDKKSFLRCSKIGFVYQEHRLLMDFSVIENIIFPQIIAGINHKTAYQR 126
++I + L D+ R +IG V+Q+ L +V+ENI
Sbjct: 57 ILIDGEDLTDLEDELPPLRR--RIGMVFQDFALFPHLTVLENIALG-------------- 100
Query: 127 AMDLLSYMDMSQYANRRSSDISGGEQQRVAICRAIANKPLIILADEPTGNLDLKTAQQVF 186
+SGG+QQRVA+ RA+A P ++L DEPT LD T ++V
Sbjct: 101 --------------------LSGGQQQRVALARALAMDPDVLLLDEPTSALDPITRREVR 140
Query: 187 SILKYLVVRSGLAALIATHNHDLASQM-DRQITIRDG 222
++LK L + G+ ++ TH+ D A+++ DR + +RDG
Sbjct: 141 ALLKSLQAQLGITVVLVTHDLDEAARLADRVVVLRDG 177