RPSBLAST alignment for GI: 254780871 and conserved domain: cd03248
>gnl|CDD|73007 cd03248, ABCC_TAP, TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.. Length = 226
Score = 84.2 bits (208), Expect = 3e-17
Identities = 64/222 (28%), Positives = 104/222 (46%), Gaps = 15/222 (6%)
Query: 9 LQNVKHSYRQVGKP-FPVLENVHLSLKKGEIVALVSPSGTGKSTILHIAGLLEVPDQGNV 67
QNV +Y +P VL++V +L GE+ ALV PSG+GKST++ + P G V
Sbjct: 14 FQNVTFAYPT--RPDTLVLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQPQGGQV 71
Query: 68 IIANQLCNKLSDDKKSFLRCSKIGFVYQEHRLLMDFSVIENIIFPQIIAGINHKTAYQR- 126
++ + +S + +L SK+ V QE +L S+ +NI + +
Sbjct: 72 LLDGK---PISQYEHKYLH-SKVSLVGQE-PVLFARSLQDNIAYGLQSCSFECVKEAAQK 126
Query: 127 --AMDLLSYMDMSQY--ANRRSSDISGGEQQRVAICRAIANKPLIILADEPTGNLDLKTA 182
A +S + + S +SGG++QRVAI RA+ P +++ DE T LD ++
Sbjct: 127 AHAHSFISELASGYDTEVGEKGSQLSGGQKQRVAIARALIRNPQVLILDEATSALDAESE 186
Query: 183 QQVFSILKYLVVRSGLAALIATHNHDLASQMDRQITIRDGMI 224
QQV L R + L+ H + D+ + + G I
Sbjct: 187 QQVQQALYDWPERRTV--LVIAHRLSTVERADQILVLDGGRI 226