RPSBLAST alignment for GI: 254780871 and conserved domain: cd03251

>gnl|CDD|73010 cd03251, ABCC_MsbA, MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.. Length = 234
 Score = 94.1 bits (234), Expect = 3e-20
 Identities = 67/225 (29%), Positives = 106/225 (47%), Gaps = 18/225 (8%)

Query: 9   LQNVKHSYRQVGKPFPVLENVHLSLKKGEIVALVSPSGTGKSTILHIAGLLEVPDQGNVI 68
            +NV   Y   G   PVL ++ L +  GE VALV PSG+GKST++++       D G ++
Sbjct: 3   FKNVTFRYP--GDGPPVLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYDVDSGRIL 60

Query: 69  IANQLCNKLSDDKKSFLRCSKIGFVYQEHRLLMDFSVIENIIF-------PQIIAGINHK 121
           I       + D   + LR  +IG V Q+  L  D +V ENI +        ++       
Sbjct: 61  IDGH---DVRDYTLASLR-RQIGLVSQDVFLFND-TVAENIAYGRPGATREEVEEAARAA 115

Query: 122 TAYQRAMDLLSYMDMSQYANRRSSDISGGEQQRVAICRAIANKPLIILADEPTGNLDLKT 181
            A++  M+L    D       R   +SGG++QR+AI RA+   P I++ DE T  LD ++
Sbjct: 116 NAHEFIMELPEGYD--TVIGERGVKLSGGQRQRIAIARALLKDPPILILDEATSALDTES 173

Query: 182 AQQVFSILKYLVVRSGLAALIATHNHDLASQMDRQITIRDGMIAD 226
            + V + L+ L+        +  H        DR + + DG I +
Sbjct: 174 ERLVQAALERLMK--NRTTFVIAHRLSTIENADRIVVLEDGKIVE 216