RPSBLAST alignment for GI: 254780871 and conserved domain: cd03271
>gnl|CDD|73030 cd03271, ABC_UvrA_II, The excision repair protein UvrA domain II; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases.. Length = 261
Score = 44.0 bits (104), Expect = 3e-05
Identities = 51/236 (21%), Positives = 96/236 (40%), Gaps = 54/236 (22%)
Query: 26 LENVHLSLKKGEIVALVSPSGTGKSTILH------IAGLL----EVPDQGNVIIANQLCN 75
L+N+ + + G + + SG+GKS++++ +A L E P + I + +
Sbjct: 11 LKNIDVDIPLGVLTCVTGVSGSGKSSLINDTLYPALARRLHLKKEQPGNHDRIEGLEHID 70
Query: 76 KLSD---------------------DKKSFLRCSKI-GFVYQEHRL-----------LMD 102
K+ D+ L C G Y L ++D
Sbjct: 71 KVIVIDQSPIGRTPRSNPATYTGVFDEIRELFCEVCKGKRYNRETLEVRYKGKSIADVLD 130
Query: 103 FSVIENIIFPQIIAGINHKTAYQRAMDL-LSYMDMSQYANRRSSDISGGEQQRVAICRAI 161
+V E + F + I I K Q D+ L Y+ + Q ++ +SGGE QR+ + + +
Sbjct: 131 MTVEEALEFFENIPKIARKL--QTLCDVGLGYIKLGQ----PATTLSGGEAQRIKLAKEL 184
Query: 162 ANK---PLIILADEPTGNLDLKTAQQVFSILKYLVVRSGLAALIATHNHDLASQMD 214
+ + + + DEPT L +++ +L+ LV + G ++ HN D+ D
Sbjct: 185 SKRSTGKTLYILDEPTTGLHFHDVKKLLEVLQRLVDK-GNTVVVIEHNLDVIKCAD 239