RPSBLAST alignment for GI: 254780871 and conserved domain: cd03294
>gnl|CDD|73053 cd03294, ABC_Pro_Gly_Bertaine, This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.. Length = 269
Score = 119 bits (301), Expect = 5e-28
Identities = 64/206 (31%), Positives = 105/206 (50%), Gaps = 3/206 (1%)
Query: 21 KPFPVLENVHLSLKKGEIVALVSPSGTGKSTIL-HIAGLLEVPDQGNVIIANQLCNKLSD 79
+ +V L +++GEI ++ SG+GKST+L I L+E P G V+I Q +S
Sbjct: 35 GQTVGVNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIE-PTSGKVLIDGQDIAAMSR 93
Query: 80 DKKSFLRCSKIGFVYQEHRLLMDFSVIENIIFPQIIAGINHKTAYQRAMDLLSYMDMSQY 139
+ LR KI V+Q LL +V+EN+ F + G+ +RA + L + + +
Sbjct: 94 KELRELRRKKISMVFQSFALLPHRTVLENVAFGLEVQGVPRAEREERAAEALELVGLEGW 153
Query: 140 ANRRSSDISGGEQQRVAICRAIANKPLIILADEPTGNLDLKTAQQVFSILKYLVVRSGLA 199
++ ++SGG QQRV + RA+A P I+L DE LD +++ L L
Sbjct: 154 EHKYPDELSGGMQQRVGLARALAVDPDILLMDEAFSALDPLIRREMQDELLRLQAELQKT 213
Query: 200 ALIATHNHDLASQM-DRQITIRDGMI 224
+ TH+ D A ++ DR ++DG +
Sbjct: 214 IVFITHDLDEALRLGDRIAIMKDGRL 239