RPS-BLAST 2.2.22 [Sep-27-2009] Database: CddA 21,609 sequences; 6,263,737 total letters Searching..................................................done Query= gi|254780871|ref|YP_003065284.1| lipoprotein-releasing system ATP-binding protein lolD [Candidatus Liberibacter asiaticus str. psy62] (227 letters) >gnl|CDD|73014 cd03255, ABC_MJ0796_Lo1CDE_FtsE, This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.. Length = 218 Score = 240 bits (615), Expect = 2e-64 Identities = 94/218 (43%), Positives = 138/218 (63%) Query: 7 LLLQNVKHSYRQVGKPFPVLENVHLSLKKGEIVALVSPSGTGKSTILHIAGLLEVPDQGN 66 + L+N+ +Y G+ L+ V LS++KGE VA+V PSG+GKST+L+I G L+ P G Sbjct: 1 IELKNLSKTYGGGGEKVQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRPTSGE 60 Query: 67 VIIANQLCNKLSDDKKSFLRCSKIGFVYQEHRLLMDFSVIENIIFPQIIAGINHKTAYQR 126 V + +KLS+ + + R IGFV+Q LL D + +EN+ P ++AG+ K +R Sbjct: 61 VRVDGTDISKLSEKELAAFRRRHIGFVFQSFNLLPDLTALENVELPLLLAGVPKKERRER 120 Query: 127 AMDLLSYMDMSQYANRRSSDISGGEQQRVAICRAIANKPLIILADEPTGNLDLKTAQQVF 186 A +LL + + N S++SGG+QQRVAI RA+AN P IILADEPTGNLD +T ++V Sbjct: 121 AEELLERVGLGDRLNHYPSELSGGQQQRVAIARALANDPKIILADEPTGNLDSETGKEVM 180 Query: 187 SILKYLVVRSGLAALIATHNHDLASQMDRQITIRDGMI 224 +L+ L +G ++ TH+ +LA DR I +RDG I Sbjct: 181 ELLRELNKEAGTTIVVVTHDPELAEYADRIIELRDGKI 218 >gnl|CDD|31331 COG1136, SalX, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]. Length = 226 Score = 229 bits (586), Expect = 5e-61 Identities = 94/222 (42%), Positives = 142/222 (63%), Gaps = 1/222 (0%) Query: 6 VLLLQNVKHSYRQVGKPFPVLENVHLSLKKGEIVALVSPSGTGKSTILHIAGLLEVPDQG 65 ++ L+NV Y G+ L++V+L ++ GE VA+V PSG+GKST+L++ G L+ P G Sbjct: 1 MIELKNVSKIYGLGGEKVEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDKPTSG 60 Query: 66 NVIIANQLCNKLSDDKKSFLRCSKIGFVYQEHRLLMDFSVIENIIFPQIIAGINHKTAYQ 125 V+I + KLS+ + + LR KIGFV+Q LL D +V+EN+ P +IAG + + Sbjct: 61 EVLINGKDLTKLSEKELAKLRRKKIGFVFQNFNLLPDLTVLENVELPLLIAGKSAGRRKR 120 Query: 126 RAMDLLSYMDMS-QYANRRSSDISGGEQQRVAICRAIANKPLIILADEPTGNLDLKTAQQ 184 A +LL + + + ++ S++SGG+QQRVAI RA+ N P IILADEPTGNLD KTA++ Sbjct: 121 AAEELLEVLGLEDRLLKKKPSELSGGQQQRVAIARALINNPKIILADEPTGNLDSKTAKE 180 Query: 185 VFSILKYLVVRSGLAALIATHNHDLASQMDRQITIRDGMIAD 226 V +L+ L G ++ TH+ +LA DR I ++DG I + Sbjct: 181 VLELLRELNKERGKTIIMVTHDPELAKYADRVIELKDGKIEE 222 >gnl|CDD|32710 COG2884, FtsE, Predicted ATPase involved in cell division [Cell division and chromosome partitioning]. Length = 223 Score = 183 bits (466), Expect = 3e-47 Identities = 78/216 (36%), Positives = 121/216 (56%), Gaps = 7/216 (3%) Query: 16 YRQVGKPFP----VLENVHLSLKKGEIVALVSPSGTGKSTILHIAGLLEVPDQGNVIIAN 71 + V K +P L +V + KGE V L PSG GKST+L + E P +G +++ Sbjct: 4 FENVSKAYPGGREALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERPTRGKILVNG 63 Query: 72 QLCNKLSDDKKSFLRCSKIGFVYQEHRLLMDFSVIENIIFPQIIAGINHKTAYQRAMDLL 131 ++L + FLR +IG V+Q+ RLL D +V EN+ P + G + +R ++L Sbjct: 64 HDLSRLKGREIPFLR-RQIGVVFQDFRLLPDRTVYENVALPLRVIGKPPREIRRRVSEVL 122 Query: 132 SYMDMSQYANRRSSDISGGEQQRVAICRAIANKPLIILADEPTGNLDLKTAQQVFSILKY 191 + + A S +SGGEQQRVAI RAI N+P ++LADEPTGNLD + ++ + + Sbjct: 123 DLVGLKHKARALPSQLSGGEQQRVAIARAIVNQPAVLLADEPTGNLDPDLSWEIMRLFEE 182 Query: 192 LVVRSGLAALIATHNHDLASQMD-RQITIRDGMIAD 226 + R G L+ATH+ +L ++M R + + DG + Sbjct: 183 I-NRLGTTVLMATHDLELVNRMRHRVLALEDGRLVR 217 >gnl|CDD|33919 COG4181, COG4181, Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]. Length = 228 Score = 175 bits (446), Expect = 6e-45 Identities = 76/224 (33%), Positives = 127/224 (56%) Query: 1 MDSAEVLLLQNVKHSYRQVGKPFPVLENVHLSLKKGEIVALVSPSGTGKSTILHIAGLLE 60 M + ++ + ++ + Q +L+ V L +K+GE VA+V PSG+GKST+L + L+ Sbjct: 1 MPAENIIEVHHLSKTVGQGEGELSILKGVELVVKRGETVAIVGPSGSGKSTLLAVLAGLD 60 Query: 61 VPDQGNVIIANQLCNKLSDDKKSFLRCSKIGFVYQEHRLLMDFSVIENIIFPQIIAGINH 120 P G V + Q +KL +D ++ LR +GFV+Q L+ + + +EN+ P + G + Sbjct: 61 DPSSGEVRLLGQPLHKLDEDARAALRARHVGFVFQSFHLIPNLTALENVALPLELRGESS 120 Query: 121 KTAYQRAMDLLSYMDMSQYANRRSSDISGGEQQRVAICRAIANKPLIILADEPTGNLDLK 180 + A LL + + + + +SGGEQQRVA+ RA A +P ++ ADEPTGNLD Sbjct: 121 ADSRAGAKALLEAVGLGKRLTHYPAQLSGGEQQRVALARAFAGRPDVLFADEPTGNLDRA 180 Query: 181 TAQQVFSILKYLVVRSGLAALIATHNHDLASQMDRQITIRDGMI 224 T ++ +L L G ++ TH+ LA++ DRQ+ +R G + Sbjct: 181 TGDKIADLLFALNRERGTTLVLVTHDPQLAARCDRQLRLRSGRL 224 >gnl|CDD|73015 cd03256, ABC_PhnC_transporter, ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.. Length = 241 Score = 161 bits (410), Expect = 1e-40 Identities = 81/229 (35%), Positives = 130/229 (56%), Gaps = 15/229 (6%) Query: 7 LLLQNVKHSYRQVGKPFPVLENVHLSLKKGEIVALVSPSGTGKSTIL-HIAGLLEVPDQG 65 + ++N+ +Y L++V LS+ GE VAL+ PSG GKST+L + GL+E P G Sbjct: 1 IEVENLSKTY---PNGKKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVE-PTSG 56 Query: 66 NVIIANQLCNKLSDDKKSFLRCSKIGFVYQEHRLLMDFSVIENIIFP--------QIIAG 117 +V+I NKL LR +IG ++Q+ L+ SV+EN++ + + G Sbjct: 57 SVLIDGTDINKLKGKALRQLR-RQIGMIFQQFNLIERLSVLENVLSGRLGRRSTWRSLFG 115 Query: 118 INHKTAYQRAMDLLSYMDMSQYANRRSSDISGGEQQRVAICRAIANKPLIILADEPTGNL 177 + K QRA+ L + + A +R+ +SGG+QQRVAI RA+ +P +ILADEP +L Sbjct: 116 LFPKEEKQRALAALERVGLLDKAYQRADQLSGGQQQRVAIARALMQQPKLILADEPVASL 175 Query: 178 DLKTAQQVFSILKYLVVRSGLAALIATHNHDLASQ-MDRQITIRDGMIA 225 D +++QV +LK + G+ +++ H DLA + DR + ++DG I Sbjct: 176 DPASSRQVMDLLKRINREEGITVIVSLHQVDLAREYADRIVGLKDGRIV 224 >gnl|CDD|73051 cd03292, ABC_FtsE_transporter, FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.. Length = 214 Score = 161 bits (408), Expect = 2e-40 Identities = 78/214 (36%), Positives = 119/214 (55%), Gaps = 7/214 (3%) Query: 16 YRQVGKPFP----VLENVHLSLKKGEIVALVSPSGTGKSTILHIAGLLEVPDQGNVIIAN 71 + V K +P L+ +++S+ GE V LV PSG GKST+L + E+P G + + Sbjct: 3 FINVTKTYPNGTAALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELPTSGTIRVNG 62 Query: 72 QLCNKLSDDKKSFLRCSKIGFVYQEHRLLMDFSVIENIIFPQIIAGINHKTAYQRAMDLL 131 Q + L +LR KIG V+Q+ RLL D +V EN+ F + G+ + +R L Sbjct: 63 QDVSDLRGRAIPYLR-RKIGVVFQDFRLLPDRNVYENVAFALEVTGVPPREIRKRVPAAL 121 Query: 132 SYMDMSQYANRRSSDISGGEQQRVAICRAIANKPLIILADEPTGNLDLKTAQQVFSILKY 191 + +S +++SGGEQQRVAI RAI N P I++ADEPTGNLD T ++ ++LK Sbjct: 122 ELVGLSHKHRALPAELSGGEQQRVAIARAIVNSPTILIADEPTGNLDPDTTWEIMNLLKK 181 Query: 192 LVVRSGLAALIATHNHDLASQMD-RQITIRDGMI 224 + ++G ++ATH +L R I + G + Sbjct: 182 -INKAGTTVVVATHAKELVDTTRHRVIALERGKL 214 >gnl|CDD|73052 cd03293, ABC_NrtD_SsuB_transporters, NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.. Length = 220 Score = 158 bits (402), Expect = 1e-39 Identities = 73/210 (34%), Positives = 112/210 (53%), Gaps = 10/210 (4%) Query: 7 LLLQNVKHSYRQVGKPFPVLENVHLSLKKGEIVALVSPSGTGKSTILHIAGLLEVPDQGN 66 L ++NV +Y G LE++ LS+++GE VALV PSG GKST+L I LE P G Sbjct: 1 LEVRNVSKTYGGGGGAVTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPTSGE 60 Query: 67 VIIANQLCNKLSDDKKSFLRCSKIGFVYQEHRLLMDFSVIENIIFPQIIAGINHKTAYQR 126 V++ + D G+V+Q+ LL +V++N+ + G+ A +R Sbjct: 61 VLVDGEPVTGPGPD---------RGYVFQQDALLPWLTVLDNVALGLELQGVPKAEARER 111 Query: 127 AMDLLSYMDMSQYANRRSSDISGGEQQRVAICRAIANKPLIILADEPTGNLDLKTAQQVF 186 A +LL + +S + N +SGG +QRVA+ RA+A P ++L DEP LD T +Q+ Sbjct: 112 AEELLELVGLSGFENAYPHQLSGGMRQRVALARALAVDPDVLLLDEPFSALDALTREQLQ 171 Query: 187 SILKYLVVRSGLAALIATHNHDLASQM-DR 215 L + +G L+ TH+ D A + DR Sbjct: 172 EELLDIWRETGKTVLLVTHDIDEAVFLADR 201 >gnl|CDD|31323 COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]. Length = 240 Score = 155 bits (393), Expect = 1e-38 Identities = 71/220 (32%), Positives = 122/220 (55%), Gaps = 10/220 (4%) Query: 9 LQNVKHSYRQVGKPFPVLENVHLSLKKGEIVALVSPSGTGKSTILHIAGLLEVPDQGNVI 68 ++N+ S+ VL+ + LS++KGE+V ++ PSG+GKST+L LE PD G++ Sbjct: 5 IKNLSKSFGD----KEVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEEPDSGSIT 60 Query: 69 IANQLCNKLSDDKKSFLRCSKIGFVYQEHRLLMDFSVIENIIFPQIIA-GINHKTAYQRA 127 + + + D K K+G V+Q+ L +V+EN+ + ++ A ++A Sbjct: 61 VDGE---DVGDKKDILKLRRKVGMVFQQFNLFPHLTVLENVTLAPVKVKKLSKAEAREKA 117 Query: 128 MDLLSYMDMSQYANRRSSDISGGEQQRVAICRAIANKPLIILADEPTGNLDLKTAQQVFS 187 ++LL + ++ A+ + +SGG+QQRVAI RA+A P ++L DEPT LD + +V Sbjct: 118 LELLEKVGLADKADAYPAQLSGGQQQRVAIARALAMDPKVMLFDEPTSALDPELVGEVLD 177 Query: 188 ILKYLVVRSGLAALIATHNHDLASQM-DRQITIRDGMIAD 226 ++K L G+ +I TH A ++ DR I + G I + Sbjct: 178 VMKDL-AEEGMTMIIVTHEMGFAREVADRVIFMDQGKIIE 216 >gnl|CDD|33436 COG3638, COG3638, ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]. Length = 258 Score = 154 bits (391), Expect = 2e-38 Identities = 75/225 (33%), Positives = 127/225 (56%), Gaps = 18/225 (8%) Query: 15 SYRQVGKPFP----VLENVHLSLKKGEIVALVSPSGTGKSTIL-HIAGLLEVPDQGNVII 69 + + K +P L++V+L + +GE+VA++ PSG GKST+L + GL++ P G ++ Sbjct: 5 EVKNLSKTYPGGHQALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVD-PTSGEILF 63 Query: 70 AN-QLCNKLSDDKKSFLRCSKIGFVYQEHRLLMDFSVIENIIFP--------QIIAGINH 120 Q+ + + R IG ++Q+ L+ SV+EN++ + + G+ Sbjct: 64 NGVQITKLKGKELRKLRR--DIGMIFQQFNLVPRLSVLENVLLGRLGYTSTWRSLFGLFS 121 Query: 121 KTAYQRAMDLLSYMDMSQYANRRSSDISGGEQQRVAICRAIANKPLIILADEPTGNLDLK 180 K +A+D L + + A +R+S +SGG+QQRVAI RA+ +P IILADEP +LD + Sbjct: 122 KEDKAQALDALERVGILDKAYQRASTLSGGQQQRVAIARALVQQPKIILADEPVASLDPE 181 Query: 181 TAQQVFSILKYLVVRSGLAALIATHNHDLASQM-DRQITIRDGMI 224 +A++V ILK + G+ ++ H DLA + DR I ++ G I Sbjct: 182 SAKKVMDILKDINQEDGITVIVNLHQVDLAKKYADRIIGLKAGRI 226 >gnl|CDD|73017 cd03258, ABC_MetN_methionine_transporter, MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.. Length = 233 Score = 152 bits (386), Expect = 6e-38 Identities = 70/220 (31%), Positives = 117/220 (53%), Gaps = 2/220 (0%) Query: 9 LQNVKHSYRQVGKPFPVLENVHLSLKKGEIVALVSPSGTGKSTILHIAGLLEVPDQGNVI 68 L+NV + G L++V LS+ KGEI ++ SG GKST++ LE P G+V+ Sbjct: 4 LKNVSKVFGDTGGKVTALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERPTSGSVL 63 Query: 69 IANQLCNKLSDDKKSFLRCSKIGFVYQEHRLLMDFSVIENIIFPQIIAGINHKTAYQRAM 128 + LS + R +IG ++Q LL +V EN+ P IAG+ +R + Sbjct: 64 VDGTDLTLLSGKELRKAR-RRIGMIFQHFNLLSSRTVFENVALPLEIAGVPKAEIEERVL 122 Query: 129 DLLSYMDMSQYANRRSSDISGGEQQRVAICRAIANKPLIILADEPTGNLDLKTAQQVFSI 188 +LL + + A+ + +SGG++QRV I RA+AN P ++L DE T LD +T Q + ++ Sbjct: 123 ELLELVGLEDKADAYPAQLSGGQKQRVGIARALANNPKVLLCDEATSALDPETTQSILAL 182 Query: 189 LKYLVVRSGLAALIATHNHDLASQM-DRQITIRDGMIADL 227 L+ + GL ++ TH ++ ++ DR + G + + Sbjct: 183 LRDINRELGLTIVLITHEMEVVKRICDRVAVMEKGEVVEE 222 >gnl|CDD|31330 COG1135, AbcC, ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]. Length = 339 Score = 152 bits (385), Expect = 9e-38 Identities = 81/218 (37%), Positives = 123/218 (56%), Gaps = 3/218 (1%) Query: 9 LQNVKHSYRQVG-KPFPVLENVHLSLKKGEIVALVSPSGTGKSTILHIAGLLEVPDQGNV 67 L+NV ++ Q G L++V L + KGEI ++ SG GKST+L + LLE P G+V Sbjct: 4 LENVSKTFGQTGTGTVTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLERPTSGSV 63 Query: 68 IIANQLCNKLSDDKKSFLRCSKIGFVYQEHRLLMDFSVIENIIFPQIIAGINHKTAYQRA 127 + Q LS+ + LR KIG ++Q LL +V EN+ FP +AG+ QR Sbjct: 64 FVDGQDLTALSEAELRQLR-QKIGMIFQHFNLLSSRTVFENVAFPLELAGVPKAEIKQRV 122 Query: 128 MDLLSYMDMSQYANRRSSDISGGEQQRVAICRAIANKPLIILADEPTGNLDLKTAQQVFS 187 +LL + +S A+R + +SGG++QRVAI RA+AN P I+L DE T LD +T Q + Sbjct: 123 AELLELVGLSDKADRYPAQLSGGQKQRVAIARALANNPKILLCDEATSALDPETTQSILE 182 Query: 188 ILKYLVVRSGLAALIATHNHDLASQM-DRQITIRDGMI 224 +LK + GL ++ TH ++ ++ DR + G + Sbjct: 183 LLKDINRELGLTIVLITHEMEVVKRICDRVAVLDQGRL 220 >gnl|CDD|73021 cd03262, ABC_HisP_GlnQ_permeases, HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQMP system of S. typhimurium, where HisJ is the extracellular solute binding proteins and HisP is the ABC protein.. Length = 213 Score = 151 bits (384), Expect = 1e-37 Identities = 83/219 (37%), Positives = 129/219 (58%), Gaps = 11/219 (5%) Query: 9 LQNVKHSYRQVGKPFPVLENVHLSLKKGEIVALVSPSGTGKSTILHIAGLLEVPDQGNVI 68 ++N+ S+ F VL+ + L++KKGE+V ++ PSG+GKST+L LLE PD G +I Sbjct: 3 IKNLHKSF----GDFHVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEEPDSGTII 58 Query: 69 IANQLCNKLSDDKKSFLRC-SKIGFVYQEHRLLMDFSVIENIIFPQIIA-GINHKTAYQR 126 I KL+DDKK+ K+G V+Q+ L +V+ENI I G++ A +R Sbjct: 59 IDGL---KLTDDKKNINELRQKVGMVFQQFNLFPHLTVLENITLAPIKVKGMSKAEAEER 115 Query: 127 AMDLLSYMDMSQYANRRSSDISGGEQQRVAICRAIANKPLIILADEPTGNLDLKTAQQVF 186 A++LL + ++ A+ + +SGG+QQRVAI RA+A P ++L DEPT LD + +V Sbjct: 116 ALELLEKVGLADKADAYPAQLSGGQQQRVAIARALAMNPKVMLFDEPTSALDPELVGEVL 175 Query: 187 SILKYLVVRSGLAALIATHNHDLASQM-DRQITIRDGMI 224 ++K L G+ ++ TH A ++ DR I + DG I Sbjct: 176 DVMKDL-AEEGMTMVVVTHEMGFAREVADRVIFMDDGRI 213 >gnl|CDD|33633 COG3842, PotA, ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]. Length = 352 Score = 151 bits (382), Expect = 2e-37 Identities = 68/223 (30%), Positives = 114/223 (51%), Gaps = 12/223 (5%) Query: 6 VLLLQNVKHSYRQVGKPFPVLENVHLSLKKGEIVALVSPSGTGKSTILHIAGLLEVPDQG 65 L ++NV S+ F ++++ L +KKGE V L+ PSG GK+T+L + E P G Sbjct: 5 ALEIRNVSKSFGD----FTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPSSG 60 Query: 66 NVIIANQLCNKLSDDKKSFLRCSKIGFVYQEHRLLMDFSVIENIIFP-QIIAGINHKTAY 124 +++ + + +K+ IG V+Q + L +V EN+ F ++ + Sbjct: 61 EILLDGEDITDVPPEKR------PIGMVFQSYALFPHMTVEENVAFGLKVRKKLKKAEIK 114 Query: 125 QRAMDLLSYMDMSQYANRRSSDISGGEQQRVAICRAIANKPLIILADEPTGNLDLKTAQQ 184 R + L + + +A+R+ +SGG+QQRVA+ RA+ +P ++L DEP LD K +Q Sbjct: 115 ARVEEALELVGLEGFADRKPHQLSGGQQQRVALARALVPEPKVLLLDEPLSALDAKLREQ 174 Query: 185 VFSILKYLVVRSGLAALIATHNHDLASQM-DRQITIRDGMIAD 226 + LK L G+ + TH+ + A M DR + DG I Sbjct: 175 MRKELKELQRELGITFVYVTHDQEEALAMSDRIAVMNDGRIEQ 217 >gnl|CDD|73018 cd03259, ABC_Carb_Solutes_like, ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.. Length = 213 Score = 151 bits (382), Expect = 2e-37 Identities = 72/221 (32%), Positives = 119/221 (53%), Gaps = 13/221 (5%) Query: 7 LLLQNVKHSYRQVGKPFPVLENVHLSLKKGEIVALVSPSGTGKSTILH-IAGLLEVPDQG 65 L L+ + +Y V L+++ L+++ GE +AL+ PSG GK+T+L IAGL E PD G Sbjct: 1 LELKGLSKTYGSV----RALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGL-ERPDSG 55 Query: 66 NVIIANQLCNKLSDDKKSFLRCSKIGFVYQEHRLLMDFSVIENIIFPQIIAGINHKTAYQ 125 ++I + + +++ IG V+Q++ L +V ENI F + G+ Sbjct: 56 EILIDGRDVTGVPPERR------NIGMVFQDYALFPHLTVAENIAFGLKLRGVPKAEIRA 109 Query: 126 RAMDLLSYMDMSQYANRRSSDISGGEQQRVAICRAIANKPLIILADEPTGNLDLKTAQQV 185 R +LL + + NR ++SGG+QQRVA+ RA+A +P ++L DEP LD K +++ Sbjct: 110 RVRELLELVGLEGLLNRYPHELSGGQQQRVALARALAREPSLLLLDEPLSALDAKLREEL 169 Query: 186 FSILKYLVVRSGLAALIATHNHDLASQM-DRQITIRDGMIA 225 LK L G+ + TH+ + A + DR + +G I Sbjct: 170 REELKELQRELGITTIYVTHDQEEALALADRIAVMNEGRIV 210 >gnl|CDD|31313 COG1116, TauB, ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]. Length = 248 Score = 149 bits (378), Expect = 6e-37 Identities = 70/216 (32%), Positives = 118/216 (54%), Gaps = 13/216 (6%) Query: 4 AEVLLLQNVKHSYRQVGKPFPVLENVHLSLKKGEIVALVSPSGTGKSTILHIAGLLEVPD 63 +L ++ V S+ V VLE+++LS++KGE VA++ PSG GKST+L + LE P Sbjct: 1 MALLEIEGVSKSFGGV----EVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKPT 56 Query: 64 QGNVIIANQLCNKLSDDKKSFLRCSKIGFVYQEHRLLMDFSVIENIIFPQIIAGINHKTA 123 G V++ + D IG+V+QE LL +V++N+ + G + A Sbjct: 57 SGEVLLDGRPVTGPGPD---------IGYVFQEDALLPWLTVLDNVALGLELRGKSKAEA 107 Query: 124 YQRAMDLLSYMDMSQYANRRSSDISGGEQQRVAICRAIANKPLIILADEPTGNLDLKTAQ 183 +RA +LL + ++ + ++ +SGG +QRVAI RA+A +P ++L DEP G LD T + Sbjct: 108 RERAKELLELVGLAGFEDKYPHQLSGGMRQRVAIARALATRPKLLLLDEPFGALDALTRE 167 Query: 184 QVFSILKYLVVRSGLAALIATHNHDLASQMDRQITI 219 ++ L L + L+ TH+ D A + ++ + Sbjct: 168 ELQDELLRLWEETRKTVLLVTHDVDEAVYLADRVVV 203 >gnl|CDD|72984 cd03225, ABC_cobalt_CbiO_domain1, Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.. Length = 211 Score = 146 bits (370), Expect = 6e-36 Identities = 71/218 (32%), Positives = 113/218 (51%), Gaps = 13/218 (5%) Query: 9 LQNVKHSYRQVGKPFPVLENVHLSLKKGEIVALVSPSGTGKSTIL-HIAGLLEVPDQGNV 67 L+N+ SY +P L+++ L++KKGE V +V P+G+GKST+L + GLL P G V Sbjct: 2 LKNLSFSYPDGARP--ALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLG-PTSGEV 58 Query: 68 IIANQLCNKLSDDKKSFLRCSKIGFVYQ--EHRLLMDFSVIENIIFPQIIAGINHKTAYQ 125 ++ + KLS + K+G V+Q + + +V E + F G+ + + Sbjct: 59 LVDGKDLTKLSLKELR----RKVGLVFQNPDDQFFGP-TVEEEVAFGLENLGLPEEEIEE 113 Query: 126 RAMDLLSYMDMSQYANRRSSDISGGEQQRVAICRAIANKPLIILADEPTGNLDLKTAQQV 185 R + L + + +R +SGG++QRVAI +A P I+L DEPT LD +++ Sbjct: 114 RVEEALELVGLEGLRDRSPFTLSGGQKQRVAIAGVLAMDPDILLLDEPTAGLDPAGRREL 173 Query: 186 FSILKYLVVRSGLAALIATHN-HDLASQMDRQITIRDG 222 +LK L G +I TH+ L DR I + DG Sbjct: 174 LELLKKL-KAEGKTIIIVTHDLDLLLELADRVIVLEDG 210 >gnl|CDD|31326 COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms]. Length = 293 Score = 145 bits (367), Expect = 1e-35 Identities = 68/222 (30%), Positives = 124/222 (55%), Gaps = 11/222 (4%) Query: 5 EVLLLQNVKHSYRQVGKPFPVLENVHLSLKKGEIVALVSPSGTGKSTILH-IAGLLEVPD 63 EV+ ++N+ Y G L+ V ++ GEI L+ P+G GK+T+L +AGLL+ P Sbjct: 3 EVIEVRNLTKKY---GGDKTALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLK-PT 58 Query: 64 QGNVIIANQLCNKLSDDKKSFLRCSKIGFVYQEHRLLMDFSVIENIIFPQIIAGINHKTA 123 G +++ + + R +IG+V QE L + +V EN+ F + G++ + A Sbjct: 59 SGEILVLGY---DVVKEPAKVRR--RIGYVPQEPSLYPELTVRENLEFFARLYGLSKEEA 113 Query: 124 YQRAMDLLSYMDMSQYANRRSSDISGGEQQRVAICRAIANKPLIILADEPTGNLDLKTAQ 183 +R +LL + AN++ +SGG +QR++I A+ + P +++ DEPT LD ++ + Sbjct: 114 EERIEELLELFGLEDKANKKVRTLSGGMKQRLSIALALLHDPELLILDEPTSGLDPESRR 173 Query: 184 QVFSILKYLVVRSGLAALIATHNHDLASQM-DRQITIRDGMI 224 +++ +L+ L G+ L++TH + A ++ DR I + DG I Sbjct: 174 EIWELLRELAKEGGVTILLSTHILEEAEELCDRVIILNDGKI 215 >gnl|CDD|33631 COG3839, MalK, ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]. Length = 338 Score = 144 bits (364), Expect = 2e-35 Identities = 73/217 (33%), Positives = 113/217 (52%), Gaps = 12/217 (5%) Query: 7 LLLQNVKHSYRQVGKPFPVLENVHLSLKKGEIVALVSPSGTGKSTILH-IAGLLEVPDQG 65 L L+NV+ S+ F VL++V+L ++ GE V L+ PSG GKST+L IAGL E P G Sbjct: 4 LELKNVRKSF----GSFEVLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEE-PTSG 58 Query: 66 NVIIANQLCNKLSDDKKSFLRCSKIGFVYQEHRLLMDFSVIENIIFPQIIAGINHKTAYQ 125 ++I + L +K+ I V+Q + L +V ENI F + G+ + Sbjct: 59 EILIDGRDVTDLPPEKR------GIAMVFQNYALYPHMTVYENIAFGLKLRGVPKAEIDK 112 Query: 126 RAMDLLSYMDMSQYANRRSSDISGGEQQRVAICRAIANKPLIILADEPTGNLDLKTAQQV 185 R ++ + + NR+ +SGG++QRVA+ RA+ KP + L DEP NLD K + Sbjct: 113 RVKEVAKLLGLEHLLNRKPLQLSGGQRQRVALARALVRKPKVFLLDEPLSNLDAKLRVLM 172 Query: 186 FSILKYLVVRSGLAALIATHNHDLASQMDRQITIRDG 222 S +K L R G + TH+ A + +I + + Sbjct: 173 RSEIKKLHERLGTTTIYVTHDQVEAMTLADRIVVMND 209 >gnl|CDD|73016 cd03257, ABC_NikE_OppD_transporters, The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.. Length = 228 Score = 143 bits (362), Expect = 4e-35 Identities = 72/225 (32%), Positives = 116/225 (51%), Gaps = 7/225 (3%) Query: 6 VLLLQNVKHSYRQVGKPFPVLENVHLSLKKGEIVALVSPSGTGKSTILHIAGLLEVPDQG 65 +L ++N+ S+ G L++V S+KKGE + LV SG+GKST+ L P G Sbjct: 1 LLEVKNLSVSFPTGGGSVKALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLKPTSG 60 Query: 66 NVIIANQLCNKLSDDKKSFLRCSKIGFVYQEHRLLMD--FSVIENIIFPQIIAGINHKTA 123 ++I + KLS + R +I V+Q+ ++ ++ E I P I G K Sbjct: 61 SIIFDGKDLLKLSRRLRKIRR-KEIQMVFQDPMSSLNPRMTIGEQIAEPLRIHGKLSKKE 119 Query: 124 YQRAMDLLSYMDM---SQYANRRSSDISGGEQQRVAICRAIANKPLIILADEPTGNLDLK 180 ++ LL + + + NR ++SGG++QRVAI RA+A P +++ADEPT LD+ Sbjct: 120 ARKEAVLLLLVGVGLPEEVLNRYPHELSGGQRQRVAIARALALNPKLLIADEPTSALDVS 179 Query: 181 TAQQVFSILKYLVVRSGLAALIATHNHDLASQM-DRQITIRDGMI 224 Q+ +LK L GL L TH+ + +++ DR + G I Sbjct: 180 VQAQILDLLKKLQEELGLTLLFITHDLGVVAKIADRVAVMYAGKI 224 >gnl|CDD|31320 COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]. Length = 539 Score = 140 bits (355), Expect = 3e-34 Identities = 68/232 (29%), Positives = 117/232 (50%), Gaps = 10/232 (4%) Query: 3 SAEVLLLQNVKHSYRQVGKPFPVLENVHLSLKKGEIVALVSPSGTGKSTILH-IAGLLE- 60 + +L ++N+ + G P + +V ++ GEI+ +V SG+GKST+ + GLL Sbjct: 2 MSPLLEVENLTVEFATDGGRVPAVRDVSFEVEPGEILGIVGESGSGKSTLALALMGLLPE 61 Query: 61 --VPDQGNVIIANQLCNKLSDDKKSFLRCSKIGFVYQEH-RLLMDFSVIENIIF--PQII 115 G VI+ + LS+ + LR +I ++Q+ L I + I ++ Sbjct: 62 GGRITSGEVILDGRDLLGLSEREMRKLRGKRIAMIFQDPMTSLNPVMTIGDQIREALRLH 121 Query: 116 AGINHKTAYQRAMDLLSYMDMSQYANRRS--SDISGGEQQRVAICRAIANKPLIILADEP 173 + A +RA++LL + + R +SGG +QRV I A+A KP +++ADEP Sbjct: 122 GKGSRAEARKRAVELLEQVGLPDPERRDRYPHQLSGGMRQRVMIAMALALKPKLLIADEP 181 Query: 174 TGNLDLKTAQQVFSILKYLVVRSGLAALIATHNHDLASQM-DRQITIRDGMI 224 T LD+ T Q+ +LK L G+A L TH+ + +++ DR + + G I Sbjct: 182 TTALDVTTQAQILDLLKDLQRELGMAVLFITHDLGVVAELADRVVVMYKGEI 233 Score = 134 bits (340), Expect = 1e-32 Identities = 61/215 (28%), Positives = 106/215 (49%), Gaps = 3/215 (1%) Query: 13 KHSYRQVGKPFPVLENVHLSLKKGEIVALVSPSGTGKSTILHIAGLLEVPDQGNVIIANQ 72 K + + +++V L++GE + LV SG+GKST+ I L P G++I Q Sbjct: 294 KGLFVRERGEVKAVDDVSFDLREGETLGLVGESGSGKSTLARILAGLLPPSSGSIIFDGQ 353 Query: 73 LCNKLSDDKKSFLRCSKIGFVYQEHRLLMDFSVIENIIFP-QIIAGINHKTAYQRAMDLL 131 + + + R ++ F L +V + + P +I G + R +LL Sbjct: 354 DLDLTGGELRRLRRRIQMVFQDPYSSLNPRMTVGDILAEPLRIHGGGSGAERRARVAELL 413 Query: 132 SYMDMS-QYANRRSSDISGGEQQRVAICRAIANKPLIILADEPTGNLDLKTAQQVFSILK 190 + + ++ +R ++SGG++QRVAI RA+A +P +++ DEP LD+ QV ++LK Sbjct: 414 ELVGLPPEFLDRYPHELSGGQRQRVAIARALALEPKLLILDEPVSALDVSVQAQVLNLLK 473 Query: 191 YLVVRSGLAALIATHNHDLASQM-DRQITIRDGMI 224 L GL L +H+ + + DR + DG I Sbjct: 474 DLQEELGLTYLFISHDLAVVRYIADRVAVMYDGRI 508 >gnl|CDD|73059 cd03300, ABC_PotA_N, PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.. Length = 232 Score = 139 bits (351), Expect = 7e-34 Identities = 73/217 (33%), Positives = 110/217 (50%), Gaps = 11/217 (5%) Query: 9 LQNVKHSYRQVGKPFPVLENVHLSLKKGEIVALVSPSGTGKSTILHIAGLLEVPDQGNVI 68 L+NV Y F L+ V L +K+GE L+ PSG GK+T+L + E P G ++ Sbjct: 3 LENVSKFYGG----FVALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETPTSGEIL 58 Query: 69 IANQLCNKLSDDKKSFLRCSKIGFVYQEHRLLMDFSVIENIIFPQIIAGINHKTAYQRAM 128 + + L K+ + V+Q + L +V ENI F + + +R Sbjct: 59 LDGKDITNLPPHKR------PVNTVFQNYALFPHLTVFENIAFGLRLKKLPKAEIKERVA 112 Query: 129 DLLSYMDMSQYANRRSSDISGGEQQRVAICRAIANKPLIILADEPTGNLDLKTAQQVFSI 188 + L + + YANR+ S +SGG+QQRVAI RA+ N+P ++L DEP G LDLK + + Sbjct: 113 EALDLVQLEGYANRKPSQLSGGQQQRVAIARALVNEPKVLLLDEPLGALDLKLRKDMQLE 172 Query: 189 LKYLVVRSGLAALIATHNHDLASQM-DRQITIRDGMI 224 LK L G+ + TH+ + A M DR + G I Sbjct: 173 LKRLQKELGITFVFVTHDQEEALTMSDRIAVMNKGKI 209 >gnl|CDD|72988 cd03229, ABC_Class3, This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.. Length = 178 Score = 136 bits (345), Expect = 4e-33 Identities = 76/217 (35%), Positives = 114/217 (52%), Gaps = 41/217 (18%) Query: 7 LLLQNVKHSYRQVGKPFPVLENVHLSLKKGEIVALVSPSGTGKSTILHIAGLLEVPDQGN 66 L L+NV Y Q VL +V L+++ GEIVAL+ PSG+GKST+L LE PD G+ Sbjct: 1 LELKNVSKRYGQK----TVLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEEPDSGS 56 Query: 67 VIIANQLCNKLSDDKKSFLRCSKIGFVYQEHRLLMDFSVIENIIFPQIIAGINHKTAYQR 126 ++I + L D+ R +IG V+Q+ L +V+ENI Sbjct: 57 ILIDGEDLTDLEDELPPLRR--RIGMVFQDFALFPHLTVLENIALG-------------- 100 Query: 127 AMDLLSYMDMSQYANRRSSDISGGEQQRVAICRAIANKPLIILADEPTGNLDLKTAQQVF 186 +SGG+QQRVA+ RA+A P ++L DEPT LD T ++V Sbjct: 101 --------------------LSGGQQQRVALARALAMDPDVLLLDEPTSALDPITRREVR 140 Query: 187 SILKYLVVRSGLAALIATHNHDLASQM-DRQITIRDG 222 ++LK L + G+ ++ TH+ D A+++ DR + +RDG Sbjct: 141 ALLKSLQAQLGITVVLVTHDLDEAARLADRVVVLRDG 177 >gnl|CDD|31315 COG1118, CysA, ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]. Length = 345 Score = 133 bits (337), Expect = 3e-32 Identities = 74/220 (33%), Positives = 120/220 (54%), Gaps = 10/220 (4%) Query: 9 LQNVKHSYRQVGKPFPVLENVHLSLKKGEIVALVSPSGTGKSTILHIAGLLEVPDQGNVI 68 + NVK + F L+++ L +K GE+VAL+ PSG GKST+L I LE PD G + Sbjct: 5 INNVKKRFGA----FGALDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLETPDAGRIR 60 Query: 69 IANQLCNKLSDDKKSFLRCSKIGFVYQEHRLLMDFSVIENIIFPQIIAGI--NHKTAYQR 126 + ++ L D +R K+GFV+Q + L +V +NI F + + R Sbjct: 61 LNGRV---LFDVSNLAVRDRKVGFVFQHYALFPHMTVADNIAFGLKVRKERPSEAEIRAR 117 Query: 127 AMDLLSYMDMSQYANRRSSDISGGEQQRVAICRAIANKPLIILADEPTGNLDLKTAQQVF 186 +LL + + A+R + +SGG++QRVA+ RA+A +P ++L DEP G LD K +++ Sbjct: 118 VEELLRLVQLEGLADRYPAQLSGGQRQRVALARALAVEPKVLLLDEPFGALDAKVRKELR 177 Query: 187 SILKYLVVRSGLAALIATHNHDLASQM-DRQITIRDGMIA 225 L+ L R G+ + TH+ + A ++ DR + + G I Sbjct: 178 RWLRKLHDRLGVTTVFVTHDQEEALELADRVVVLNQGRIE 217 >gnl|CDD|31317 COG1120, FepC, ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]. Length = 258 Score = 133 bits (337), Expect = 3e-32 Identities = 70/225 (31%), Positives = 121/225 (53%), Gaps = 15/225 (6%) Query: 6 VLLLQNVKHSYRQVGKPFPVLENVHLSLKKGEIVALVSPSGTGKSTILH-IAGLLEVPDQ 64 +L ++N+ Y P+L+++ S+ KGEI ++ P+G+GKST+L +AGLL+ P Sbjct: 2 MLEVENLSFGYGGK----PILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLK-PKS 56 Query: 65 GNVIIANQLCNKLSDDKKSFLRCSKIGFVYQEHRLLMDFSVIENII---FP-QIIAGINH 120 G V++ + LS K + K+ +V Q +V E ++ +P + G Sbjct: 57 GEVLLDGKDIASLS--PKELAK--KLAYVPQSPSAPFGLTVYELVLLGRYPHLGLFGRPS 112 Query: 121 KTAYQRAMDLLSYMDMSQYANRRSSDISGGEQQRVAICRAIANKPLIILADEPTGNLDLK 180 K + + L + + A+R ++SGGE+QRV I RA+A + I+L DEPT +LD+ Sbjct: 113 KEDEEIVEEALELLGLEHLADRPVDELSGGERQRVLIARALAQETPILLLDEPTSHLDIA 172 Query: 181 TAQQVFSILKYLVVRSGLAALIATHNHDLASQM-DRQITIRDGMI 224 +V +L+ L GL ++ H+ +LA++ D I ++DG I Sbjct: 173 HQIEVLELLRDLNREKGLTVVMVLHDLNLAARYADHLILLKDGKI 217 >gnl|CDD|33907 COG4161, ArtP, ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism]. Length = 242 Score = 133 bits (336), Expect = 4e-32 Identities = 70/193 (36%), Positives = 107/193 (55%), Gaps = 6/193 (3%) Query: 25 VLENVHLSLKKGEIVALVSPSGTGKSTILHIAGLLEVPDQGNVIIANQ---LCNKLSDDK 81 L ++ L +GE + L+ PSG GKS++L + LLE+P G + IA SD Sbjct: 17 ALFDITLDCPEGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTPSDKA 76 Query: 82 KSFLRCSKIGFVYQEHRLLMDFSVIENII-FPQIIAGINHKTAYQRAMDLLSYMDMSQYA 140 LR +G V+Q++ L +V EN+I P + G++ A RA LL + + YA Sbjct: 77 IRDLR-RNVGMVFQQYNLWPHLTVQENLIEAPCRVLGLSKDQALARAEKLLKRLRLKPYA 135 Query: 141 NRRSSDISGGEQQRVAICRAIANKPLIILADEPTGNLDLKTAQQVFSILKYLVVRSGLAA 200 +R +SGG+QQRVAI RA+ +P ++L DEPT LD + Q+ SI+K L +G+ Sbjct: 136 DRYPLHLSGGQQQRVAIARALMMEPQVLLFDEPTAALDPEITAQIVSIIKEL-AETGITQ 194 Query: 201 LIATHNHDLASQM 213 +I TH ++A + Sbjct: 195 VIVTHEVEVARKT 207 >gnl|CDD|31319 COG1122, CbiO, ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]. Length = 235 Score = 131 bits (331), Expect = 1e-31 Identities = 65/222 (29%), Positives = 113/222 (50%), Gaps = 10/222 (4%) Query: 6 VLLLQNVKHSYRQVGKPFPVLENVHLSLKKGEIVALVSPSGTGKSTILHIAGLLEVPDQG 65 ++ +N+ Y L++V L ++KGE V L+ P+G+GKST+L + L P G Sbjct: 3 MIEAENLSFRY---PGRKAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKPTSG 59 Query: 66 NVIIANQLCNKLSDDKKSFLRCSKIGFVYQ--EHRLLMDFSVIENIIFPQIIAGINHKTA 123 V++ + L + K+G V+Q + +L +V + + F G+ + Sbjct: 60 EVLV-DGLDTSSEKSLLELRQ--KVGLVFQNPDDQLFGP-TVEDEVAFGLENLGLPREEI 115 Query: 124 YQRAMDLLSYMDMSQYANRRSSDISGGEQQRVAICRAIANKPLIILADEPTGNLDLKTAQ 183 +R + L + + + +R ++SGG++QRVAI +A P I+L DEPT LD K + Sbjct: 116 EERVAEALELVGLEELLDRPPFNLSGGQKQRVAIAGVLAMGPEILLLDEPTAGLDPKGRR 175 Query: 184 QVFSILKYLVVRSGLAALIATHNHDLASQ-MDRQITIRDGMI 224 ++ +LK L G +I TH+ +L + DR + + DG I Sbjct: 176 ELLELLKKLKEEGGKTIIIVTHDLELVLEYADRVVVLDDGKI 217 >gnl|CDD|31325 COG1129, MglA, ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]. Length = 500 Score = 129 bits (326), Expect = 7e-31 Identities = 63/230 (27%), Positives = 115/230 (50%), Gaps = 13/230 (5%) Query: 1 MDSAEVLLLQNVKHSYRQVGKPFPVLENVHLSLKKGEIVALVSPSGTGKSTILHIAGLLE 60 M + +L L+ + S+ V L+ V L+++ GE+ AL+ +G GKST++ I + Sbjct: 3 MSTPPLLELRGISKSFGGV----KALDGVSLTVRPGEVHALLGENGAGKSTLMKILSGVY 58 Query: 61 VPDQGNVIIANQLCNKLSDDKKSFLRCSKIGFVYQEHRLLMDFSVIENIIFPQIIAG--- 117 PD G ++I + S + I V+QE L+ + SV ENI + Sbjct: 59 PPDSGEILIDGKPVAFSSPRDA---LAAGIATVHQELSLVPNLSVAENIFLGREPTRRFG 115 Query: 118 -INHKTAYQRAMDLLSYMDMSQYANRRSSDISGGEQQRVAICRAIANKPLIILADEPTGN 176 I+ K +RA +LL+ + + + D+S ++Q V I RA++ +++ DEPT Sbjct: 116 LIDRKAMRRRARELLARLGLDIDPDTLVGDLSIAQRQMVEIARALSFDARVLILDEPTAA 175 Query: 177 LDLKTAQQVFSILKYLVVRSGLAALIATHNHDLASQM-DRQITIRDGMIA 225 L +K +++F +++ L G+A + +H D ++ DR +RDG + Sbjct: 176 LTVKETERLFDLIRRL-KAQGVAIIYISHRLDEVFEIADRITVLRDGRVV 224 Score = 76.7 bits (189), Expect = 5e-15 Identities = 42/213 (19%), Positives = 89/213 (41%), Gaps = 18/213 (8%) Query: 25 VLENVHLSLKKGEIVALVSPSGTGKSTILHIAGLLEVPDQGNVIIANQLCNKLSDDKKSF 84 + +V +++ GEI+ + G G++ + G +++ + +S Sbjct: 274 KVRDVSFTVRAGEILGIAGLVGAGRTELARALFGARPASSGEILLDGK-----PVRIRSP 328 Query: 85 LRCSKIGFVY-----QEHRLLMDFSVIENIIFPQIIA-----GINHKTAYQRAMDLLSYM 134 K G Y + L++D S+ ENI + I+ + A + + Sbjct: 329 RDAIKAGIAYVPEDRKSEGLVLDMSIAENITLASLRRFSRRGLIDRRKERALAERYIRRL 388 Query: 135 DMSQY-ANRRSSDISGGEQQRVAICRAIANKPLIILADEPTGNLDLKTAQQVFSILKYLV 193 + + +SGG QQ+V + R +A P +++ DEPT +D+ +++ +++ L Sbjct: 389 RIKTPSPEQPIGTLSGGNQQKVVLARWLATDPKVLILDEPTRGIDVGAKAEIYRLIREL- 447 Query: 194 VRSGLAALIATHNHDLASQM-DRQITIRDGMIA 225 G A L+ + + DR + +R+G I Sbjct: 448 AAEGKAILMISSELPELLGLSDRILVMREGRIV 480 >gnl|CDD|73055 cd03296, ABC_CysA_sulfate_importer, Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.. Length = 239 Score = 128 bits (323), Expect = 1e-30 Identities = 62/207 (29%), Positives = 108/207 (52%), Gaps = 11/207 (5%) Query: 23 FPVLENVHLSLKKGEIVALVSPSGTGKSTILHIAGLLEVPDQGNVIIANQLCNKLSDDKK 82 F L++V L + GE+VAL+ PSG+GK+T+L + LE PD G ++ + D Sbjct: 15 FVALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERPDSGTILFGGE------DATD 68 Query: 83 SFLRCSKIGFVYQEHRLLMDFSVIENIIF----PQIIAGINHKTAYQRAMDLLSYMDMSQ 138 ++ +GFV+Q + L +V +N+ F + +LL + + Sbjct: 69 VPVQERNVGFVFQHYALFRHMTVFDNVAFGLRVKPRSERPPEAEIRAKVHELLKLVQLDW 128 Query: 139 YANRRSSDISGGEQQRVAICRAIANKPLIILADEPTGNLDLKTAQQVFSILKYLVVRSGL 198 A+R + +SGG++QRVA+ RA+A +P ++L DEP G LD K +++ L+ L + Sbjct: 129 LADRYPAQLSGGQRQRVALARALAVEPKVLLLDEPFGALDAKVRKELRRWLRRLHDELHV 188 Query: 199 AALIATHNHDLASQM-DRQITIRDGMI 224 + TH+ + A ++ DR + + G I Sbjct: 189 TTVFVTHDQEEALEVADRVVVMNKGRI 215 >gnl|CDD|30793 COG0444, DppD, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]. Length = 316 Score = 126 bits (319), Expect = 4e-30 Identities = 67/232 (28%), Positives = 118/232 (50%), Gaps = 13/232 (5%) Query: 6 VLLLQNVKHSYRQVGKPFPVLENVHLSLKKGEIVALVSPSGTGKSTILH-IAGLLEVPDQ 64 +L ++N+ S+ ++ V LKKGEI+ +V SG+GKS + I GLL P+ Sbjct: 1 LLEVKNLSVSFPTDAGVVKAVDGVSFELKKGEILGIVGESGSGKSVLAKAIMGLLPKPNA 60 Query: 65 ----GNVIIANQLCNKLSDDKKSFLRCSKIGFVYQEHRLLMD-FSVIENIIFPQIIA--- 116 G ++ + LS+ + +R +I ++Q+ ++ I + I + Sbjct: 61 RIVGGEILFDGKDLLSLSEKELRKIRGKEIAMIFQDPMTSLNPVMTIGDQIAEVLRLHGK 120 Query: 117 GINHKTAYQRAMDLLSYMDMSQYANRRSS---DISGGEQQRVAICRAIANKPLIILADEP 173 G++ K A +RA++LL + + R S ++SGG +QRV I A+A P +++ADEP Sbjct: 121 GLSKKEAKERAIELLELVGIPDPERRLKSYPHELSGGMRQRVMIAMALALNPKLLIADEP 180 Query: 174 TGNLDLKTAQQVFSILKYLVVRSGLAALIATHNHDLASQM-DRQITIRDGMI 224 T LD+ Q+ +LK L G A ++ TH+ + +++ DR + G I Sbjct: 181 TTALDVTVQAQILDLLKELQREKGTALILITHDLGVVAEIADRVAVMYAGRI 232 >gnl|CDD|73060 cd03301, ABC_MalK_N, The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.. Length = 213 Score = 124 bits (313), Expect = 2e-29 Identities = 69/220 (31%), Positives = 106/220 (48%), Gaps = 13/220 (5%) Query: 7 LLLQNVKHSYRQVGKPFPVLENVHLSLKKGEIVALVSPSGTGKSTILH-IAGLLEVPDQG 65 + L+NV + L++++L + GE V L+ PSG GK+T L IAGL E P G Sbjct: 1 VELENVTKRF----GNVTALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGL-EEPTSG 55 Query: 66 NVIIANQLCNKLSDDKKSFLRCSKIGFVYQEHRLLMDFSVIENIIFPQIIAGINHKTAYQ 125 + I + L + I V+Q + L +V +NI F + + + Sbjct: 56 RIYIGGRDVTDLPPKDRD------IAMVFQNYALYPHMTVYDNIAFGLKLRKVPKDEIDE 109 Query: 126 RAMDLLSYMDMSQYANRRSSDISGGEQQRVAICRAIANKPLIILADEPTGNLDLKTAQQV 185 R ++ + + +R+ +SGG++QRVA+ RAI +P + L DEP NLD K Q+ Sbjct: 110 RVREVAELLQIEHLLDRKPKQLSGGQRQRVALGRAIVREPKVFLMDEPLSNLDAKLRVQM 169 Query: 186 FSILKYLVVRSGLAALIATHNHDLASQM-DRQITIRDGMI 224 + LK L R G + TH+ A M DR + DG I Sbjct: 170 RAELKRLQQRLGTTTIYVTHDQVEAMTMADRIAVMNDGQI 209 >gnl|CDD|73020 cd03261, ABC_Org_Solvent_Resistant, ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.. Length = 235 Score = 124 bits (312), Expect = 2e-29 Identities = 68/209 (32%), Positives = 115/209 (55%), Gaps = 15/209 (7%) Query: 24 PVLENVHLSLKKGEIVALVSPSGTGKSTIL-HIAGLLEVPDQGNVIIANQLCNKLSDDKK 82 VL+ V L +++GEI+A++ PSG+GKST+L I GLL PD G V+I + + LS+ + Sbjct: 14 TVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLR-PDSGEVLIDGEDISGLSEAEL 72 Query: 83 SFLRCSKIGFVYQEHRLLMDFSVIENIIFPQIIAGINHKTAY------QRAMDLLSYMDM 136 LR ++G ++Q L +V EN+ FP + T + ++ L + + Sbjct: 73 YRLRR-RMGMLFQSGALFDSLTVFENVAFP-----LREHTRLSEEEIREIVLEKLEAVGL 126 Query: 137 SQYANRRSSDISGGEQQRVAICRAIANKPLIILADEPTGNLDLKTAQQVFSILKYLVVRS 196 + +++SGG ++RVA+ RA+A P ++L DEPT LD + + +++ L Sbjct: 127 RGAEDLYPAELSGGMKKRVALARALALDPELLLYDEPTAGLDPIASGVIDDLIRSLKKEL 186 Query: 197 GLAALIATHNHDLASQM-DRQITIRDGMI 224 GL +++ TH+ D A + DR + DG I Sbjct: 187 GLTSIMVTHDLDTAFAIADRIAVLYDGKI 215 >gnl|CDD|31321 COG1124, DppF, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]. Length = 252 Score = 124 bits (312), Expect = 3e-29 Identities = 64/225 (28%), Positives = 115/225 (51%), Gaps = 9/225 (4%) Query: 4 AEVLLLQNVKHSYRQVGKPFPVLENVHLSLKKGEIVALVSPSGTGKSTILHIAGLLEVPD 63 +L ++N+ Y F L NV L +++GE + +V SG+GKST+ + LE P Sbjct: 1 MTLLSVRNLSIVYGGGKFAFHALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEKPS 60 Query: 64 QGNVIIANQLCNKLSDDKKSFLRCSKIGFVYQE-HRLLMDFSVIENIIF-PQIIAGINHK 121 G++++ + L+ K++ + V+Q+ + L + I+ P G+ Sbjct: 61 SGSILLDGK---PLAPKKRAKAFYRPVQMVFQDPYSSLNPRRTVGRILSEPLRPHGL--S 115 Query: 122 TAYQRAMDLLSYMDMSQ-YANRRSSDISGGEQQRVAICRAIANKPLIILADEPTGNLDLK 180 + QR +LL + + + +RR ++SGG++QR+AI RA+ +P +++ DEPT LD+ Sbjct: 116 KSQQRIAELLDQVGLPPSFLDRRPHELSGGQRQRIAIARALIPEPKLLILDEPTSALDVS 175 Query: 181 TAQQVFSILKYLVVRSGLAALIATHNHDLASQM-DRQITIRDGMI 224 Q+ ++L L GL L +H+ L M DR + +G I Sbjct: 176 VQAQILNLLLELKKERGLTYLFISHDLALVEHMCDRIAVMDNGQI 220 >gnl|CDD|31322 COG1125, OpuBA, ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]. Length = 309 Score = 122 bits (308), Expect = 6e-29 Identities = 74/219 (33%), Positives = 118/219 (53%), Gaps = 11/219 (5%) Query: 9 LQNVKHSYRQVGKPFPVLENVHLSLKKGEIVALVSPSGTGKSTILHIAGLLEVPDQGNVI 68 +NV Y +++V+L++++GE + L+ PSG+GK+T L + L P G ++ Sbjct: 4 FENVSKRY----GNKKAVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEPTSGEIL 59 Query: 69 IANQLCNKLSDDKKSFLRCSKIGFVYQEHRLLMDFSVIENIIFPQIIAGINHKTAYQRAM 128 I + +SD LR KIG+V Q+ L +V ENI + G + + +RA Sbjct: 60 IDGE---DISDLDPVELR-RKIGYVIQQIGLFPHLTVAENIATVPKLLGWDKERIKKRAD 115 Query: 129 DLLSYMDM--SQYANRRSSDISGGEQQRVAICRAIANKPLIILADEPTGNLDLKTAQQVF 186 +LL + + S+YA+R ++SGG+QQRV + RA+A P I+L DEP G LD T +Q+ Sbjct: 116 ELLDLVGLDPSEYADRYPHELSGGQQQRVGVARALAADPPILLMDEPFGALDPITRKQLQ 175 Query: 187 SILKYLVVRSGLAALIATHNHDLASQM-DRQITIRDGMI 224 +K L G + TH+ D A ++ DR + G I Sbjct: 176 EEIKELQKELGKTIVFVTHDIDEALKLADRIAVMDAGEI 214 >gnl|CDD|72977 cd03218, ABC_YhbG, The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.. Length = 232 Score = 122 bits (308), Expect = 7e-29 Identities = 72/219 (32%), Positives = 113/219 (51%), Gaps = 9/219 (4%) Query: 7 LLLQNVKHSYRQVGKPFPVLENVHLSLKKGEIVALVSPSGTGKSTILHIAGLLEVPDQGN 66 L +N+ Y V+ V LS+K+GEIV L+ P+G GK+T ++ L PD G Sbjct: 1 LRAENLSKRY----GKRKVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPDSGK 56 Query: 67 VIIANQLCNKLSDDKKSFLRCSKIGFVYQEHRLLMDFSVIENIIFPQIIAGINHKTAYQR 126 +++ Q KL K++ L IG++ QE + +V ENI+ I G++ K ++ Sbjct: 57 ILLDGQDITKLPMHKRARL---GIGYLPQEASIFRKLTVEENILAVLEIRGLSKKEREEK 113 Query: 127 AMDLLSYMDMSQYANRRSSDISGGEQQRVAICRAIANKPLIILADEPTGNLDLKTAQQVF 186 +LL ++ ++S +SGGE++RV I RA+A P +L DEP +D Q + Sbjct: 114 LEELLEEFHITHLRKSKASSLSGGERRRVEIARALATNPKFLLLDEPFAGVDPIAVQDIQ 173 Query: 187 SILKYLVVRSGLAALIATHN-HDLASQMDRQITIRDGMI 224 I+K L R G+ LI HN + S DR I +G + Sbjct: 174 KIIKILKDR-GIGVLITDHNVRETLSITDRAYIIYEGKV 211 >gnl|CDD|31324 COG1127, Ttg2A, ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]. Length = 263 Score = 121 bits (305), Expect = 1e-28 Identities = 64/207 (30%), Positives = 112/207 (54%), Gaps = 12/207 (5%) Query: 25 VLENVHLSLKKGEIVALVSPSGTGKSTILHIAGLLEVPDQGNVIIANQLCNKLSDDKKSF 84 +L+ V L + +GEI+A++ SG+GKST+L + L PD+G ++I + +LS+++ Sbjct: 23 ILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLRPDKGEILIDGEDIPQLSEEELYE 82 Query: 85 LRCSKIGFVYQEHRLLMDFSVIENIIFPQIIAGINHKTAYQRAMDLLSYMDMSQ------ 138 +R ++G ++Q+ L +V EN+ FP H + + L M + Sbjct: 83 IR-KRMGVLFQQGALFSSLTVFENVAFPL----REHTKLPESLIRELVLMKLELVGLRGA 137 Query: 139 YANRRSSDISGGEQQRVAICRAIANKPLIILADEPTGNLDLKTAQQVFSILKYLVVRSGL 198 A+ S++SGG ++RVA+ RAIA P ++ DEPT LD +A + +++ L GL Sbjct: 138 AADLYPSELSGGMRKRVALARAIALDPELLFLDEPTSGLDPISAGVIDELIRELNDALGL 197 Query: 199 AALIATHNHD-LASQMDRQITIRDGMI 224 ++ TH+ D L + DR + DG + Sbjct: 198 TVIMVTHDLDSLLTIADRVAVLADGKV 224 >gnl|CDD|34177 COG4525, TauB, ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]. Length = 259 Score = 120 bits (302), Expect = 4e-28 Identities = 62/218 (28%), Positives = 112/218 (51%), Gaps = 11/218 (5%) Query: 5 EVLLLQNVKHSYRQVGKPFPVLENVHLSLKKGEIVALVSPSGTGKSTILHIAGLLEVPDQ 64 +L + ++ SY GKP LE+V L++ GE+V ++ PSG GK+T+L++ P + Sbjct: 2 CMLNVSHLSLSYE--GKPRSALEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGFVTPSR 59 Query: 65 GNVIIANQLCNKLSDDKKSFLRCSKIGFVYQEHRLLMDFSVIENIIFPQIIAGINHKTAY 124 G++ + + ++ G V+Q LL +VI+N+ F + GI Sbjct: 60 GSIQLNGRRIEGPGAER---------GVVFQNEALLPWLNVIDNVAFGLQLRGIEKAQRR 110 Query: 125 QRAMDLLSYMDMSQYANRRSSDISGGEQQRVAICRAIANKPLIILADEPTGNLDLKTAQQ 184 + A +L+ + + ++ +SGG +QRV I RA+A +P ++L DEP G LD T +Q Sbjct: 111 EIAHQMLALVGLEGAEHKYIWQLSGGMRQRVGIARALAVEPQLLLLDEPFGALDALTREQ 170 Query: 185 VFSILKYLVVRSGLAALIATHNHDLASQMDRQITIRDG 222 + +L L +G L+ TH+ + A + ++ + Sbjct: 171 MQELLLDLWQETGKQVLLITHDIEEALFLATRLVVLSP 208 >gnl|CDD|73053 cd03294, ABC_Pro_Gly_Bertaine, This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.. Length = 269 Score = 119 bits (301), Expect = 5e-28 Identities = 64/206 (31%), Positives = 105/206 (50%), Gaps = 3/206 (1%) Query: 21 KPFPVLENVHLSLKKGEIVALVSPSGTGKSTIL-HIAGLLEVPDQGNVIIANQLCNKLSD 79 + +V L +++GEI ++ SG+GKST+L I L+E P G V+I Q +S Sbjct: 35 GQTVGVNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIE-PTSGKVLIDGQDIAAMSR 93 Query: 80 DKKSFLRCSKIGFVYQEHRLLMDFSVIENIIFPQIIAGINHKTAYQRAMDLLSYMDMSQY 139 + LR KI V+Q LL +V+EN+ F + G+ +RA + L + + + Sbjct: 94 KELRELRRKKISMVFQSFALLPHRTVLENVAFGLEVQGVPRAEREERAAEALELVGLEGW 153 Query: 140 ANRRSSDISGGEQQRVAICRAIANKPLIILADEPTGNLDLKTAQQVFSILKYLVVRSGLA 199 ++ ++SGG QQRV + RA+A P I+L DE LD +++ L L Sbjct: 154 EHKYPDELSGGMQQRVGLARALAVDPDILLMDEAFSALDPLIRREMQDELLRLQAELQKT 213 Query: 200 ALIATHNHDLASQM-DRQITIRDGMI 224 + TH+ D A ++ DR ++DG + Sbjct: 214 IVFITHDLDEALRLGDRIAIMKDGRL 239 >gnl|CDD|31318 COG1121, ZnuC, ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]. Length = 254 Score = 119 bits (300), Expect = 7e-28 Identities = 68/229 (29%), Positives = 119/229 (51%), Gaps = 21/229 (9%) Query: 6 VLLLQNVKHSYRQVGKPFPVLENVHLSLKKGEIVALVSPSGTGKSTILH-IAGLLEVPDQ 64 ++ ++N+ SY PVLE++ LS++KGEI AL+ P+G GKST+L I GLL+ P Sbjct: 4 MIEVENLTVSYGNR----PVLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLK-PSS 58 Query: 65 GNVIIANQLCNKLSDDKKSFLRCSKIGFVYQEHRLLMDF--SVIENIIFPQIIA----GI 118 G + I + K + IG+V Q+ + F +V + ++ + Sbjct: 59 GEIKIFGKPVRKRRKRLR-------IGYVPQKSSVDRSFPITVKDVVLLGRYGKKGWFRR 111 Query: 119 NHKTAYQRAMDLLSYMDMSQYANRRSSDISGGEQQRVAICRAIANKPLIILADEPTGNLD 178 +K ++ + L + M +R+ ++SGG++QRV + RA+A P ++L DEP +D Sbjct: 112 LNKKDKEKVDEALERVGMEDLRDRQIGELSGGQKQRVLLARALAQNPDLLLLDEPFTGVD 171 Query: 179 LKTAQQVFSILKYLVVRSGLAALIATHNHDLASQ-MDRQITIRDGMIAD 226 + ++++ +LK L + G L+ TH+ L DR I + +IA Sbjct: 172 VAGQKEIYDLLKEL-RQEGKTVLMVTHDLGLVMAYFDRVICLNRHLIAS 219 >gnl|CDD|73019 cd03260, ABC_PstB_phosphate_transporter, Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).. Length = 227 Score = 118 bits (297), Expect = 2e-27 Identities = 59/206 (28%), Positives = 100/206 (48%), Gaps = 17/206 (8%) Query: 9 LQNVKHSYRQVGKPFPVLENVHLSLKKGEIVALVSPSGTGKSTILHIAGLL-----EVPD 63 L+++ Y L+++ L + KGEI AL+ PSG GKST+L + L PD Sbjct: 3 LRDLNVYY----GDKHALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAPD 58 Query: 64 QGNVIIANQLCNKLSDDKKSFLRCSKIGFVYQEHRLLMDFSVIENIIFPQIIAGI-NHKT 122 +G V++ + L D R ++G V+Q S+ +N+ + + GI + Sbjct: 59 EGEVLLDGKDIYDLDVDVLELRR--RVGMVFQ-KPNPFPGSIYDNVAYGLRLHGIKLKEE 115 Query: 123 AYQRAMDLLSYMDMSQYANRRSS--DISGGEQQRVAICRAIANKPLIILADEPTGNLDLK 180 +R + L + R +SGG+QQR+ + RA+AN+P ++L DEPT LD Sbjct: 116 LDERVEEALRKAALWDEVKDRLHALGLSGGQQQRLCLARALANEPEVLLLDEPTSALDPI 175 Query: 181 TAQQVFSILKYLVVRSGLAALIATHN 206 + ++ ++ L + +I THN Sbjct: 176 STAKIEELIAEL--KKEYTIVIVTHN 199 >gnl|CDD|72973 cd03214, ABC_Iron-Siderophores_B12_Hemin, ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.. Length = 180 Score = 117 bits (294), Expect = 3e-27 Identities = 64/218 (29%), Positives = 110/218 (50%), Gaps = 45/218 (20%) Query: 9 LQNVKHSYRQVGKPFPVLENVHLSLKKGEIVALVSPSGTGKSTILH-IAGLLEVPDQGNV 67 ++N+ Y VL+++ LS++ GEIV ++ P+G GKST+L +AGLL+ P G + Sbjct: 2 VENLSVGYGGR----TVLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLK-PSSGEI 56 Query: 68 IIANQLCNKLSDDKKSFLRCSKIGFVYQEHRLLMDFSVIENIIFPQIIAGINHKTAYQRA 127 ++ + LS + KI +V PQ Sbjct: 57 LLDGKDLASLSPKE----LARKIAYV------------------PQA------------- 81 Query: 128 MDLLSYMDMSQYANRRSSDISGGEQQRVAICRAIANKPLIILADEPTGNLDLKTAQQVFS 187 L + ++ A+R +++SGGE+QRV + RA+A +P I+L DEPT +LD+ ++ Sbjct: 82 ---LELLGLAHLADRPFNELSGGERQRVLLARALAQEPPILLLDEPTSHLDIAHQIELLE 138 Query: 188 ILKYLVVRSGLAALIATHNHDLASQM-DRQITIRDGMI 224 +L+ L G ++ H+ +LA++ DR I ++DG I Sbjct: 139 LLRRLARERGKTVVMVLHDLNLAARYADRVILLKDGRI 176 >gnl|CDD|34233 COG4598, HisP, ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism]. Length = 256 Score = 116 bits (293), Expect = 4e-27 Identities = 61/203 (30%), Positives = 107/203 (52%), Gaps = 11/203 (5%) Query: 25 VLENVHLSLKKGEIVALVSPSGTGKSTILHIAGLLEVPDQGNVIIANQLCNKLSD----- 79 VL+ V L G++++++ SG+GKST L LE P G++ + + D Sbjct: 21 VLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSAGSIRVNGEEIRLKRDKDGQL 80 Query: 80 ---DKKSFLRC-SKIGFVYQEHRLLMDFSVIENII-FPQIIAGINHKTAYQRAMDLLSYM 134 DK+ R +++G V+Q L +V+EN+I P + G++ A +RA L+ + Sbjct: 81 KPADKRQLQRLRTRLGMVFQHFNLWSHMTVLENVIEAPVHVLGVSKAEAIERAEKYLAKV 140 Query: 135 DMSQYANRRSSDISGGEQQRVAICRAIANKPLIILADEPTGNLDLKTAQQVFSILKYLVV 194 +++ A+ + +SGG+QQRVAI RA+A +P ++L DEPT LD + +V +++ L Sbjct: 141 GIAEKADAYPAHLSGGQQQRVAIARALAMEPEVMLFDEPTSALDPELVGEVLKVMQDL-A 199 Query: 195 RSGLAALIATHNHDLASQMDRQI 217 G ++ TH A + + Sbjct: 200 EEGRTMVVVTHEMGFARDVSSHV 222 >gnl|CDD|73025 cd03266, ABC_NatA_sodium_exporter, NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.. Length = 218 Score = 116 bits (291), Expect = 7e-27 Identities = 55/222 (24%), Positives = 99/222 (44%), Gaps = 7/222 (3%) Query: 6 VLLLQNVKHSYRQVGKPFPVLENVHLSLKKGEIVALVSPSGTGKSTILHIAGLLEVPDQG 65 ++ + +R V K ++ V ++K GE+ L+ P+G GK+T L + L PD G Sbjct: 1 MITADALTKRFRDVKKTVQAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPDAG 60 Query: 66 NVIIANQLCNKLSDDKKSFLRCSKIGFVYQEHRLLMDFSVIENIIFPQIIAGINHKTAYQ 125 + K + + ++GFV L + EN+ + + G+ Sbjct: 61 FATVDGFDVVKEPAEARR-----RLGFVSDSTGLYDRLTARENLEYFAGLYGLKGDELTA 115 Query: 126 RAMDLLSYMDMSQYANRRSSDISGGEQQRVAICRAIANKPLIILADEPTGNLDLKTAQQV 185 R +L + M + +RR S G +Q+VAI RA+ + P ++L DEPT LD+ + + Sbjct: 116 RLEELADRLGMEELLDRRVGGFSTGMRQKVAIARALVHDPPVLLLDEPTTGLDVMATRAL 175 Query: 186 FSILKYLVVRSGLAALIATHN-HDLASQMDRQITIRDGMIAD 226 ++ L G L +TH ++ DR + + G + Sbjct: 176 REFIRQL-RALGKCILFSTHIMQEVERLCDRVVVLHRGRVVY 216 >gnl|CDD|73058 cd03299, ABC_ModC_like, Archeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.. Length = 235 Score = 115 bits (290), Expect = 1e-26 Identities = 59/202 (29%), Positives = 109/202 (53%), Gaps = 9/202 (4%) Query: 25 VLENVHLSLKKGEIVALVSPSGTGKSTILH-IAGLLEVPDQGNVIIANQLCNKLSDDKKS 83 L+NV L +++G+ ++ P+G+GKS +L IAG ++ PD G +++ + L +K+ Sbjct: 14 KLKNVSLEVERGDYFVILGPTGSGKSVLLETIAGFIK-PDSGKILLNGKDITNLPPEKR- 71 Query: 84 FLRCSKIGFVYQEHRLLMDFSVIENIIFPQIIAGINHKTAYQRAMDLLSYMDMSQYANRR 143 I +V Q + L +V +NI + ++ K ++ +++ + + NR+ Sbjct: 72 -----DISYVPQNYALFPHMTVYKNIAYGLKKRKVDKKEIERKVLEIAEMLGIDHLLNRK 126 Query: 144 SSDISGGEQQRVAICRAIANKPLIILADEPTGNLDLKTAQQVFSILKYLVVRSGLAALIA 203 +SGGEQQRVAI RA+ P I+L DEP LD++T +++ LK + G+ L Sbjct: 127 PETLSGGEQQRVAIARALVVNPKILLLDEPFSALDVRTKEKLREELKKIRKEFGVTVLHV 186 Query: 204 THNHDLASQM-DRQITIRDGMI 224 TH+ + A + D+ + +G + Sbjct: 187 THDFEEAWALADKVAIMLNGKL 208 >gnl|CDD|72994 cd03235, ABC_Metallic_Cations, ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.. Length = 213 Score = 114 bits (287), Expect = 2e-26 Identities = 63/205 (30%), Positives = 107/205 (52%), Gaps = 22/205 (10%) Query: 9 LQNVKHSYRQVGKPFPVLENVHLSLKKGEIVALVSPSGTGKSTILH-IAGLLEVPDQGNV 67 ++++ SY PVLE+V +K GE +A+V P+G GKST+L I GLL+ P G++ Sbjct: 2 VEDLTVSYGGH----PVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLK-PTSGSI 56 Query: 68 IIANQLCNKLSDDKKSFLRCSKIGFVYQEHRLLMDF--SVIENI---IFPQIIA-GINHK 121 + K +IG+V Q + DF SV + + ++ K Sbjct: 57 RV---------FGKPLEKERKRIGYVPQRRSIDRDFPISVRDVVLMGLYGHKGLFRRLSK 107 Query: 122 TAYQRAMDLLSYMDMSQYANRRSSDISGGEQQRVAICRAIANKPLIILADEPTGNLDLKT 181 + + L + +S+ A+R+ ++SGG+QQRV + RA+ P ++L DEP +D KT Sbjct: 108 ADKAKVDEALERVGLSELADRQIGELSGGQQQRVLLARALVQDPDLLLLDEPFAGVDPKT 167 Query: 182 AQQVFSILKYLVVRSGLAALIATHN 206 + ++ +L+ L R G+ L+ TH+ Sbjct: 168 QEDIYELLREL-RREGMTILVVTHD 191 >gnl|CDD|73054 cd03295, ABC_OpuCA_Osmoprotection, OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.. Length = 242 Score = 114 bits (286), Expect = 2e-26 Identities = 67/216 (31%), Positives = 109/216 (50%), Gaps = 9/216 (4%) Query: 9 LQNVKHSYRQVGKPFPVLENVHLSLKKGEIVALVSPSGTGKSTILHIAGLLEVPDQGNVI 68 +NV Y G + N++L + KGE + L+ PSG+GK+T + + L P G + Sbjct: 3 FENVTKRY---GGGKKAVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEPTSGEIF 59 Query: 69 IANQLCNKLSDDKKSFLRCSKIGFVYQEHRLLMDFSVIENIIFPQIIAGINHKTAYQRAM 128 I + + + LR KIG+V Q+ L +V ENI + + +RA Sbjct: 60 IDGEDIREQDPVE---LR-RKIGYVIQQIGLFPHMTVEENIALVPKLLKWPKEKIRERAD 115 Query: 129 DLLSYMDM--SQYANRRSSDISGGEQQRVAICRAIANKPLIILADEPTGNLDLKTAQQVF 186 +LL+ + + +++A+R ++SGG+QQRV + RA+A P ++L DEP G LD T Q+ Sbjct: 116 ELLALVGLDPAEFADRYPHELSGGQQQRVGVARALAADPPLLLMDEPFGALDPITRDQLQ 175 Query: 187 SILKYLVVRSGLAALIATHNHDLASQMDRQITIRDG 222 K L G + TH+ D A ++ +I I Sbjct: 176 EEFKRLQQELGKTIVFVTHDIDEAFRLADRIAIMKN 211 >gnl|CDD|73022 cd03263, ABC_subfamily_A, The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.. Length = 220 Score = 114 bits (286), Expect = 3e-26 Identities = 54/213 (25%), Positives = 105/213 (49%), Gaps = 9/213 (4%) Query: 7 LLLQNVKHSYRQVGKPFPVLENVHLSLKKGEIVALVSPSGTGKSTILHIAGLLEVPDQGN 66 L ++N+ +Y+ P ++++ L++ KGEI L+ +G GK+T L + P G Sbjct: 1 LQIRNLTKTYK--KGTKPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPTSGT 58 Query: 67 VIIANQLCNKLSDDKKSFLRCSKIGFVYQEHRLLMDFSVIENIIFPQIIAGINHKTAYQR 126 I N S +G+ Q L + +V E++ F + G+ + Sbjct: 59 AYI-----NGYSIRTDRKAARQSLGYCPQFDALFDELTVREHLRFYARLKGLPKSEIKEE 113 Query: 127 AMDLLSYMDMSQYANRRSSDISGGEQQRVAICRAIANKPLIILADEPTGNLDLKTAQQVF 186 LL + ++ AN+R+ +SGG ++++++ A+ P ++L DEPT LD + + ++ Sbjct: 114 VELLLRVLGLTDKANKRARTLSGGMKRKLSLAIALIGGPSVLLLDEPTSGLDPASRRAIW 173 Query: 187 SILKYLVVRSGLAALIATHNHDLASQMDRQITI 219 ++ L VR G + ++ TH+ D A + +I I Sbjct: 174 DLI--LEVRKGRSIILTTHSMDEAEALCDRIAI 204 >gnl|CDD|72987 cd03228, ABCC_MRP_Like, The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.. Length = 171 Score = 112 bits (283), Expect = 6e-26 Identities = 63/215 (29%), Positives = 94/215 (43%), Gaps = 48/215 (22%) Query: 9 LQNVKHSYRQVGKPFPVLENVHLSLKKGEIVALVSPSGTGKSTILH-IAGLLEVPDQGNV 67 +NV SY G+P PVL++V L++K GE VA+V PSG+GKST+L + L + P G + Sbjct: 3 FKNVSFSYP--GRPKPVLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYD-PTSGEI 59 Query: 68 IIANQLCNKLSDDKKSFLRCSKIGFVYQEHRLLMDFSVIENIIFPQIIAGINHKTAYQRA 127 +I L + I +V Q+ L ++ ENI Sbjct: 60 LIDGVDLRDLDLES----LRKNIAYVPQDP-FLFSGTIRENI------------------ 96 Query: 128 MDLLSYMDMSQYANRRSSDISGGEQQRVAICRAIANKPLIILADEPTGNLDLKTAQQVFS 187 +SGG++QR+AI RA+ P I++ DE T LD +T + Sbjct: 97 -------------------LSGGQRQRIAIARALLRDPPILILDEATSALDPETEALILE 137 Query: 188 ILKYLVVRSGLAALIATHNHDLASQMDRQITIRDG 222 L+ L G ++ H DR I + DG Sbjct: 138 ALRAL--AKGKTVIVIAHRLSTIRDADRIIVLDDG 170 >gnl|CDD|33915 COG4175, ProV, ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]. Length = 386 Score = 111 bits (280), Expect = 1e-25 Identities = 64/201 (31%), Positives = 110/201 (54%), Gaps = 3/201 (1%) Query: 26 LENVHLSLKKGEIVALVSPSGTGKSTIL-HIAGLLEVPDQGNVIIANQLCNKLSDDKKSF 84 + + L +++GEI ++ SG+GKST++ + L+E P +G +++ + KLS + Sbjct: 44 VNDASLDVEEGEIFVIMGLSGSGKSTLVRLLNRLIE-PTRGEILVDGKDIAKLSAAELRE 102 Query: 85 LRCSKIGFVYQEHRLLMDFSVIENIIFPQIIAGINHKTAYQRAMDLLSYMDMSQYANRRS 144 LR KI V+Q LL +V+EN+ F + G+ +RA++ L + + YA++ Sbjct: 103 LRRKKISMVFQSFALLPHRTVLENVAFGLEVQGVPKAEREERALEALELVGLEGYADKYP 162 Query: 145 SDISGGEQQRVAICRAIANKPLIILADEPTGNLDLKTAQQVFSILKYLVVRSGLAALIAT 204 +++SGG QQRV + RA+AN P I+L DE LD ++ L L + + T Sbjct: 163 NELSGGMQQRVGLARALANDPDILLMDEAFSALDPLIRTEMQDELLELQAKLKKTIVFIT 222 Query: 205 HNHDLASQMDRQITI-RDGMI 224 H+ D A ++ +I I +DG I Sbjct: 223 HDLDEALRIGDRIAIMKDGEI 243 >gnl|CDD|33913 COG4172, COG4172, ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]. Length = 534 Score = 111 bits (279), Expect = 1e-25 Identities = 69/238 (28%), Positives = 124/238 (52%), Gaps = 12/238 (5%) Query: 1 MDSAEVLLLQNVKHSYRQVGKPFPVLENVHLSLKKGEIVALVSPSGTGKS-TILHIAGLL 59 M + +L ++N+ ++ Q G ++ + ++ GE +ALV SG+GKS T L I GLL Sbjct: 1 MMTMPLLSIRNLSVAFHQEGGTVEAVKGISFDIEAGETLALVGESGSGKSVTALSILGLL 60 Query: 60 EVPD----QGNVIIANQLCNKLSDDKKSFLRCSKIGFVYQEHRLLMD-FSVIENIIFPQI 114 P G+++ + S+ + +R +KIG ++QE ++ I + + Sbjct: 61 PSPAAAHPSGSILFDGEDLLAASERQLRGVRGNKIGMIFQEPMTSLNPLHTIGKQLAEVL 120 Query: 115 IA--GINHKTAYQRAMDLLSYMDMSQYANRRSS---DISGGEQQRVAICRAIANKPLIIL 169 G++ A RA++LL + + + R + ++SGG++QRV I A+AN+P +++ Sbjct: 121 RLHRGLSRAAARARALELLELVGIPEPEKRLDAYPHELSGGQRQRVMIAMALANEPDLLI 180 Query: 170 ADEPTGNLDLKTAQQVFSILKYLVVRSGLAALIATHNHDLASQM-DRQITIRDGMIAD 226 ADEPT LD+ Q+ +LK L G+A L TH+ + + DR ++ G I + Sbjct: 181 ADEPTTALDVTVQAQILDLLKELQAELGMAILFITHDLGIVRKFADRVYVMQHGEIVE 238 Score = 88.7 bits (220), Expect = 1e-18 Identities = 64/218 (29%), Positives = 110/218 (50%), Gaps = 14/218 (6%) Query: 16 YRQVGKPFPVLENVHLSLKKGEIVALVSPSGTGKSTI-LHIAGLLEVPDQGNVIIANQLC 74 R+ ++ + L+L++G+ + LV SG+GKST+ L + L+ P QG + Q Sbjct: 293 LRRTVDHLRAVDGISLTLRRGQTLGLVGESGSGKSTLGLALLRLI--PSQGEIRFDGQDI 350 Query: 75 NKLSDDKKSFLRCSKIGFVYQEH------RLLMDFSVIENIIFPQIIAGINHKTAYQRAM 128 + LS + LR ++ V+Q+ R+ + + E + + ++ QR + Sbjct: 351 DGLSRKEMRPLR-RRMQVVFQDPYGSLSPRMTVGQIIEEGLRVHE--PKLSAAERDQRVI 407 Query: 129 DLLSYMDMSQYA-NRRSSDISGGEQQRVAICRAIANKPLIILADEPTGNLDLKTAQQVFS 187 + L + + NR + SGG++QR+AI RA+ KP +IL DEPT LD QV Sbjct: 408 EALEEVGLDPATRNRYPHEFSGGQRQRIAIARALILKPELILLDEPTSALDRSVQAQVLD 467 Query: 188 ILKYLVVRSGLAALIATHNHDLASQM-DRQITIRDGMI 224 +L+ L + GL+ L +H+ + + R I +RDG I Sbjct: 468 LLRDLQQKHGLSYLFISHDLAVVRALCHRVIVMRDGKI 505 >gnl|CDD|34242 COG4619, COG4619, ABC-type uncharacterized transport system, ATPase component [General function prediction only]. Length = 223 Score = 111 bits (279), Expect = 1e-25 Identities = 66/223 (29%), Positives = 111/223 (49%), Gaps = 11/223 (4%) Query: 7 LLLQNVKHSYRQVGKPFPVLENVHLSLKKGEIVALVSPSGTGKSTILHIAGLLEVPDQGN 66 +LL+ + Y +L N+ LS++ GE +A+ PSG GKST+L I L P G Sbjct: 2 MLLELKQVGYLAGDAK--ILNNISLSVRAGEFIAITGPSGCGKSTLLKIVASLISPTSGT 59 Query: 67 VIIANQLCNKLSDDKKSFLRCSKIGFVYQEHRLLMDFSVIENIIFPQIIAGINHKTAYQR 126 ++ + +S K R ++ + Q L D +V +N+IFP I N + Sbjct: 60 LLFEGE---DVSTLKPEAYRQ-QVSYCAQTPALFGD-TVEDNLIFPWQIR--NRRPDRAA 112 Query: 127 AMDLLSYMDMSQYA-NRRSSDISGGEQQRVAICRAIANKPLIILADEPTGNLDLKTAQQV 185 A+DLL+ + + +++SGGE+QR+A+ R + P I+L DE T LD + + Sbjct: 113 ALDLLARFALPDSILTKNITELSGGEKQRIALIRNLQFMPKILLLDEITSALDESNKRNI 172 Query: 186 FSILKYLVVRSGLAALIATHNHDLASQM-DRQITIRDGMIADL 227 ++ V +A L TH+ D A + D+ IT++ G ++ Sbjct: 173 EEMIHRYVREQNVAVLWITHDKDQAIRHADKVITLQPGHAGEM 215 >gnl|CDD|34199 COG4555, NatA, ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]. Length = 245 Score = 111 bits (278), Expect = 2e-25 Identities = 62/214 (28%), Positives = 109/214 (50%), Gaps = 7/214 (3%) Query: 12 VKHSYRQVGKPFPVLENVHLSLKKGEIVALVSPSGTGKSTILHIAGLLEVPDQGNVIIAN 71 V + G + +V ++GEI L+ +G GK+T+L + L +PD G V I Sbjct: 4 VTDLTKSYGSKVQAVRDVSFEAEEGEITGLLGENGAGKTTLLRMIATLLIPDSGKVTIDG 63 Query: 72 QLCNKLSDDKKSFLRCSKIGFVYQEHRLLMDFSVIENIIFPQIIAGINHKTAYQRAMDLL 131 + + D SF+R KIG ++ E L + EN+ + + G++ K R +L Sbjct: 64 --VDTVRD--PSFVR-RKIGVLFGERGLYARLTARENLKYFARLNGLSRKEIKARIAELS 118 Query: 132 SYMDMSQYANRRSSDISGGEQQRVAICRAIANKPLIILADEPTGNLDLKTAQQVFSILKY 191 + + +Y +RR + S G +Q+VAI RA+ + P I++ DEPT LD++T ++ +K Sbjct: 119 KRLQLLEYLDRRVGEFSTGMKQKVAIARALVHDPSILVLDEPTSGLDIRTRRKFHDFIKQ 178 Query: 192 LVVRSGLAALIATHN-HDLASQMDRQITIRDGMI 224 L G A + ++H ++ + DR I + G + Sbjct: 179 L-KNEGRAVIFSSHIMQEVEALCDRVIVLHKGEV 211 >gnl|CDD|30760 COG0411, LivG, ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]. Length = 250 Score = 109 bits (275), Expect = 5e-25 Identities = 60/227 (26%), Positives = 112/227 (49%), Gaps = 20/227 (8%) Query: 17 RQVGKPF---PVLENVHLSLKKGEIVALVSPSGTGKSTILHIAGLLEVPDQGNVIIANQL 73 R + K F + +V L ++ GEIV L+ P+G GK+T+ ++ P G VI + Sbjct: 8 RGLSKRFGGLTAVNDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFYKPSSGTVIFRGRD 67 Query: 74 CNKLSDDKKSFLRCSKIGFVYQEHRLLMDFSVIENIIFPQIIAGI------------NHK 121 L + + L I +Q RL +V+EN+ + Sbjct: 68 ITGLPPHRIARL---GIARTFQITRLFPGLTVLENVAVGAHARLGLSGLLGRPRARKEER 124 Query: 122 TAYQRAMDLLSYMDMSQYANRRSSDISGGEQQRVAICRAIANKPLIILADEPTGNLDLKT 181 A +RA +LL ++ + + A+R + ++S G+Q+R+ I RA+A +P ++L DEP L+ + Sbjct: 125 EARERARELLEFVGLGELADRPAGNLSYGQQRRLEIARALATQPKLLLLDEPAAGLNPEE 184 Query: 182 AQQVFSILKYLVVRSGLAALIATHNHDLASQM-DRQITIRDG-MIAD 226 +++ +++ L R G+ L+ H+ L + DR + + G +IA+ Sbjct: 185 TEELAELIRELRDRGGVTILLIEHDMKLVMGLADRIVVLNYGEVIAE 231 >gnl|CDD|73056 cd03297, ABC_ModC_molybdenum_transporter, ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.. Length = 214 Score = 109 bits (274), Expect = 6e-25 Identities = 58/194 (29%), Positives = 94/194 (48%), Gaps = 7/194 (3%) Query: 35 KGEIVALVSPSGTGKSTILHIAGLLEVPDQGNVIIANQLCNKLSDDKKSFL--RCSKIGF 92 E+ + SG GKST+L LE PD G +++ + KK L + KIG Sbjct: 22 NEEVTGIFGASGAGKSTLLRCIAGLEKPDGGTIVLNGTVLF--DSRKKINLPPQQRKIGL 79 Query: 93 VYQEHRLLMDFSVIENIIFPQIIAGINHKTAYQRAMDLLSYMDMSQYANRRSSDISGGEQ 152 V+Q++ L +V EN+ F + ++ +LL + + NR + +SGGE+ Sbjct: 80 VFQQYALFPHLNVRENLAF--GLKRKRNREDRISVDELLDLLGLDHLLNRYPAQLSGGEK 137 Query: 153 QRVAICRAIANKPLIILADEPTGNLDLKTAQQVFSILKYLVVRSGLAALIATHNHDLASQ 212 QRVA+ RA+A +P ++L DEP LD Q+ LK + + + TH+ A Sbjct: 138 QRVALARALAAQPELLLLDEPFSALDRALRLQLLPELKQIKKNLNIPVIFVTHDLSEAEY 197 Query: 213 M-DRQITIRDGMIA 225 + DR + + DG + Sbjct: 198 LADRIVVMEDGRLQ 211 >gnl|CDD|72989 cd03230, ABC_DR_subfamily_A, This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.. Length = 173 Score = 109 bits (275), Expect = 6e-25 Identities = 54/220 (24%), Positives = 107/220 (48%), Gaps = 49/220 (22%) Query: 7 LLLQNVKHSYRQVGKPFPVLENVHLSLKKGEIVALVSPSGTGKSTIL-HIAGLLEVPDQG 65 + ++N+ Y L+++ L+++KGEI L+ P+G GK+T++ I GLL+ PD G Sbjct: 1 IEVRNLSKRY----GKKTALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLK-PDSG 55 Query: 66 NVIIANQLCNKLSDDKKSFLRCSKIGFVYQEHRLLMDFSVIENIIFPQIIAGINHKTAYQ 125 + + + K ++ K +IG++ +E L + +V EN+ Sbjct: 56 EIKVLGKDIKKEPEEVKR-----RIGYLPEEPSLYENLTVRENLKL-------------- 96 Query: 126 RAMDLLSYMDMSQYANRRSSDISGGEQQRVAICRAIANKPLIILADEPTGNLDLKTAQQV 185 SGG +QR+A+ +A+ + P +++ DEPT LD ++ ++ Sbjct: 97 ----------------------SGGMKQRLALAQALLHDPELLILDEPTSGLDPESRREF 134 Query: 186 FSILKYLVVRSGLAALIATHNHDLASQM-DRQITIRDGMI 224 + +L+ L + G L+++H + A ++ DR + +G I Sbjct: 135 WELLREL-KKEGKTILLSSHILEEAERLCDRVAILNNGRI 173 >gnl|CDD|31332 COG1137, YhbG, ABC-type (unclassified) transport system, ATPase component [General function prediction only]. Length = 243 Score = 109 bits (273), Expect = 8e-25 Identities = 68/222 (30%), Positives = 112/222 (50%), Gaps = 11/222 (4%) Query: 6 VLLLQNVKHSYRQVGKPFPVLENVHLSLKKGEIVALVSPSGTGKSTILHIAGLLEVPDQG 65 L+ +N+ SY++ V+ +V L + GEIV L+ P+G GK+T ++ L PD G Sbjct: 4 TLVAENLAKSYKKR----KVVNDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVGLVRPDSG 59 Query: 66 NVIIANQLCNKLSDDKKSFLRCSKIGFVYQEHRLLMDFSVIENIIFPQIIAGINHKTAYQ 125 +++ ++ KL K++ L IG++ QE + +V +NI+ I + K A + Sbjct: 60 KILLDDEDITKLPMHKRARL---GIGYLPQEASIFRKLTVEDNIMAVLEIREKDLKKAER 116 Query: 126 --RAMDLLSYMDMSQYANRRSSDISGGEQQRVAICRAIANKPLIILADEPTGNLDLKTAQ 183 LL ++ + ++ +SGGE++RV I RA+A P IL DEP +D Sbjct: 117 KEELDALLEEFHITHLRDSKAYSLSGGERRRVEIARALAANPKFILLDEPFAGVDPIAVI 176 Query: 184 QVFSILKYLVVRSGLAALIATHN-HDLASQMDRQITIRDGMI 224 + I+K+L R G+ LI HN + DR I DG + Sbjct: 177 DIQRIIKHLKDR-GIGVLITDHNVRETLDICDRAYIISDGKV 217 >gnl|CDD|30759 COG0410, LivF, ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]. Length = 237 Score = 108 bits (272), Expect = 1e-24 Identities = 65/226 (28%), Positives = 115/226 (50%), Gaps = 14/226 (6%) Query: 4 AEVLLLQNVKHSYRQVGKPFPVLENVHLSLKKGEIVALVSPSGTGKSTILH-IAGLLEVP 62 A +L ++N+ Y L V L +++GEIVAL+ +G GK+T+L I GL+ P Sbjct: 1 APMLEVENLSAGY----GKIQALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVR-P 55 Query: 63 DQGNVIIANQLCNKLSDDKKSFLRCSKIGFVYQEHRLLMDFSVIENIIFPQIIAGINHKT 122 G +I + L +++ L I +V + R+ +V EN++ K Sbjct: 56 RSGRIIFDGEDITGLPPHERARLG---IAYVPEGRRIFPRLTVEENLLLG--AYARRDKE 110 Query: 123 AYQRAMDLLSYM--DMSQYANRRSSDISGGEQQRVAICRAIANKPLIILADEPTGNLDLK 180 A +R ++ + + + + N+R+ +SGGEQQ +AI RA+ ++P ++L DEP+ L K Sbjct: 111 AQERDLEEVYELFPRLKERRNQRAGTLSGGEQQMLAIARALMSRPKLLLLDEPSEGLAPK 170 Query: 181 TAQQVFSILKYLVVRSGLAALIATHNHDLASQM-DRQITIRDGMIA 225 +++F +K L G+ L+ N A ++ DR + +G I Sbjct: 171 IVEEIFEAIKELRKEGGMTILLVEQNARFALEIADRGYVLENGRIV 216 >gnl|CDD|73024 cd03265, ABC_DrrA, DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.. Length = 220 Score = 106 bits (266), Expect = 5e-24 Identities = 54/204 (26%), Positives = 100/204 (49%), Gaps = 6/204 (2%) Query: 23 FPVLENVHLSLKKGEIVALVSPSGTGKSTILHIAGLLEVPDQGNVIIANQLCNKLSDDKK 82 F + V +++GEI L+ P+G GK+T + + L P G +A + + + Sbjct: 13 FEAVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPTSGRATVAGHDVVREPREVR 72 Query: 83 SFLRCSKIGFVYQEHRLLMDFSVIENIIFPQIIAGINHKTAYQRAMDLLSYMDMSQYANR 142 +IG V+Q+ + + + EN+ + G+ +R +LL ++ + + A+R Sbjct: 73 R-----RIGIVFQDLSVDDELTGWENLYIHARLYGVPGAERRERIDELLDFVGLLEAADR 127 Query: 143 RSSDISGGEQQRVAICRAIANKPLIILADEPTGNLDLKTAQQVFSILKYLVVRSGLAALI 202 SGG ++R+ I R++ ++P ++ DEPT LD +T V+ ++ L G+ L+ Sbjct: 128 LVKTYSGGMRRRLEIARSLVHRPEVLFLDEPTIGLDPQTRAHVWEYIEKLKEEFGMTILL 187 Query: 203 ATHNHDLASQM-DRQITIRDGMIA 225 TH + A Q+ DR I G I Sbjct: 188 TTHYMEEAEQLCDRVAIIDHGRII 211 >gnl|CDD|32455 COG2274, SunT, ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]. Length = 709 Score = 106 bits (266), Expect = 6e-24 Identities = 68/224 (30%), Positives = 105/224 (46%), Gaps = 18/224 (8%) Query: 9 LQNVKHSYRQVGKPFPVLENVHLSLKKGEIVALVSPSGTGKSTILHIAGLLEVPDQGNVI 68 +NV Y P VLE++ L + GE VA+V SG+GKST+L + L P QG ++ Sbjct: 474 FENVSFRYGPDDPP--VLEDLSLEIPPGEKVAIVGRSGSGKSTLLKLLLGLYKPQQGRIL 531 Query: 69 IANQLCNKLSDDKKSFLRCSKIGFVYQEHRLLMDFSVIENIIF-------PQIIAGINHK 121 + L+D + LR ++G+V Q+ L S+ ENI +II Sbjct: 532 LDGV---DLNDIDLASLR-RQVGYVLQDP-FLFSGSIRENIALGNPEATDEEIIEAAQLA 586 Query: 122 TAYQRAMDLLSYMDMSQYANRRSSDISGGEQQRVAICRAIANKPLIILADEPTGNLDLKT 181 A++ +L M +++SGG++QR+A+ RA+ +KP I+L DE T LD +T Sbjct: 587 GAHEFIENL--PMGYDTPVGEGGANLSGGQRQRLALARALLSKPKILLLDEATSALDPET 644 Query: 182 AQQVFSILKYLVVRSGLAALIATHNHDLASQMDRQITIRDGMIA 225 + L + G +I H DR I + G I Sbjct: 645 EAIILQNLLQI--LQGRTVIIIAHRLSTIRSADRIIVLDQGKIV 686 >gnl|CDD|72983 cd03224, ABC_TM1139_LivF_branched, LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.. Length = 222 Score = 105 bits (264), Expect = 9e-24 Identities = 58/223 (26%), Positives = 112/223 (50%), Gaps = 16/223 (7%) Query: 7 LLLQNVKHSYRQVGKPFPVLENVHLSLKKGEIVALVSPSGTGKSTILH-IAGLLEVPDQG 65 L ++N+ Y + +L V L++ +GEIVAL+ +G GK+T+L I GLL P G Sbjct: 1 LEVENLNAGYGK----SQILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLP-PRSG 55 Query: 66 NVIIANQLCNKLSDDKKSFLRCSKIGFVYQEHRLLMDFSVIENIIFPQIIAGINHKTAYQ 125 ++ + L +++ IG+V + R+ + +V EN+ + A + + Sbjct: 56 SIRFDGRDITGLPPHERARA---GIGYVPEGRRIFPELTVEENL---LLGAYARRRAKRK 109 Query: 126 RAMDLLSYM--DMSQYANRRSSDISGGEQQRVAICRAIANKPLIILADEPTGNLDLKTAQ 183 ++ + + + + + + +SGGEQQ +AI RA+ ++P ++L DEP+ L K + Sbjct: 110 ARLERVYELFPRLKERRKQLAGTLSGGEQQMLAIARALMSRPKLLLLDEPSEGLAPKIVE 169 Query: 184 QVFSILKYLVVRSGLAALIATHNHDLASQM-DRQITIRDGMIA 225 ++F ++ L G+ L+ N A ++ DR + G + Sbjct: 170 EIFEAIREL-RDEGVTILLVEQNARFALEIADRAYVLERGRVV 211 >gnl|CDD|72985 cd03226, ABC_cobalt_CbiO_domain2, Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.. Length = 205 Score = 103 bits (258), Expect = 5e-23 Identities = 56/218 (25%), Positives = 116/218 (53%), Gaps = 17/218 (7%) Query: 9 LQNVKHSYRQVGKPFPVLENVHLSLKKGEIVALVSPSGTGKSTILHIAGLLEVPDQGNVI 68 ++N+ SY++ + +L+++ L L GEI+AL +G GK+T+ I L G+++ Sbjct: 2 IENISFSYKKGTE---ILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKESSGSIL 58 Query: 69 IANQLCNKLSDDKKSFLRCSKIGFVYQEHRLLMDFSVIENIIFPQIIAGINHKTA-YQRA 127 + K+ R IG+V Q+ +D+ + + + +++ G+ A ++A Sbjct: 59 LNG-------KPIKAKERRKSIGYVMQD----VDYQLFTDSVREELLLGLKELDAGNEQA 107 Query: 128 MDLLSYMDMSQYANRRSSDISGGEQQRVAICRAIANKPLIILADEPTGNLDLKTAQQVFS 187 +L +D+ R +SGG++QR+AI A+ + +++ DEPT LD K ++V Sbjct: 108 ETVLKDLDLYALKERHPLSLSGGQKQRLAIAAALLSGKDLLIFDEPTSGLDYKNMERVGE 167 Query: 188 ILKYLVVRSGLAALIATHNHDLASQM-DRQITIRDGMI 224 +++ L G A ++ TH+++ +++ DR + + +G I Sbjct: 168 LIREL-AAQGKAVIVITHDYEFLAKVCDRVLLLANGAI 204 >gnl|CDD|72978 cd03219, ABC_Mj1267_LivG_branched, The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).. Length = 236 Score = 102 bits (257), Expect = 7e-23 Identities = 59/217 (27%), Positives = 113/217 (52%), Gaps = 19/217 (8%) Query: 17 RQVGKPF---PVLENVHLSLKKGEIVALVSPSGTGKSTILH-IAGLLEVPDQGNVIIANQ 72 R + K F L++V S++ GEI L+ P+G GK+T+ + I+G L P G+V+ + Sbjct: 4 RGLTKRFGGLVALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLR-PTSGSVLFDGE 62 Query: 73 LCNKLSDDKKSFLRCSKIGFVYQEHRLLMDFSVIENII----------FPQIIAGINHKT 122 L + + L IG +Q RL + +V+EN++ A + Sbjct: 63 DITGLPPHEIARL---GIGRTFQIPRLFPELTVLENVMVAAQARTGSGLLLARARREERE 119 Query: 123 AYQRAMDLLSYMDMSQYANRRSSDISGGEQQRVAICRAIANKPLIILADEPTGNLDLKTA 182 A +RA +LL + ++ A+R + ++S G+Q+R+ I RA+A P ++L DEP L+ + Sbjct: 120 ARERAEELLERVGLADLADRPAGELSYGQQRRLEIARALATDPKLLLLDEPAAGLNPEET 179 Query: 183 QQVFSILKYLVVRSGLAALIATHNHDLASQMDRQITI 219 +++ +++ L G+ L+ H+ D+ + ++T+ Sbjct: 180 EELAELIREL-RERGITVLLVEHDMDVVMSLADRVTV 215 >gnl|CDD|33636 COG3845, COG3845, ABC-type uncharacterized transport systems, ATPase components [General function prediction only]. Length = 501 Score = 101 bits (253), Expect = 2e-22 Identities = 66/213 (30%), Positives = 104/213 (48%), Gaps = 11/213 (5%) Query: 17 RQVGKPFP---VLENVHLSLKKGEIVALVSPSGTGKSTILHIAGLLEVPDQGNVIIANQL 73 R + K FP ++V LS+KKGEI AL+ +G GKST++ I L PD G + + + Sbjct: 8 RGITKRFPGVVANDDVSLSVKKGEIHALLGENGAGKSTLMKILFGLYQPDSGEIRVDGK- 66 Query: 74 CNKLSDDKKSFLRCSKIGFVYQEHRLLMDFSVIENIIF---PQIIAGINHKTAYQRAMDL 130 ++ IG V+Q L+ +V ENII P I+ + A R +L Sbjct: 67 --EVRIKSPRDAIRLGIGMVHQHFMLVPTLTVAENIILGLEPSKGGLIDRRQARARIKEL 124 Query: 131 LSYMDMSQYANRRSSDISGGEQQRVAICRAIANKPLIILADEPTGNLDLKTAQQVFSILK 190 + + + +D+S GEQQRV I +A+ +++ DEPT L + A ++F IL+ Sbjct: 125 SERYGLPVDPDAKVADLSVGEQQRVEILKALYRGARLLILDEPTAVLTPQEADELFEILR 184 Query: 191 YLVVRSGLAALIATHN-HDLASQMDRQITIRDG 222 L G + TH ++ + DR +R G Sbjct: 185 RL-AAEGKTIIFITHKLKEVMAIADRVTVLRRG 216 Score = 76.7 bits (189), Expect = 5e-15 Identities = 50/228 (21%), Positives = 101/228 (44%), Gaps = 17/228 (7%) Query: 12 VKHSYRQVGKPFPVLENVHLSLKKGEIVALVSPSGTGKSTILHIAGLLEVPDQGNVIIAN 71 V+ + + +++V ++ GEIV + +G G+S ++ L P G +++ Sbjct: 260 VEDLSVKDRRGVTAVKDVSFEVRAGEIVGIAGVAGNGQSELVEAISGLRKPASGRILLNG 319 Query: 72 QLCNKLSDDKKSFLRCSKIGFVYQE---HRLLMDFSVIENIIFPQIIAG-------INHK 121 + L R + +V ++ H L++D S+ EN++ + ++ + Sbjct: 320 --KDVLGRLSPRERRRLGLAYVPEDRHGHGLVLDLSLAENLVLGRHDKKPFSRGGFLDRR 377 Query: 122 TAYQRAMDLLSYMDM---SQYANRRSSDISGGEQQRVAICRAIANKPLIILADEPTGNLD 178 + A +L+ D+ S A RS +SGG QQ++ + R +A +P +++A +PT LD Sbjct: 378 AIRKFARELIEEFDVRAPSPDAPARS--LSGGNQQKLILARELARRPDLLIAAQPTRGLD 435 Query: 179 LKTAQQVFSILKYLVVRSGLAALIATHNHDLASQMDRQITIRDGMIAD 226 + + + L L LI+ ++ DR I +G I Sbjct: 436 VGAIEFIHERLLELRDAGKAVLLISEDLDEILELSDRIAVIYEGRIVG 483 >gnl|CDD|35278 KOG0055, KOG0055, KOG0055, Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]. Length = 1228 Score = 101 bits (253), Expect = 2e-22 Identities = 66/225 (29%), Positives = 103/225 (45%), Gaps = 21/225 (9%) Query: 9 LQNVKHSYRQVGKP-FPVLENVHLSLKKGEIVALVSPSGTGKSTILH-IAGLLEVPDQGN 66 +NV SY +P +L+ V L + G+ VALV PSG+GKST++ +A + P G Sbjct: 353 FRNVCFSY--PSRPDVKILKGVSLKIPSGQTVALVGPSGSGKSTLIQLLARFYD-PTSGE 409 Query: 67 VIIANQLCNKLSDDKKSFLRCSKIGFVYQEHRLLMDFSVIENIIF-------PQIIAGIN 119 V+I + + +LR S+IG V QE +L ++ ENI + +I Sbjct: 410 VLIDG---EDIRNLNLKWLR-SQIGLVSQE-PVLFATTIRENIRYGKPDATREEIEEAAK 464 Query: 120 HKTAYQRAMDLLSYMDMSQYANRRSSDISGGEQQRVAICRAIANKPLIILADEPTGNLDL 179 A+ + L D R +SGG++QR+AI RA+ P I+L DE T LD Sbjct: 465 AANAHDFILKLPDGYDT--LVGERGVQLSGGQKQRIAIARALVRNPKILLLDEATSALDA 522 Query: 180 KTAQQVFSILKYLVVRSGLAALIATHNHDLASQMDRQITIRDGMI 224 ++ + V L G ++ H D+ + +G I Sbjct: 523 ESERVVQEALDKA--SKGRTTIVVAHRLSTIRNADKIAVMEEGKI 565 Score = 94.9 bits (236), Expect = 2e-20 Identities = 70/229 (30%), Positives = 106/229 (46%), Gaps = 21/229 (9%) Query: 7 LLLQNVKHSYRQVGKP-FPVLENVHLSLKKGEIVALVSPSGTGKSTILHIAGLLEV---P 62 + +NV +Y +P PVL N+ LS++ G+ VALV PSG+GKST++ LLE P Sbjct: 988 IEFRNVSFAYPT--RPDVPVLNNLSLSIRAGQTVALVGPSGSGKSTVI---SLLERFYDP 1042 Query: 63 DQGNVIIANQLCNKLSDDKKSFLRCSKIGFVYQEHRLLMDFSVIENIIFPQI---IAGIN 119 D G V I L+ +LR +IG V QE L + ++ ENI + I Sbjct: 1043 DAGKVKIDGVDIKDLN---LKWLR-KQIGLVSQEPVLF-NGTIRENIAYGSEEVSEEEII 1097 Query: 120 HKTAYQRAMDLLSYMD--MSQYANRRSSDISGGEQQRVAICRAIANKPLIILADEPTGNL 177 A + +S + R +SGG++QR+AI RAI P I+L DE T L Sbjct: 1098 EAAKLANAHNFISSLPQGYDTRVGERGVQLSGGQKQRIAIARAILRNPKILLLDEATSAL 1157 Query: 178 DLKTAQQVFSILKYLVVRSGLAALIATHNHDLASQMDRQITIRDGMIAD 226 D ++ + V L G ++ H D +++G + + Sbjct: 1158 DSESERVVQEALDR--AMEGRTTIVIAHRLSTIQNADVIAVLKNGKVVE 1204 >gnl|CDD|34593 COG4988, CydD, ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]. Length = 559 Score = 100 bits (251), Expect = 3e-22 Identities = 59/207 (28%), Positives = 104/207 (50%), Gaps = 13/207 (6%) Query: 24 PVLENVHLSLKKGEIVALVSPSGTGKSTILH-IAGLLEVPDQGNVIIANQLCNKLSDDKK 82 P L +++L++K G++ ALV SG GKST+L+ + G L P QG + + LS + Sbjct: 335 PALSDLNLTIKAGQLTALVGASGAGKSTLLNLLLGFLA-PTQGEIRVNGIDLRDLSPEAW 393 Query: 83 SFLRCSKIGFVYQEHRLLMDFSVIENIIFPQIIAGINHKTAYQRAMDLLSYMDMSQYAN- 141 +I +V Q + L ++ ENI+ + A A LL ++ + Sbjct: 394 R----KQISWVSQ-NPYLFAGTIRENILLARPDASDEEIIAALDQAGLLEFVPKPDGLDT 448 Query: 142 ---RRSSDISGGEQQRVAICRAIANKPLIILADEPTGNLDLKTAQQVFSILKYLVVRSGL 198 + +SGG+ QR+A+ RA+ + ++L DEPT +LD +T Q + L+ L + + Sbjct: 449 VIGEGGAGLSGGQAQRLALARALLSPASLLLLDEPTAHLDAETEQIILQALQELAKQKTV 508 Query: 199 AALIATHNHDLASQMDRQITIRDGMIA 225 L+ TH + A+ DR + + +G + Sbjct: 509 --LVITHRLEDAADADRIVVLDNGRLV 533 >gnl|CDD|73028 cd03269, ABC_putative_ATPase, This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.. Length = 210 Score = 99.5 bits (248), Expect = 7e-22 Identities = 56/217 (25%), Positives = 115/217 (52%), Gaps = 14/217 (6%) Query: 7 LLLQNVKHSYRQVGKPFPVLENVHLSLKKGEIVALVSPSGTGKSTILHIAGLLEVPDQGN 66 L ++NV + +V L+++ S++KGEI L+ P+G GK+T + + + +PD G Sbjct: 1 LEVENVTKRFGRV----TALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILPDSGE 56 Query: 67 VIIANQLCNKLSDDKKSFLRCSKIGFVYQEHRLLMDFSVIENIIFPQIIAGINHKTAYQR 126 V+ + ++IG++ +E L VI+ +++ + G+ + A +R Sbjct: 57 VLFDGK--------PLDIAARNRIGYLPEERGLYPKMKVIDQLVYLAQLKGLKKEEARRR 108 Query: 127 AMDLLSYMDMSQYANRRSSDISGGEQQRVAICRAIANKPLIILADEPTGNLDLKTAQQVF 186 + L +++S+YAN+R ++S G QQ+V A+ + P +++ DEP LD + + Sbjct: 109 IDEWLERLELSEYANKRVEELSKGNQQKVQFIAAVIHDPELLILDEPFSGLDPVNVELLK 168 Query: 187 SILKYLVVRSGLAALIATHNHDLASQM-DRQITIRDG 222 +++ L R+G +++TH +L ++ DR + + G Sbjct: 169 DVIREL-ARAGKTVILSTHQMELVEELCDRVLLLNKG 204 >gnl|CDD|34390 COG4778, PhnL, ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]. Length = 235 Score = 98.4 bits (245), Expect = 1e-21 Identities = 67/223 (30%), Positives = 113/223 (50%), Gaps = 12/223 (5%) Query: 7 LLLQNVKHSY---RQVGKPFPVLENVHLSLKKGEIVALVSPSGTGKSTILHIAGLLEVPD 63 L + NV ++ +Q G PVL NV LS+ GE V L PSG+GKST+L +PD Sbjct: 5 LNVSNVSKTFTLHQQGGVRLPVLRNVSLSVNAGECVVLHGPSGSGKSTLLRSLYANYLPD 64 Query: 64 QGNVIIANQ-----LCNKLSDDKKSFLRCSKIGFVYQEHRLLMDFSVIENIIFPQIIAGI 118 +G +++ ++ L + +R + IG+V Q R++ S ++ + P + G+ Sbjct: 65 EGQILVRHEGEWVDLVT-AEPREVLEVRRTTIGYVSQFLRVIPRVSALDVVAEPLLARGV 123 Query: 119 NHKTAYQRAMDLLSYMDMSQYANRRS-SDISGGEQQRVAICRAIANKPLIILADEPTGNL 177 + A +A DLL+ +++ + + + SGGEQQRV I R I+L DEPT +L Sbjct: 124 PREVARAKAADLLTRLNLPERLWSLAPATFSGGEQQRVNIARGFIVDYPILLLDEPTASL 183 Query: 178 DLKTAQQVFSILKYLVVRSGLAALIATHNHDLASQM-DRQITI 219 D V +++ R G A + H+ ++ + DR + + Sbjct: 184 DATNRAVVVELIREAKAR-GAALVGIFHDEEVREAVADRLLDV 225 >gnl|CDD|72971 cd00267, ABC_ATPase, ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.. Length = 157 Score = 96.9 bits (241), Expect = 4e-21 Identities = 62/215 (28%), Positives = 95/215 (44%), Gaps = 61/215 (28%) Query: 9 LQNVKHSYRQVGKPFPVLENVHLSLKKGEIVALVSPSGTGKSTILHIAGLLEVPDQGNVI 68 ++N+ Y L+NV L+LK GEIVALV P+G+GKST+L L P G ++ Sbjct: 2 IENLSFRYGGR----TALDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLLKPTSGEIL 57 Query: 69 IANQLCNKLSDDKKSFLRCSKIGFVYQEHRLLMDFSVIENIIFPQIIAGINHKTAYQRAM 128 I + ++ LR +IG+V Q Sbjct: 58 IDGK---DIAKLPLEELR-RRIGYVPQ--------------------------------- 80 Query: 129 DLLSYMDMSQYANRRSSDISGGEQQRVAICRAIANKPLIILADEPTGNLDLKTAQQVFSI 188 +SGG++QRVA+ RA+ P ++L DEPT LD + +++ + Sbjct: 81 ------------------LSGGQRQRVALARALLLNPDLLLLDEPTSGLDPASRERLLEL 122 Query: 189 LKYLVVRSGLAALIATHNHDLASQM-DRQITIRDG 222 L+ L G +I TH+ +LA DR I ++DG Sbjct: 123 LREL-AEEGRTVIIVTHDPELAELAADRVIVLKDG 156 >gnl|CDD|31327 COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]. Length = 567 Score = 96.7 bits (240), Expect = 5e-21 Identities = 70/228 (30%), Positives = 108/228 (47%), Gaps = 21/228 (9%) Query: 7 LLLQNVKHSYRQVGKPFPVLENVHLSLKKGEIVALVSPSGTGKSTILH-IAGLLEVPDQG 65 + +NV SY PVL+++ S++ GE VA+V PSG+GKST++ + L + P G Sbjct: 329 IEFENVSFSY---PGKKPVLKDISFSIEPGEKVAIVGPSGSGKSTLIKLLLRLYD-PTSG 384 Query: 66 NVIIANQLCNKLSDDKKSFLRCSKIGFVYQEHRLLMDFSVIENIIF-------PQIIAGI 118 ++I + D LR +IG V Q+ LL ++ ENI +I + Sbjct: 385 EILIDGI---DIRDISLDSLR-KRIGIVSQDP-LLFSGTIRENIALGRPDATDEEIEEAL 439 Query: 119 NHKTAYQRAMDLLSYMDMSQYANRRSSDISGGEQQRVAICRAIANKPLIILADEPTGNLD 178 A++ +L D R ++SGG++QR+AI RA+ P I++ DE T LD Sbjct: 440 KLANAHEFIANLPDGYDT--IVGERGVNLSGGQRQRLAIARALLRNPPILILDEATSALD 497 Query: 179 LKTAQQVFSILKYLVVRSGLAALIATHNHDLASQMDRQITIRDGMIAD 226 +T + LK L G LI H DR I + +G I + Sbjct: 498 TETEALIQDALKKL--LKGRTTLIIAHRLSTIKNADRIIVLDNGRIVE 543 >gnl|CDD|34592 COG4987, CydC, ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]. Length = 573 Score = 95.3 bits (237), Expect = 1e-20 Identities = 64/227 (28%), Positives = 105/227 (46%), Gaps = 16/227 (7%) Query: 6 VLLLQNVKHSYRQVGKPFPVLENVHLSLKKGEIVALVSPSGTGKSTILHIAGLLEVPDQG 65 L L+NV +Y G+ L+N +L+L +GE VA++ SG+GKST+L + P QG Sbjct: 336 ALELRNVSFTYP--GQQTKALKNFNLTLAQGEKVAILGRSGSGKSTLLQLLAGAWDPQQG 393 Query: 66 NVIIANQLCNKLSDDKKSFLRCSKIGFVYQEHRLLMDFSVIENIIFPQIIAGINHKTAYQ 125 ++ + L + I + Q L ++ +N+ A A Sbjct: 394 SITLNGVEIASLDEQALR----ETISVLTQRVHLFSG-TLRDNLRLANPDASDEELWAAL 448 Query: 126 RAMDLLSYM-DMSQYANRRSSD----ISGGEQQRVAICRA-IANKPLIILADEPTGNLDL 179 + + L + N + +SGGE++R+A+ RA + + PL +L DEPT LD Sbjct: 449 QQVGLEKLLESAPDGLNTWLGEGGRRLSGGERRRLALARALLHDAPLWLL-DEPTEGLDP 507 Query: 180 KTAQQVFSILKYLVVRSGLAALIATHNHDLASQMDRQITIRDGMIAD 226 T +QV ++L G L+ TH +MDR I + +G I + Sbjct: 508 ITERQVLALL--FEHAEGKTLLMVTHRLRGLERMDRIIVLDNGKIIE 552 >gnl|CDD|73026 cd03267, ABC_NatA_like, Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.. Length = 236 Score = 94.9 bits (236), Expect = 2e-20 Identities = 60/220 (27%), Positives = 109/220 (49%), Gaps = 9/220 (4%) Query: 8 LLQNVKHSYRQVGKPFPVLENVHLSLKKGEIVALVSPSGTGKSTILHI-AGLLEVPDQGN 66 L+ ++K +++ + L+ + +++KGEIV + P+G GK+T L I +GLL P G Sbjct: 19 LIGSLKSLFKRKYREVEALKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLL-QPTSGE 77 Query: 67 VIIANQLCNKLSDDKKSFLRCSKIGFVY-QEHRLLMDFSVIENIIFPQIIAGINHKTAYQ 125 V +A + +K FLR +IG V+ Q+ +L D VI++ I + + Sbjct: 78 VRVAGLVP---WKRRKKFLR--RIGVVFGQKTQLWWDLPVIDSFYLLAAIYDLPPARFKK 132 Query: 126 RAMDLLSYMDMSQYANRRSSDISGGEQQRVAICRAIANKPLIILADEPTGNLDLKTAQQV 185 R +L +D+ + + +S G++ R I A+ ++P I+ DEPT LD+ + + Sbjct: 133 RLDELSELLDLEELLDTPVRQLSLGQRMRAEIAAALLHEPEILFLDEPTIGLDVVAQENI 192 Query: 186 FSILKYLVVRSGLAALIATHN-HDLASQMDRQITIRDGMI 224 + LK G L+ +H D+ + R + I G + Sbjct: 193 RNFLKEYNRERGTTVLLTSHYMKDIEALARRVLVIDKGRL 232 >gnl|CDD|73010 cd03251, ABCC_MsbA, MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.. Length = 234 Score = 94.1 bits (234), Expect = 3e-20 Identities = 67/225 (29%), Positives = 106/225 (47%), Gaps = 18/225 (8%) Query: 9 LQNVKHSYRQVGKPFPVLENVHLSLKKGEIVALVSPSGTGKSTILHIAGLLEVPDQGNVI 68 +NV Y G PVL ++ L + GE VALV PSG+GKST++++ D G ++ Sbjct: 3 FKNVTFRYP--GDGPPVLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYDVDSGRIL 60 Query: 69 IANQLCNKLSDDKKSFLRCSKIGFVYQEHRLLMDFSVIENIIF-------PQIIAGINHK 121 I + D + LR +IG V Q+ L D +V ENI + ++ Sbjct: 61 IDGH---DVRDYTLASLR-RQIGLVSQDVFLFND-TVAENIAYGRPGATREEVEEAARAA 115 Query: 122 TAYQRAMDLLSYMDMSQYANRRSSDISGGEQQRVAICRAIANKPLIILADEPTGNLDLKT 181 A++ M+L D R +SGG++QR+AI RA+ P I++ DE T LD ++ Sbjct: 116 NAHEFIMELPEGYD--TVIGERGVKLSGGQRQRIAIARALLKDPPILILDEATSALDTES 173 Query: 182 AQQVFSILKYLVVRSGLAALIATHNHDLASQMDRQITIRDGMIAD 226 + V + L+ L+ + H DR + + DG I + Sbjct: 174 ERLVQAALERLMK--NRTTFVIAHRLSTIENADRIVVLEDGKIVE 216 >gnl|CDD|73023 cd03264, ABC_drug_resistance_like, ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.. Length = 211 Score = 93.3 bits (232), Expect = 5e-20 Identities = 57/220 (25%), Positives = 107/220 (48%), Gaps = 13/220 (5%) Query: 7 LLLQNVKHSYRQVGKPFPVLENVHLSLKKGEIVALVSPSGTGKSTILHIAGLLEVPDQGN 66 L L+N+ Y + + L+ V L+L G + L+ P+G GK+T++ I L P G Sbjct: 1 LQLENLTKRYGK-KR---ALDGVSLTLGPG-MYGLLGPNGAGKTTLMRILATLTPPSSGT 55 Query: 67 VIIANQLCNKLSDDKKSFLRCSKIGFVYQEHRLLMDFSVIENIIFPQIIAGINHKTAYQR 126 + I Q + + R +IG++ QE + +F+V E + + + GI K R Sbjct: 56 IRIDGQ---DVLKQPQKLRR--RIGYLPQEFGVYPNFTVREFLDYIAWLKGIPSKEVKAR 110 Query: 127 AMDLLSYMDMSQYANRRSSDISGGEQQRVAICRAIANKPLIILADEPTGNLDLKTAQQVF 186 ++L +++ A ++ +SGG ++RV I +A+ P I++ DEPT LD + + Sbjct: 111 VDEVLELVNLGDRAKKKIGSLSGGMRRRVGIAQALVGDPSILIVDEPTAGLDPEERIRFR 170 Query: 187 SILKYLVVRSGLAALIATHN-HDLASQMDRQITIRDGMIA 225 ++L L +++TH D+ S ++ + G + Sbjct: 171 NLLSELG--EDRIVILSTHIVEDVESLCNQVAVLNKGKLV 208 >gnl|CDD|33900 COG4148, ModC, ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]. Length = 352 Score = 93.0 bits (231), Expect = 6e-20 Identities = 56/191 (29%), Positives = 102/191 (53%), Gaps = 13/191 (6%) Query: 38 IVALVSPSGTGKSTILHIAGLLEVPDQGNVIIANQLCNKLSD-DKKSFLRCSK--IGFVY 94 I AL PSG+GK++++++ L PD+G + + ++ L D +K FL K IG+V+ Sbjct: 26 ITALFGPSGSGKTSLINMIAGLTRPDEGRIELNGRV---LVDAEKGIFLPPEKRRIGYVF 82 Query: 95 QEHRLLMDFSVIENIIFPQIIAGINHKTAYQRAMDLLSYMDMSQYANRRSSDISGGEQQR 154 Q+ RL ++V N+ + K+ + L++ + + +R +SGGE+QR Sbjct: 83 QDARLFPHYTVRGNLRYGM------WKSMRAQFDQLVALLGIEHLLDRYPGTLSGGEKQR 136 Query: 155 VAICRAIANKPLIILADEPTGNLDLKTAQQVFSILKYLVVRSGLAALIATHNHDLASQM- 213 VAI RA+ P ++L DEP +LDL +++ L+ L + L +H+ D ++ Sbjct: 137 VAIGRALLTAPELLLMDEPLASLDLPRKREILPYLERLRDEINIPILYVSHSLDEVLRLA 196 Query: 214 DRQITIRDGMI 224 DR + + +G + Sbjct: 197 DRVVVLENGKV 207 >gnl|CDD|73178 COG4608, AppF, ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]. Length = 268 Score = 92.6 bits (230), Expect = 8e-20 Identities = 56/232 (24%), Positives = 101/232 (43%), Gaps = 48/232 (20%) Query: 3 SAEVLLLQNVKHSYR-----QVGKPFPVLENVHLSLKKGEIVALVSPSGTGKSTILHIAG 57 +L ++N+K + + ++ V S+K+GE + LV SG GKST+ + Sbjct: 1 MEPLLEVKNLKKYFPVGKGFGKKRYVKAVDGVSFSIKEGETLGLVGESGCGKSTLGRLIL 60 Query: 58 LLEVPDQGNVIIANQLCNKLSDDKKSFLRCSKIGFVYQEHRLLMDFSVIENIIFPQIIAG 117 LE P G ++ + KLS +++ Sbjct: 61 GLEEPTSGEILFEGKDITKLSKEER----------------------------------- 85 Query: 118 INHKTAYQRAMDLLSYMDMSQ-YANRRSSDISGGEQQRVAICRAIANKPLIILADEPTGN 176 +R ++LL + + + + R ++SGG++QR+ I RA+A P +I+ADEP Sbjct: 86 ------RERVLELLEKVGLPEEFLYRYPHELSGGQRQRIGIARALALNPKLIVADEPVSA 139 Query: 177 LDLKTAQQVFSILKYLVVRSGLAALIATHNHDLASQM-DRQITIRDGMIADL 227 LD+ Q+ ++LK L GL L +H+ + + DR + G I ++ Sbjct: 140 LDVSVQAQILNLLKDLQEELGLTYLFISHDLSVVRYISDRIAVMYLGKIVEI 191 >gnl|CDD|73013 cd03254, ABCC_Glucan_exporter_like, Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.. Length = 229 Score = 92.6 bits (230), Expect = 9e-20 Identities = 62/220 (28%), Positives = 106/220 (48%), Gaps = 15/220 (6%) Query: 10 QNVKHSYRQVGKPFPVLENVHLSLKKGEIVALVSPSGTGKSTILHIAGLLEVPDQGNVII 69 +NV SY + PVL++++ S+K GE VA+V P+G GK+T++++ P +G ++I Sbjct: 6 ENVNFSYD---EKKPVLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDPQKGQILI 62 Query: 70 ANQLCNKLSDDKKSFLRCSKIGFVYQEHRLLMDFSVIENIIFPQIIAG---INHKTAYQR 126 + D + LR S IG V Q+ L +++ENI + A + Sbjct: 63 DGI---DIRDISRKSLR-SMIGVVLQDTFLFSG-TIMENIRLGRPNATDEEVIEAAKEAG 117 Query: 127 AMDLLSYM--DMSQYANRRSSDISGGEQQRVAICRAIANKPLIILADEPTGNLDLKTAQQ 184 A D + + ++S GE+Q +AI RA+ P I++ DE T N+D +T + Sbjct: 118 AHDFIMKLPNGYDTVLGENGGNLSQGERQLLAIARAMLRDPKILILDEATSNIDTETEKL 177 Query: 185 VFSILKYLVVRSGLAALIATHNHDLASQMDRQITIRDGMI 224 + L+ L G ++I H D+ + + DG I Sbjct: 178 IQEALEKL--MKGRTSIIIAHRLSTIKNADKILVLDDGKI 215 >gnl|CDD|73012 cd03253, ABCC_ATM1_transporter, ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.. Length = 236 Score = 92.2 bits (229), Expect = 1e-19 Identities = 69/223 (30%), Positives = 104/223 (46%), Gaps = 15/223 (6%) Query: 9 LQNVKHSYRQVGKPFPVLENVHLSLKKGEIVALVSPSGTGKSTILHIAGLLEVPDQGNVI 68 +NV +Y PVL++V ++ G+ VA+V PSG+GKSTIL + G+++ Sbjct: 3 FENVTFAYDP---GRPVLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYDVSSGSIL 59 Query: 69 IANQLCNKLSDDKKSFLRCSKIGFVYQEHRLLMDFSVIENIIFPQIIAG-INHKTAYQRA 127 I Q + + LR IG V Q+ L D ++ NI + + A A + A Sbjct: 60 IDGQ---DIREVTLDSLR-RAIGVVPQDTVLFND-TIGYNIRYGRPDATDEEVIEAAKAA 114 Query: 128 MDLLSYMDMSQ-YANR---RSSDISGGEQQRVAICRAIANKPLIILADEPTGNLDLKTAQ 183 M Y R +SGGE+QRVAI RAI P I+L DE T LD T + Sbjct: 115 QIHDKIMRFPDGYDTIVGERGLKLSGGEKQRVAIARAILKNPPILLLDEATSALDTHTER 174 Query: 184 QVFSILKYLVVRSGLAALIATHNHDLASQMDRQITIRDGMIAD 226 ++ + L+ V G ++ H D+ I ++DG I + Sbjct: 175 EIQAALR--DVSKGRTTIVIAHRLSTIVNADKIIVLKDGRIVE 215 >gnl|CDD|33632 COG3840, ThiQ, ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]. Length = 231 Score = 91.9 bits (228), Expect = 1e-19 Identities = 52/201 (25%), Positives = 98/201 (48%), Gaps = 17/201 (8%) Query: 31 LSLKKGEIVALVSPSGTGKSTILHIAGLLEVPDQGNVIIANQLCNKLSDDKKSFLRCSKI 90 L++ GEIVA++ PSG GKST+L++ E P G ++I ++ + Sbjct: 20 LTVPAGEIVAILGPSGAGKSTLLNLIAGFETPASGEILINGVDHTASPPAERP------V 73 Query: 91 GFVYQEHRLLMDFSVIENIIFPQIIAGIN-----HKTAYQRAMDLLSYMDMSQYANRRSS 145 ++QE+ L +V +NI G++ + ++ + + ++ + R Sbjct: 74 SMLFQENNLFAHLTVAQNIGL-----GLSPGLKLNAEQREKVEAAAAQVGLAGFLKRLPG 128 Query: 146 DISGGEQQRVAICRAIANKPLIILADEPTGNLDLKTAQQVFSILKYLVVRSGLAALIATH 205 ++SGG++QRVA+ R + + I+L DEP LD ++ +++ L + L+ TH Sbjct: 129 ELSGGQRQRVALARCLVREQPILLLDEPFSALDPALRAEMLALVSQLCDERKMTLLMVTH 188 Query: 206 N-HDLASQMDRQITIRDGMIA 225 + D A DR + + +G IA Sbjct: 189 HPEDAARIADRVVFLDNGRIA 209 >gnl|CDD|35279 KOG0056, KOG0056, KOG0056, Heavy metal exporter HMT1, ABC superfamily [Inorganic ion transport and metabolism]. Length = 790 Score = 91.6 bits (227), Expect = 1e-19 Identities = 66/210 (31%), Positives = 101/210 (48%), Gaps = 16/210 (7%) Query: 24 PVLENVHLSLKKGEIVALVSPSGTGKSTILHIAGLLEVPDQGNVIIANQLCNKLSDDKKS 83 PVL ++ +++ G+ VALV PSG GKSTI+ + + G++ I Q + + +S Sbjct: 552 PVLSDISFTVQPGKTVALVGPSGAGKSTIMRLLFRFFDVNSGSITIDGQ---DIRNVTQS 608 Query: 84 FLRCSKIGFVYQEHRLLMDFSVIENIIFPQIIAGINHKTAYQRAMDL----LSYMDMSQY 139 LR S IG V Q+ L D +++ NI + + A A +A + L + + Y Sbjct: 609 SLR-SSIGVVPQDTVLFND-TILYNIRYAKPSASNEEVYAAAKAAQIHDRILQFPE--GY 664 Query: 140 ANR---RSSDISGGEQQRVAICRAIANKPLIILADEPTGNLDLKTAQQVFSILKYLVVRS 196 R R +SGGE+QRVAI R I P IIL DE T LD T + + + L L + Sbjct: 665 NTRVGERGLKLSGGEKQRVAIARTILKAPSIILLDEATSALDTNTERAIQAALARLC--A 722 Query: 197 GLAALIATHNHDLASQMDRQITIRDGMIAD 226 ++ H D + I +G I + Sbjct: 723 NRTTIVVAHRLSTIVNADLILVISNGRIVE 752 >gnl|CDD|35280 KOG0057, KOG0057, KOG0057, Mitochondrial Fe/S cluster exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]. Length = 591 Score = 91.8 bits (228), Expect = 1e-19 Identities = 57/210 (27%), Positives = 101/210 (48%), Gaps = 19/210 (9%) Query: 24 PVLENVHLSLKKGEIVALVSPSGTGKSTILH-IAGLLEVPDQGNVIIANQLCNKLSDDKK 82 VL+ V ++ KGE VA+V +G+GKSTIL + + G+++I Q + + Sbjct: 366 KVLKGVSFTIPKGEKVAIVGSNGSGKSTILRLLLRFFD--YSGSILIDGQ---DIKEVSL 420 Query: 83 SFLRCSKIGFVYQEHRLLMDFSVIENIIFPQIIAGINHKTAYQRAM-----DLLSYMD-- 135 LR IG V Q+ +L + +++ NI + A + + D++S + Sbjct: 421 ESLR-QSIGVVPQDS-VLFNDTILYNIKYGNPSAS--DEEVVEACKRAGLHDVISRLPDG 476 Query: 136 MSQYANRRSSDISGGEQQRVAICRAIANKPLIILADEPTGNLDLKTAQQVFSILKYLVVR 195 R +SGGE+QRV++ RA I+L DE T LD +T +++ ++ ++ Sbjct: 477 YQTLVGERGLMLSGGEKQRVSLARAFLKDAPILLLDEATSALDSETEREILDMIMDVM-- 534 Query: 196 SGLAALIATHNHDLASQMDRQITIRDGMIA 225 SG ++ H DL D+ I + +G + Sbjct: 535 SGRTVIMIVHRLDLLKDFDKIIVLDNGTVK 564 >gnl|CDD|35281 KOG0058, KOG0058, KOG0058, Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]. Length = 716 Score = 91.6 bits (227), Expect = 2e-19 Identities = 66/226 (29%), Positives = 105/226 (46%), Gaps = 17/226 (7%) Query: 9 LQNVKHSYRQVGKPFPVLENVHLSLKKGEIVALVSPSGTGKSTILHIAGLLEVPDQGNVI 68 ++V +Y PVL+N+ +++ GE+VALV PSG+GKSTI + P G ++ Sbjct: 468 FEDVSFAYPT-RPDVPVLKNLSFTIRPGEVVALVGPSGSGKSTIASLLLRFYDPTSGRIL 526 Query: 69 IANQLCNKLSDDKKSFLRCSKIGFVYQEHRLLMDFSVIENIIFPQIIAGINH-----KTA 123 + +SD +LR KIG V QE +L S+ ENI + A K A Sbjct: 527 LDGV---PISDINHKYLR-RKIGLVGQE-PVLFSGSIRENIAYGLDNATDEEIEAAAKMA 581 Query: 124 YQRAMDLLSYMDMSQYAN--RRSSDISGGEQQRVAICRAIANKPLIILADEPTGNLDLKT 181 A + ++ + S +SGG++QR+AI RA+ P +++ DE T LD ++ Sbjct: 582 N--AHEFITNFPDGYNTVVGEKGSQLSGGQKQRIAIARALLRNPRVLILDEATSALDAES 639 Query: 182 AQQVFSILKYLVVRSGLAALIATHNHDLASQMDRQITIRDGMIADL 227 V L L G L+ H D+ + I G + ++ Sbjct: 640 EYLVQEALDRL--MQGRTVLVIAHRLSTVRHADQIVVIDKGRVVEM 683 >gnl|CDD|30834 COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]. Length = 530 Score = 90.3 bits (224), Expect = 3e-19 Identities = 60/243 (24%), Positives = 104/243 (42%), Gaps = 54/243 (22%) Query: 5 EVLLLQNVKHSYRQVGKPFPVLENVHLSLKKGEIVALVSPSGTGKSTILHIAGLLEVPDQ 64 ++ L+N+ +Y P+LENV L+L GE + LV +G GKST+L I PD Sbjct: 2 SMITLENLSLAYGDR----PLLENVSLTLNPGERIGLVGRNGAGKSTLLKILAGELEPDS 57 Query: 65 GNVIIANQLCNKLSDDKKSFLRCSKIGFVYQEHRLLMDFSVIENII-------------- 110 G V L ++G++ QE L + +V++ +I Sbjct: 58 GEVTRPKGL---------------RVGYLSQEPPLDPEKTVLDYVIEGFGELRELLAELE 102 Query: 111 ----------------FPQIIAGINHKTAYQRAMDLLSYMDMSQYANRRSSDISGGEQQR 154 ++ ++ T RA + L + +R S +SGG ++R Sbjct: 103 EAYALLADPDDELLAELEALLEELDGWTLEARAEEALLGLGFPD-EDRPVSSLSGGWRRR 161 Query: 155 VAICRAIANKPLIILADEPTGNLDLKTAQQVFSILKYLVVRSGLAALIATHNHDLASQMD 214 VA+ RA+ +P ++L DEPT +LDL++ + + YL G ++ +H+ + Sbjct: 162 VALARALLEEPDLLLLDEPTNHLDLESIEWLED---YLKRYPG-TVIVVSHDRYFLDNVA 217 Query: 215 RQI 217 I Sbjct: 218 THI 220 Score = 79.1 bits (195), Expect = 1e-15 Identities = 52/217 (23%), Positives = 95/217 (43%), Gaps = 36/217 (16%) Query: 6 VLLLQNVKHSYRQVGKPFPVLENVHLSLKKGEIVALVSPSGTGKSTILH-IAGLLEVPDQ 64 VL +NV Y +L+++ + +G+ +A+V P+G GKST+L +AG L P Sbjct: 321 VLEFENVSKGY---DGGRLLLKDLSFRIDRGDRIAIVGPNGAGKSTLLKLLAGELG-PLS 376 Query: 65 GNVIIANQLCNKLSDDKKSFLRCSKIGFVYQEH-RLLMDFSVIENI--IFPQIIAGINHK 121 G V + + KIG+ Q L D +V+E + FP Sbjct: 377 GTVKVGETV---------------KIGYFDQHRDELDPDKTVLEELSEGFPDGD------ 415 Query: 122 TAYQRAMDLLSYMDMSQ-YANRRSSDISGGEQQRVAICRAIANKPLIILADEPTGNLDLK 180 Q L + + +SGGE+ R+ + + + P ++L DEPT +LD++ Sbjct: 416 --EQEVRAYLGRFGFTGEDQEKPVGVLSGGEKARLLLAKLLLQPPNLLLLDEPTNHLDIE 473 Query: 181 TAQQVFSILKYLVVRSGLAALIATHNHDLASQMDRQI 217 + + + + L+ G L+ +H+ ++ +I Sbjct: 474 SLEA---LEEALLDFEG-TVLLVSHDRYFLDRVATRI 506 >gnl|CDD|34235 COG4604, CeuD, ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism]. Length = 252 Score = 90.3 bits (224), Expect = 4e-19 Identities = 56/220 (25%), Positives = 104/220 (47%), Gaps = 11/220 (5%) Query: 9 LQNVKHSYRQVGKPFPVLENVHLSLKKGEIVALVSPSGTGKSTILHIAGLLEVPDQGNVI 68 ++NV SY VL++V L + KG I +++ P+G GKST+L + L D G + Sbjct: 4 IENVSKSYGTK----VVLDDVSLDIPKGGITSIIGPNGAGKSTLLSMMSRLLKKDSGEIT 59 Query: 69 IANQLCNKLSDDKKSFLRCSKIGFVYQEHRLLMDFSVIENIIFPQIIAGINHKTAYQRAM 128 I + + K+ + QE+ + +V + + F + T R + Sbjct: 60 IDGLELTSTPSKELA----KKLSILKQENHINSRLTVRDLVGFGRFPYSQGRLTKEDRRI 115 Query: 129 --DLLSYMDMSQYANRRSSDISGGEQQRVAICRAIANKPLIILADEPTGNLDLKTAQQVF 186 + + Y+ + ++R ++SGG++QR I +A +L DEP NLD+K + Q+ Sbjct: 116 INEAIEYLHLEDLSDRYLDELSGGQRQRAFIAMVLAQDTDYVLLDEPLNNLDMKHSVQIM 175 Query: 187 SILKYLVVRSGLAALIATHNHDLASQ-MDRQITIRDGMIA 225 IL+ L G ++ H+ + AS D + +++G + Sbjct: 176 KILRRLADELGKTIVVVLHDINFASCYSDHIVALKNGKVV 215 >gnl|CDD|73008 cd03249, ABC_MTABC3_MDL1_MDL2, MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.. Length = 238 Score = 89.8 bits (223), Expect = 5e-19 Identities = 62/226 (27%), Positives = 102/226 (45%), Gaps = 19/226 (8%) Query: 9 LQNVKHSYRQVGKP-FPVLENVHLSLKKGEIVALVSPSGTGKSTILHIAGLLEVPDQGNV 67 +NV Y +P P+L+ + L++ G+ VALV SG GKST++ + P G + Sbjct: 3 FKNVSFRYPS--RPDVPILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYDPTSGEI 60 Query: 68 IIANQLCNKLSDDKKSFLRCSKIGFVYQEHRLLMDFSVIENIIF-------PQIIAGINH 120 ++ L+ +LR S+IG V QE +L D ++ ENI + ++ Sbjct: 61 LLDGVDIRDLN---LRWLR-SQIGLVSQE-PVLFDGTIAENIRYGKPDATDEEVEEAAKK 115 Query: 121 KTAYQRAMDLLSYMDMSQYANRRSSDISGGEQQRVAICRAIANKPLIILADEPTGNLDLK 180 + M L D R S +SGG++QR+AI RA+ P I+L DE T LD + Sbjct: 116 ANIHDFIMSLPDGYD--TLVGERGSQLSGGQKQRIAIARALLRNPKILLLDEATSALDAE 173 Query: 181 TAQQVFSILKYLVVRSGLAALIATHNHDLASQMDRQITIRDGMIAD 226 + + V L G ++ H D +++G + + Sbjct: 174 SEKLVQEALDR--AMKGRTTIVIAHRLSTIRNADLIAVLQNGQVVE 217 >gnl|CDD|73027 cd03268, ABC_BcrA_bacitracin_resist, The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.. Length = 208 Score = 89.5 bits (222), Expect = 6e-19 Identities = 52/212 (24%), Positives = 96/212 (45%), Gaps = 15/212 (7%) Query: 17 RQVGKPF---PVLENVHLSLKKGEIVALVSPSGTGKSTILHIAGLLEVPDQGNVIIANQL 73 + K + VL+++ L +KKGEI + P+G GK+T + I L PD G + + Sbjct: 4 NDLTKTYGKKRVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPDSGEITFDGKS 63 Query: 74 CNKLSDDKKSFLRCSKIGFVYQEHRLLMDFSVIENIIFPQIIAGINHKTAYQRAMDLLSY 133 K + + +IG + + + + EN+ + GI K R ++L Sbjct: 64 YQKNIEALR------RIGALIEAPGFYPNLTARENLRLLARLLGIRKK----RIDEVLDV 113 Query: 134 MDMSQYANRRSSDISGGEQQRVAICRAIANKPLIILADEPTGNLDLKTAQQVFSILKYLV 193 + + A ++ S G +QR+ I A+ P +++ DEPT LD +++ ++ L Sbjct: 114 VGLKDSAKKKVKGFSLGMKQRLGIALALLGNPDLLILDEPTNGLDPDGIKELRELILSL- 172 Query: 194 VRSGLAALIATHN-HDLASQMDRQITIRDGMI 224 G+ LI++H ++ DR I G + Sbjct: 173 RDQGITVLISSHLLSEIQKVADRIGIINKGKL 204 >gnl|CDD|73004 cd03245, ABCC_bacteriocin_exporters, ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.. Length = 220 Score = 89.1 bits (221), Expect = 9e-19 Identities = 68/231 (29%), Positives = 116/231 (50%), Gaps = 29/231 (12%) Query: 9 LQNVKHSYRQVGKPFPVLENVHLSLKKGEIVALVSPSGTGKSTILH-IAGLLEVPDQGNV 67 +NV SY + P L+NV L+++ GE VA++ G+GKST+L +AGL + P G+V Sbjct: 5 FRNVSFSYP--NQEIPALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYK-PTSGSV 61 Query: 68 IIANQLCNKLSDDKKSFLRCSKIGFVYQEHRLLMDFSVIENIIFPQIIAGINHKTAYQRA 127 ++ +L + LR IG+V Q+ L ++ +NI +A +R Sbjct: 62 LLDGTDIRQLD---PADLR-RNIGYVPQDVTLFYG-TLRDNITLGAPLA------DDERI 110 Query: 128 MDLLSYMDMSQYANR-----------RSSDISGGEQQRVAICRAIANKPLIILADEPTGN 176 + ++ + N+ R +SGG++Q VA+ RA+ N P I+L DEPT Sbjct: 111 LRAAELAGVTDFVNKHPNGLDLQIGERGRGLSGGQRQAVALARALLNDPPILLLDEPTSA 170 Query: 177 LDLKTAQQVFSILKYLVVRSGLAALIATHNHDLASQMDRQITIRDG-MIAD 226 +D+ + +++ L+ L+ +I TH L +DR I + G ++AD Sbjct: 171 MDMNSEERLKERLRQLL--GDKTLIIITHRPSLLDLVDRIIVMDSGRIVAD 219 >gnl|CDD|33864 COG4107, PhnK, ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]. Length = 258 Score = 88.8 bits (220), Expect = 1e-18 Identities = 65/237 (27%), Positives = 107/237 (45%), Gaps = 16/237 (6%) Query: 1 MDSAEVLLLQNVKHSY-RQVGKPFPVLENVHLSLKKGEIVALVSPSGTGKSTILHIAGLL 59 M +L + + Y G +V L GE++ +V SG+GK+T+L Sbjct: 1 MMDKPLLSVSGLSKLYGPGKG-----CRDVSFDLYPGEVLGIVGESGSGKTTLLKCISGR 55 Query: 60 EVPDQGNVIIANQLCN-----KLSDDKKSFLRCSKIGFVYQEHR--LLMDFSVIENIIFP 112 PD G V + +S+ ++ L ++ GFV+Q R L M S NI Sbjct: 56 LTPDAGTVTYRMRDGQPRDLYTMSEAERRRLLRTEWGFVHQNPRDGLRMQVSAGGNIGER 115 Query: 113 QIIAGINH-KTAYQRAMDLLSYMDMSQ-YANRRSSDISGGEQQRVAICRAIANKPLIILA 170 + G H A D L +++ + SGG QQR+ I R + +P ++ Sbjct: 116 LMAIGARHYGNIRAEAQDWLEEVEIDLDRIDDLPRTFSGGMQQRLQIARNLVTRPRLVFM 175 Query: 171 DEPTGNLDLKTAQQVFSILKYLVVRSGLAALIATHNHDLASQM-DRQITIRDGMIAD 226 DEPTG LD+ ++ +L+ LV GLA +I TH+ +A + DR + ++ G + + Sbjct: 176 DEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHDLAVARLLADRLMVMKQGQVVE 232 >gnl|CDD|72993 cd03234, ABCG_White, The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in macrophages, hepatocytes, and intestinal mucosa cells. ABCG1 (ABC8), the human homolog of the Drosophila white gene is induced in monocyte-derived macrophages during cholesterol influx mediated by acetylated low-density lipoprotein. It is possible that human ABCG1 forms heterodimers with several heterologous partners.. Length = 226 Score = 88.7 bits (220), Expect = 1e-18 Identities = 54/207 (26%), Positives = 95/207 (45%), Gaps = 15/207 (7%) Query: 6 VLLLQNVKHSYRQVGKPFPVLENVHLSLKKGEIVALVSPSGTGKSTILH-IAGLLEVPD- 63 VL +V + K +L +V L ++ G+++A++ SG+GK+T+L I+G +E Sbjct: 3 VLPWWDVGLKAKNWNKYARILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGT 62 Query: 64 -QGNVIIANQLCNKLSDDKKSFLRCSKIGFVYQEHRLLMDFSVIENIIFPQIIAGINHKT 122 G ++ Q F +C + +V Q+ LL +V E + + I+ + Sbjct: 63 TSGQILFNGQ-----PRKPDQFQKC--VAYVRQDDILLPGLTVRETLTYTAILRLPRKSS 115 Query: 123 AYQRAM----DLLSYMDMSQYANRRSSDISGGEQQRVAICRAIANKPLIILADEPTGNLD 178 R LL + +++ ISGGE++RV+I + P +++ DEPT LD Sbjct: 116 DAIRKKRVEDVLLRDLALTRIGGNLVKGISGGERRRVSIAVQLLWDPKVLILDEPTSGLD 175 Query: 179 LKTAQQVFSILKYLVVRSGLAALIATH 205 TA + S L L R ++ H Sbjct: 176 SFTALNLVSTLSQL-ARRNRIVILTIH 201 >gnl|CDD|34201 COG4559, COG4559, ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]. Length = 259 Score = 88.4 bits (219), Expect = 1e-18 Identities = 65/221 (29%), Positives = 101/221 (45%), Gaps = 18/221 (8%) Query: 15 SYRQVGKPFPVLENVHLSLKKGEIVALVSPSGTGKSTIL-HIAGLLEVPDQGNVIIANQL 73 SY G+ +L+ V L L+ GE++A++ P+G GKST+L ++G L PD G V + Sbjct: 8 SYSLAGRR--LLDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGELS-PDSGEVTLNGVP 64 Query: 74 CNKLSDDKKSFLRCSKIGFVYQEHRLLMDFSVIENIIFPQIIAGINHKTAYQR--AMDLL 131 N ++ + R + Q L F+V E + +I + A L Sbjct: 65 LNSWPPEELARHR----AVLPQNSSLAFPFTVQEVVQMGRIPHRSGREPEEDERIAAQAL 120 Query: 132 SYMDMSQYANRRSSDISGGEQQRVAICRAIAN------KPLIILADEPTGNLDLKTAQQV 185 + D+S A R +SGGEQQRV + R +A + DEPT LD+ Sbjct: 121 AATDLSGLAGRDYRTLSGGEQQRVQLARVLAQLWPPVPSGRWLFLDEPTSALDIAHQHHT 180 Query: 186 FSILKYLVVRSGLAALIATHNHDLASQM-DRQITIRDGMIA 225 + + L R G A L H+ +LA+Q DR + + G + Sbjct: 181 LRLARQL-AREGGAVLAVLHDLNLAAQYADRIVLLHQGRVI 220 >gnl|CDD|73005 cd03246, ABCC_Protease_Secretion, This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substrates ranges from inorganic ions, nutrients such as amino acids, sugars, or peptides, hydrophobic drugs, to large polypeptides, such as HlyA.. Length = 173 Score = 88.3 bits (219), Expect = 1e-18 Identities = 58/219 (26%), Positives = 97/219 (44%), Gaps = 47/219 (21%) Query: 7 LLLQNVKHSYRQVGKPFPVLENVHLSLKKGEIVALVSPSGTGKSTILH-IAGLLEVPDQG 65 L ++NV S+R G PVL NV S++ GE +A++ PSG+GKST+ I GLL P G Sbjct: 1 LEVENV--SFRYPGAEPPVLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLR-PTSG 57 Query: 66 NVIIANQLCNKLSDDKKSFLRCSKIGFVYQEHRLLMDFSVIENIIFPQIIAGINHKTAYQ 125 V + ++ D +G++ Q+ L S+ ENI Sbjct: 58 RVRLDGADISQW--DPNELGDH--VGYLPQDDELF-SGSIAENI---------------- 96 Query: 126 RAMDLLSYMDMSQYANRRSSDISGGEQQRVAICRAIANKPLIILADEPTGNLDLKTAQQV 185 +SGG++QR+ + RA+ P I++ DEP +LD++ + + Sbjct: 97 ---------------------LSGGQRQRLGLARALYGNPRILVLDEPNSHLDVEGERAL 135 Query: 186 FSILKYLVVRSGLAALIATHNHDLASQMDRQITIRDGMI 224 + L G ++ H + + DR + + DG + Sbjct: 136 NQAIAALKAA-GATRIVIAHRPETLASADRILVLEDGRV 173 >gnl|CDD|35284 KOG0061, KOG0061, KOG0061, Transporter, ABC superfamily (Breast cancer resistance protein) [Secondary metabolites biosynthesis, transport and catabolism]. Length = 613 Score = 88.5 bits (219), Expect = 1e-18 Identities = 60/214 (28%), Positives = 110/214 (51%), Gaps = 21/214 (9%) Query: 25 VLENVHLSLKKGEIVALVSPSGTGKSTILHI-AGLLE--VPDQGNVIIANQLCNKLSDDK 81 +L+ V + K GE++A++ PSG+GK+T+L+ AG L + G +++ N D Sbjct: 45 ILKGVSGTAKPGELLAIMGPSGSGKTTLLNALAGRLNGGLKLSGEILL-----NGRPRDS 99 Query: 82 KSFLRCSKIGFVYQEHRLLMDFSVIENIIFPQIIAGINHKTAYQRAM---DLLSYMDMSQ 138 +SF + S G+V Q+ LL +V E + F ++ + + ++ +++S + + + Sbjct: 100 RSFRKIS--GYVQQDDVLLPTLTVRETLRFSALLRLPSSLSKEEKRERVEEVISELGLEK 157 Query: 139 YANRRSSD-----ISGGEQQRVAICRAIANKPLIILADEPTGNLDLKTAQQVFSILKYLV 193 A+ + +SGGE++RV+I + P I+ DEPT LD +A QV +LK L Sbjct: 158 CADTLIGNPGIRGLSGGERKRVSIALELLTDPSILFLDEPTSGLDSFSALQVVQLLKRL- 216 Query: 194 VRSGLAALIATHN--HDLASQMDRQITIRDGMIA 225 RSG + H +L D+ + + +G + Sbjct: 217 ARSGRTVICTIHQPSSELFELFDKLLLLSEGEVV 250 >gnl|CDD|31314 COG1117, PstB, ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]. Length = 253 Score = 88.3 bits (219), Expect = 2e-18 Identities = 51/215 (23%), Positives = 99/215 (46%), Gaps = 18/215 (8%) Query: 1 MDSAEVLLLQNVKHSYRQVGKPFPVLENVHLSLKKGEIVALVSPSGTGKSTILHIAGLL- 59 + ++++ Y L++++L + K ++ AL+ PSG GKST+L + Sbjct: 2 TMKIPAIEVRDLNLYYGD----KHALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMN 57 Query: 60 ----EVPDQGNVIIANQLCNKLSDDKKSFLRCSKIGFVYQEHRLLMDFSVIENIIFPQII 115 +G V++ + D R ++G V+Q+ S+ +N+ + + Sbjct: 58 DLIPGARVEGEVLLDGKNIYDPKVDVVELRR--RVGMVFQKPNPF-PMSIYDNVAYGLRL 114 Query: 116 AGINHKTAYQRAMDLLS----YMDMSQYANRRSSDISGGEQQRVAICRAIANKPLIILAD 171 GI K + L + ++ ++ + +SGG+QQR+ I RA+A KP ++L D Sbjct: 115 HGIKDKELDEIVESSLKKAALWDEVKDRLHKSALGLSGGQQQRLCIARALAVKPEVLLMD 174 Query: 172 EPTGNLDLKTAQQVFSILKYLVVRSGLAALIATHN 206 EPT LD + ++ ++ L + +I THN Sbjct: 175 EPTSALDPISTLKIEELITEL--KKKYTIVIVTHN 207 >gnl|CDD|33892 COG4136, COG4136, ABC-type uncharacterized transport system, ATPase component [General function prediction only]. Length = 213 Score = 86.9 bits (215), Expect = 4e-18 Identities = 53/188 (28%), Positives = 90/188 (47%), Gaps = 14/188 (7%) Query: 25 VLENVHLSLKKGEIVALVSPSGTGKSTILHIAGLLEVPD---QGNVIIANQLCNKLSDDK 81 +L NV+ ++ KGEIV L+ PSG GKST+L G + + Q + L + Sbjct: 17 LLANVNFTIAKGEIVTLMGPSGCGKSTLLSWMIGALAGQFSCTGELWLNEQRLDMLPAAQ 76 Query: 82 KSFLRCSKIGFVYQEHRLLMDFSVIENIIF--PQIIAGINHKTAYQRAMDLLSYMDMSQY 139 + +IG ++Q+ L SV +N++F P + G + A A L + Sbjct: 77 R------QIGILFQDALLFPHLSVGQNLLFALPATLKGNARRNA---ANAALERSGLDGA 127 Query: 140 ANRRSSDISGGEQQRVAICRAIANKPLIILADEPTGNLDLKTAQQVFSILKYLVVRSGLA 199 ++ + +SGG++ RVA+ RA+ +P +L DEP LD+ Q + V +G+ Sbjct: 128 FHQDPATLSGGQRARVALLRALLAQPKALLLDEPFSRLDVALRDQFRQWVFSEVRAAGIP 187 Query: 200 ALIATHNH 207 + TH+ Sbjct: 188 TVQVTHDL 195 >gnl|CDD|72975 cd03216, ABC_Carb_Monos_I, This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.. Length = 163 Score = 86.6 bits (215), Expect = 5e-18 Identities = 52/220 (23%), Positives = 89/220 (40%), Gaps = 60/220 (27%) Query: 7 LLLQNVKHSYRQVGKPFPVLENVHLSLKKGEIVALVSPSGTGKSTILHIAGLLEVPDQGN 66 L L+ + + V L+ V LS+++GE+ AL+ +G GKST++ I L PD G Sbjct: 1 LELRGITKRFGGV----KALDGVSLSVRRGEVHALLGENGAGKSTLMKILSGLYKPDSGE 56 Query: 67 VIIANQLCNKLSDDKKSFLRCSKIGFVYQEHRLLMDFSVIENIIFPQIIAGINHKTAYQR 126 +++ + + S R + I VYQ Sbjct: 57 ILVDGKEVSFASPRDA---RRAGIAMVYQ------------------------------- 82 Query: 127 AMDLLSYMDMSQYANRRSSDISGGEQQRVAICRAIANKPLIILADEPTGNLDLKTAQQVF 186 +S GE+Q V I RA+A +++ DEPT L +++F Sbjct: 83 --------------------LSVGERQMVEIARALARNARLLILDEPTAALTPAEVERLF 122 Query: 187 SILKYLVVRSGLAALIATHNHDLASQM-DRQITIRDGMIA 225 +++ L G+A + +H D ++ DR +RDG + Sbjct: 123 KVIRRL-RAQGVAVIFISHRLDEVFEIADRVTVLRDGRVV 161 >gnl|CDD|31316 COG1119, ModF, ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]. Length = 257 Score = 86.1 bits (213), Expect = 7e-18 Identities = 54/215 (25%), Positives = 92/215 (42%), Gaps = 20/215 (9%) Query: 24 PVLENVHLSLKKGEIVALVSPSGTGKSTILHIAGLLEVPDQGNVIIANQLCNKLSDDKKS 83 +L ++ + GE A+V P+G GK+T+L + P G+V + + + Sbjct: 45 KILGDLSWQVNPGEHWAIVGPNGAGKTTLLSLLTGEHPPSSGDVTLLGR--RFGKGETIF 102 Query: 84 FLRCSKIGFVYQEHRLLMDFSVIENIIFPQIIA-------GINH----KTAYQRAMDLLS 132 LR +IG V L F V E + ++ GI A LL Sbjct: 103 ELR-KRIGLV--SSELHERFRVRETVR--DVVLSGFFASIGIYQEDLTAEDLAAAQWLLE 157 Query: 133 YMDMSQYANRRSSDISGGEQQRVAICRAIANKPLIILADEPTGNLDLKTAQQVFSILKYL 192 + A+R +S GEQ+RV I RA+ P +++ DEP LDL +Q+ + L+ L Sbjct: 158 LLGAKHLADRPFGSLSQGEQRRVLIARALVKDPELLILDEPAQGLDLIAREQLLNRLEEL 217 Query: 193 VVR-SGLAALIATHN-HDLASQMDRQITIRDGMIA 225 A L TH+ ++ ++ +++G + Sbjct: 218 AASPGAPALLFVTHHAEEIPPCFTHRLLLKEGEVV 252 >gnl|CDD|73011 cd03252, ABCC_Hemolysin, The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.. Length = 237 Score = 86.1 bits (213), Expect = 8e-18 Identities = 60/225 (26%), Positives = 110/225 (48%), Gaps = 18/225 (8%) Query: 9 LQNVKHSYRQVGKPFPVLENVHLSLKKGEIVALVSPSGTGKSTILHIAGLLEVPDQGNVI 68 ++V+ Y+ G +L+N+ L +K GE+V +V SG+GKST+ + VP+ G V+ Sbjct: 3 FEHVRFRYKPDGPV--ILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVPENGRVL 60 Query: 69 IANQLCNKLSDDKKSFLRCSKIGFVYQEHRLLMDFSVIENIIFP-------QIIAGINHK 121 + + L+ ++LR ++G V QE+ +L + S+ +NI ++I Sbjct: 61 VDG---HDLALADPAWLR-RQVGVVLQEN-VLFNRSIRDNIALADPGMSMERVIEAAKLA 115 Query: 122 TAYQRAMDLLSYMDMSQYANRRSSDISGGEQQRVAICRAIANKPLIILADEPTGNLDLKT 181 A+ +L D + + +SGG++QR+AI RA+ + P I++ DE T LD ++ Sbjct: 116 GAHDFISELPEGYD--TIVGEQGAGLSGGQRQRIAIARALIHNPRILIFDEATSALDYES 173 Query: 182 AQQVFSILKYLVVRSGLAALIATHNHDLASQMDRQITIRDGMIAD 226 + + + +G +I H DR I + G I + Sbjct: 174 EHAIMRNMHDIC--AGRTVIIIAHRLSTVKNADRIIVMEKGRIVE 216 >gnl|CDD|34862 COG5265, ATM1, ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones]. Length = 497 Score = 85.3 bits (211), Expect = 1e-17 Identities = 61/208 (29%), Positives = 93/208 (44%), Gaps = 12/208 (5%) Query: 24 PVLENVHLSLKKGEIVALVSPSGTGKSTILHIAGLLEVPDQGNVIIANQLCNKLSDDKKS 83 P+L + ++ G+ VA+V SG GKSTIL + + G++ I Q + D + Sbjct: 277 PILNGISFTIPLGKTVAIVGESGAGKSTILRLLFRFYDVNSGSITIDGQ---DIRDVTQQ 333 Query: 84 FLRCSKIGFVYQEHRLLMDFSVIENIIFPQIIAGINHKTAYQRAMDLLSYMD-----MSQ 138 LR IG V Q+ L D ++ NI + + A A A + ++ Sbjct: 334 SLR-RAIGIVPQDTVLFND-TIAYNIKYGRPDATAEEVGAAAEAAQIHDFIQSLPEGYDT 391 Query: 139 YANRRSSDISGGEQQRVAICRAIANKPLIILADEPTGNLDLKTAQQVFSILKYLVVRSGL 198 R +SGGE+QRVAI R I P I++ DE T LD T Q + + L+ V +G Sbjct: 392 GVGERGLKLSGGEKQRVAIARTILKNPPILILDEATSALDTHTEQAIQAALR--EVSAGR 449 Query: 199 AALIATHNHDLASQMDRQITIRDGMIAD 226 L+ H D I + +G I + Sbjct: 450 TTLVIAHRLSTIIDADEIIVLDNGRIVE 477 >gnl|CDD|143798 pfam00005, ABC_tran, ABC transporter. ABC transporters for a large family of proteins responsible for translocation of a variety of compounds across biological membranes. ABC transporters are the largest family of proteins in many completely sequenced bacteria. ABC transporters are composed of two copies of this domain and two copies of a transmembrane domain pfam00664. These four domains may belong to a single polypeptide or belong in different polypeptide chains. Length = 119 Score = 85.1 bits (211), Expect = 1e-17 Identities = 42/127 (33%), Positives = 67/127 (52%), Gaps = 11/127 (8%) Query: 50 STIL-HIAGLLEVPDQGNVIIANQLCNKLSDDKKSFLRCSKIGFVYQEHRLLMDFSVIEN 108 ST+L I GLL+ P G +++ + LS K +IG V+Q+ +L + +V EN Sbjct: 1 STLLKLITGLLQ-PTSGTILLDGEDGTDLSSRK---ALRKRIGVVFQDPQLFPELTVREN 56 Query: 109 IIFPQIIAGINHKTAYQRAMDLLSYMDMSQYANR-RSSDISGGEQQRVAICRAIANKPLI 167 + F + RA + L + + + +R +SGG++QRVAI RA+ KP + Sbjct: 57 LFFGLRDKEAD-----ARAEEALERVGLPDFLDRSPVGTLSGGQKQRVAIARALLKKPKL 111 Query: 168 ILADEPT 174 +L DEPT Sbjct: 112 LLLDEPT 118 >gnl|CDD|35282 KOG0059, KOG0059, KOG0059, Lipid exporter ABCA1 and related proteins, ABC superfamily [Lipid transport and metabolism, General function prediction only]. Length = 885 Score = 84.7 bits (209), Expect = 2e-17 Identities = 49/219 (22%), Positives = 97/219 (44%), Gaps = 8/219 (3%) Query: 7 LLLQNVKHSYRQVGKPFPVLENVHLSLKKGEIVALVSPSGTGKSTILHIAGLLEVPDQGN 66 L+L N+ Y G + + ++ GE L+ +G GK+T + P G Sbjct: 565 LVLNNLSKVY---GGKDGAVRGLSFAVPPGECFGLLGVNGAGKTTTFKMLTGETKPTSGE 621 Query: 67 VIIANQLCNKLSDDKKSFLRCSKIGFVYQEHRLLMDFSVIENIIFPQIIAGINHKTAYQR 126 +I +D ++ + +G+ Q L + + E++ F + G+ Sbjct: 622 ALIKGHDITVSTDFQQVRKQ---LGYCPQFDALWEELTGREHLEFYARLRGLPRSDIGSA 678 Query: 127 AMDLLSYMDMSQYANRRSSDISGGEQQRVAICRAIANKPLIILADEPTGNLDLKTAQQVF 186 LL + + YAN++ SGG ++R++ A+ P +IL DEP+ LD K + ++ Sbjct: 679 IEKLLRLVGLGPYANKQVRTYSGGNKRRLSFAIALIGDPSVILLDEPSTGLDPKARRHLW 738 Query: 187 SILKYLVVRSGLAALIATHNHDLASQMDRQITI-RDGMI 224 I+ L ++G A ++ +H+ + A + + I G + Sbjct: 739 DIIARL-RKNGKAIILTSHSMEEAEALCTRTAIMVIGQL 776 >gnl|CDD|73057 cd03298, ABC_ThiQ_thiamine_transporter, ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.. Length = 211 Score = 84.6 bits (209), Expect = 2e-17 Identities = 53/197 (26%), Positives = 99/197 (50%), Gaps = 9/197 (4%) Query: 31 LSLKKGEIVALVSPSGTGKSTILHIAGLLEVPDQGNVIIANQLCNKLSDDKKSFLRCSKI 90 L+ +GEI A+V PSG+GKST+L++ E P G V+I D + + Sbjct: 19 LTFAQGEITAIVGPSGSGKSTLLNLIAGFETPQSGRVLINGV------DVTAAPPADRPV 72 Query: 91 GFVYQEHRLLMDFSVIENIIFPQIIAGINHKTAYQRAMD-LLSYMDMSQYANRRSSDISG 149 ++QE+ L +V +N+ + G+ ++A++ L+ + ++ R ++SG Sbjct: 73 SMLFQENNLFAHLTVEQNVGL-GLSPGLKLTAEDRQAIEVALARVGLAGLEKRLPGELSG 131 Query: 150 GEQQRVAICRAIANKPLIILADEPTGNLDLKTAQQVFSILKYLVVRSGLAALIATHNHDL 209 GE+QRVA+ R + ++L DEP LD ++ ++ L + + L+ TH + Sbjct: 132 GERQRVALARVLVRDKPVLLLDEPFAALDPALRAEMLDLVLDLHAETKMTVLMVTHQPED 191 Query: 210 ASQM-DRQITIRDGMIA 225 A ++ R + + +G IA Sbjct: 192 AKRLAQRVVFLDNGRIA 208 >gnl|CDD|73007 cd03248, ABCC_TAP, TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.. Length = 226 Score = 84.2 bits (208), Expect = 3e-17 Identities = 64/222 (28%), Positives = 104/222 (46%), Gaps = 15/222 (6%) Query: 9 LQNVKHSYRQVGKP-FPVLENVHLSLKKGEIVALVSPSGTGKSTILHIAGLLEVPDQGNV 67 QNV +Y +P VL++V +L GE+ ALV PSG+GKST++ + P G V Sbjct: 14 FQNVTFAYPT--RPDTLVLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQPQGGQV 71 Query: 68 IIANQLCNKLSDDKKSFLRCSKIGFVYQEHRLLMDFSVIENIIFPQIIAGINHKTAYQR- 126 ++ + +S + +L SK+ V QE +L S+ +NI + + Sbjct: 72 LLDGK---PISQYEHKYLH-SKVSLVGQE-PVLFARSLQDNIAYGLQSCSFECVKEAAQK 126 Query: 127 --AMDLLSYMDMSQY--ANRRSSDISGGEQQRVAICRAIANKPLIILADEPTGNLDLKTA 182 A +S + + S +SGG++QRVAI RA+ P +++ DE T LD ++ Sbjct: 127 AHAHSFISELASGYDTEVGEKGSQLSGGQKQRVAIARALIRNPQVLILDEATSALDAESE 186 Query: 183 QQVFSILKYLVVRSGLAALIATHNHDLASQMDRQITIRDGMI 224 QQV L R + L+ H + D+ + + G I Sbjct: 187 QQVQQALYDWPERRTV--LVIAHRLSTVERADQILVLDGGRI 226 >gnl|CDD|34224 COG4586, COG4586, ABC-type uncharacterized transport system, ATPase component [General function prediction only]. Length = 325 Score = 83.8 bits (207), Expect = 3e-17 Identities = 52/221 (23%), Positives = 98/221 (44%), Gaps = 7/221 (3%) Query: 8 LLQNVKHSYRQVGKPFPVLENVHLSLKKGEIVALVSPSGTGKSTILHIAGLLEVPDQGNV 67 L ++ H + + + ++++ + KGEIV + +G GKST L + L +P G V Sbjct: 22 LKGSLNHFFHRKERSIEAVQDISFEIPKGEIVGFLGANGAGKSTTLKMLTGLLLPTSGKV 81 Query: 68 IIANQLCNKLSDDKKSFLRCSKIGFVY-QEHRLLMDFSVIENIIFPQIIAGINHKTAYQR 126 + + ++ +LR IG V Q+ +L D ++++ ++I I +R Sbjct: 82 RVNGKDP---FRRREEYLR--SIGLVMGQKLQLWWDLPALDSLEVLKLIYEIPDDEFAER 136 Query: 127 AMDLLSYMDMSQYANRRSSDISGGEQQRVAICRAIANKPLIILADEPTGNLDLKTAQQVF 186 L +D+ + +S G++ R + A+ + P ++ DEPT LD+ + Sbjct: 137 LDFLTEILDLEGFLKWPVRKLSLGQRMRAELAAALLHPPKVLFLDEPTVGLDVNAQANIR 196 Query: 187 SILKYLVVRSGLAALIATHN-HDLASQMDRQITIRDGMIAD 226 LK L+ TH D+A+ DR + I G + Sbjct: 197 EFLKEYNEERQATVLLTTHIFDDIATLCDRVLLIDQGQLVF 237 >gnl|CDD|33903 COG4152, COG4152, ABC-type uncharacterized transport system, ATPase component [General function prediction only]. Length = 300 Score = 83.0 bits (205), Expect = 6e-17 Identities = 42/205 (20%), Positives = 93/205 (45%), Gaps = 18/205 (8%) Query: 23 FPVLENVHLSLKKGEIVALVSPSGTGKSTILH-IAGLLEVPDQGNVIIANQLCNKLSDDK 81 ++N+ + GEI L+ P+G GK+T I GLLE P +G + ++ ++ Sbjct: 15 KKAVDNISFEVPPGEIFGLLGPNGAGKTTTFRMILGLLE-PTEGEITWNGGPLSQEIKNR 73 Query: 82 KSFLRCSKIGFVYQEHRLLMDFSVIENIIFPQIIAGINHKTAYQRAMDLLSYMDMSQYAN 141 IG++ +E L +V + + + + G+ ++ L +++ Sbjct: 74 --------IGYLPEERGLYPKMTVEDQLKYLAELKGMPKAEIQKKLQAWLERLEIVGKKT 125 Query: 142 RRSSDISGGEQQRVAICRAIANKPLIILADEPTGNLDLKTAQQVFSILKYLVVR---SGL 198 ++ ++S G QQ++ A+ ++P +++ DEP LD + +LK + G Sbjct: 126 KKIKELSKGNQQKIQFISAVIHEPELLILDEPFSGLDPVNVE----LLKDAIFELKEEGA 181 Query: 199 AALIATHNHDLASQM-DRQITIRDG 222 + ++H + ++ DR + ++ G Sbjct: 182 TIIFSSHRMEHVEELCDRLLMLKKG 206 >gnl|CDD|72972 cd03213, ABCG_EPDR, ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.. Length = 194 Score = 79.0 bits (195), Expect = 9e-16 Identities = 57/185 (30%), Positives = 86/185 (46%), Gaps = 39/185 (21%) Query: 23 FPVLENVHLSLKKGEIVALVSPSGTGKSTILHI-AGLLEVP-DQGNVIIANQLCNKLSDD 80 +L+NV K GE+ A++ PSG GKST+L+ AG G V+I N D Sbjct: 22 KQLLKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGRRTGLGVSGEVLI-----NGRPLD 76 Query: 81 KKSFLRCSKIGFVYQEHRLLMDFSVIENIIFPQIIAGINHKTAYQRAMDLLSYMDMSQYA 140 K+SF + IG+V Q+ L +V E ++F A Sbjct: 77 KRSFRKI--IGYVPQDDILHPTLTVRETLMFA---------------------------A 107 Query: 141 NRRSSDISGGEQQRVAICRAIANKPLIILADEPTGNLDLKTAQQVFSILKYLVVRSGLAA 200 R +SGGE++RV+I + + P ++ DEPT LD +A QV S+L+ L +G Sbjct: 108 KLRG--LSGGERKRVSIALELVSNPSLLFLDEPTSGLDSSSALQVMSLLRRL-ADTGRTI 164 Query: 201 LIATH 205 + + H Sbjct: 165 ICSIH 169 >gnl|CDD|73009 cd03250, ABCC_MRP_domain1, Domain 1 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.. Length = 204 Score = 78.6 bits (194), Expect = 1e-15 Identities = 49/209 (23%), Positives = 98/209 (46%), Gaps = 28/209 (13%) Query: 21 KPFPVLENVHLSLKKGEIVALVSPSGTGKSTILHIAGLLEVPDQGNVIIANQLCNKLSDD 80 + L++++L + KGE+VA+V P G+GKS++L + L +L Sbjct: 16 ETSFTLKDINLEVPKGELVAIVGPVGSGKSSLL-----------------SALLGELEKL 58 Query: 81 KKSFLRCSKIGFVYQEHRLLMDFSVIENIIF-----PQIIAGINHKTAYQRAMDLLSYMD 135 S I +V QE + + ++ ENI+F + + A + +++L D Sbjct: 59 SGSVSVPGSIAYVSQE-PWIQNGTIRENILFGKPFDEERYEKVIKACALEPDLEILPDGD 117 Query: 136 MSQYANRRSSDISGGEQQRVAICRAIANKPLIILADEPTGNLDLKTAQQVFS--ILKYLV 193 +++ + + +SGG++QR+++ RA+ + I L D+P +D + +F IL L Sbjct: 118 LTEIGEKGIN-LSGGQKQRISLARAVYSDADIYLLDDPLSAVDAHVGRHIFENCILGLL- 175 Query: 194 VRSGLAALIATHNHDLASQMDRQITIRDG 222 + ++ TH L D+ + + +G Sbjct: 176 -LNNKTRILVTHQLQLLPHADQIVVLDNG 203 >gnl|CDD|72974 cd03215, ABC_Carb_Monos_II, This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.. Length = 182 Score = 78.2 bits (193), Expect = 2e-15 Identities = 42/204 (20%), Positives = 85/204 (41%), Gaps = 40/204 (19%) Query: 25 VLENVHLSLKKGEIVALVSPSGTGKSTILH-IAGLLEVPDQGNVIIANQLCNKLSDDKKS 83 + +V ++ GEIV + G G++ + + GL P G + + + ++ Sbjct: 15 AVRDVSFEVRAGEIVGIAGLVGNGQTELAEALFGLRP-PASGEITLDGK---PVTRRSPR 70 Query: 84 FLRCSKIGFVYQEHR---LLMDFSVIENIIFPQIIAGINHKTAYQRAMDLLSYMDMSQYA 140 + I +V ++ + L++D SV ENI ++ Sbjct: 71 DAIRAGIAYVPEDRKREGLVLDLSVAENIALSSLL------------------------- 105 Query: 141 NRRSSDISGGEQQRVAICRAIANKPLIILADEPTGNLDLKTAQQVFSILKYLVVRSGLAA 200 SGG QQ+V + R +A P +++ DEPT +D+ +++ +++ L Sbjct: 106 -------SGGNQQKVVLARWLARDPRVLILDEPTRGVDVGAKAEIYRLIRELADAGKAVL 158 Query: 201 LIATHNHDLASQMDRQITIRDGMI 224 LI++ +L DR + + +G I Sbjct: 159 LISSELDELLGLCDRILVMYEGRI 182 >gnl|CDD|35277 KOG0054, KOG0054, KOG0054, Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]. Length = 1381 Score = 76.5 bits (188), Expect = 6e-15 Identities = 53/211 (25%), Positives = 101/211 (47%), Gaps = 31/211 (14%) Query: 22 PFPVLENVHLSLKKGEIVALVSPSGTGKSTILH-IAGLLEVPDQGNVIIANQLCNKLSDD 80 P P L++++ +KKG++VA+V P G+GKS++L I G + G+V + Sbjct: 533 PEPTLKDINFEIKKGQLVAVVGPVGSGKSSLLSAILGEMP-KLSGSVAV----------- 580 Query: 81 KKSFLRCSKIGFVYQEHRLLMDFSVIENIIF-----PQIIAGINHKTAYQRAMDLLSYMD 135 + +V Q+ + +V ENI+F + + A ++ +++L + D Sbjct: 581 ------NGSVAYVPQQPWIQNG-TVRENILFGSPYDEERYDKVIKACALKKDLEILPFGD 633 Query: 136 MSQYANRRSSDISGGEQQRVAICRAIANKPLIILADEPTGNLDLKTAQQVFS--ILKYLV 193 +++ R + +SGG++QR+++ RA+ I L D+P +D + +F I L Sbjct: 634 LTEIGERGIN-LSGGQKQRISLARAVYQDADIYLLDDPLSAVDAHVGKHIFEECIRGLL- 691 Query: 194 VRSGLAALIATHNHDLASQMDRQITIRDGMI 224 G ++ TH D+ I ++DG I Sbjct: 692 --RGKTVILVTHQLQFLPHADQIIVLKDGKI 720 Score = 47.6 bits (113), Expect = 3e-06 Identities = 38/185 (20%), Positives = 78/185 (42%), Gaps = 19/185 (10%) Query: 9 LQNVKHSYRQVGKPFPVLENVHLSLKKGEIVALVSPSGTGKSTILHIAGLLEVPDQGNVI 68 +++ YR VL+ + ++K GE V +V +G GKS+++ L P +G ++ Sbjct: 1141 FEDLSLRYRPNLPL--VLKGISFTIKPGEKVGIVGRTGAGKSSLILALFRLVEPAEGEIL 1198 Query: 69 IANQLCNKLSDDKKSFLRCSKIGFVYQEHRLLMDFSVIENI-IFPQI-------IAGINH 120 I +K+ LR S++ + Q+ L +V N+ F + Sbjct: 1199 IDGVDISKIG---LHDLR-SRLSIIPQDPVLFSG-TVRFNLDPFDEYSDDEIWEALERCQ 1253 Query: 121 KTAYQRAMDLLSYMDMSQYANRRSSDISGGEQQRVAICRAIANKPLIILADEPTGNLDLK 180 ++ + + + S G++Q + + RA+ K I++ DE T ++D + Sbjct: 1254 LKDVVSSLPG----GLDSEVSEGGENFSVGQRQLLCLARALLRKSKILVLDEATASVDPE 1309 Query: 181 TAQQV 185 T + Sbjct: 1310 TDALI 1314 >gnl|CDD|31298 COG1101, PhnK, ABC-type uncharacterized transport system, ATPase component [General function prediction only]. Length = 263 Score = 76.1 bits (187), Expect = 7e-15 Identities = 60/214 (28%), Positives = 100/214 (46%), Gaps = 19/214 (8%) Query: 24 PVLENVHLSLKKGEIVALVSPSGTGKSTILH-IAGLLEVPDQGNVIIANQLCNKLSDDKK 82 L + L + +G+ V ++ +G GKST+L+ IAG L P G ++I K S K Sbjct: 20 RALNGLSLEIAEGDFVTVIGSNGAGKSTLLNAIAGDL-KPTSGQILIDGVDVTKKSVAK- 77 Query: 83 SFLRCSKIGFVYQ--EHRLLMDFSVIENIIFPQI---IAGINHKTAYQRA---MDLLSYM 134 R + + V+Q + ++ EN+ + G++ +R + L+ + Sbjct: 78 ---RANLLARVFQDPLAGTAPELTIEENLALAESRGKKRGLSSALNERRRSSFRERLARL 134 Query: 135 DMSQYANRRSSDI---SGGEQQRVAICRAIANKPLIILADEPTGNLDLKTAQQVFSILKY 191 + NR S I SGG++Q +++ A + P I+L DE T LD KTA+ V + Sbjct: 135 GLG-LENRLSDRIGLLSGGQRQALSLLMATLHPPKILLLDEHTAALDPKTAEFVMELTAK 193 Query: 192 LVVRSGLAALIATHNHDLASQM-DRQITIRDGMI 224 +V L L+ THN + A +R I + G I Sbjct: 194 IVEEHKLTTLMVTHNMEDALDYGNRLIMLHSGKI 227 >gnl|CDD|73006 cd03247, ABCC_cytochrome_bd, The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.. Length = 178 Score = 74.5 bits (183), Expect = 2e-14 Identities = 62/219 (28%), Positives = 95/219 (43%), Gaps = 46/219 (21%) Query: 7 LLLQNVKHSYRQVGKPFPVLENVHLSLKKGEIVALVSPSGTGKSTILH-IAGLLEVPDQG 65 L + NV SY + VL+N+ L LK+GE +AL+ SG+GKST+L + G L+ P QG Sbjct: 1 LSINNVSFSYP--EQEQQVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLK-PQQG 57 Query: 66 NVIIANQLCNKLSDDKKSFLRCSKIGFVYQEHRLLMDFSVIENIIFPQIIAGINHKTAYQ 125 + + + L S I + Q L D ++ N+ Sbjct: 58 EITLDGVPVSDLEK-----ALSSLISVLNQRPYLF-DTTLRNNL---------------- 95 Query: 126 RAMDLLSYMDMSQYANRRSSDISGGEQQRVAICRAIANKPLIILADEPTGNLDLKTAQQV 185 RR SGGE+QR+A+ R + I+L DEPT LD T +Q+ Sbjct: 96 ---------------GRR---FSGGERQRLALARILLQDAPIVLLDEPTVGLDPITERQL 137 Query: 186 FSILKYLVVRSGLAALIATHNHDLASQMDRQITIRDGMI 224 S++ V + TH+ MD+ + + +G I Sbjct: 138 LSLI--FEVLKDKTLIWITHHLTGIEHMDKILFLENGKI 174 >gnl|CDD|33911 COG4170, SapD, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]. Length = 330 Score = 74.7 bits (183), Expect = 2e-14 Identities = 56/218 (25%), Positives = 104/218 (47%), Gaps = 25/218 (11%) Query: 22 PFPVLENVHLSLKKGEIVALVSPSGTGKSTILHIAGLLEVPDQGNVIIANQL------CN 75 ++ V ++L +GEI LV SG+GKS I + V + A+++ Sbjct: 19 WVKAVDRVSMTLNEGEIRGLVGESGSGKSLIAKA--ICGVNKDNWRVTADRMRFDDIDLL 76 Query: 76 KLSDDKKSFLRCSKIGFVYQEHRLLMDFSVIENIIFPQIIAGINHKT-----------AY 124 +LS ++ L + ++QE + +D S + Q+I I T Sbjct: 77 RLSPRERRKLVGHNVSMIFQEPQSCLDPS---ERVGRQLIQNIPAWTYKGRWWQRFGWRK 133 Query: 125 QRAMDLLSYMDMSQYANRRSS---DISGGEQQRVAICRAIANKPLIILADEPTGNLDLKT 181 +RA++LL + + + + S +++ GE Q+V I A+AN+P +++ADEPT +++ T Sbjct: 134 RRAIELLHRVGIKDHKDIMRSYPYELTEGECQKVMIAIALANQPRLLIADEPTNSMEPTT 193 Query: 182 AQQVFSILKYLVVRSGLAALIATHNHDLASQMDRQITI 219 Q+F +L L S L+ +H+ + SQ +I + Sbjct: 194 QAQIFRLLSRLNQNSNTTILLISHDLQMISQWADKINV 231 >gnl|CDD|31329 COG1134, TagH, ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]. Length = 249 Score = 73.7 bits (181), Expect = 4e-14 Identities = 47/205 (22%), Positives = 86/205 (41%), Gaps = 20/205 (9%) Query: 23 FPVLENVHLSLKKGEIVALVSPSGTGKSTILH-IAGLLEVPDQGNVIIANQLCNKLSDDK 81 F L+++ + KGE V ++ +G GKST+L IAG+ + P G V + ++ + Sbjct: 40 FWALKDISFEIYKGERVGIIGHNGAGKSTLLKLIAGIYK-PTSGKVKVTGKVAPLIELG- 97 Query: 82 KSFLRCSKIGFVYQEHRLLMDFSVIENIIFPQIIAGINHKTAYQRAMDLLSYMDMSQYAN 141 GF + + ENI +I G+ K ++ +++ + ++ + + Sbjct: 98 --------AGFD-------PELTGRENIYLRGLILGLTRKEIDEKVDEIIEFAELGDFID 142 Query: 142 RRSSDISGGEQQRVAICRAIANKPLIILADEPTGNLDLKTAQQVFSILKYLVVRSGLAAL 201 + S G R+A A +P I+L DE D ++ L L V + Sbjct: 143 QPVKTYSSGMYARLAFSVATHVEPDILLLDEVLAVGDAAFQEKCLERLNEL-VEKNKTIV 201 Query: 202 IATHNHDLASQM-DRQITIRDGMIA 225 + +H+ Q DR I + G I Sbjct: 202 LVSHDLGAIKQYCDRAIWLEHGQIR 226 >gnl|CDD|72979 cd03220, ABC_KpsT_Wzt, ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.. Length = 224 Score = 73.7 bits (181), Expect = 4e-14 Identities = 44/206 (21%), Positives = 90/206 (43%), Gaps = 18/206 (8%) Query: 21 KPFPVLENVHLSLKKGEIVALVSPSGTGKSTILHIAGLLEVPDQGNVIIANQLCNKLSDD 80 F L++V + +GE + L+ +G GKST+L + + PD G V + ++ + L Sbjct: 33 GEFWALKDVSFEVPRGERIGLIGRNGAGKSTLLRLLAGIYPPDSGTVTVRGRVSSLLG-- 90 Query: 81 KKSFLRCSKIGFVYQEHRLLMDFSVIENIIFPQIIAGINHKTAYQRAMDLLSYMDMSQYA 140 GF + + ENI + G++ K ++ +++ + ++ + Sbjct: 91 -------LGGGF-------NPELTGRENIYLNGRLLGLSRKEIDEKIDEIIEFSELGDFI 136 Query: 141 NRRSSDISGGEQQRVAICRAIANKPLIILADEPTGNLDLKTAQQVFSILKYLVVRSGLAA 200 + S G + R+A A A +P I+L DE D ++ L+ L ++ G Sbjct: 137 DLPVKTYSSGMKARLAFAIATALEPDILLIDEVLAVGDAAFQEKCQRRLREL-LKQGKTV 195 Query: 201 LIATHNHDLASQM-DRQITIRDGMIA 225 ++ +H+ ++ DR + + G I Sbjct: 196 ILVSHDPSSIKRLCDRALVLEKGKIR 221 >gnl|CDD|32537 COG2401, COG2401, ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only]. Length = 593 Score = 73.1 bits (179), Expect = 5e-14 Identities = 45/200 (22%), Positives = 91/200 (45%), Gaps = 18/200 (9%) Query: 24 PVLENVHLSLKKGEIVALVSPSGTGKSTILH-IAG-LLEVPDQGNVIIANQLCNKLSDDK 81 VL N++L +K G++VA+V SG GK+T+L I G ++ + ++ ++ + Sbjct: 397 YVLRNLNLEIKPGDVVAVVGQSGAGKTTLLRMILGAQKGRGEEKYRPDSGKV--EVPKNT 454 Query: 82 KSFLRCSKIGFVYQEHRLLMDFSVIENIIFPQIIAGINHKTAYQRAMDLLSYMDMSQYAN 141 S L + + E I + + A ++ D Y Sbjct: 455 VSALIPGEY-----------EPEFGEVTILEHLRSKTGDLNAAVEILNRAGLSDAVLY-R 502 Query: 142 RRSSDISGGEQQRVAICRAIANKPLIILADEPTGNLDLKTAQQVFSILKYLVVRSGLAAL 201 R+ S++S G+++R + + +A +P ++L DE +LD TA +V + L +G+ + Sbjct: 503 RKFSELSTGQKERAKLAKLLAERPNVLLIDEFAAHLDELTAVRVARKISELAREAGITLI 562 Query: 202 IATHNHDLASQM--DRQITI 219 + TH ++ + + D I + Sbjct: 563 VVTHRPEVGNALRPDTLILV 582 >gnl|CDD|33889 COG4133, CcmA, ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]. Length = 209 Score = 72.2 bits (177), Expect = 1e-13 Identities = 46/187 (24%), Positives = 85/187 (45%), Gaps = 17/187 (9%) Query: 23 FPVLENVHLSLKKGEIVALVSPSGTGKSTILHI-AGLLEVPDQGNVIIANQLCNKLSDDK 81 + ++ +L GE + + P+G GK+T+L I AGLL PD G V + + + + Sbjct: 15 RTLFSDLSFTLNAGEALQITGPNGAGKTTLLRILAGLLR-PDAGEVYWQGE---PIQNVR 70 Query: 82 KSFLR-CSKIGFVYQEHRLLM--DFSVIENIIFPQIIAGINHKTAYQRAMDLLSYMDMSQ 138 +S+ + +G H+ + + + +EN+ F Q G + A L+ + ++ Sbjct: 71 ESYHQALLYLG-----HQPGIKTELTALENLHFWQRFHGSGNAATIWEA---LAQVGLAG 122 Query: 139 YANRRSSDISGGEQQRVAICRAIANKPLIILADEPTGNLDLKTAQQVFSILKYLVVRSGL 198 + +S G+Q+RVA+ R + + + DEP LD K + + L G Sbjct: 123 LEDLPVGQLSAGQQRRVALARLWLSPAPLWILDEPFTALD-KEGVALLTALMAAHAAQGG 181 Query: 199 AALIATH 205 L+ TH Sbjct: 182 IVLLTTH 188 >gnl|CDD|72976 cd03217, ABC_FeS_Assembly, ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.. Length = 200 Score = 69.7 bits (171), Expect = 6e-13 Identities = 53/205 (25%), Positives = 91/205 (44%), Gaps = 39/205 (19%) Query: 25 VLENVHLSLKKGEIVALVSPSGTGKSTILH-IAGLLEV-PDQGNVIIANQLCNKLSDDKK 82 +L+ V+L++KKGE+ AL+ P+G+GKST+ I G + +G ++ + L +++ Sbjct: 15 ILKGVNLTIKKGEVHALMGPNGSGKSTLAKTIMGHPKYEVTEGEILFKGEDITDLPPEER 74 Query: 83 SFLRCSKIGFVYQEHRLLMDFSVIENIIFPQIIAGINHKTAYQRAMDLLSYMDMSQYANR 142 + L I +Q P I G+ + D L Y++ Sbjct: 75 ARL---GIFLAFQY---------------PPEIPGV-------KNADFLRYVNEG----- 104 Query: 143 RSSDISGGEQQRVAICRAIANKPLIILADEPTGNLDLKTAQQVFSILKYLVVRSGLAALI 202 SGGE++R I + + +P + + DEP LD+ + V ++ L G + LI Sbjct: 105 ----FSGGEKKRNEILQLLLLEPDLAILDEPDSGLDIDALRLVAEVINKL-REEGKSVLI 159 Query: 203 ATHNHDLASQM--DRQITIRDGMIA 225 TH L + DR + DG I Sbjct: 160 ITHYQRLLDYIKPDRVHVLYDGRIV 184 >gnl|CDD|34241 COG4618, ArpD, ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]. Length = 580 Score = 69.5 bits (170), Expect = 8e-13 Identities = 52/214 (24%), Positives = 101/214 (47%), Gaps = 15/214 (7%) Query: 20 GKPFPVLENVHLSLKKGEIVALVSPSGTGKSTILHIAGLLEVPDQGNVIIANQLCNKLSD 79 G+ P+L+ + +L+ GE + ++ PSG+GKST+ + + P G+V + + Sbjct: 346 GQKKPILKGISFALQAGEALGIIGPSGSGKSTLARLLVGIWPPTSGSVRLDGADLRQW-- 403 Query: 80 DKKSFLRCSKIGFVYQEHRLLMDFSVIENIIF-------PQIIAGINHKTAYQRAMDLLS 132 D++ R IG++ Q+ L D ++ ENI ++I + A + L Sbjct: 404 DREQLGR--HIGYLPQDVEL-FDGTIAENIARFGEEADPEKVIEAA--RLAGVHELILRL 458 Query: 133 YMDMSQYANRRSSDISGGEQQRVAICRAIANKPLIILADEPTGNLDLKTAQQVFSILKYL 192 + +SGG++QR+A+ RA+ P +++ DEP NLD + + + + Sbjct: 459 PQGYDTRIGEGGATLSGGQRQRIALARALYGDPFLVVLDEPNSNLDSEGEAALAAAILAA 518 Query: 193 VVRSGLAALIATHNHDLASQMDRQITIRDGMIAD 226 R G ++ H + +D+ + ++DG IA Sbjct: 519 KAR-GGTVVVIAHRPSALASVDKILVLQDGRIAA 551 >gnl|CDD|30745 COG0396, SufC, ABC-type transport system involved in Fe-S cluster assembly, ATPase component [Posttranslational modification, protein turnover, chaperones]. Length = 251 Score = 67.5 bits (165), Expect = 3e-12 Identities = 55/230 (23%), Positives = 106/230 (46%), Gaps = 27/230 (11%) Query: 12 VKHSYRQVGKPFPVLENVHLSLKKGEIVALVSPSGTGKSTILH-IAGLLEV-PDQGNVII 69 +K + +V +L+ V+L++K+GE+ A++ P+G+GKST+ + I G + +G ++ Sbjct: 6 IKDLHVEVEGKKEILKGVNLTVKEGEVHAIMGPNGSGKSTLAYTIMGHPKYEVTEGEILF 65 Query: 70 ANQLCNKLSDDKKSFLRCSKIGFVYQEHRLLMDFSVIENIIFPQIIAGINHKTAY----- 124 + +LS D+++ I +Q ++ + N F + A +N + Sbjct: 66 DGEDILELSPDERARA---GIFLAFQYP---VEIPGVTNSDF--LRAAMNARRGARGILP 117 Query: 125 ------QRAMDLLSYMDMSQYANRRSSD-ISGGEQQRVAICRAIANKPLIILADEPTGNL 177 + +LL +D + R ++ SGGE++R I + + +P + + DEP L Sbjct: 118 EFIKELKEKAELLG-LDEE-FLERYVNEGFSGGEKKRNEILQLLLLEPKLAILDEPDSGL 175 Query: 178 DLKTAQQVFSILKYLVVRSGLAALIATHNHDLA--SQMDRQITIRDGMIA 225 D+ + V + L G LI TH L + D+ + DG I Sbjct: 176 DIDALKIVAEGINAL-REEGRGVLIITHYQRLLDYIKPDKVHVLYDGRIV 224 >gnl|CDD|35288 KOG0065, KOG0065, KOG0065, Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]. Length = 1391 Score = 67.2 bits (164), Expect = 4e-12 Identities = 52/209 (24%), Positives = 99/209 (47%), Gaps = 18/209 (8%) Query: 25 VLENVHLSLKKGEIVALVSPSGTGKSTILH-IAGLLEVPDQGNVIIANQLCNKLSDDKKS 83 +L NV + K G + AL+ SG GK+T+L +AG G I + L + D+++ Sbjct: 806 LLNNVSGAFKPGVLTALMGESGAGKTTLLDVLAGRKT----GGYIEGDILISGFPKDQET 861 Query: 84 FLRCSKIGFVYQEHRLLMDFSVIENIIFP---QIIAGINHKTAYQRAMDLLSYMDMSQYA 140 F R G+V Q+ + +V E++ F ++ ++ + Y+ +++ +++ +YA Sbjct: 862 FAR--VSGYVEQQDIHSPELTVRESLRFSAALRLPKEVSDEEKYEYVEEVIELLELKEYA 919 Query: 141 NR----RSSDISGGEQQRVAICRAIANKP-LIILADEPTGNLDLKTAQQVFSILKYLVVR 195 + S +S +++R+ I + P I+ DEPT LD + A V L+ L Sbjct: 920 DALVGLPGSGLSTEQRKRLTIGVELVANPSSILFLDEPTSGLDSQAAAIVMRFLRKL-AD 978 Query: 196 SGLAALIATH--NHDLASQMDRQITIRDG 222 +G L H + D+ D + ++ G Sbjct: 979 TGQTILCTIHQPSIDIFEAFDELLLLKRG 1007 Score = 49.1 bits (117), Expect = 1e-06 Identities = 48/199 (24%), Positives = 85/199 (42%), Gaps = 19/199 (9%) Query: 21 KPFPVLENVHLSLKKGEIVALVSPSGTGKSTILH-IAGLLEVPDQGNVIIANQLCNKLSD 79 K +L+++ +K GE+ ++ P G+GK+T+L +AG L+ + + I Sbjct: 126 KKIQILKDISGIIKPGEMTLVLGPPGSGKTTLLKALAGKLDNFLKSSGEITYN-----GH 180 Query: 80 DKKSFLRCSKIGFVYQEHRLLMDFSVIENIIF------PQIIAGINHKTAYQRAM-DL-- 130 D K F+ + + ++ + +V E + F P + AM D Sbjct: 181 DLKEFVPKKTVAYNSEQDVHFPELTVRETLDFAARCKGPGSRYDEVSRREKLAAMTDYLL 240 Query: 131 ----LSYMDMSQYANRRSSDISGGEQQRVAICRAIANKPLIILADEPTGNLDLKTAQQVF 186 L + + N +SGGE++RV+I + I+ DE T LD TA Q+ Sbjct: 241 KILGLDHCADTLVGNDMVRGVSGGERKRVSIGEMLVGPASILFWDEITRGLDSSTAFQII 300 Query: 187 SILKYLVVRSGLAALIATH 205 L+ L +G AL++ Sbjct: 301 KALRQLAHITGATALVSIL 319 >gnl|CDD|72990 cd03231, ABC_CcmA_heme_exporter, CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.. Length = 201 Score = 66.5 bits (162), Expect = 5e-12 Identities = 44/198 (22%), Positives = 82/198 (41%), Gaps = 17/198 (8%) Query: 25 VLENVHLSLKKGEIVALVSPSGTGKSTILHIAGLLEVPDQGNVIIANQLCNKLSDDKKSF 84 + + +L GE + + P+G+GK+T+L I L P G V++ + D Sbjct: 15 LFSGLSFTLAAGEALQVTGPNGSGKTTLLRILAGLSPPLAGRVLLNGGPLDFQRDSIAR- 73 Query: 85 LRCSKIGFVYQEHRLLMD--FSVIENIIFPQIIAGINHKTAYQRAMDLLSYMDMSQYANR 142 G +Y H + SV+EN+ F + + A+ + ++ + +R Sbjct: 74 ------GLLYLGHAPGIKTTLSVLENLRF---WHADHSDEQVEEALA---RVGLNGFEDR 121 Query: 143 RSSDISGGEQQRVAICRAIANKPLIILADEPTGNLDLKTAQQVFSILKYLVVRSGLAALI 202 + +S G+Q+RVA+ R + + + + DEPT LD + + R G ++ Sbjct: 122 PVAQLSAGQQRRVALARLLLSGRPLWILDEPTTALDKAGVARFAEAMAGHCARGG-MVVL 180 Query: 203 ATHNHDLASQMDRQITIR 220 TH DL + Sbjct: 181 TTH-QDLGLSEAGARELD 197 >gnl|CDD|36145 KOG0927, KOG0927, KOG0927, Predicted transporter (ABC superfamily) [General function prediction only]. Length = 614 Score = 65.4 bits (159), Expect = 1e-11 Identities = 43/177 (24%), Positives = 78/177 (44%), Gaps = 10/177 (5%) Query: 15 SYRQVGKPFPVLENVHLSLKKGEIVALVSPSGTGKSTILHIAGLLEVPDQGNVIIANQLC 74 S ++++V L L +G L+ P+G+GKST L EVP ++ Sbjct: 80 SLSLSFHGVELIKDVTLELNRGRRYGLIGPNGSGKSTFLRAIAGREVPIPEHIDFYLLSR 139 Query: 75 NKLSDDKKS----FLRCSK--IGFVYQEHRLLM---DFSVIENIIFPQIIAGINHKTAYQ 125 +K++ + Y L D E + + +++ T Sbjct: 140 EIEPSEKQAVQAVVMETDHERKRLEYLAEDLAQACDDKEKDELDELYERLDEMDNDTFEA 199 Query: 126 RAMDLLSYMD-MSQYANRRSSDISGGEQQRVAICRAIANKPLIILADEPTGNLDLKT 181 +A +L + +S+ +++ D+SGG + R A+ RA+ KP ++L DEPT +LDL+ Sbjct: 200 KAAKILHGLGFLSEMQDKKVKDLSGGWRMRAALARALFQKPDLLLLDEPTNHLDLEA 256 Score = 58.0 bits (140), Expect = 2e-09 Identities = 42/179 (23%), Positives = 74/179 (41%), Gaps = 26/179 (14%) Query: 6 VLLLQNVKHSYRQVGKPFPVLENVHLSLKKGEIVALVSPSGTGKSTILHIAGLLEVPDQG 65 V+++QNV Y + + ++ + VALV P+G GKST+L + P G Sbjct: 389 VIMVQNVSFGYS---DNPMIYKKLNFGIDLDSRVALVGPNGAGKSTLLKLITGDLQPTIG 445 Query: 66 NVIIANQLCNKLSDDKKSFLRCSKIGFVYQEH---RLLMDFSVIENIIFPQIIAGINHKT 122 V + K+ Y +H +L +D S +E ++ Sbjct: 446 MVSRHSHN---------------KLP-RYNQHLAEQLDLDKSSLEFMM--PKFPDEKELE 487 Query: 123 AYQRAMDLLSYMDMSQYANRRSSDISGGEQQRVAICRAIANKPLIILADEPTGNLDLKT 181 + + +Q S +S G+++RV R +P ++L DEPT +LD++T Sbjct: 488 EMRSILGRFGLTGDAQ--VVPMSQLSDGQRRRVLFARLAVKQPHLLLLDEPTNHLDIET 544 >gnl|CDD|72996 cd03237, ABC_RNaseL_inhibitor_domain2, The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.. Length = 246 Score = 64.9 bits (158), Expect = 2e-11 Identities = 39/192 (20%), Positives = 85/192 (44%), Gaps = 22/192 (11%) Query: 32 SLKKGEIVALVSPSGTGKSTILHI-AGLLEVPDQGNVIIANQLCNKLSDDKKSFLRCSKI 90 S+ + E++ ++ P+G GK+T + + AG+L+ PD+G++ I +S Sbjct: 21 SISESEVIGILGPNGIGKTTFIKMLAGVLK-PDEGDIEIELD---TVS------------ 64 Query: 91 GFVYQEHRLLMDFSVIENIIFPQIIAGINHKTAYQRAMDLLSYMDMSQYANRRSSDISGG 150 Y+ + D+ + I ++ ++ + + Q +R ++SGG Sbjct: 65 ---YKPQYIKADYEGTVRDLLSSITKDFYTHPYFK--TEIAKPLQIEQILDREVPELSGG 119 Query: 151 EQQRVAICRAIANKPLIILADEPTGNLDLKTAQQVFSILKYLVVRSGLAALIATHNHDLA 210 E QRVAI ++ I L DEP+ LD++ +++ + A + H+ + Sbjct: 120 ELQRVAIAACLSKDADIYLLDEPSAYLDVEQRLMASKVIRRFAENNEKTAFVVEHDIIMI 179 Query: 211 SQMDRQITIRDG 222 + ++ + +G Sbjct: 180 DYLADRLIVFEG 191 >gnl|CDD|31438 COG1245, COG1245, Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]. Length = 591 Score = 64.8 bits (158), Expect = 2e-11 Identities = 41/190 (21%), Positives = 85/190 (44%), Gaps = 29/190 (15%) Query: 32 SLKKGEIVALVSPSGTGKSTILHI-AGLLEVPDQGNVIIANQLCNKLSDDKKSFLRCSKI 90 + GE++ ++ P+G GK+T + + AG+++ PD+G+ + Sbjct: 363 EIYDGEVIGILGPNGIGKTTFVKLLAGVIK-PDEGSEE--------------------DL 401 Query: 91 GFVYQEHRLLMDFSVIENIIFPQIIAGINHKTAYQRAMDLLSYMDMSQYANRRSSDISGG 150 Y+ + D+ + I + ++ +++ +++ R ++SGG Sbjct: 402 KVSYKPQYISPDYDGTVEDLLRSAIRSAFGSSYFK--TEIVKPLNLEDLLERPVDELSGG 459 Query: 151 EQQRVAICRAIANKPLIILADEPTGNLDLKTAQQVFSILKYLVVRSGLAALIATHN---H 207 E QRVAI A++ + + L DEP+ LD++ V +++ + + AL+ H+ Sbjct: 460 ELQRVAIAAALSREADLYLLDEPSAYLDVEQRIIVAKVIRRFIENNEKTALVVDHDIYMI 519 Query: 208 DLASQMDRQI 217 D S DR I Sbjct: 520 DYVS--DRLI 527 Score = 52.9 bits (127), Expect = 7e-08 Identities = 45/188 (23%), Positives = 83/188 (44%), Gaps = 22/188 (11%) Query: 34 KKGEIVALVSPSGTGKSTILHI-AGLLEVPDQGNVIIANQLCNKLSDDKKSFLRCSKI-- 90 + G++V ++ P+G GKST L I AG L P+ G + D+ R +++ Sbjct: 98 RPGKVVGILGPNGIGKSTALKILAGEL-KPNLGRY---EDPPSW--DEVIKRFRGTELQN 151 Query: 91 ---GFVYQEHRLLMDFSVIENIIFPQIIAG-----INHKTAYQRAMDLLSYMDMSQYANR 142 E R + ++ I P+++ G + + +++ + + +R Sbjct: 152 YFKKLYEGELRAVHKPQYVDLI--PKVVKGKVGELLKKVDERGKFDEVVERLGLENVLDR 209 Query: 143 RSSDISGGEQQRVAICRAIANKPLIILADEPTGNLDLKTAQQVFSILKYLVVRSGLAALI 202 S++SGGE QRVAI A+ + DEP+ LD++ +++ L G ++ Sbjct: 210 DVSELSGGELQRVAIAAALLRDADVYFFDEPSSYLDIRQRLNAARVIREL-AEDGKYVIV 268 Query: 203 ATHNHDLA 210 HDLA Sbjct: 269 V--EHDLA 274 >gnl|CDD|72980 cd03221, ABCF_EF-3, ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.. Length = 144 Score = 64.7 bits (158), Expect = 2e-11 Identities = 43/217 (19%), Positives = 82/217 (37%), Gaps = 75/217 (34%) Query: 7 LLLQNVKHSYRQVGKPFPVLENVHLSLKKGEIVALVSPSGTGKSTILHIAGLLEVPDQGN 66 + L+N+ +Y +L+++ L++ G+ + LV +G GKST+L + Sbjct: 1 IELENLSKTY----GGKLLLKDISLTINPGDRIGLVGRNGAGKSTLLKL----------- 45 Query: 67 VIIANQLCNKLSDDKKSFLRCSKIGFVYQEHRLLMDFSVIENIIFPQIIAGINHKTAYQR 126 + +L D+ S + Y F Q+ Sbjct: 46 ------IAGELEPDEGIVTWGSTVKIGY----------------FEQL------------ 71 Query: 127 AMDLLSYMDMSQYANRRSSDISGGEQQRVAICRAIANKPLIILADEPTGNLDLKTAQQVF 186 SGGE+ R+A+ + + P ++L DEPT +LDL++ + + Sbjct: 72 ---------------------SGGEKMRLALAKLLLENPNLLLLDEPTNHLDLESIEALE 110 Query: 187 SILKYLVVRSGLAALIATHNHDLASQM-DRQITIRDG 222 LK G ++ +H+ Q+ + I + DG Sbjct: 111 EALKEY---PG-TVILVSHDRYFLDQVATKIIELEDG 143 >gnl|CDD|33918 COG4178, COG4178, ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]. Length = 604 Score = 63.7 bits (155), Expect = 3e-11 Identities = 44/201 (21%), Positives = 85/201 (42%), Gaps = 22/201 (10%) Query: 24 PVLENVHLSLKKGEIVALVSPSGTGKSTILH-IAGLLEVPDQGNVIIANQLCNKLSDDKK 82 +L ++ ++ GE + + SG GK+++L +AGL G + + Sbjct: 407 TLLSELNFEVRPGERLLITGESGAGKTSLLRALAGLWPW-GSGRISMP------------ 453 Query: 83 SFLRCSKIGFVYQEHRLLMDFSVIENIIFPQIIAGINHKTAYQ--RAMDLLSYMDMSQYA 140 S + F+ Q L ++ E + +P + + L + Sbjct: 454 ---ADSALLFLPQ-RPYLPQGTLREALCYPNAAPDFSDAELVAVLHKVGLGDLAERLDEE 509 Query: 141 NRRSSDISGGEQQRVAICRAIANKPLIILADEPTGNLDLKTAQQVFSILKYLVVRSGLAA 200 +R +SGGEQQR+A R + +KP + DE T LD +T +++ +LK + + + + Sbjct: 510 DRWDRVLSGGEQQRLAFARLLLHKPKWVFLDEATSALDEETEDRLYQLLKEELPDATVIS 569 Query: 201 LIATHNHDLASQMDRQITIRD 221 + H L + RQ+ + D Sbjct: 570 V--GHRPTLWNFHSRQLELLD 588 >gnl|CDD|73049 cd03290, ABCC_SUR1_N, The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.. Length = 218 Score = 64.0 bits (155), Expect = 3e-11 Identities = 57/220 (25%), Positives = 102/220 (46%), Gaps = 12/220 (5%) Query: 12 VKHSYRQVGKPFPVLENVHLSLKKGEIVALVSPSGTGKSTILHIAGLLEVPD-QGNVIIA 70 V + Y G L N+++ + G++ +V G GKS++L +A L E+ +G V + Sbjct: 3 VTNGYFSWGSGLATLSNINIRIPTGQLTMIVGQVGCGKSSLL-LAILGEMQTLEGKVHWS 61 Query: 71 NQLCNKLSDDKKSFLRCSKIGFVYQEHRLLMDFSVIENIIF-----PQIIAGINHKTAYQ 125 N+ ++ S + + + Q+ LL + +V ENI F Q + + Q Sbjct: 62 NKNESEPSFEATRSRNRYSVAYAAQKPWLL-NATVEENITFGSPFNKQRYKAVTDACSLQ 120 Query: 126 RAMDLLSYMDMSQYANRRSSDISGGEQQRVAICRAIANKPLIILADEPTGNLDLKTAQQV 185 +DLL + D ++ R ++SGG++QR+ + RA+ I+ D+P LD+ + + Sbjct: 121 PDIDLLPFGDQTEIG-ERGINLSGGQRQRICVARALYQNTNIVFLDDPFSALDIHLSDHL 179 Query: 186 FS--ILKYLVVRSGLAALIATHNHDLASQMDRQITIRDGM 223 ILK+L L+ TH D I ++DG Sbjct: 180 MQEGILKFLQDDKRTLVLV-THKLQYLPHADWIIAMKDGS 218 >gnl|CDD|73003 cd03244, ABCC_MRP_domain2, Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.. Length = 221 Score = 63.2 bits (154), Expect = 6e-11 Identities = 46/189 (24%), Positives = 89/189 (47%), Gaps = 17/189 (8%) Query: 9 LQNVKHSYRQVGKPFPVLENVHLSLKKGEIVALVSPSGTGKSTILH-IAGLLEVPDQGNV 67 +NV YR P VL+N+ S+K GE V +V +G+GKS++L + L+E G++ Sbjct: 5 FKNVSLRYRPNLPP--VLKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLVE-LSSGSI 61 Query: 68 IIANQLCNKLSDDKKSFLRCSKIGFVYQEHRLLMDFSVIENI-IFPQ-----IIAGINHK 121 +I +K+ LR S+I + Q+ +L ++ N+ F + + + Sbjct: 62 LIDGVDISKIGLHD---LR-SRISIIPQD-PVLFSGTIRSNLDPFGEYSDEELWQALERV 116 Query: 122 TAYQRAMDLLSYMDMSQYANRRSSDISGGEQQRVAICRAIANKPLIILADEPTGNLDLKT 181 + L +D ++S G++Q + + RA+ K I++ DE T ++D +T Sbjct: 117 GLKEFVESLPGGLDT--VVEEGGENLSVGQRQLLCLARALLRKSKILVLDEATASVDPET 174 Query: 182 AQQVFSILK 190 + ++ Sbjct: 175 DALIQKTIR 183 >gnl|CDD|72991 cd03232, ABC_PDR_domain2, The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.. Length = 192 Score = 62.9 bits (153), Expect = 7e-11 Identities = 56/225 (24%), Positives = 95/225 (42%), Gaps = 50/225 (22%) Query: 6 VLLLQNVKHSYRQVGKPFPVLENVHLSLKKGEIVALVSPSGTGKSTILHI------AGLL 59 VL +N+ ++ G +L N+ +K G + AL+ SG GK+T+L + AG++ Sbjct: 3 VLTWKNLNYTVPVKGGKRQLLNNISGYVKPGTLTALMGESGAGKTTLLDVLAGRKTAGVI 62 Query: 60 EVPDQGNVIIANQLCNKLSDDKKSFLRCSKIGFVYQEHRLLMDFSVIENIIFPQIIAGIN 119 G ++I + K+F R G+V Q+ + +V E + F ++ G+ Sbjct: 63 T----GEILINGRP------LDKNFQR--STGYVEQQDVHSPNLTVREALRFSALLRGL- 109 Query: 120 HKTAYQRAMDLLSYMDMSQYANRRSSDISGGEQQRVAICRAIANKPLIILADEPTGNLDL 179 + QR +R+ I +A KP I+ DEPT LD Sbjct: 110 --SVEQR--------------------------KRLTIGVELAAKPSILFLDEPTSGLDS 141 Query: 180 KTAQQVFSILKYLVVRSGLAALIATH--NHDLASQMDRQITIRDG 222 + A + LK L SG A L H + + + DR + ++ G Sbjct: 142 QAAYNIVRFLKKL-ADSGQAILCTIHQPSASIFEKFDRLLLLKRG 185 >gnl|CDD|34291 COG4674, COG4674, Uncharacterized ABC-type transport system, ATPase component [General function prediction only]. Length = 249 Score = 61.8 bits (150), Expect = 2e-10 Identities = 47/226 (20%), Positives = 103/226 (45%), Gaps = 18/226 (7%) Query: 3 SAEVLLLQNVKHSYRQVGKPFPVLENVHLSLKKGEIVALVSPSGTGKSTILHIAGLLEVP 62 + +L L V S+ F L ++ S+ GE+ L+ P+G GK+T++ + P Sbjct: 2 NPIILYLDGVSVSF----GGFKALNDLSFSVDPGELRVLIGPNGAGKTTLMDVITGKTRP 57 Query: 63 DQGNVIIANQLCNKLSDDKKSFLRCSKIGFVYQEHRLLMDFSVIENI---------IFPQ 113 +G V+ L+ + + + IG +Q+ + + +V EN+ +F Sbjct: 58 QEGEVLFDGDT--DLTKLPEHRIARAGIGRKFQKPTVFENLTVRENLELALNRDKSVFAS 115 Query: 114 IIAGINHKTAYQRAMDLLSYMDMSQYANRRSSDISGGEQQRVAICRAIANKPLIILADEP 173 + A + + +R +LL+ + + +R ++ +S G++Q + I +A P ++L DEP Sbjct: 116 LFARLRAEER-RRIDELLATIGLGDERDRLAALLSHGQKQWLEIGMLLAQDPKLLLLDEP 174 Query: 174 TGNLDLKTAQQVFSILKYLVVRSGLAALIATHNHDLASQMDRQITI 219 + ++ +LK L + L+ H+ ++ ++T+ Sbjct: 175 VAGMTDAETEKTAELLKSL--AGKHSILVVEHDMGFVREIADKVTV 218 >gnl|CDD|33909 COG4167, SapF, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]. Length = 267 Score = 60.0 bits (145), Expect = 5e-10 Identities = 47/204 (23%), Positives = 99/204 (48%), Gaps = 10/204 (4%) Query: 23 FPVLENVHLSLKKGEIVALVSPSGTGKSTILH-IAGLLEVPDQGNVIIANQLCNKLSDDK 81 ++ V +L++G+ +A++ +G+GKST+ +AG++E P G ++I + L Sbjct: 26 VEAVKPVSFTLREGQTLAIIGENGSGKSTLAKMLAGMIE-PTSGEILINDHP---LHFGD 81 Query: 82 KSFLRCSKIGFVYQEHRLLMDFSVIENIIFPQIIAGINHKTAYQRAMDLLSYMDM----S 137 SF R +I ++Q+ ++ + I + QR + + M Sbjct: 82 YSF-RSKRIRMIFQDPNTSLNPRLRIGQILDFPLRLNTDLEPEQRRKQIFETLRMVGLLP 140 Query: 138 QYANRRSSDISGGEQQRVAICRAIANKPLIILADEPTGNLDLKTAQQVFSILKYLVVRSG 197 +AN ++ G++QRVA+ RA+ +P II+ADE +LD+ Q+ +++ L + G Sbjct: 141 DHANYYPHMLAPGQKQRVALARALILRPKIIIADEALASLDMSMRSQLINLMLELQEKQG 200 Query: 198 LAALIATHNHDLASQMDRQITIRD 221 ++ + T + + + Q+ + Sbjct: 201 ISYIYVTQHIGMIKHISDQVLVMH 224 >gnl|CDD|72992 cd03233, ABC_PDR_domain1, The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.. Length = 202 Score = 59.8 bits (145), Expect = 6e-10 Identities = 44/223 (19%), Positives = 87/223 (39%), Gaps = 32/223 (14%) Query: 5 EVLLLQNVKHSYRQVGKP-FPVLENVHLSLKKGEIVALVSPSGTGKSTIL-HIAGLLEVP 62 L G+ P+L++ +K GE+V ++ G+G ST+L +A E Sbjct: 1 ASTLSWRNISFTTGKGRSKIPILKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANRTE-- 58 Query: 63 DQGNVIIANQLCNKLSDDKKSFLRC-SKIGFVYQEHRLLMDFSVIENIIFPQIIAGINHK 121 GNV + + K+ + +I +V +E +V E + F G Sbjct: 59 --GNVSVEGDIHYNGIPYKEFAEKYPGEIIYVSEEDVHFPTLTVRETLDFALRCKG---- 112 Query: 122 TAYQRAMDLLSYMDMSQYANRRSSDISGGEQQRVAICRAIANKPLIILADEPTGNLDLKT 181 N ISGGE++RV+I A+ ++ ++ D T LD T Sbjct: 113 -------------------NEFVRGISGGERKRVSIAEALVSRASVLCWDNSTRGLDSST 153 Query: 182 AQQVFSILKYLVVRSGLAALIATH--NHDLASQMDRQITIRDG 222 A ++ ++ + ++ + + ++ D+ + + +G Sbjct: 154 ALEILKCIRTMADVLKTTTFVSLYQASDEIYDLFDKVLVLYEG 196 >gnl|CDD|73050 cd03291, ABCC_CFTR1, The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.. Length = 282 Score = 58.9 bits (142), Expect = 1e-09 Identities = 46/171 (26%), Positives = 91/171 (53%), Gaps = 30/171 (17%) Query: 24 PVLENVHLSLKKGEIVALVSPSGTGKSTILH-IAGLLEVPDQGNVIIANQLCNKLSDDKK 82 PVL+N++L ++KGE++A+ +G+GK+++L I G LE P +G + + ++ Sbjct: 51 PVLKNINLKIEKGEMLAITGSTGSGKTSLLMLILGELE-PSEGKIKHSGRI--------- 100 Query: 83 SFLRCSKIGFVYQEHRLLMDFSVIENIIFPQIIAGINHKTAYQRAMDLLSYMDMSQYANR 142 SF S+ ++ M ++ ENIIF +K+ + A L D++++ + Sbjct: 101 SF--SSQFSWI-------MPGTIKENIIFGVSYDEYRYKSVVK-ACQLEE--DITKFPEK 148 Query: 143 RSS-------DISGGEQQRVAICRAIANKPLIILADEPTGNLDLKTAQQVF 186 ++ +SGG++ R+++ RA+ + L D P G LD+ T +++F Sbjct: 149 DNTVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEKEIF 199 >gnl|CDD|72982 cd03223, ABCD_peroxisomal_ALDP, Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asymptomatic).. Length = 166 Score = 58.2 bits (141), Expect = 2e-09 Identities = 45/198 (22%), Positives = 79/198 (39%), Gaps = 54/198 (27%) Query: 24 PVLENVHLSLKKGEIVALVSPSGTGKSTILH-IAGLLEVPDQGNVIIANQLCNKLSDDKK 82 +L+++ +K G+ + + PSGTGKS++ +AGL G + + Sbjct: 15 VLLKDLSFEIKPGDRLLITGPSGTGKSSLFRALAGLWPW-GSGRIGM------------- 60 Query: 83 SFLRCSKIGFVYQEHRLLMDFSVIENIIFPQIIAGINHKTAYQRAMDLLSYMDMSQYANR 142 + F+ Q L ++ E +I+P D+LS Sbjct: 61 --PEGEDLLFLPQ-RPYLPLGTLREQLIYPW--------------DDVLS---------- 93 Query: 143 RSSDISGGEQQRVAICRAIANKPLIILADEPTGNLDLKTAQQVFSILKYLVVRSGLAALI 202 GGEQQR+A R + +KP + DE T LD ++ +++ +LK +I Sbjct: 94 ------GGEQQRLAFARLLLHKPKFVFLDEATSALDEESEDRLYQLLK-----ELGITVI 142 Query: 203 A-THNHDLASQMDRQITI 219 + H L DR + + Sbjct: 143 SVGHRPSLWKFHDRVLDL 160 >gnl|CDD|72995 cd03236, ABC_RNaseL_inhibitor_domain1, The ATPase domain 1 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.. Length = 255 Score = 53.7 bits (129), Expect = 4e-08 Identities = 46/190 (24%), Positives = 79/190 (41%), Gaps = 26/190 (13%) Query: 34 KKGEIVALVSPSGTGKSTILHIAGLLEVPDQGNVIIANQLCNKLS-DDKKSFLRCSKIGF 92 ++G+++ LV P+G GKST L I P+ G + D+ R S++ Sbjct: 24 REGQVLGLVGPNGIGKSTALKILAGKLKPNLGK------FDDPPDWDEILDEFRGSEL-- 75 Query: 93 VYQEHRLLMDFSVIENIIFPQ------------IIAGINHKTAYQRAMDLLSYMDMSQYA 140 Q + + ++ I+ PQ + + K + +L+ +++ Sbjct: 76 --QNYFTKLLEGDVKVIVKPQYVDLIPKAVKGKVGELLKKKDERGKLDELVDQLELRHVL 133 Query: 141 NRRSSDISGGEQQRVAICRAIANKPLIILADEPTGNLDLKTAQQVFSILKYLVVRSGLAA 200 +R +SGGE QRVAI A+A DEP+ LD+K +++ L Sbjct: 134 DRNIDQLSGGELQRVAIAAALARDADFYFFDEPSSYLDIKQRLNAARLIREL-AEDDNYV 192 Query: 201 LIATHNHDLA 210 L+ HDLA Sbjct: 193 LVV--EHDLA 200 >gnl|CDD|35286 KOG0063, KOG0063, KOG0063, RNAse L inhibitor, ABC superfamily [RNA processing and modification]. Length = 592 Score = 52.2 bits (125), Expect = 1e-07 Identities = 41/173 (23%), Positives = 77/173 (44%), Gaps = 14/173 (8%) Query: 34 KKGEIVALVSPSGTGKSTILHIAGLLEVPDQGNVIIANQLCNKLSDDKKSFLRCSKIGFV 93 + G+++ LV +G GKST L I + P+ G L+ + S L+ + Sbjct: 98 RPGQVLGLVGTNGIGKSTALKILAGKQKPNLGRYDNPPDWQEILTYFRGSELQNYFTKIL 157 Query: 94 YQEHRLLMDFSVIENIIFPQIIAG-----INHKTAYQRAMDLLSYMDMSQYANRRSSDIS 148 + ++ ++ I P+ + G ++ K ++ +D++ +R +S Sbjct: 158 EDNLKAIIKPQYVDQI--PRAVKGTVGSLLDRKDERDNKEEVCDQLDLNNLLDREVEQLS 215 Query: 149 GGEQQRVAICRAIANKPLIILADEPTGNLD----LKTAQQVFSIL---KYLVV 194 GGE QR AI K + + DEP+ LD LK A + S++ +Y++V Sbjct: 216 GGELQRFAIAMVCVQKADVYMFDEPSSYLDVKQRLKAAITIRSLINPDRYIIV 268 Score = 46.4 bits (110), Expect = 6e-06 Identities = 46/209 (22%), Positives = 88/209 (42%), Gaps = 40/209 (19%) Query: 26 LENVHLSLKKG-----EIVALVSPSGTGKSTILH-IAGLLEVPDQG------NVIIANQL 73 + + L +K G EI+ ++ +GTGK+T + +AG L+ PD+G NV Q Sbjct: 352 VGDFCLCIKVGEFSDSEIIVMLGENGTGKTTFIRMLAGRLK-PDEGGEIPVLNVSYKPQK 410 Query: 74 CNKLSDDKKSFLRCSKIGFVYQEHRLLMDFSVIENIIFPQIIAGINHKTAYQRAMDLLSY 133 + + L +KI Y + + D V++ + II Sbjct: 411 ISPKREGTVRQLLHTKIRDAYMHPQFVND--VMKPLQIENII------------------ 450 Query: 134 MDMSQYANRRSSDISGGEQQRVAICRAIANKPLIILADEPTGNLDLKTAQQVFSILKYLV 193 ++ +SGGE QRVA+ + + L DEP+ LD + ++K + Sbjct: 451 -------DQEVQGLSGGELQRVALALCLGKPADVYLIDEPSAYLDSEQRIIASKVIKRFI 503 Query: 194 VRSGLAALIATHNHDLASQMDRQITIRDG 222 + + A + H+ +A+ + ++ + +G Sbjct: 504 LHAKKTAFVVEHDFIMATYLADRVIVFEG 532 >gnl|CDD|35289 KOG0066, KOG0066, KOG0066, eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]. Length = 807 Score = 52.0 bits (124), Expect = 1e-07 Identities = 47/170 (27%), Positives = 87/170 (51%), Gaps = 18/170 (10%) Query: 25 VLENVHLSLKKGEIVALVSPSGTGKSTIL-HIAG-LLEVPDQGNVIIANQLCNKLSDDK- 81 + N L++ G LV P+G GK+T+L HIA L +P +V++ Q ++D Sbjct: 279 LFVNASLTIVYGRRYGLVGPNGMGKTTLLKHIAARALAIPPNIDVLLCEQ--EVVADSTS 336 Query: 82 --KSFLRCSK--IGFVYQEHRLLMDF-----SVIENI--IFPQIIAGINHKTAYQRAMDL 130 + L+ K + + +E +L+ + E + + ++ A I +A RA + Sbjct: 337 AIDTVLKADKKRLALLEEEAKLMSQIEEGDTTAAERLKEVADELRA-IGADSAEARARRI 395 Query: 131 LSYMDMS-QYANRRSSDISGGEQQRVAICRAIANKPLIILADEPTGNLDL 179 L+ + S + R ++ SGG + RV++ RA+ +P +++ DEPT +LDL Sbjct: 396 LAGLGFSKEMQERPTTKFSGGWRMRVSLARALFLEPTLLMLDEPTNHLDL 445 Score = 51.6 bits (123), Expect = 1e-07 Identities = 47/180 (26%), Positives = 85/180 (47%), Gaps = 30/180 (16%) Query: 6 VLLLQNVKHSYRQVGKPFPVLENVHLSLKKGEIVALVSPSGTGKSTILH-IAGLLEVPDQ 64 VL L +V Y G+ P+ + + + +A+V P+G GKST+L + G L+ P+ Sbjct: 586 VLGLHDVTFGYP--GQK-PLFKKLDFGIDMDSRIAIVGPNGVGKSTLLKLLIGKLD-PND 641 Query: 65 GNVIIANQLCNKLSDDKKSFLRCSKIGFVYQEH--RLLMDFSVIENIIFPQIIAGINHKT 122 G + ++L +IG+ Q L + + +E + Q + Sbjct: 642 GELRKNHRL---------------RIGWFDQHANEALNGEETPVE---YLQRKFNLP--- 680 Query: 123 AYQRAMDLLSYMDMSQYANR-RSSDISGGEQQRVAICRAIANKPLIILADEPTGNLDLKT 181 YQ A L ++ +A+ + D+SGG++ RVA+ P +++ DEPT NLD+++ Sbjct: 681 -YQEARKQLGTFGLASHAHTIKIKDLSGGQKARVALAELALGGPDVLILDEPTNNLDIES 739 >gnl|CDD|34240 COG4615, PvdE, ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism]. Length = 546 Score = 51.1 bits (122), Expect = 2e-07 Identities = 49/221 (22%), Positives = 101/221 (45%), Gaps = 14/221 (6%) Query: 7 LLLQNVKHSYRQVGKPFPVLENVHLSLKKGEIVALVSPSGTGKSTILHIAGLLEVPDQGN 66 L L+NV+ +Y+ F V ++L++K+GE+V L+ +G+GKST+ + L P G Sbjct: 323 LELRNVRFAYQDNA--FHV-GPINLTIKRGELVFLIGGNGSGKSTLAMLLTGLYQPQSGE 379 Query: 67 VIIANQLCNKLSDDKKSFLRCSKIGFVYQEHRLLMDFSVIENIIFPQIIAGINHKTAYQR 126 +++ + +S ++ R V+ ++ L E PQ+I + Sbjct: 380 ILLDGKP---VSAEQLEDYR-KLFSAVFSDYHLFDQLLGPEGKASPQLIEKWLQRLELA- 434 Query: 127 AMDLLSYMDMSQYANRRSSDISGGEQQRVAICRAIANKPLIILADEPTGNLDLKTAQQVF 186 S D + +S G+++R+A+ A+ + I++ DE + D ++ + Sbjct: 435 --HKTSLND----GRFSNLKLSTGQKKRLALLLALLEERDILVLDEWAADQDPAFRREFY 488 Query: 187 SILKYLVVRSGLAALIATHNHDLASQMDRQITIRDGMIADL 227 +L L+ G +H+ DR + +R+G +++L Sbjct: 489 QVLLPLLKEQGKTIFAISHDDHYFIHADRLLEMRNGQLSEL 529 >gnl|CDD|35285 KOG0062, KOG0062, KOG0062, ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism, Translation, ribosomal structure and biogenesis]. Length = 582 Score = 51.1 bits (122), Expect = 3e-07 Identities = 38/162 (23%), Positives = 70/162 (43%), Gaps = 30/162 (18%) Query: 25 VLENVHLSLKKGEIVALVSPSGTGKSTIL------HIAGLLEVPDQGNVIIANQLCNKLS 78 +L +L+L +G LV +G GKST+L ++G + S Sbjct: 95 LLNKANLTLSRGRRYGLVGRNGIGKSTLLRAIANGQVSGFHVEQEVRGDDTEALQSVLES 154 Query: 79 DDKKSFLRCSKIGFVYQEHRLLMDFSVIENIIFPQIIAGINHKTAYQRAMDLLSYMDMSQ 138 D ++ F+ +E +++AG+ + Y + + L + Q Sbjct: 155 D-------TERLDFLAEE---------------KELLAGLTLEEIYDKILAGLGFTPEMQ 192 Query: 139 YANRRSSDISGGEQQRVAICRAIANKPLIILADEPTGNLDLK 180 + + +SGG + R+A+ RA+ KP ++L DEPT +LD+ Sbjct: 193 --LQPTKSLSGGWRMRLALARALFAKPDLLLLDEPTNHLDVV 232 Score = 47.6 bits (113), Expect = 3e-06 Identities = 46/224 (20%), Positives = 91/224 (40%), Gaps = 25/224 (11%) Query: 3 SAEVLLLQNVKHSYRQVGKPFPVLENVHLSLKKGEIVALVSPSGTGKSTILHIAGLLEVP 62 S L + V Y + + + L + ++ V +G GKST+L I P Sbjct: 359 SPPNLRISYVAFEY--TPSEYQWRKQLGLDRESDSRISRVGENGDGKSTLLKILKGDLTP 416 Query: 63 DQGNVIIANQLCNKLSDDKKSFLRCSKIGFVYQEHRLLMDFSVIENIIFPQIIAGINHKT 122 +G V +L +I + Q H +D +V + G + Sbjct: 417 TRGIVGRHPRL---------------RIKYFAQHHVDFLDKNVNAVDFMEKSFPGKTEEE 461 Query: 123 AYQRAMDLLSYMDMSQYANRRSSDISGGEQQRVAICRAIANKPLIILADEPTGNLDLKTA 182 +R + + A + + +SGG++ RVA N P +++ DEPT +LD + Sbjct: 462 -IRRHLGSFGLS--GELALQSIASLSGGQKSRVAFAACTWNNPHLLVLDEPTNHLDRDS- 517 Query: 183 QQVFSILKYLVVRSGLAALIATHNHDLASQMDRQI-TIRDGMIA 225 + ++ K L +G ++ +H+ + S + +++ + DG + Sbjct: 518 --LGALAKALKNFNG-GVVLVSHDEEFISSLCKELWVVEDGKVT 558 >gnl|CDD|37566 KOG2355, KOG2355, KOG2355, Predicted ABC-type transport, ATPase component/CCR4 associated factor [General function prediction only, Transcription]. Length = 291 Score = 49.6 bits (118), Expect = 8e-07 Identities = 53/216 (24%), Positives = 87/216 (40%), Gaps = 26/216 (12%) Query: 24 PVLENVHLSLKKGEIVALVSPSGTGKSTILHIAGLLEVPDQGNVIIANQLCNKLSDDKKS 83 P+ + +L L G LV +G GK+T+L I + G V + S + Sbjct: 28 PIFFDFNLDLPAGSRCLLVGANGAGKTTLLKILSGKHMVGGGVVQV-----LGRSAFHDT 82 Query: 84 FLRCS-----------KIGFVYQEHRLLMDFSVIENIIFPQIIAGINHKTAYQRAMDLLS 132 L S K + E L D S E++IF + G + +R L+ Sbjct: 83 SLESSGDLSYLGGEWSKTVGIAGEVPLQGDISA-EHMIFG--VGGDD----PERREKLID 135 Query: 133 YMDMSQYANRRSSDISGGEQQRVAICRAIANKPLIILADEPTGNLDLKTAQQVFSILKYL 192 +D+ R +S G+++RV IC + ++L DE T +LD+ + LK Sbjct: 136 ILDID--LRWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEVTVDLDVLARADLLEFLKEE 193 Query: 193 VVRSGLAALIATHNHD-LASQMDRQITIRDGMIADL 227 + G + ATH D L + + I+ G + D Sbjct: 194 CEQRGATIVYATHIFDGLETWPTHLVYIKSGKLVDN 229 >gnl|CDD|72997 cd03238, ABC_UvrA, The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.. Length = 176 Score = 47.2 bits (112), Expect = 4e-06 Identities = 43/196 (21%), Positives = 76/196 (38%), Gaps = 47/196 (23%) Query: 26 LENVHLSLKKGEIVALVSPSGTGKSTILHIAGLLEVPDQGNVIIANQLCNKLSDDKKSFL 85 L+N+ +S+ +V + SG+GKST++ N + +L F Sbjct: 11 LQNLDVSIPLNVLVVVTGVSGSGKSTLV------------NEGLYASGKARLISFLPKFS 58 Query: 86 RCSKIGFVYQEHRLLMDFSVIENIIFPQIIAGINHKTAYQRAMDLLSYMDMSQYANRRSS 145 R +K+ F+ Q L I G+ + T ++ S Sbjct: 59 R-NKLIFIDQLQFL--------------IDVGLGYLTL-----------------GQKLS 86 Query: 146 DISGGEQQRVAICRAIAN--KPLIILADEPTGNLDLKTAQQVFSILKYLVVRSGLAALIA 203 +SGGE QRV + + + + + DEP+ L + Q+ ++K L + G ++ Sbjct: 87 TLSGGELQRVKLASELFSEPPGTLFILDEPSTGLHQQDINQLLEVIKGL-IDLGNTVILI 145 Query: 204 THNHDLASQMDRQITI 219 HN D+ S D I Sbjct: 146 EHNLDVLSSADWIIDF 161 >gnl|CDD|33894 COG4138, BtuD, ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism]. Length = 248 Score = 46.5 bits (110), Expect = 6e-06 Identities = 57/214 (26%), Positives = 95/214 (44%), Gaps = 30/214 (14%) Query: 6 VLLLQNVKHSYRQVGKPFPVLENVHLSLKKGEIVALVSPSGTGKSTIL-HIAGLLEVPDQ 64 ++ L +V S R L + ++ GEI+ LV P+G GKST+L +AG+ Sbjct: 3 LMQLNDVAESTR--------LGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMT--SGS 52 Query: 65 GNVIIANQLCNKLSDDKKSFLRCSKIGFVYQEHRLLMDFSVIENIIFPQIIAGINHKTAY 124 G++ A Q S + + R ++ Q+ V + Q KT Sbjct: 53 GSIQFAGQPLEAWSATELARHR----AYLSQQQTPPFAMPVWHYLTLHQ-----PDKTRT 103 Query: 125 QRAMDLLSYMDMSQYANRRSSDISGGEQQRV---AICRAI---AN-KPLIILADEPTGNL 177 + D+ + + R ++ +SGGE QRV A+ I AN ++L DEP +L Sbjct: 104 ELLNDVAGALALDDKLGRSTNQLSGGEWQRVRLAAVVLQITPDANPAGQLLLLDEPMNSL 163 Query: 178 DLKTAQQVFSILKYLVVRSGLAALIATH--NHDL 209 D+ + +L L + GLA ++++H NH L Sbjct: 164 DVAQQSALDRLLSAL-CQQGLAIVMSSHDLNHTL 196 >gnl|CDD|177053 CHL00131, ycf16, sulfate ABC transporter protein; Validated. Length = 252 Score = 45.8 bits (109), Expect = 1e-05 Identities = 48/215 (22%), Positives = 87/215 (40%), Gaps = 57/215 (26%) Query: 23 FPVLENVHLSLKKGEIVALVSPSGTGKSTILH-IAG-----LLEVPDQGNVIIANQLCNK 76 +L+ ++LS+ KGEI A++ P+G+GKST+ IAG +LE G+++ + Sbjct: 20 NEILKGLNLSINKGEIHAIMGPNGSGKSTLSKVIAGHPAYKILE----GDILFKGESILD 75 Query: 77 LSDDKKS---------------------FLRCSKIGFVYQEHRLLMDFSVIENIIFPQII 115 L ++++ FLR Y R ++ + F +II Sbjct: 76 LEPEERAHLGIFLAFQYPIEIPGVSNADFLR-----LAYNSKRKFQGLPELDPLEFLEII 130 Query: 116 AGINHKTAYQRAMDLLSYMDMSQ-YANRRSSD-ISGGEQQRVAICRAIANKPLIILADEP 173 + L + M + +R ++ SGGE++R I + + + DE Sbjct: 131 ------------NEKLKLVGMDPSFLSRNVNEGFSGGEKKRNEILQMALLDSELAILDET 178 Query: 174 TGNLD---LKTAQQVFSILKYLVVRSGLAALIATH 205 LD LK + + L S + ++ TH Sbjct: 179 DSGLDIDALKIIAEGINKLM----TSENSIILITH 209 >gnl|CDD|35287 KOG0064, KOG0064, KOG0064, Peroxisomal long-chain acyl-CoA transporter, ABC superfamily [Lipid transport and metabolism]. Length = 728 Score = 45.0 bits (106), Expect = 2e-05 Identities = 43/196 (21%), Positives = 77/196 (39%), Gaps = 32/196 (16%) Query: 25 VLENVHLSLKKGEIVALVSPSGTGKSTILHIAGLLEVPDQGNVIIANQLCNKLSDDKKSF 84 ++ + ++ G + + P+G GKS++ I G L G + I Sbjct: 497 LVPKLTFQIEPGMHLLITGPNGCGKSSLFRILGGLWPVYNGLLSIP-------------- 542 Query: 85 LRCSKIGFVYQEHRLLMDFSVI-ENIIFPQIIAGINHK-TAYQRAMDLLSYMDMSQYANR 142 R + I ++ Q R M + + II+P + K Q +L + + R Sbjct: 543 -RPNNIFYIPQ--RPYMSGGTLRDQIIYPDSSEQMKRKGYTDQDLEAILDIVHLEHILQR 599 Query: 143 RS--------SDI-SGGEQQRVAICRAIANKPLIILADEPTGNLDLKTAQQVFSILKYLV 193 D+ SGGE+QR+ + R ++P L DE T + + ++F K Sbjct: 600 EGGWDAVRDWKDVLSGGEKQRMGMARMFYHRPKYALLDECTSAVSIDVEGKIFQAAK--- 656 Query: 194 VRSGLAALIATHNHDL 209 +G++ L TH L Sbjct: 657 -DAGISLLSITHRPSL 671 >gnl|CDD|73061 cd03369, ABCC_NFT1, Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.. Length = 207 Score = 44.5 bits (105), Expect = 2e-05 Identities = 46/208 (22%), Positives = 87/208 (41%), Gaps = 31/208 (14%) Query: 24 PVLENVHLSLKKGEIVALVSPSGTGKSTI-LHIAGLLEVPDQGNVIIANQLCNKLSDDKK 82 PVL+NV +K GE + +V +G GKST+ L + LE ++G + I + + + Sbjct: 22 PVLKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRFLE-AEEGKIEIDGIDISTIPLED- 79 Query: 83 SFLRCSKIGFVYQEHRLLMDFSVIENIIFPQIIAGINHKTAYQRAMDLLSYMDMSQYANR 142 LR S + + Q+ L I + + P + Y D Y Sbjct: 80 --LR-SSLTIIPQDPTLFS--GTIRSNLDP-----------FDE------YSDEEIYGAL 117 Query: 143 RSS----DISGGEQQRVAICRAIANKPLIILADEPTGNLDLKTAQQVFSILKYLVVRSGL 198 R S ++S G++Q + + RA+ +P +++ DE T ++D T + ++ + Sbjct: 118 RVSEGGLNLSQGQRQLLCLARALLKRPRVLVLDEATASIDYATDALIQKTIREEF--TNS 175 Query: 199 AALIATHNHDLASQMDRQITIRDGMIAD 226 L H D+ + + G + + Sbjct: 176 TILTIAHRLRTIIDYDKILVMDAGEVKE 203 >gnl|CDD|73030 cd03271, ABC_UvrA_II, The excision repair protein UvrA domain II; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases.. Length = 261 Score = 44.0 bits (104), Expect = 3e-05 Identities = 51/236 (21%), Positives = 96/236 (40%), Gaps = 54/236 (22%) Query: 26 LENVHLSLKKGEIVALVSPSGTGKSTILH------IAGLL----EVPDQGNVIIANQLCN 75 L+N+ + + G + + SG+GKS++++ +A L E P + I + + Sbjct: 11 LKNIDVDIPLGVLTCVTGVSGSGKSSLINDTLYPALARRLHLKKEQPGNHDRIEGLEHID 70 Query: 76 KLSD---------------------DKKSFLRCSKI-GFVYQEHRL-----------LMD 102 K+ D+ L C G Y L ++D Sbjct: 71 KVIVIDQSPIGRTPRSNPATYTGVFDEIRELFCEVCKGKRYNRETLEVRYKGKSIADVLD 130 Query: 103 FSVIENIIFPQIIAGINHKTAYQRAMDL-LSYMDMSQYANRRSSDISGGEQQRVAICRAI 161 +V E + F + I I K Q D+ L Y+ + Q ++ +SGGE QR+ + + + Sbjct: 131 MTVEEALEFFENIPKIARKL--QTLCDVGLGYIKLGQ----PATTLSGGEAQRIKLAKEL 184 Query: 162 ANK---PLIILADEPTGNLDLKTAQQVFSILKYLVVRSGLAALIATHNHDLASQMD 214 + + + + DEPT L +++ +L+ LV + G ++ HN D+ D Sbjct: 185 SKRSTGKTLYILDEPTTGLHFHDVKKLLEVLQRLVDK-GNTVVVIEHNLDVIKCAD 239 >gnl|CDD|72981 cd03222, ABC_RNaseL_inhibitor, The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.. Length = 177 Score = 42.7 bits (100), Expect = 9e-05 Identities = 29/112 (25%), Positives = 48/112 (42%), Gaps = 5/112 (4%) Query: 111 FPQIIAGINHKTAYQRAMDLLSYMDMSQYANRRSSDISGGEQQRVAICRAIANKPLIILA 170 +I+AG D ++ + QY D+SGGE QRVAI A+ L Sbjct: 41 AVKILAGQLIPNGDNDEWDGITPVYKPQYI-----DLSGGELQRVAIAAALLRNATFYLF 95 Query: 171 DEPTGNLDLKTAQQVFSILKYLVVRSGLAALIATHNHDLASQMDRQITIRDG 222 DEP+ LD++ ++ L AL+ H+ + + +I + +G Sbjct: 96 DEPSAYLDIEQRLNAARAIRRLSEEGKKTALVVEHDLAVLDYLSDRIHVFEG 147 Score = 35.7 bits (82), Expect = 0.009 Identities = 13/35 (37%), Positives = 23/35 (65%) Query: 33 LKKGEIVALVSPSGTGKSTILHIAGLLEVPDQGNV 67 +K+GE++ +V P+GTGK+T + I +P+ N Sbjct: 22 VKEGEVIGIVGPNGTGKTTAVKILAGQLIPNGDND 56 >gnl|CDD|35283 KOG0060, KOG0060, KOG0060, Long-chain acyl-CoA transporter, ABC superfamily (involved in peroxisome organization and biogenesis) [Lipid transport and metabolism, General function prediction only]. Length = 659 Score = 41.1 bits (96), Expect = 2e-04 Identities = 35/178 (19%), Positives = 70/178 (39%), Gaps = 25/178 (14%) Query: 25 VLENVHLSLKKGEIVALVSPSGTGKSTILHIAGLLEVPDQGNVIIANQLCNKLSDDKKSF 84 ++EN+ L + G+ + + PSG GK+++L + G L G + K Sbjct: 450 LIENLSLEVPSGQNLLITGPSGCGKTSLLRVLGGLWPSTGGKL-------------TKPT 496 Query: 85 LRCSKIGFVYQEHRLLMDFSVIENIIFPQIIAGINHKTAY-QRAMDLLSYMDMSQYANRR 143 K F + + ++ + +I+P ++ K+A + + +L + + R Sbjct: 497 DGGPKDLFFLPQRPYMTLGTLRDQVIYPLKAEDMDSKSASDEDILRILENVQLGHLLERE 556 Query: 144 -----------SSDISGGEQQRVAICRAIANKPLIILADEPTGNLDLKTAQQVFSILK 190 +S GEQQR+A R +KP + DE T + ++ + Sbjct: 557 GGLDQQVDWDWMDVLSPGEQQRLAFARLFYHKPKFAILDECTSAVTEDVEGALYRKCR 614 >gnl|CDD|29988 cd01122, GP4d_helicase, GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.. Length = 271 Score = 40.3 bits (94), Expect = 4e-04 Identities = 17/39 (43%), Positives = 25/39 (64%) Query: 15 SYRQVGKPFPVLENVHLSLKKGEIVALVSPSGTGKSTIL 53 S +V PFPVL + L+KGE++ L + +G GK+T L Sbjct: 9 SNEEVWWPFPVLNKLTKGLRKGELIILTAGTGVGKTTFL 47 >gnl|CDD|72986 cd03227, ABC_Class2, ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.. Length = 162 Score = 40.3 bits (94), Expect = 5e-04 Identities = 24/79 (30%), Positives = 39/79 (49%), Gaps = 7/79 (8%) Query: 147 ISGGEQQRVAICRAIAN-----KPLIILADEPTGNLDLKTAQQVFSILKYLVVRSGLAAL 201 +SGGE++ A+ +A +PL IL DE LD + Q + + +V G + Sbjct: 78 LSGGEKELSALALILALASLKPRPLYIL-DEIDRGLDPRDGQALAEAILEHLV-KGAQVI 135 Query: 202 IATHNHDLASQMDRQITIR 220 + TH +LA D+ I I+ Sbjct: 136 VITHLPELAELADKLIHIK 154 >gnl|CDD|73038 cd03279, ABC_sbcCD, SbcCD and other Mre11/Rad50 (MR) complexes are implicated in the metabolism of DNA ends. They cleave ends sealed by hairpin structures and are thought to play a role in removing protein bound to DNA termini.. Length = 213 Score = 40.2 bits (94), Expect = 5e-04 Identities = 36/201 (17%), Positives = 73/201 (36%), Gaps = 30/201 (14%) Query: 32 SLKKGEIVALVSPSGTGKSTILHIAGLLEVPDQGNVIIANQLCNKLSDDKKSFLRCSKIG 91 L + + P+G GKSTIL I L K + S Sbjct: 24 GLDNNGLFLICGPTGAGKSTILD-------------AITYALYGKTPRYGRQENLRSVFA 70 Query: 92 FVYQEHRLLMDFSVIENIIFPQII--AGINHKTAYQRAMDLLSYMDMSQYANRRSSDISG 149 + F + ++ G+++ + R + LL + ++ R S +SG Sbjct: 71 PGEDTAEVSFTFQL--GGKKYRVERSRGLDYDQ-FTRIV-LLPQGEFDRFLARPVSTLSG 126 Query: 150 GEQQRVAICRAIANKPLI----------ILADEPTGNLDLKTAQQVFSILKYLVVRSGLA 199 GE ++ A+A ++ + DE G LD + + V + L+ L+ Sbjct: 127 GETFLASLSLALALSEVLQNRGGARLEALFIDEGFGTLDPEALEAVATALE-LIRTENRM 185 Query: 200 ALIATHNHDLASQMDRQITIR 220 + +H +L ++ +++ + Sbjct: 186 VGVISHVEELKERIPQRLEVI 206 >gnl|CDD|73048 cd03289, ABCC_CFTR2, The CFTR subfamily domain 2. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.. Length = 275 Score = 39.6 bits (92), Expect = 7e-04 Identities = 46/204 (22%), Positives = 94/204 (46%), Gaps = 12/204 (5%) Query: 25 VLENVHLSLKKGEIVALVSPSGTGKSTILHIAGLLEVPDQGNVIIANQLCNKLSDDK--K 82 VLEN+ S+ G+ V L+ +G+GKST+L A L + +G++ I N + K K Sbjct: 19 VLENISFSISPGQRVGLLGRTGSGKSTLLS-AFLRLLNTEGDIQIDGVSWNSVPLQKWRK 77 Query: 83 SFLRCSKIGFVYQ-EHRLLMD-FSVIENIIFPQIIAGINHKTAYQRAMDLLSYMDMSQYA 140 +F + F++ R +D + + ++ + K+ ++ L ++ + Sbjct: 78 AFGVIPQKVFIFSGTFRKNLDPYGKWSDEEIWKVAEEVGLKSVIEQFPGQLDFVLVDG-- 135 Query: 141 NRRSSDISGGEQQRVAICRAIANKPLIILADEPTGNLDLKTAQQVFSILKYLVVRSGLAA 200 +S G +Q + + R++ +K I+L DEP+ +LD T Q + LK + Sbjct: 136 ---GCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPITYQVIRKTLKQAF--ADCTV 190 Query: 201 LIATHNHDLASQMDRQITIRDGMI 224 +++ H + + R + I + + Sbjct: 191 ILSEHRIEAMLECQRFLVIEENKV 214 >gnl|CDD|30768 COG0419, SbcC, ATPase involved in DNA repair [DNA replication, recombination, and repair]. Length = 908 Score = 39.3 bits (91), Expect = 9e-04 Identities = 23/91 (25%), Positives = 42/91 (46%), Gaps = 11/91 (12%) Query: 139 YANRRSSDISGGEQQRVAICRAIA---------NKPLIILADEPTGNLDLKTAQQVFSIL 189 R +SGGE+ ++ +A L+ L DEP G LD + +++ IL Sbjct: 808 GEVRPIKTLSGGERFLASLALRLALSDLLQGRARLELLFL-DEPFGTLDEERLEKLAEIL 866 Query: 190 KYLVVRSGLAALIATHNHDLASQMDRQITIR 220 + L + G +I +H +L + D +I ++ Sbjct: 867 EEL-LSDGRQIIIISHVEELKERADVRIRVK 896 >gnl|CDD|73029 cd03270, ABC_UvrA_I, The excision repair protein UvrA domain I; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.. Length = 226 Score = 38.2 bits (89), Expect = 0.002 Identities = 48/219 (21%), Positives = 92/219 (42%), Gaps = 43/219 (19%) Query: 26 LENVHLSLKKGEIVALVSPSGTGKSTIL---------------------HIAGLLEVPDQ 64 L+NV + + + ++V + SG+GKS++ G ++ PD Sbjct: 11 LKNVDVDIPRNKLVVITGVSGSGKSSLAFDTIYAEGQRRYVESLSAYARQFLGQMDKPDV 70 Query: 65 GNVIIANQLCNKLSDDKKSFLRC--SKIGFVYQEHRLLMDFSVIENIIFPQIIAGINHKT 122 ++ L ++ D+K+ R S +G V + + L ++F ++ GI + Sbjct: 71 DSI---EGLSPAIAIDQKTTSRNPRSTVGTVTEIYDYL-------RLLFARV--GIRERL 118 Query: 123 AYQRAMDLLSYMDMSQYANRRSSDISGGEQQRVAICRAIANK--PLIILADEPTGNLDLK 180 + + L Y+ +S R + +SGGE QR+ + I + ++ + DEP+ L + Sbjct: 119 GFLVDVGL-GYLTLS----RSAPTLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHPR 173 Query: 181 TAQQVFSILKYLVVRSGLAALIATHNHDLASQMDRQITI 219 ++ LK L G L+ H+ D D I I Sbjct: 174 DNDRLIETLKRL-RDLGNTVLVVEHDEDTIRAADHVIDI 211 >gnl|CDD|30527 COG0178, UvrA, Excinuclease ATPase subunit [DNA replication, recombination, and repair]. Length = 935 Score = 36.3 bits (84), Expect = 0.008 Identities = 37/119 (31%), Positives = 58/119 (48%), Gaps = 13/119 (10%) Query: 101 MDFSVIENIIFPQIIAGINHKTAYQRAMDL-LSYMDMSQYANRRSSDISGGEQQRVAICR 159 +D +V E + F + I I K Q +D+ L Y+ + Q A + +SGGE QRV + + Sbjct: 782 LDMTVEEALEFFEAIPKIARKL--QTLVDVGLGYIKLGQPA----TTLSGGEAQRVKLAK 835 Query: 160 AIA----NKPLIILADEPTGNLDLKTAQQVFSILKYLVVRSGLAALIATHNHDLASQMD 214 ++ K L IL DEPT L +++ +L L V G ++ HN D+ D Sbjct: 836 ELSKRSTGKTLYIL-DEPTTGLHFDDIKKLLEVLHRL-VDKGNTVIVIEHNLDVIKTAD 892 Score = 32.1 bits (73), Expect = 0.12 Identities = 33/123 (26%), Positives = 53/123 (43%), Gaps = 12/123 (9%) Query: 101 MDFSVIENIIFPQIIAGINHKTAYQRAMDL-LSYMDMSQYANRRSSDISGGEQQRVAICR 159 + S E I I+ I K +D+ L Y+ +S R + +SGGE QR+ + Sbjct: 441 LKLSEKEKKIAEPILKEI--KERLGFLVDVGLGYLTLS----RSAGTLSGGEAQRIRLAT 494 Query: 160 AIANK---PLIILADEPTGNLDLKTAQQVFSILKYLVVRSGLAALIATHNHDLASQMDRQ 216 I + L +L DEP+ L + +++ LK L G ++ H+ D D Sbjct: 495 QIGSGLTGVLYVL-DEPSIGLHQRDNERLIETLKRL-RDLGNTVIVVEHDEDTIRAADHI 552 Query: 217 ITI 219 I I Sbjct: 553 IDI 555 Score = 29.8 bits (67), Expect = 0.59 Identities = 9/27 (33%), Positives = 19/27 (70%) Query: 26 LENVHLSLKKGEIVALVSPSGTGKSTI 52 L+N+ L + + ++V + SG+GKS++ Sbjct: 16 LKNIDLEIPRNKLVVITGLSGSGKSSL 42 Score = 26.3 bits (58), Expect = 7.6 Identities = 9/29 (31%), Positives = 18/29 (62%) Query: 26 LENVHLSLKKGEIVALVSPSGTGKSTILH 54 L+N+ + + G + SG+GKST+++ Sbjct: 617 LKNIDVEIPLGVFTCVTGVSGSGKSTLIN 645 >gnl|CDD|72999 cd03240, ABC_Rad50, The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.. Length = 204 Score = 34.8 bits (80), Expect = 0.020 Identities = 35/193 (18%), Positives = 74/193 (38%), Gaps = 30/193 (15%) Query: 38 IVALVSPSGTGKSTILHIAGLLEVPDQGNVIIANQLCNKL--SDDKKSFLRCSKIGFVYQ 95 + +V +G GK+TI+ + KL + ++ ++ + + Sbjct: 24 LTLIVGQNGAGKTTIIEALKYALTGELPPNSKGGAHDPKLIREGEVRAQVKLAFENANGK 83 Query: 96 EHRLLMDFSVIENIIFPQIIAGINHKTAYQRAMDLLSYMDMSQYANRRSSDISGGEQQ-- 153 ++ + +++EN+IF +Q + +DM SGGE+ Sbjct: 84 KYTITRSLAILENVIF-----------CHQGESNWP-LLDMRGR-------CSGGEKVLA 124 Query: 154 ----RVAICRAI-ANKPLIILADEPTGNLDL-KTAQQVFSILKYLVVRSGLAALIATHNH 207 R+A+ +N ++ L DEPT NLD + + I++ + ++ TH+ Sbjct: 125 SLIIRLALAETFGSNCGILAL-DEPTTNLDEENIEESLAEIIEERKSQKNFQLIVITHDE 183 Query: 208 DLASQMDRQITIR 220 +L D + Sbjct: 184 ELVDAADHIYRVE 196 >gnl|CDD|37584 KOG2373, KOG2373, KOG2373, Predicted mitochondrial DNA helicase twinkle [Replication, recombination and repair]. Length = 514 Score = 34.2 bits (78), Expect = 0.033 Identities = 16/45 (35%), Positives = 22/45 (48%) Query: 9 LQNVKHSYRQVGKPFPVLENVHLSLKKGEIVALVSPSGTGKSTIL 53 L N + K FPVL + GE+ L P+G+GK+T L Sbjct: 246 LLNTERVVGFQWKRFPVLNKYLKGHRPGELTVLTGPTGSGKTTFL 290 >gnl|CDD|146027 pfam03193, DUF258, Protein of unknown function, DUF258. Length = 161 Score = 33.3 bits (77), Expect = 0.058 Identities = 15/45 (33%), Positives = 19/45 (42%), Gaps = 7/45 (15%) Query: 16 YRQVGKPFPVL----ENVHLSLK---KGEIVALVSPSGTGKSTIL 53 Y +G V+ LK KG+ L SG GKST+L Sbjct: 8 YEAIGYEVLVVSAKTGEGIEELKPLLKGKTSVLAGQSGVGKSTLL 52 >gnl|CDD|29991 cd01125, repA, Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.. Length = 239 Score = 31.9 bits (72), Expect = 0.16 Identities = 26/121 (21%), Positives = 45/121 (37%), Gaps = 26/121 (21%) Query: 36 GEIVALVSPSGTGKSTI-----LHIA-------GLLEVPDQGNVIIANQLCNKLSDDKKS 83 G + ALV+P GTGKS++ L +A G L+V + G V+ + D ++ Sbjct: 1 GYVSALVAPGGTGKSSLLLVLALAMALGKNLFGGGLKVTEPGRVVYLS-----AEDPREE 55 Query: 84 FLR-----CSKIGFVYQEHRLLMDFSVIENIIFPQIIAGINHKTAYQRAMDLLSYMDMSQ 138 R + RL +D I+ I IA ++ + + + Sbjct: 56 IHRRLEAILQHLEPDDAGDRLFIDSGRIQPI----SIAREGRIIVVPEFERIIEQLLIRR 111 Query: 139 Y 139 Sbjct: 112 I 112 >gnl|CDD|32462 COG2308, COG2308, Uncharacterized conserved protein [Function unknown]. Length = 488 Score = 31.8 bits (72), Expect = 0.19 Identities = 14/29 (48%), Positives = 18/29 (62%) Query: 53 LHIAGLLEVPDQGNVIIANQLCNKLSDDK 81 L + GL+E GNV IAN L ++DDK Sbjct: 296 LGVPGLVEAYRAGNVTIANALGTGVADDK 324 >gnl|CDD|30543 COG0194, Gmk, Guanylate kinase [Nucleotide transport and metabolism]. Length = 191 Score = 31.6 bits (72), Expect = 0.20 Identities = 10/22 (45%), Positives = 15/22 (68%) Query: 33 LKKGEIVALVSPSGTGKSTILH 54 + KG ++ L PSG GKST++ Sbjct: 1 MSKGLLIVLSGPSGVGKSTLVK 22 >gnl|CDD|57925 cd01854, YjeQ_engC, YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.. Length = 287 Score = 30.1 bits (68), Expect = 0.50 Identities = 10/19 (52%), Positives = 13/19 (68%) Query: 35 KGEIVALVSPSGTGKSTIL 53 KG+ LV SG GKST++ Sbjct: 160 KGKTSVLVGQSGVGKSTLI 178 >gnl|CDD|33398 COG3598, RepA, RecA-family ATPase [DNA replication, recombination, and repair]. Length = 402 Score = 29.2 bits (65), Expect = 0.88 Identities = 16/77 (20%), Positives = 29/77 (37%), Gaps = 17/77 (22%) Query: 33 LKKGEIVALVSPSGTGKSTILHIAGLL----------EVPDQGNVIIANQLCNKLSDDKK 82 +KG + L SG GK+T+L + +V + G V+ + L ++ Sbjct: 86 FRKGYVSILYGDSGVGKTTLLLYLCIALAAGKNLFGNKVKEPGKVLYVS-----LELYRE 140 Query: 83 SFLRCSKIGFVYQEHRL 99 L ++ V L Sbjct: 141 DILE--RLEPVRARMGL 155 >gnl|CDD|31395 COG1202, COG1202, Superfamily II helicase, archaea-specific [General function prediction only]. Length = 830 Score = 29.2 bits (65), Expect = 0.89 Identities = 16/52 (30%), Positives = 26/52 (50%), Gaps = 8/52 (15%) Query: 29 VHLSLKKGEIVALVSPSGTGKSTILHIAGLLEVPDQGN--------VIIANQ 72 V L +GE + +VS + +GK+ I +AG+ + G V +ANQ Sbjct: 225 VEAGLLEGENLLVVSATASGKTLIGELAGIPRLLSGGKKMLFLVPLVALANQ 276 >gnl|CDD|73180 cd00071, GMPK, Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.. Length = 137 Score = 29.3 bits (66), Expect = 0.99 Identities = 13/28 (46%), Positives = 16/28 (57%), Gaps = 2/28 (7%) Query: 38 IVALVSPSGTGKSTILHIAGLLEVPDQG 65 ++ L PSG GKST+L LLE D Sbjct: 1 LIVLSGPSGVGKSTLLKR--LLEEFDPN 26 >gnl|CDD|73044 cd03285, ABC_MSH2_euk, MutS2 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA structures or lesions results in ADP/ATP exchange.. Length = 222 Score = 28.7 bits (64), Expect = 1.3 Identities = 15/66 (22%), Positives = 29/66 (43%) Query: 156 AICRAIANKPLIILADEPTGNLDLKTAQQVFSILKYLVVRSGLAALIATHNHDLASQMDR 215 AI ++ LII+ + G ++I +Y+ + L ATH H+L + D Sbjct: 102 AILKSATENSLIIIDELGRGTSTYDGFGLAWAIAEYIATQIKCFCLFATHFHELTALADE 161 Query: 216 QITIRD 221 +++ Sbjct: 162 VPNVKN 167 >gnl|CDD|34791 COG5192, BMS1, GTP-binding protein required for 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis]. Length = 1077 Score = 28.6 bits (63), Expect = 1.4 Identities = 11/16 (68%), Positives = 14/16 (87%) Query: 38 IVALVSPSGTGKSTIL 53 IVA+V P GTGKST++ Sbjct: 71 IVAVVGPPGTGKSTLI 86 >gnl|CDD|31356 COG1162, COG1162, Predicted GTPases [General function prediction only]. Length = 301 Score = 28.7 bits (64), Expect = 1.4 Identities = 9/19 (47%), Positives = 13/19 (68%) Query: 35 KGEIVALVSPSGTGKSTIL 53 G+I L+ SG GKST++ Sbjct: 163 AGKITVLLGQSGVGKSTLI 181 >gnl|CDD|111407 pfam02504, FA_synthesis, Fatty acid synthesis protein. The plsX gene is part of the bacterial fab gene cluster which encodes several key fatty acid biosynthetic enzymes. The exact function of the plsX protein in fatty acid synthesis is unknown. Length = 322 Score = 28.5 bits (64), Expect = 1.5 Identities = 14/44 (31%), Positives = 22/44 (50%), Gaps = 7/44 (15%) Query: 167 IILADEPTGNLDLKTAQQVFSILKYLV-------VRSGLAALIA 203 +I+ D TGN+ LKTA+ V + ++ S L AL+ Sbjct: 221 VIVCDGFTGNVILKTAEGVAKFIGSILKDELKRSKLSKLGALLL 264 >gnl|CDD|133370 cd04170, EF-G_bact, Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group contains only bacterial members. Length = 268 Score = 28.3 bits (64), Expect = 2.0 Identities = 10/25 (40%), Positives = 16/25 (64%), Gaps = 4/25 (16%) Query: 39 VALVSPSGTGKST----ILHIAGLL 59 +ALV SG+GK+T +L+ G + Sbjct: 2 IALVGHSGSGKTTLAEALLYATGAI 26 >gnl|CDD|143799 pfam00006, ATP-synt_ab, ATP synthase alpha/beta family, nucleotide-binding domain. This family includes the ATP synthase alpha and beta subunits, the ATP synthase associated with flagella and the termination factor Rho. Length = 213 Score = 28.2 bits (64), Expect = 2.1 Identities = 8/20 (40%), Positives = 13/20 (65%) Query: 35 KGEIVALVSPSGTGKSTILH 54 KG+ + + SGTGK+ +L Sbjct: 14 KGQRIGIFGGSGTGKTVLLG 33 >gnl|CDD|30859 COG0513, SrmB, Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]. Length = 513 Score = 27.8 bits (61), Expect = 2.2 Identities = 18/69 (26%), Positives = 33/69 (47%), Gaps = 7/69 (10%) Query: 153 QRVAICRAIANKPLIILADEPTGNLDLKTAQQVFSILKYLVV---RSGLAALIATHNHDL 209 Q AI +A + ++ A TG KTA + +L+ ++ R ++ALI +L Sbjct: 56 QLAAIPLILAGRDVLGQAQTGTG----KTAAFLLPLLQKILKSVERKYVSALILAPTREL 111 Query: 210 ASQMDRQIT 218 A Q+ ++ Sbjct: 112 AVQIAEELR 120 >gnl|CDD|73047 cd03288, ABCC_SUR2, The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.. Length = 257 Score = 28.1 bits (62), Expect = 2.3 Identities = 43/207 (20%), Positives = 87/207 (42%), Gaps = 27/207 (13%) Query: 24 PVLENVHLSLKKGEIVALVSPSGTGKSTI-LHIAGLLEVPDQGNVIIANQLCNKLSDD-- 80 PVL++V +K G+ V + +G+GKS++ L ++++ D G ++I +KL Sbjct: 35 PVLKHVKAYIKPGQKVGICGRTGSGKSSLSLAFFRMVDIFD-GKIVIDGIDISKLPLHTL 93 Query: 81 --------KKSFLRCSKIGFVYQEHRLLMDFSVIENIIFPQIIAGINHKTAYQRAMDLLS 132 + L I F D + E + Q+ N + +D + Sbjct: 94 RSRLSIILQDPILFSGSIRFNLDPECKCTDDRLWEALEIAQL---KNMVKSLPGGLDAV- 149 Query: 133 YMDMSQYANRRSSDISGGEQQRVAICRAIANKPLIILADEPTGNLDLKTAQQVFSILKYL 192 + S G++Q + RA K I++ DE T ++D+ T +IL+ + Sbjct: 150 -------VTEGGENFSVGQRQLFCLARAFVRKSSILIMDEATASIDMATE----NILQKV 198 Query: 193 VVRSGLAALIATHNHDLASQMDRQITI 219 V+ + + T H +++ +D + + Sbjct: 199 VMTAFADRTVVTIAHRVSTILDADLVL 225 >gnl|CDD|146570 pfam04002, DUF2466, Protein of unknown function (DUF2466). This family was named initially with reference to the E. coli radC102 mutation which suggested that RadC was involved in repair of DNA lesions. However the relevant mutation has subsequently been shown to be in recG, where radC is in fact an allele of recG. In addition, a personal communication from Claverys, J-P, et al, indicates a total failure of all attempts to characterize a radiation-related function for RadC in Streptococcus pneumoniae, suggesting that it is not involved in repair of DNA lesions, in recombination during transformation, in gene conversion, nor in mismatch repair. Length = 123 Score = 27.9 bits (63), Expect = 2.4 Identities = 15/37 (40%), Positives = 19/37 (51%), Gaps = 5/37 (13%) Query: 188 ILKYLVVRSGLAALIATHNH---DLA-SQMDRQITIR 220 I K +R AA+I HNH D SQ D ++T R Sbjct: 56 IFKR-ALRLNAAAVILAHNHPSGDPTPSQADIELTKR 91 >gnl|CDD|31609 COG1419, FlhF, Flagellar GTP-binding protein [Cell motility and secretion]. Length = 407 Score = 27.6 bits (61), Expect = 2.9 Identities = 10/23 (43%), Positives = 17/23 (73%) Query: 31 LSLKKGEIVALVSPSGTGKSTIL 53 L +++ ++ALV P+G GK+T L Sbjct: 198 LIVEQKRVIALVGPTGVGKTTTL 220 >gnl|CDD|173686 cd05595, STKc_PKB_beta, Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase B beta. Serine/Threonine Kinases (STKs), Protein Kinase B (PKB) or Akt subfamily, beta (or Akt2) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three PKB isoforms from different genes, PKB-alpha (or Akt1), PKB-beta (or Akt2), and PKB-gamma (or Akt3). PKB contains an N-terminal pleckstrin homology (PH) domain and a C-terminal catalytic domain. PKB-beta is the predominant PKB isoform expressed in insulin-responsive tissues. It plays a critical role in the regulation of glucose homeostasis. It is also implicated in muscle cell differentiation. Mice deficient in PKB-beta display normal growth weights but exhibit severe insulin resistance and diabetes, accompanied by lipoatrophy and B-cell failure. Length = 323 Score = 27.7 bits (61), Expect = 2.9 Identities = 14/50 (28%), Positives = 25/50 (50%), Gaps = 8/50 (16%) Query: 85 LRCSKIGFVYQEHRLLMDFSVIENIIFPQ--------IIAGINHKTAYQR 126 + C ++ F Q+H L + ++E I FP+ ++AG+ K QR Sbjct: 188 MMCGRLPFYNQDHERLFELILMEEIRFPRTLSPEAKSLLAGLLKKDPKQR 237 >gnl|CDD|33504 COG3709, COG3709, Uncharacterized component of phosphonate metabolism [Inorganic ion transport and metabolism]. Length = 192 Score = 27.6 bits (61), Expect = 3.1 Identities = 11/24 (45%), Positives = 15/24 (62%) Query: 33 LKKGEIVALVSPSGTGKSTILHIA 56 G ++A+V PSG GK T+L A Sbjct: 2 TFMGRLIAVVGPSGAGKDTLLDAA 25 >gnl|CDD|173684 cd05593, STKc_PKB_gamma, Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase B gamma. Serine/Threonine Kinases (STKs), Protein Kinase B (PKB) or Akt subfamily, gamma (or Akt3) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three PKB isoforms from different genes, PKB-alpha (or Akt1), PKB-beta (or Akt2), and PKB-gamma (or Akt3). PKB contains an N-terminal pleckstrin homology (PH) domain and a C-terminal catalytic domain. PKB-gamma is predominantly expressed in neuronal tissues. Mice deficient in PKB-gamma show a reduction in brain weight due to the decreases in cell size and cell number. PKB-gamma has also been shown to be upregulated in estrogen-deficient breast cancer cells, androgen-independent prostate cancer cells, and primary ovarian tumors. It acts as a key mediator in the genesis of ovarian cancer. Length = 328 Score = 27.3 bits (60), Expect = 3.8 Identities = 9/32 (28%), Positives = 20/32 (62%) Query: 85 LRCSKIGFVYQEHRLLMDFSVIENIIFPQIIA 116 + C ++ F Q+H L + ++E+I FP+ ++ Sbjct: 188 MMCGRLPFYNQDHEKLFELILMEDIKFPRTLS 219 >gnl|CDD|30598 COG0249, MutS, Mismatch repair ATPase (MutS family) [DNA replication, recombination, and repair]. Length = 843 Score = 27.2 bits (60), Expect = 4.1 Identities = 20/73 (27%), Positives = 34/73 (46%), Gaps = 8/73 (10%) Query: 157 ICRAIANKPLIILADE---PTGNLD-LKTAQQVFSILKYLVVRSGLAALIATHNHDLASQ 212 I + L+IL DE T D L A ++L+YL + G L ATH H+L Sbjct: 680 ILDNATERSLVIL-DEIGRGTSTYDGLAIAW---AVLEYLHEKIGCRTLFATHYHELTEL 735 Query: 213 MDRQITIRDGMIA 225 ++ +++ ++ Sbjct: 736 EEKLPQVKNYHMS 748 >gnl|CDD|35962 KOG0743, KOG0743, KOG0743, AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]. Length = 457 Score = 27.2 bits (60), Expect = 4.1 Identities = 20/72 (27%), Positives = 30/72 (41%), Gaps = 17/72 (23%) Query: 16 YRQVGKPFPVLENVHLSLKKGEIVALVSPSGTGKST-ILHIAGLLEVPDQGNVIIANQLC 74 Y++VGK + K+G + L P GTGKS+ I +A L ++ Sbjct: 227 YKRVGKAW----------KRGYL--LYGPPGTGKSSFIAAMANYLNY----DIYDLELTE 270 Query: 75 NKLSDDKKSFLR 86 KL D + L Sbjct: 271 VKLDSDLRHLLL 282 >gnl|CDD|30001 cd01135, V_A-ATPase_B, V/A-type ATP synthase (non-catalytic) subunit B. These ATPases couple ATP hydrolysis to the build up of a H+ gradient, but V-type ATPases do not catalyze the reverse reaction. The Vacuolar (V-type) ATPase is found in the membranes of vacuoles, the golgi apparatus and in other coated vesicles in eukaryotes. Archaea have a protein which is similar in sequence to V-ATPases, but functions like an F-ATPase (called A-ATPase). A similar protein is also found in a few bacteria. This subfamily consists of the non-catalytic beta subunit.. Length = 276 Score = 27.1 bits (60), Expect = 4.7 Identities = 13/42 (30%), Positives = 21/42 (50%), Gaps = 1/42 (2%) Query: 100 LMDFSVIENIIFPQIIAGINHKTAYQRAMDLLSYM-DMSQYA 140 L + IE II P++ AY++ +L + DM+ YA Sbjct: 138 LANDPTIERIITPRMALTTAEYLAYEKGKHVLVILTDMTNYA 179 >gnl|CDD|133313 cd04113, Rab4, Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 161 Score = 26.8 bits (60), Expect = 5.1 Identities = 8/14 (57%), Positives = 11/14 (78%) Query: 41 LVSPSGTGKSTILH 54 ++ SGTGKS +LH Sbjct: 5 IIGSSGTGKSCLLH 18 >gnl|CDD|99707 cd00009, AAA, The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.. Length = 151 Score = 26.7 bits (59), Expect = 5.3 Identities = 20/78 (25%), Positives = 31/78 (39%), Gaps = 6/78 (7%) Query: 31 LSLKKGEIVALVSPSGTGKSTILH-IAGLLEVPDQGNVII-ANQLCNKLSDDKKSFLRCS 88 L L + + L P GTGK+T+ IA L P + + A+ L L + Sbjct: 14 LELPPPKNLLLYGPPGTGKTTLARAIANELFRPGAPFLYLNASDLLEGLVVAELFGHFLV 73 Query: 89 KIGFVYQEHR----LLMD 102 ++ F E L +D Sbjct: 74 RLLFELAEKAKPGVLFID 91 >gnl|CDD|173685 cd05594, STKc_PKB_alpha, Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase B alpha. Serine/Threonine Kinases (STKs), Protein Kinase B (PKB) or Akt subfamily, alpha (or Akt1) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three PKB isoforms from different genes, PKB-alpha (or Akt1), PKB-beta (or Akt2), and PKB-gamma (or Akt3). PKB contains an N-terminal pleckstrin homology (PH) domain and a C-terminal catalytic domain. PKB-alpha is predominantly expressed in endothelial cells. It is critical for the regulation of angiogenesis and the maintenance of vascular integrity. It also plays a role in adipocyte differentiation. Mice deficient in PKB-alpha exhibit perinatal morbidity, growth retardation, reduction in body weight accompanied by reduced sizes of multiple organs, and enhanced apoptosis in some cell types. PKB-alpha activity has been reported to be frequently elevated in breast and prostate cancers. In some cancer cells, PKB-alpha may act as a suppressor of metastasis. Length = 325 Score = 26.5 bits (58), Expect = 5.5 Identities = 13/50 (26%), Positives = 25/50 (50%), Gaps = 8/50 (16%) Query: 85 LRCSKIGFVYQEHRLLMDFSVIENIIFPQ--------IIAGINHKTAYQR 126 + C ++ F Q+H L + ++E I FP+ +++G+ K QR Sbjct: 189 MMCGRLPFYNQDHEKLFELILMEEIRFPRTLSPEAKSLLSGLLKKDPKQR 238 >gnl|CDD|73000 cd03241, ABC_RecN, RecN ATPase involved in DNA repair; ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.. Length = 276 Score = 26.7 bits (59), Expect = 5.5 Identities = 14/39 (35%), Positives = 21/39 (53%), Gaps = 1/39 (2%) Query: 21 KPFPVLENVHLSLKKGEIVALVSPSGTGKSTILHIAGLL 59 K F ++E + L ++G V L +G GKS +L LL Sbjct: 7 KNFALIEELELDFEEGLTV-LTGETGAGKSILLDALSLL 44 >gnl|CDD|73043 cd03284, ABC_MutS1, MutS1 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA structures or lesions results in ADP/ATP exchange.. Length = 216 Score = 26.7 bits (59), Expect = 5.7 Identities = 23/79 (29%), Positives = 34/79 (43%), Gaps = 15/79 (18%) Query: 144 SSDISGGE-------QQRVAICRAIANKPLIILADE---PTGNLD-LKTAQQVFSILKYL 192 S D++GG + I + L++L DE T D L A +I++YL Sbjct: 83 SDDLAGGRSTFMVEMVETANILNNATERSLVLL-DEIGRGTSTYDGLSIAW---AIVEYL 138 Query: 193 VVRSGLAALIATHNHDLAS 211 + G L ATH H+L Sbjct: 139 HEKIGAKTLFATHYHELTE 157 >gnl|CDD|33731 COG3950, COG3950, Predicted ATP-binding protein involved in virulence [General function prediction only]. Length = 440 Score = 26.5 bits (58), Expect = 5.7 Identities = 9/29 (31%), Positives = 18/29 (62%) Query: 28 NVHLSLKKGEIVALVSPSGTGKSTILHIA 56 N+ ++ + E +V P+G+GK+T+L Sbjct: 16 NLDITFGESETTIIVGPNGSGKTTVLDAI 44 >gnl|CDD|146043 pfam03215, Rad17, Rad17 cell cycle checkpoint protein. Length = 490 Score = 26.5 bits (58), Expect = 5.9 Identities = 13/30 (43%), Positives = 17/30 (56%) Query: 26 LENVHLSLKKGEIVALVSPSGTGKSTILHI 55 L+ V L K I+ L PSG GKST + + Sbjct: 35 LKAVFLESNKQLILLLTGPSGCGKSTTVKV 64 >gnl|CDD|163702 cd08071, MPN_DUF2466, Mov34/MPN/PAD-1 family. Mov34 DUF2466 (also known as DNA repair protein RadC) domain of unknown function contains the signature JAB1/MPN/Mov34 metalloenzyme (JAMM) motif, EXnHS/THX7SXXD, which is involved in zinc ion coordination and provides the active site for isopeptidase activity. However, to date, the name RadC has been misleading and no function has been determined. Length = 113 Score = 26.6 bits (60), Expect = 6.1 Identities = 14/37 (37%), Positives = 19/37 (51%), Gaps = 5/37 (13%) Query: 188 ILKYLVVRSGLAALIATHNH---DLA-SQMDRQITIR 220 I K +R AA+I HNH D S+ D ++T R Sbjct: 51 IFKE-ALRHNAAAIILAHNHPSGDPTPSREDIELTKR 86 >gnl|CDD|30765 COG0416, PlsX, Fatty acid/phospholipid biosynthesis enzyme [Lipid metabolism]. Length = 338 Score = 26.7 bits (59), Expect = 6.3 Identities = 17/56 (30%), Positives = 30/56 (53%), Gaps = 8/56 (14%) Query: 167 IILADEPTGNLDLKT----AQQVFSILKYLV---VRSGLAALIATHNHD-LASQMD 214 +++ D TGN+ LKT A+ + S+LK + ++S L AL+ L ++D Sbjct: 225 VVVTDGFTGNVVLKTAEGTAKFILSLLKEEIKSSLKSKLGALLLKPALKRLKKKLD 280 >gnl|CDD|38732 KOG3523, KOG3523, KOG3523, Putative guanine nucleotide exchange factor TIM [Signal transduction mechanisms]. Length = 695 Score = 26.1 bits (57), Expect = 7.2 Identities = 12/46 (26%), Positives = 24/46 (52%), Gaps = 1/46 (2%) Query: 1 MDSAEVLLLQNVKHSYRQVGKPFPVLENVHLSLKKGEIVALVSPSG 46 M+ E L+ + + +++V K FP++ +K+GE+ LV Sbjct: 445 MERTEELIRISRQLEFKKV-KAFPLVSQSRWLVKRGELTQLVERRA 489 >gnl|CDD|30814 COG0466, Lon, ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]. Length = 782 Score = 26.3 bits (58), Expect = 7.2 Identities = 9/19 (47%), Positives = 13/19 (68%) Query: 34 KKGEIVALVSPSGTGKSTI 52 KG I+ LV P G GK+++ Sbjct: 348 LKGPILCLVGPPGVGKTSL 366 >gnl|CDD|133282 cd01882, BMS1, Bms1. Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes. Length = 225 Score = 26.1 bits (58), Expect = 7.4 Identities = 8/16 (50%), Positives = 13/16 (81%) Query: 38 IVALVSPSGTGKSTIL 53 +VA+V P G GK+T++ Sbjct: 41 VVAVVGPPGVGKTTLI 56 >gnl|CDD|34613 COG5008, PilU, Tfp pilus assembly protein, ATPase PilU [Cell motility and secretion / Intracellular trafficking and secretion]. Length = 375 Score = 26.1 bits (57), Expect = 7.6 Identities = 12/30 (40%), Positives = 20/30 (66%), Gaps = 2/30 (6%) Query: 24 PVLENVHLSLKKGEIVALVSPSGTGKSTIL 53 VL++ L+L K +V +V +G+GKST + Sbjct: 117 EVLKD--LALAKRGLVIIVGATGSGKSTTM 144 >gnl|CDD|35964 KOG0745, KOG0745, KOG0745, Putative ATP-dependent Clp-type protease (AAA+ ATPase superfamily) [Posttranslational modification, protein turnover, chaperones]. Length = 564 Score = 26.1 bits (57), Expect = 7.9 Identities = 14/54 (25%), Positives = 30/54 (55%), Gaps = 3/54 (5%) Query: 10 QNVKHSYRQVGKPFPVLENVHLSLKKGEIVALVSPSGTGKSTILH-IAGLLEVP 62 ++ RQ+ K + + L+K ++ L+ P+G+GK+ + +A +L+VP Sbjct: 202 AQWPNNQRQIAKALDEDDE-DVELEKSNVL-LLGPTGSGKTLLAQTLARVLDVP 253 >gnl|CDD|144199 pfam00519, PPV_E1_C, Papillomavirus helicase. This protein is a DNA helicase that is required for initiation of viral DNA replication. This protein forms a complex with the E2 protein pfam00508. Length = 432 Score = 25.9 bits (58), Expect = 8.3 Identities = 9/32 (28%), Positives = 15/32 (46%), Gaps = 2/32 (6%) Query: 124 YQRAMDLLSYMDMSQYANRRSSDISGGEQQRV 155 Y+RA + M MSQ+ +R + G + Sbjct: 204 YKRAE--MREMSMSQWIKKRCDKVEGEGDWKP 233 >gnl|CDD|31392 COG1199, DinG, Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair]. Length = 654 Score = 25.9 bits (56), Expect = 9.1 Identities = 10/22 (45%), Positives = 16/22 (72%) Query: 29 VHLSLKKGEIVALVSPSGTGKS 50 V +LK GE + + +P+GTGK+ Sbjct: 27 VAEALKGGEGLLIEAPTGTGKT 48 >gnl|CDD|29986 cd01120, RecA-like_NTPases, RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.. Length = 165 Score = 25.8 bits (56), Expect = 9.1 Identities = 8/33 (24%), Positives = 16/33 (48%) Query: 38 IVALVSPSGTGKSTILHIAGLLEVPDQGNVIIA 70 ++ + P+G+GK+T+ L G V+ Sbjct: 1 LILVFGPTGSGKTTLALQLALNIATKGGKVVYV 33 >gnl|CDD|32560 COG2433, COG2433, Uncharacterized conserved protein [Function unknown]. Length = 652 Score = 26.0 bits (57), Expect = 9.3 Identities = 16/82 (19%), Positives = 34/82 (41%), Gaps = 16/82 (19%) Query: 2 DSAEVLLLQNVKHSYRQVGKPFPVLENVHLS----------LKKGEIVALVSPSGTGKST 51 AE+ ++ ++ S + G P V+E + L +K+G+++ + PSG G T Sbjct: 503 KLAELRKMRKLELSGK--GTPVKVVEKLTLEAIEEAEEEYGIKEGDVILVEDPSGGGART 560 Query: 52 ILHIAGLLEVPDQGNVIIANQL 73 + +I ++ Sbjct: 561 AEELIDK----KPRAIIRGEEM 578 >gnl|CDD|32059 COG1875, COG1875, Predicted ATPase related to phosphate starvation-inducible protein PhoH [Signal transduction mechanisms]. Length = 436 Score = 26.0 bits (57), Expect = 9.7 Identities = 10/28 (35%), Positives = 18/28 (64%) Query: 38 IVALVSPSGTGKSTILHIAGLLEVPDQG 65 +V+L +GTGK+ + AGL +V ++ Sbjct: 247 LVSLGGKAGTGKTLLALAAGLEQVLERK 274 Database: CddA Posted date: Feb 4, 2011 9:38 PM Number of letters in database: 6,263,737 Number of sequences in database: 21,609 Lambda K H 0.321 0.136 0.380 Gapped Lambda K H 0.267 0.0825 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 21609 Number of Hits to DB: 2,577,240 Number of extensions: 131145 Number of successful extensions: 914 Number of sequences better than 10.0: 1 Number of HSP's gapped: 747 Number of HSP's successfully gapped: 259 Length of query: 227 Length of database: 6,263,737 Length adjustment: 90 Effective length of query: 137 Effective length of database: 4,318,927 Effective search space: 591692999 Effective search space used: 591692999 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 56 (25.2 bits)