RPS-BLAST 2.2.22 [Sep-27-2009]

Database: CddA 
           21,609 sequences; 6,263,737 total letters

Searching..................................................done

Query= gi|254780871|ref|YP_003065284.1| lipoprotein-releasing system
ATP-binding protein lolD [Candidatus Liberibacter asiaticus str.
psy62]
         (227 letters)



>gnl|CDD|73014 cd03255, ABC_MJ0796_Lo1CDE_FtsE, This family is comprised of MJ0796
           ATP-binding cassette, macrolide-specific ABC-type efflux
           carrier (MacAB), and proteins involved in cell division
           (FtsE), and release of liporoteins from the cytoplasmic
           membrane (LolCDE).  They are clustered together
           phylogenetically.  MacAB is an exporter that confers
           resistance to macrolides, while the LolCDE system is not
           a transporter at all.  An FtsE null mutants showed
           filamentous growth and appeared viable on high salt
           medium only, indicating a role for FtsE in cell division
           and/or salt transport.  The LolCDE complex catalyses the
           release of lipoproteins from the cytoplasmic membrane
           prior to their targeting to the outer membrane..
          Length = 218

 Score =  240 bits (615), Expect = 2e-64
 Identities = 94/218 (43%), Positives = 138/218 (63%)

Query: 7   LLLQNVKHSYRQVGKPFPVLENVHLSLKKGEIVALVSPSGTGKSTILHIAGLLEVPDQGN 66
           + L+N+  +Y   G+    L+ V LS++KGE VA+V PSG+GKST+L+I G L+ P  G 
Sbjct: 1   IELKNLSKTYGGGGEKVQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRPTSGE 60

Query: 67  VIIANQLCNKLSDDKKSFLRCSKIGFVYQEHRLLMDFSVIENIIFPQIIAGINHKTAYQR 126
           V +     +KLS+ + +  R   IGFV+Q   LL D + +EN+  P ++AG+  K   +R
Sbjct: 61  VRVDGTDISKLSEKELAAFRRRHIGFVFQSFNLLPDLTALENVELPLLLAGVPKKERRER 120

Query: 127 AMDLLSYMDMSQYANRRSSDISGGEQQRVAICRAIANKPLIILADEPTGNLDLKTAQQVF 186
           A +LL  + +    N   S++SGG+QQRVAI RA+AN P IILADEPTGNLD +T ++V 
Sbjct: 121 AEELLERVGLGDRLNHYPSELSGGQQQRVAIARALANDPKIILADEPTGNLDSETGKEVM 180

Query: 187 SILKYLVVRSGLAALIATHNHDLASQMDRQITIRDGMI 224
            +L+ L   +G   ++ TH+ +LA   DR I +RDG I
Sbjct: 181 ELLRELNKEAGTTIVVVTHDPELAEYADRIIELRDGKI 218


>gnl|CDD|31331 COG1136, SalX, ABC-type antimicrobial peptide transport system,
           ATPase component [Defense mechanisms].
          Length = 226

 Score =  229 bits (586), Expect = 5e-61
 Identities = 94/222 (42%), Positives = 142/222 (63%), Gaps = 1/222 (0%)

Query: 6   VLLLQNVKHSYRQVGKPFPVLENVHLSLKKGEIVALVSPSGTGKSTILHIAGLLEVPDQG 65
           ++ L+NV   Y   G+    L++V+L ++ GE VA+V PSG+GKST+L++ G L+ P  G
Sbjct: 1   MIELKNVSKIYGLGGEKVEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDKPTSG 60

Query: 66  NVIIANQLCNKLSDDKKSFLRCSKIGFVYQEHRLLMDFSVIENIIFPQIIAGINHKTAYQ 125
            V+I  +   KLS+ + + LR  KIGFV+Q   LL D +V+EN+  P +IAG +     +
Sbjct: 61  EVLINGKDLTKLSEKELAKLRRKKIGFVFQNFNLLPDLTVLENVELPLLIAGKSAGRRKR 120

Query: 126 RAMDLLSYMDMS-QYANRRSSDISGGEQQRVAICRAIANKPLIILADEPTGNLDLKTAQQ 184
            A +LL  + +  +   ++ S++SGG+QQRVAI RA+ N P IILADEPTGNLD KTA++
Sbjct: 121 AAEELLEVLGLEDRLLKKKPSELSGGQQQRVAIARALINNPKIILADEPTGNLDSKTAKE 180

Query: 185 VFSILKYLVVRSGLAALIATHNHDLASQMDRQITIRDGMIAD 226
           V  +L+ L    G   ++ TH+ +LA   DR I ++DG I +
Sbjct: 181 VLELLRELNKERGKTIIMVTHDPELAKYADRVIELKDGKIEE 222


>gnl|CDD|32710 COG2884, FtsE, Predicted ATPase involved in cell division [Cell
           division and chromosome partitioning].
          Length = 223

 Score =  183 bits (466), Expect = 3e-47
 Identities = 78/216 (36%), Positives = 121/216 (56%), Gaps = 7/216 (3%)

Query: 16  YRQVGKPFP----VLENVHLSLKKGEIVALVSPSGTGKSTILHIAGLLEVPDQGNVIIAN 71
           +  V K +P     L +V   + KGE V L  PSG GKST+L +    E P +G +++  
Sbjct: 4   FENVSKAYPGGREALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERPTRGKILVNG 63

Query: 72  QLCNKLSDDKKSFLRCSKIGFVYQEHRLLMDFSVIENIIFPQIIAGINHKTAYQRAMDLL 131
              ++L   +  FLR  +IG V+Q+ RLL D +V EN+  P  + G   +   +R  ++L
Sbjct: 64  HDLSRLKGREIPFLR-RQIGVVFQDFRLLPDRTVYENVALPLRVIGKPPREIRRRVSEVL 122

Query: 132 SYMDMSQYANRRSSDISGGEQQRVAICRAIANKPLIILADEPTGNLDLKTAQQVFSILKY 191
             + +   A    S +SGGEQQRVAI RAI N+P ++LADEPTGNLD   + ++  + + 
Sbjct: 123 DLVGLKHKARALPSQLSGGEQQRVAIARAIVNQPAVLLADEPTGNLDPDLSWEIMRLFEE 182

Query: 192 LVVRSGLAALIATHNHDLASQMD-RQITIRDGMIAD 226
           +  R G   L+ATH+ +L ++M  R + + DG +  
Sbjct: 183 I-NRLGTTVLMATHDLELVNRMRHRVLALEDGRLVR 217


>gnl|CDD|33919 COG4181, COG4181, Predicted ABC-type transport system involved in
           lysophospholipase L1 biosynthesis, ATPase component
           [Secondary metabolites biosynthesis, transport, and
           catabolism].
          Length = 228

 Score =  175 bits (446), Expect = 6e-45
 Identities = 76/224 (33%), Positives = 127/224 (56%)

Query: 1   MDSAEVLLLQNVKHSYRQVGKPFPVLENVHLSLKKGEIVALVSPSGTGKSTILHIAGLLE 60
           M +  ++ + ++  +  Q      +L+ V L +K+GE VA+V PSG+GKST+L +   L+
Sbjct: 1   MPAENIIEVHHLSKTVGQGEGELSILKGVELVVKRGETVAIVGPSGSGKSTLLAVLAGLD 60

Query: 61  VPDQGNVIIANQLCNKLSDDKKSFLRCSKIGFVYQEHRLLMDFSVIENIIFPQIIAGINH 120
            P  G V +  Q  +KL +D ++ LR   +GFV+Q   L+ + + +EN+  P  + G + 
Sbjct: 61  DPSSGEVRLLGQPLHKLDEDARAALRARHVGFVFQSFHLIPNLTALENVALPLELRGESS 120

Query: 121 KTAYQRAMDLLSYMDMSQYANRRSSDISGGEQQRVAICRAIANKPLIILADEPTGNLDLK 180
             +   A  LL  + + +      + +SGGEQQRVA+ RA A +P ++ ADEPTGNLD  
Sbjct: 121 ADSRAGAKALLEAVGLGKRLTHYPAQLSGGEQQRVALARAFAGRPDVLFADEPTGNLDRA 180

Query: 181 TAQQVFSILKYLVVRSGLAALIATHNHDLASQMDRQITIRDGMI 224
           T  ++  +L  L    G   ++ TH+  LA++ DRQ+ +R G +
Sbjct: 181 TGDKIADLLFALNRERGTTLVLVTHDPQLAARCDRQLRLRSGRL 224


>gnl|CDD|73015 cd03256, ABC_PhnC_transporter, ABC-type phosphate/phosphonate
           transport system.  Phosphonates are a class of
           organophosphorus compounds characterized by a chemically
           stable carbon-to-phosphorus (C-P) bond.  Phosphonates
           are widespread among naturally occurring compounds in
           all kingdoms of wildlife, but only procaryotic
           microorganisms are able to cleave this bond.  Certain
           bacteria such as E. coli can use alkylphosphonates as a
           phosphorus source.  ABC transporters are a subset of
           nucleotide hydrolases that contain a signature motif,
           Q-loop, and H-loop/switch region, in addition to, the
           Walker A motif/P-loop and Walker B motif commonly found
           in a number of ATP- and GTP-binding and hydrolyzing
           proteins..
          Length = 241

 Score =  161 bits (410), Expect = 1e-40
 Identities = 81/229 (35%), Positives = 130/229 (56%), Gaps = 15/229 (6%)

Query: 7   LLLQNVKHSYRQVGKPFPVLENVHLSLKKGEIVALVSPSGTGKSTIL-HIAGLLEVPDQG 65
           + ++N+  +Y         L++V LS+  GE VAL+ PSG GKST+L  + GL+E P  G
Sbjct: 1   IEVENLSKTY---PNGKKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVE-PTSG 56

Query: 66  NVIIANQLCNKLSDDKKSFLRCSKIGFVYQEHRLLMDFSVIENIIFP--------QIIAG 117
           +V+I     NKL       LR  +IG ++Q+  L+   SV+EN++          + + G
Sbjct: 57  SVLIDGTDINKLKGKALRQLR-RQIGMIFQQFNLIERLSVLENVLSGRLGRRSTWRSLFG 115

Query: 118 INHKTAYQRAMDLLSYMDMSQYANRRSSDISGGEQQRVAICRAIANKPLIILADEPTGNL 177
           +  K   QRA+  L  + +   A +R+  +SGG+QQRVAI RA+  +P +ILADEP  +L
Sbjct: 116 LFPKEEKQRALAALERVGLLDKAYQRADQLSGGQQQRVAIARALMQQPKLILADEPVASL 175

Query: 178 DLKTAQQVFSILKYLVVRSGLAALIATHNHDLASQ-MDRQITIRDGMIA 225
           D  +++QV  +LK +    G+  +++ H  DLA +  DR + ++DG I 
Sbjct: 176 DPASSRQVMDLLKRINREEGITVIVSLHQVDLAREYADRIVGLKDGRIV 224


>gnl|CDD|73051 cd03292, ABC_FtsE_transporter, FtsE is a hydrophilic
           nucleotide-binding protein that binds FtsX to form a
           heterodimeric ATP-binding cassette (ABC)-type
           transporter that associates with the bacterial inner
           membrane.  The FtsE/X transporter is thought to be
           involved in cell division and is important for assembly
           or stability of the septal ring..
          Length = 214

 Score =  161 bits (408), Expect = 2e-40
 Identities = 78/214 (36%), Positives = 119/214 (55%), Gaps = 7/214 (3%)

Query: 16  YRQVGKPFP----VLENVHLSLKKGEIVALVSPSGTGKSTILHIAGLLEVPDQGNVIIAN 71
           +  V K +P     L+ +++S+  GE V LV PSG GKST+L +    E+P  G + +  
Sbjct: 3   FINVTKTYPNGTAALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELPTSGTIRVNG 62

Query: 72  QLCNKLSDDKKSFLRCSKIGFVYQEHRLLMDFSVIENIIFPQIIAGINHKTAYQRAMDLL 131
           Q  + L      +LR  KIG V+Q+ RLL D +V EN+ F   + G+  +   +R    L
Sbjct: 63  QDVSDLRGRAIPYLR-RKIGVVFQDFRLLPDRNVYENVAFALEVTGVPPREIRKRVPAAL 121

Query: 132 SYMDMSQYANRRSSDISGGEQQRVAICRAIANKPLIILADEPTGNLDLKTAQQVFSILKY 191
             + +S       +++SGGEQQRVAI RAI N P I++ADEPTGNLD  T  ++ ++LK 
Sbjct: 122 ELVGLSHKHRALPAELSGGEQQRVAIARAIVNSPTILIADEPTGNLDPDTTWEIMNLLKK 181

Query: 192 LVVRSGLAALIATHNHDLASQMD-RQITIRDGMI 224
            + ++G   ++ATH  +L      R I +  G +
Sbjct: 182 -INKAGTTVVVATHAKELVDTTRHRVIALERGKL 214


>gnl|CDD|73052 cd03293, ABC_NrtD_SsuB_transporters, NrtD and SsuB are the
           ATP-binding subunits of the bacterial ABC-type nitrate
           and sulfonate transport systems, respectively.  ABC
           transporters are a large family of proteins involved in
           the transport of a wide variety of different compounds,
           like sugars, ions, peptides, and more complex organic
           molecules.  The nucleotide binding domain shows the
           highest similarity between all members of the family.
           ABC transporters are a subset of nucleotide hydrolases
           that contain a signature motif, Q-loop, and
           H-loop/switch region, in addition to, the Walker A
           motif/P-loop and Walker B motif commonly found in a
           number of ATP- and GTP-binding and hydrolyzing
           proteins..
          Length = 220

 Score =  158 bits (402), Expect = 1e-39
 Identities = 73/210 (34%), Positives = 112/210 (53%), Gaps = 10/210 (4%)

Query: 7   LLLQNVKHSYRQVGKPFPVLENVHLSLKKGEIVALVSPSGTGKSTILHIAGLLEVPDQGN 66
           L ++NV  +Y   G     LE++ LS+++GE VALV PSG GKST+L I   LE P  G 
Sbjct: 1   LEVRNVSKTYGGGGGAVTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPTSGE 60

Query: 67  VIIANQLCNKLSDDKKSFLRCSKIGFVYQEHRLLMDFSVIENIIFPQIIAGINHKTAYQR 126
           V++  +       D          G+V+Q+  LL   +V++N+     + G+    A +R
Sbjct: 61  VLVDGEPVTGPGPD---------RGYVFQQDALLPWLTVLDNVALGLELQGVPKAEARER 111

Query: 127 AMDLLSYMDMSQYANRRSSDISGGEQQRVAICRAIANKPLIILADEPTGNLDLKTAQQVF 186
           A +LL  + +S + N     +SGG +QRVA+ RA+A  P ++L DEP   LD  T +Q+ 
Sbjct: 112 AEELLELVGLSGFENAYPHQLSGGMRQRVALARALAVDPDVLLLDEPFSALDALTREQLQ 171

Query: 187 SILKYLVVRSGLAALIATHNHDLASQM-DR 215
             L  +   +G   L+ TH+ D A  + DR
Sbjct: 172 EELLDIWRETGKTVLLVTHDIDEAVFLADR 201


>gnl|CDD|31323 COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase
           component [Amino acid transport and metabolism].
          Length = 240

 Score =  155 bits (393), Expect = 1e-38
 Identities = 71/220 (32%), Positives = 122/220 (55%), Gaps = 10/220 (4%)

Query: 9   LQNVKHSYRQVGKPFPVLENVHLSLKKGEIVALVSPSGTGKSTILHIAGLLEVPDQGNVI 68
           ++N+  S+        VL+ + LS++KGE+V ++ PSG+GKST+L     LE PD G++ 
Sbjct: 5   IKNLSKSFGD----KEVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEEPDSGSIT 60

Query: 69  IANQLCNKLSDDKKSFLRCSKIGFVYQEHRLLMDFSVIENIIFPQIIA-GINHKTAYQRA 127
           +  +    + D K       K+G V+Q+  L    +V+EN+    +    ++   A ++A
Sbjct: 61  VDGE---DVGDKKDILKLRRKVGMVFQQFNLFPHLTVLENVTLAPVKVKKLSKAEAREKA 117

Query: 128 MDLLSYMDMSQYANRRSSDISGGEQQRVAICRAIANKPLIILADEPTGNLDLKTAQQVFS 187
           ++LL  + ++  A+   + +SGG+QQRVAI RA+A  P ++L DEPT  LD +   +V  
Sbjct: 118 LELLEKVGLADKADAYPAQLSGGQQQRVAIARALAMDPKVMLFDEPTSALDPELVGEVLD 177

Query: 188 ILKYLVVRSGLAALIATHNHDLASQM-DRQITIRDGMIAD 226
           ++K L    G+  +I TH    A ++ DR I +  G I +
Sbjct: 178 VMKDL-AEEGMTMIIVTHEMGFAREVADRVIFMDQGKIIE 216


>gnl|CDD|33436 COG3638, COG3638, ABC-type phosphate/phosphonate transport system,
           ATPase component [Inorganic ion transport and
           metabolism].
          Length = 258

 Score =  154 bits (391), Expect = 2e-38
 Identities = 75/225 (33%), Positives = 127/225 (56%), Gaps = 18/225 (8%)

Query: 15  SYRQVGKPFP----VLENVHLSLKKGEIVALVSPSGTGKSTIL-HIAGLLEVPDQGNVII 69
             + + K +P     L++V+L + +GE+VA++ PSG GKST+L  + GL++ P  G ++ 
Sbjct: 5   EVKNLSKTYPGGHQALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVD-PTSGEILF 63

Query: 70  AN-QLCNKLSDDKKSFLRCSKIGFVYQEHRLLMDFSVIENIIFP--------QIIAGINH 120
              Q+      + +   R   IG ++Q+  L+   SV+EN++          + + G+  
Sbjct: 64  NGVQITKLKGKELRKLRR--DIGMIFQQFNLVPRLSVLENVLLGRLGYTSTWRSLFGLFS 121

Query: 121 KTAYQRAMDLLSYMDMSQYANRRSSDISGGEQQRVAICRAIANKPLIILADEPTGNLDLK 180
           K    +A+D L  + +   A +R+S +SGG+QQRVAI RA+  +P IILADEP  +LD +
Sbjct: 122 KEDKAQALDALERVGILDKAYQRASTLSGGQQQRVAIARALVQQPKIILADEPVASLDPE 181

Query: 181 TAQQVFSILKYLVVRSGLAALIATHNHDLASQM-DRQITIRDGMI 224
           +A++V  ILK +    G+  ++  H  DLA +  DR I ++ G I
Sbjct: 182 SAKKVMDILKDINQEDGITVIVNLHQVDLAKKYADRIIGLKAGRI 226


>gnl|CDD|73017 cd03258, ABC_MetN_methionine_transporter, MetN (also known as YusC)
           is an ABC-type transporter encoded by metN of the metNPQ
           operon in Bacillus subtilis that is involved in
           methionine transport.  Other members of this system
           include the MetP permease and  the MetQ substrate
           binding protein.  ABC transporters are a subset of
           nucleotide hydrolases that contain a signature motif,
           Q-loop, and H-loop/switch region, in addition to, the
           Walker A motif/P-loop and Walker B motif commonly found
           in a number of ATP- and GTP-binding and hydrolyzing
           proteins..
          Length = 233

 Score =  152 bits (386), Expect = 6e-38
 Identities = 70/220 (31%), Positives = 117/220 (53%), Gaps = 2/220 (0%)

Query: 9   LQNVKHSYRQVGKPFPVLENVHLSLKKGEIVALVSPSGTGKSTILHIAGLLEVPDQGNVI 68
           L+NV   +   G     L++V LS+ KGEI  ++  SG GKST++     LE P  G+V+
Sbjct: 4   LKNVSKVFGDTGGKVTALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERPTSGSVL 63

Query: 69  IANQLCNKLSDDKKSFLRCSKIGFVYQEHRLLMDFSVIENIIFPQIIAGINHKTAYQRAM 128
           +       LS  +    R  +IG ++Q   LL   +V EN+  P  IAG+      +R +
Sbjct: 64  VDGTDLTLLSGKELRKAR-RRIGMIFQHFNLLSSRTVFENVALPLEIAGVPKAEIEERVL 122

Query: 129 DLLSYMDMSQYANRRSSDISGGEQQRVAICRAIANKPLIILADEPTGNLDLKTAQQVFSI 188
           +LL  + +   A+   + +SGG++QRV I RA+AN P ++L DE T  LD +T Q + ++
Sbjct: 123 ELLELVGLEDKADAYPAQLSGGQKQRVGIARALANNPKVLLCDEATSALDPETTQSILAL 182

Query: 189 LKYLVVRSGLAALIATHNHDLASQM-DRQITIRDGMIADL 227
           L+ +    GL  ++ TH  ++  ++ DR   +  G + + 
Sbjct: 183 LRDINRELGLTIVLITHEMEVVKRICDRVAVMEKGEVVEE 222


>gnl|CDD|31330 COG1135, AbcC, ABC-type metal ion transport system, ATPase
           component [Inorganic ion transport and metabolism].
          Length = 339

 Score =  152 bits (385), Expect = 9e-38
 Identities = 81/218 (37%), Positives = 123/218 (56%), Gaps = 3/218 (1%)

Query: 9   LQNVKHSYRQVG-KPFPVLENVHLSLKKGEIVALVSPSGTGKSTILHIAGLLEVPDQGNV 67
           L+NV  ++ Q G      L++V L + KGEI  ++  SG GKST+L +  LLE P  G+V
Sbjct: 4   LENVSKTFGQTGTGTVTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLERPTSGSV 63

Query: 68  IIANQLCNKLSDDKKSFLRCSKIGFVYQEHRLLMDFSVIENIIFPQIIAGINHKTAYQRA 127
            +  Q    LS+ +   LR  KIG ++Q   LL   +V EN+ FP  +AG+      QR 
Sbjct: 64  FVDGQDLTALSEAELRQLR-QKIGMIFQHFNLLSSRTVFENVAFPLELAGVPKAEIKQRV 122

Query: 128 MDLLSYMDMSQYANRRSSDISGGEQQRVAICRAIANKPLIILADEPTGNLDLKTAQQVFS 187
            +LL  + +S  A+R  + +SGG++QRVAI RA+AN P I+L DE T  LD +T Q +  
Sbjct: 123 AELLELVGLSDKADRYPAQLSGGQKQRVAIARALANNPKILLCDEATSALDPETTQSILE 182

Query: 188 ILKYLVVRSGLAALIATHNHDLASQM-DRQITIRDGMI 224
           +LK +    GL  ++ TH  ++  ++ DR   +  G +
Sbjct: 183 LLKDINRELGLTIVLITHEMEVVKRICDRVAVLDQGRL 220


>gnl|CDD|73021 cd03262, ABC_HisP_GlnQ_permeases, HisP and GlnQ are the ATP-binding
           components of the bacterial periplasmic histidine and
           glutamine permeases, repectively.  Histidine permease is
           a multisubunit complex containing the HisQ and HisM
           integral membrane subunits and two copies of HisP.  HisP
           has properties intermediate between those of integral
           and peripheral membrane proteins and is accessible from
           both sides of the membrane, presumably by its
           interaction with HisQ and HisM.  The two HisP subunits
           form a homodimer within the complex.  The domain
           structure of the amino acid uptake systems is typical
           for prokaryote extracellular solute binding
           protein-dependent uptake systems.  All of the amino acid
           uptake systems also have at least one, and in a few
           cases, two extracellular solute binding proteins located
           in the periplasm of Gram-negative bacteria, or attached
           to the cell membrane of Gram-positive bacteria.  The
           best-studied member of the PAAT (polar amino acid
           transport) family is the HisJQMP system of S.
           typhimurium, where HisJ is the extracellular solute
           binding proteins and HisP is the ABC protein..
          Length = 213

 Score =  151 bits (384), Expect = 1e-37
 Identities = 83/219 (37%), Positives = 129/219 (58%), Gaps = 11/219 (5%)

Query: 9   LQNVKHSYRQVGKPFPVLENVHLSLKKGEIVALVSPSGTGKSTILHIAGLLEVPDQGNVI 68
           ++N+  S+      F VL+ + L++KKGE+V ++ PSG+GKST+L    LLE PD G +I
Sbjct: 3   IKNLHKSF----GDFHVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEEPDSGTII 58

Query: 69  IANQLCNKLSDDKKSFLRC-SKIGFVYQEHRLLMDFSVIENIIFPQIIA-GINHKTAYQR 126
           I      KL+DDKK+      K+G V+Q+  L    +V+ENI    I   G++   A +R
Sbjct: 59  IDGL---KLTDDKKNINELRQKVGMVFQQFNLFPHLTVLENITLAPIKVKGMSKAEAEER 115

Query: 127 AMDLLSYMDMSQYANRRSSDISGGEQQRVAICRAIANKPLIILADEPTGNLDLKTAQQVF 186
           A++LL  + ++  A+   + +SGG+QQRVAI RA+A  P ++L DEPT  LD +   +V 
Sbjct: 116 ALELLEKVGLADKADAYPAQLSGGQQQRVAIARALAMNPKVMLFDEPTSALDPELVGEVL 175

Query: 187 SILKYLVVRSGLAALIATHNHDLASQM-DRQITIRDGMI 224
            ++K L    G+  ++ TH    A ++ DR I + DG I
Sbjct: 176 DVMKDL-AEEGMTMVVVTHEMGFAREVADRVIFMDDGRI 213


>gnl|CDD|33633 COG3842, PotA, ABC-type spermidine/putrescine transport systems,
           ATPase components [Amino acid transport and metabolism].
          Length = 352

 Score =  151 bits (382), Expect = 2e-37
 Identities = 68/223 (30%), Positives = 114/223 (51%), Gaps = 12/223 (5%)

Query: 6   VLLLQNVKHSYRQVGKPFPVLENVHLSLKKGEIVALVSPSGTGKSTILHIAGLLEVPDQG 65
            L ++NV  S+      F  ++++ L +KKGE V L+ PSG GK+T+L +    E P  G
Sbjct: 5   ALEIRNVSKSFGD----FTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPSSG 60

Query: 66  NVIIANQLCNKLSDDKKSFLRCSKIGFVYQEHRLLMDFSVIENIIFP-QIIAGINHKTAY 124
            +++  +    +  +K+       IG V+Q + L    +V EN+ F  ++   +      
Sbjct: 61  EILLDGEDITDVPPEKR------PIGMVFQSYALFPHMTVEENVAFGLKVRKKLKKAEIK 114

Query: 125 QRAMDLLSYMDMSQYANRRSSDISGGEQQRVAICRAIANKPLIILADEPTGNLDLKTAQQ 184
            R  + L  + +  +A+R+   +SGG+QQRVA+ RA+  +P ++L DEP   LD K  +Q
Sbjct: 115 ARVEEALELVGLEGFADRKPHQLSGGQQQRVALARALVPEPKVLLLDEPLSALDAKLREQ 174

Query: 185 VFSILKYLVVRSGLAALIATHNHDLASQM-DRQITIRDGMIAD 226
           +   LK L    G+  +  TH+ + A  M DR   + DG I  
Sbjct: 175 MRKELKELQRELGITFVYVTHDQEEALAMSDRIAVMNDGRIEQ 217


>gnl|CDD|73018 cd03259, ABC_Carb_Solutes_like, ABC Carbohydrate and Solute
           Transporters-like subgroup.  This family is comprised of
           proteins involved in the transport of apparently
           unrelated solutes and proteins specific for di- and
           oligosaccharides and polyols.  ABC transporters are a
           large family of proteins involved in the transport of a
           wide variety of different compounds, like sugars, ions,
           peptides and more complex organic molecules.  The
           nucleotide-binding domain shows the highest similarity
           between all members of the family.   ABC transporters
           are a subset of nucleotide hydrolases that contain a
           signature motif, Q-loop, and H-loop/switch region, in
           addition to, the Walker A motif/P-loop and Walker B
           motif commonly found in a number of ATP- and GTP-binding
           and hydrolyzing proteins..
          Length = 213

 Score =  151 bits (382), Expect = 2e-37
 Identities = 72/221 (32%), Positives = 119/221 (53%), Gaps = 13/221 (5%)

Query: 7   LLLQNVKHSYRQVGKPFPVLENVHLSLKKGEIVALVSPSGTGKSTILH-IAGLLEVPDQG 65
           L L+ +  +Y  V      L+++ L+++ GE +AL+ PSG GK+T+L  IAGL E PD G
Sbjct: 1   LELKGLSKTYGSV----RALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGL-ERPDSG 55

Query: 66  NVIIANQLCNKLSDDKKSFLRCSKIGFVYQEHRLLMDFSVIENIIFPQIIAGINHKTAYQ 125
            ++I  +    +  +++       IG V+Q++ L    +V ENI F   + G+       
Sbjct: 56  EILIDGRDVTGVPPERR------NIGMVFQDYALFPHLTVAENIAFGLKLRGVPKAEIRA 109

Query: 126 RAMDLLSYMDMSQYANRRSSDISGGEQQRVAICRAIANKPLIILADEPTGNLDLKTAQQV 185
           R  +LL  + +    NR   ++SGG+QQRVA+ RA+A +P ++L DEP   LD K  +++
Sbjct: 110 RVRELLELVGLEGLLNRYPHELSGGQQQRVALARALAREPSLLLLDEPLSALDAKLREEL 169

Query: 186 FSILKYLVVRSGLAALIATHNHDLASQM-DRQITIRDGMIA 225
              LK L    G+  +  TH+ + A  + DR   + +G I 
Sbjct: 170 REELKELQRELGITTIYVTHDQEEALALADRIAVMNEGRIV 210


>gnl|CDD|31313 COG1116, TauB, ABC-type nitrate/sulfonate/bicarbonate transport
           system, ATPase component [Inorganic ion transport and
           metabolism].
          Length = 248

 Score =  149 bits (378), Expect = 6e-37
 Identities = 70/216 (32%), Positives = 118/216 (54%), Gaps = 13/216 (6%)

Query: 4   AEVLLLQNVKHSYRQVGKPFPVLENVHLSLKKGEIVALVSPSGTGKSTILHIAGLLEVPD 63
             +L ++ V  S+  V     VLE+++LS++KGE VA++ PSG GKST+L +   LE P 
Sbjct: 1   MALLEIEGVSKSFGGV----EVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKPT 56

Query: 64  QGNVIIANQLCNKLSDDKKSFLRCSKIGFVYQEHRLLMDFSVIENIIFPQIIAGINHKTA 123
            G V++  +       D         IG+V+QE  LL   +V++N+     + G +   A
Sbjct: 57  SGEVLLDGRPVTGPGPD---------IGYVFQEDALLPWLTVLDNVALGLELRGKSKAEA 107

Query: 124 YQRAMDLLSYMDMSQYANRRSSDISGGEQQRVAICRAIANKPLIILADEPTGNLDLKTAQ 183
            +RA +LL  + ++ + ++    +SGG +QRVAI RA+A +P ++L DEP G LD  T +
Sbjct: 108 RERAKELLELVGLAGFEDKYPHQLSGGMRQRVAIARALATRPKLLLLDEPFGALDALTRE 167

Query: 184 QVFSILKYLVVRSGLAALIATHNHDLASQMDRQITI 219
           ++   L  L   +    L+ TH+ D A  +  ++ +
Sbjct: 168 ELQDELLRLWEETRKTVLLVTHDVDEAVYLADRVVV 203


>gnl|CDD|72984 cd03225, ABC_cobalt_CbiO_domain1, Domain I of the ABC component of
           a cobalt transport family found in bacteria, archaea,
           and eukaryota.  The transition metal cobalt is an
           essential component of many enzymes and must be
           transported into cells in appropriate amounts when
           needed.  This ABC transport system of the CbiMNQO family
           is involved in cobalt transport in association with the
           cobalamin (vitamin B12) biosynthetic pathways.  Most of
           cobalt (Cbi) transport systems possess a separate CbiN
           component, the cobalt-binding periplasmic protein, and
           they are encoded by the conserved gene cluster cbiMNQO. 
           Both the CbiM and CbiQ proteins are integral cytoplasmic
           membrane proteins, and the CbiO protein has the linker
           peptide and the Walker A and B motifs commonly found in
           the ATPase components of the ABC-type transport
           systems..
          Length = 211

 Score =  146 bits (370), Expect = 6e-36
 Identities = 71/218 (32%), Positives = 113/218 (51%), Gaps = 13/218 (5%)

Query: 9   LQNVKHSYRQVGKPFPVLENVHLSLKKGEIVALVSPSGTGKSTIL-HIAGLLEVPDQGNV 67
           L+N+  SY    +P   L+++ L++KKGE V +V P+G+GKST+L  + GLL  P  G V
Sbjct: 2   LKNLSFSYPDGARP--ALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLG-PTSGEV 58

Query: 68  IIANQLCNKLSDDKKSFLRCSKIGFVYQ--EHRLLMDFSVIENIIFPQIIAGINHKTAYQ 125
           ++  +   KLS  +       K+G V+Q  + +     +V E + F     G+  +   +
Sbjct: 59  LVDGKDLTKLSLKELR----RKVGLVFQNPDDQFFGP-TVEEEVAFGLENLGLPEEEIEE 113

Query: 126 RAMDLLSYMDMSQYANRRSSDISGGEQQRVAICRAIANKPLIILADEPTGNLDLKTAQQV 185
           R  + L  + +    +R    +SGG++QRVAI   +A  P I+L DEPT  LD    +++
Sbjct: 114 RVEEALELVGLEGLRDRSPFTLSGGQKQRVAIAGVLAMDPDILLLDEPTAGLDPAGRREL 173

Query: 186 FSILKYLVVRSGLAALIATHN-HDLASQMDRQITIRDG 222
             +LK L    G   +I TH+   L    DR I + DG
Sbjct: 174 LELLKKL-KAEGKTIIIVTHDLDLLLELADRVIVLEDG 210


>gnl|CDD|31326 COG1131, CcmA, ABC-type multidrug transport system, ATPase
           component [Defense mechanisms].
          Length = 293

 Score =  145 bits (367), Expect = 1e-35
 Identities = 68/222 (30%), Positives = 124/222 (55%), Gaps = 11/222 (4%)

Query: 5   EVLLLQNVKHSYRQVGKPFPVLENVHLSLKKGEIVALVSPSGTGKSTILH-IAGLLEVPD 63
           EV+ ++N+   Y   G     L+ V   ++ GEI  L+ P+G GK+T+L  +AGLL+ P 
Sbjct: 3   EVIEVRNLTKKY---GGDKTALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLK-PT 58

Query: 64  QGNVIIANQLCNKLSDDKKSFLRCSKIGFVYQEHRLLMDFSVIENIIFPQIIAGINHKTA 123
            G +++       +  +     R  +IG+V QE  L  + +V EN+ F   + G++ + A
Sbjct: 59  SGEILVLGY---DVVKEPAKVRR--RIGYVPQEPSLYPELTVRENLEFFARLYGLSKEEA 113

Query: 124 YQRAMDLLSYMDMSQYANRRSSDISGGEQQRVAICRAIANKPLIILADEPTGNLDLKTAQ 183
            +R  +LL    +   AN++   +SGG +QR++I  A+ + P +++ DEPT  LD ++ +
Sbjct: 114 EERIEELLELFGLEDKANKKVRTLSGGMKQRLSIALALLHDPELLILDEPTSGLDPESRR 173

Query: 184 QVFSILKYLVVRSGLAALIATHNHDLASQM-DRQITIRDGMI 224
           +++ +L+ L    G+  L++TH  + A ++ DR I + DG I
Sbjct: 174 EIWELLRELAKEGGVTILLSTHILEEAEELCDRVIILNDGKI 215


>gnl|CDD|33631 COG3839, MalK, ABC-type sugar transport systems, ATPase components
           [Carbohydrate transport and metabolism].
          Length = 338

 Score =  144 bits (364), Expect = 2e-35
 Identities = 73/217 (33%), Positives = 113/217 (52%), Gaps = 12/217 (5%)

Query: 7   LLLQNVKHSYRQVGKPFPVLENVHLSLKKGEIVALVSPSGTGKSTILH-IAGLLEVPDQG 65
           L L+NV+ S+      F VL++V+L ++ GE V L+ PSG GKST+L  IAGL E P  G
Sbjct: 4   LELKNVRKSF----GSFEVLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEE-PTSG 58

Query: 66  NVIIANQLCNKLSDDKKSFLRCSKIGFVYQEHRLLMDFSVIENIIFPQIIAGINHKTAYQ 125
            ++I  +    L  +K+       I  V+Q + L    +V ENI F   + G+      +
Sbjct: 59  EILIDGRDVTDLPPEKR------GIAMVFQNYALYPHMTVYENIAFGLKLRGVPKAEIDK 112

Query: 126 RAMDLLSYMDMSQYANRRSSDISGGEQQRVAICRAIANKPLIILADEPTGNLDLKTAQQV 185
           R  ++   + +    NR+   +SGG++QRVA+ RA+  KP + L DEP  NLD K    +
Sbjct: 113 RVKEVAKLLGLEHLLNRKPLQLSGGQRQRVALARALVRKPKVFLLDEPLSNLDAKLRVLM 172

Query: 186 FSILKYLVVRSGLAALIATHNHDLASQMDRQITIRDG 222
            S +K L  R G   +  TH+   A  +  +I + + 
Sbjct: 173 RSEIKKLHERLGTTTIYVTHDQVEAMTLADRIVVMND 209


>gnl|CDD|73016 cd03257, ABC_NikE_OppD_transporters, The ABC transporter subfamily
           specific for the transport of dipeptides, oligopeptides
           (OppD), and nickel (NikDE).  The NikABCDE system of E.
           coli belongs to this family and is composed of the
           periplasmic binding protein NikA, two integral membrane
           components (NikB and NikC), and two ATPase (NikD and
           NikE).  The NikABCDE transporter is synthesized under
           anaerobic conditions to meet the increased demand for
           nickel resulting from hydrogenase synthesis.  The
           molecular mechanism of nickel uptake in many bacteria
           and most archaea is not known.  Many other members of
           this ABC family are also involved in the uptake of
           dipeptides and oligopeptides.  The oligopeptide
           transport system (Opp) is a five-component ABC transport
           composed of a membrane-anchored substrate binding
           proteins (SRP), OppA, two transmembrane proteins, OppB
           and OppC, and two ATP-binding domains, OppD and OppF..
          Length = 228

 Score =  143 bits (362), Expect = 4e-35
 Identities = 72/225 (32%), Positives = 116/225 (51%), Gaps = 7/225 (3%)

Query: 6   VLLLQNVKHSYRQVGKPFPVLENVHLSLKKGEIVALVSPSGTGKSTILHIAGLLEVPDQG 65
           +L ++N+  S+   G     L++V  S+KKGE + LV  SG+GKST+      L  P  G
Sbjct: 1   LLEVKNLSVSFPTGGGSVKALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLKPTSG 60

Query: 66  NVIIANQLCNKLSDDKKSFLRCSKIGFVYQEHRLLMD--FSVIENIIFPQIIAGINHKTA 123
           ++I   +   KLS   +   R  +I  V+Q+    ++   ++ E I  P  I G   K  
Sbjct: 61  SIIFDGKDLLKLSRRLRKIRR-KEIQMVFQDPMSSLNPRMTIGEQIAEPLRIHGKLSKKE 119

Query: 124 YQRAMDLLSYMDM---SQYANRRSSDISGGEQQRVAICRAIANKPLIILADEPTGNLDLK 180
            ++   LL  + +    +  NR   ++SGG++QRVAI RA+A  P +++ADEPT  LD+ 
Sbjct: 120 ARKEAVLLLLVGVGLPEEVLNRYPHELSGGQRQRVAIARALALNPKLLIADEPTSALDVS 179

Query: 181 TAQQVFSILKYLVVRSGLAALIATHNHDLASQM-DRQITIRDGMI 224
              Q+  +LK L    GL  L  TH+  + +++ DR   +  G I
Sbjct: 180 VQAQILDLLKKLQEELGLTLLFITHDLGVVAKIADRVAVMYAGKI 224


>gnl|CDD|31320 COG1123, COG1123, ATPase components of various ABC-type transport
           systems, contain duplicated ATPase [General function
           prediction only].
          Length = 539

 Score =  140 bits (355), Expect = 3e-34
 Identities = 68/232 (29%), Positives = 117/232 (50%), Gaps = 10/232 (4%)

Query: 3   SAEVLLLQNVKHSYRQVGKPFPVLENVHLSLKKGEIVALVSPSGTGKSTILH-IAGLLE- 60
            + +L ++N+   +   G   P + +V   ++ GEI+ +V  SG+GKST+   + GLL  
Sbjct: 2   MSPLLEVENLTVEFATDGGRVPAVRDVSFEVEPGEILGIVGESGSGKSTLALALMGLLPE 61

Query: 61  --VPDQGNVIIANQLCNKLSDDKKSFLRCSKIGFVYQEH-RLLMDFSVIENIIF--PQII 115
                 G VI+  +    LS+ +   LR  +I  ++Q+    L     I + I    ++ 
Sbjct: 62  GGRITSGEVILDGRDLLGLSEREMRKLRGKRIAMIFQDPMTSLNPVMTIGDQIREALRLH 121

Query: 116 AGINHKTAYQRAMDLLSYMDMSQYANRRS--SDISGGEQQRVAICRAIANKPLIILADEP 173
              +   A +RA++LL  + +     R      +SGG +QRV I  A+A KP +++ADEP
Sbjct: 122 GKGSRAEARKRAVELLEQVGLPDPERRDRYPHQLSGGMRQRVMIAMALALKPKLLIADEP 181

Query: 174 TGNLDLKTAQQVFSILKYLVVRSGLAALIATHNHDLASQM-DRQITIRDGMI 224
           T  LD+ T  Q+  +LK L    G+A L  TH+  + +++ DR + +  G I
Sbjct: 182 TTALDVTTQAQILDLLKDLQRELGMAVLFITHDLGVVAELADRVVVMYKGEI 233



 Score =  134 bits (340), Expect = 1e-32
 Identities = 61/215 (28%), Positives = 106/215 (49%), Gaps = 3/215 (1%)

Query: 13  KHSYRQVGKPFPVLENVHLSLKKGEIVALVSPSGTGKSTILHIAGLLEVPDQGNVIIANQ 72
           K  + +       +++V   L++GE + LV  SG+GKST+  I   L  P  G++I   Q
Sbjct: 294 KGLFVRERGEVKAVDDVSFDLREGETLGLVGESGSGKSTLARILAGLLPPSSGSIIFDGQ 353

Query: 73  LCNKLSDDKKSFLRCSKIGFVYQEHRLLMDFSVIENIIFP-QIIAGINHKTAYQRAMDLL 131
             +    + +   R  ++ F      L    +V + +  P +I  G +      R  +LL
Sbjct: 354 DLDLTGGELRRLRRRIQMVFQDPYSSLNPRMTVGDILAEPLRIHGGGSGAERRARVAELL 413

Query: 132 SYMDMS-QYANRRSSDISGGEQQRVAICRAIANKPLIILADEPTGNLDLKTAQQVFSILK 190
             + +  ++ +R   ++SGG++QRVAI RA+A +P +++ DEP   LD+    QV ++LK
Sbjct: 414 ELVGLPPEFLDRYPHELSGGQRQRVAIARALALEPKLLILDEPVSALDVSVQAQVLNLLK 473

Query: 191 YLVVRSGLAALIATHNHDLASQM-DRQITIRDGMI 224
            L    GL  L  +H+  +   + DR   + DG I
Sbjct: 474 DLQEELGLTYLFISHDLAVVRYIADRVAVMYDGRI 508


>gnl|CDD|73059 cd03300, ABC_PotA_N, PotA is an ABC-type transporter and the ATPase
           component of the spermidine/putrescine-preferential
           uptake system consisting of PotA, -B, -C, and -D.  PotA
           has two domains with the N-terminal domain containing
           the ATPase activity and the residues required for
           homodimerization with PotA and heterdimerization with
           PotB.  ABC transporters are a large family of proteins
           involved in the transport of a wide variety of different
           compounds, like sugars, ions, peptides, and more complex
           organic molecules.  The nucleotide binding domain shows
           the highest similarity between all members of the
           family.  ABC transporters are a subset of nucleotide
           hydrolases that contain a signature motif, Q-loop, and
           H-loop/switch region, in addition to, the Walker A
           motif/P-loop and Walker B motif commonly found in a
           number of ATP- and GTP-binding and hydrolyzing
           proteins..
          Length = 232

 Score =  139 bits (351), Expect = 7e-34
 Identities = 73/217 (33%), Positives = 110/217 (50%), Gaps = 11/217 (5%)

Query: 9   LQNVKHSYRQVGKPFPVLENVHLSLKKGEIVALVSPSGTGKSTILHIAGLLEVPDQGNVI 68
           L+NV   Y      F  L+ V L +K+GE   L+ PSG GK+T+L +    E P  G ++
Sbjct: 3   LENVSKFYGG----FVALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETPTSGEIL 58

Query: 69  IANQLCNKLSDDKKSFLRCSKIGFVYQEHRLLMDFSVIENIIFPQIIAGINHKTAYQRAM 128
           +  +    L   K+       +  V+Q + L    +V ENI F   +  +      +R  
Sbjct: 59  LDGKDITNLPPHKR------PVNTVFQNYALFPHLTVFENIAFGLRLKKLPKAEIKERVA 112

Query: 129 DLLSYMDMSQYANRRSSDISGGEQQRVAICRAIANKPLIILADEPTGNLDLKTAQQVFSI 188
           + L  + +  YANR+ S +SGG+QQRVAI RA+ N+P ++L DEP G LDLK  + +   
Sbjct: 113 EALDLVQLEGYANRKPSQLSGGQQQRVAIARALVNEPKVLLLDEPLGALDLKLRKDMQLE 172

Query: 189 LKYLVVRSGLAALIATHNHDLASQM-DRQITIRDGMI 224
           LK L    G+  +  TH+ + A  M DR   +  G I
Sbjct: 173 LKRLQKELGITFVFVTHDQEEALTMSDRIAVMNKGKI 209


>gnl|CDD|72988 cd03229, ABC_Class3, This class is comprised of all BPD (Binding
           Protein Dependent) systems that are largely represented
           in archaea and eubacteria and are primarily involved in
           scavenging solutes from the environment.  ABC
           transporters are a large family of proteins involved in
           the transport of a wide variety of different compounds,
           like sugars, ions, peptides, and more complex organic
           molecules.  The nucleotide binding domain shows the
           highest similarity between all members of the family.
           ABC transporters are a subset of nucleotide hydrolases
           that contain a signature motif, Q-loop, and
           H-loop/switch region, in addition to, the Walker A
           motif/P-loop and Walker B motif commonly found in a
           number of ATP- and GTP-binding and hydrolyzing
           proteins..
          Length = 178

 Score =  136 bits (345), Expect = 4e-33
 Identities = 76/217 (35%), Positives = 114/217 (52%), Gaps = 41/217 (18%)

Query: 7   LLLQNVKHSYRQVGKPFPVLENVHLSLKKGEIVALVSPSGTGKSTILHIAGLLEVPDQGN 66
           L L+NV   Y Q      VL +V L+++ GEIVAL+ PSG+GKST+L     LE PD G+
Sbjct: 1   LELKNVSKRYGQK----TVLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEEPDSGS 56

Query: 67  VIIANQLCNKLSDDKKSFLRCSKIGFVYQEHRLLMDFSVIENIIFPQIIAGINHKTAYQR 126
           ++I  +    L D+     R  +IG V+Q+  L    +V+ENI                 
Sbjct: 57  ILIDGEDLTDLEDELPPLRR--RIGMVFQDFALFPHLTVLENIALG-------------- 100

Query: 127 AMDLLSYMDMSQYANRRSSDISGGEQQRVAICRAIANKPLIILADEPTGNLDLKTAQQVF 186
                               +SGG+QQRVA+ RA+A  P ++L DEPT  LD  T ++V 
Sbjct: 101 --------------------LSGGQQQRVALARALAMDPDVLLLDEPTSALDPITRREVR 140

Query: 187 SILKYLVVRSGLAALIATHNHDLASQM-DRQITIRDG 222
           ++LK L  + G+  ++ TH+ D A+++ DR + +RDG
Sbjct: 141 ALLKSLQAQLGITVVLVTHDLDEAARLADRVVVLRDG 177


>gnl|CDD|31315 COG1118, CysA, ABC-type sulfate/molybdate transport systems, ATPase
           component [Inorganic ion transport and metabolism].
          Length = 345

 Score =  133 bits (337), Expect = 3e-32
 Identities = 74/220 (33%), Positives = 120/220 (54%), Gaps = 10/220 (4%)

Query: 9   LQNVKHSYRQVGKPFPVLENVHLSLKKGEIVALVSPSGTGKSTILHIAGLLEVPDQGNVI 68
           + NVK  +      F  L+++ L +K GE+VAL+ PSG GKST+L I   LE PD G + 
Sbjct: 5   INNVKKRFGA----FGALDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLETPDAGRIR 60

Query: 69  IANQLCNKLSDDKKSFLRCSKIGFVYQEHRLLMDFSVIENIIFPQIIAGI--NHKTAYQR 126
           +  ++   L D     +R  K+GFV+Q + L    +V +NI F   +     +      R
Sbjct: 61  LNGRV---LFDVSNLAVRDRKVGFVFQHYALFPHMTVADNIAFGLKVRKERPSEAEIRAR 117

Query: 127 AMDLLSYMDMSQYANRRSSDISGGEQQRVAICRAIANKPLIILADEPTGNLDLKTAQQVF 186
             +LL  + +   A+R  + +SGG++QRVA+ RA+A +P ++L DEP G LD K  +++ 
Sbjct: 118 VEELLRLVQLEGLADRYPAQLSGGQRQRVALARALAVEPKVLLLDEPFGALDAKVRKELR 177

Query: 187 SILKYLVVRSGLAALIATHNHDLASQM-DRQITIRDGMIA 225
             L+ L  R G+  +  TH+ + A ++ DR + +  G I 
Sbjct: 178 RWLRKLHDRLGVTTVFVTHDQEEALELADRVVVLNQGRIE 217


>gnl|CDD|31317 COG1120, FepC, ABC-type cobalamin/Fe3+-siderophores transport
           systems, ATPase components [Inorganic ion transport and
           metabolism / Coenzyme metabolism].
          Length = 258

 Score =  133 bits (337), Expect = 3e-32
 Identities = 70/225 (31%), Positives = 121/225 (53%), Gaps = 15/225 (6%)

Query: 6   VLLLQNVKHSYRQVGKPFPVLENVHLSLKKGEIVALVSPSGTGKSTILH-IAGLLEVPDQ 64
           +L ++N+   Y       P+L+++  S+ KGEI  ++ P+G+GKST+L  +AGLL+ P  
Sbjct: 2   MLEVENLSFGYGGK----PILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLK-PKS 56

Query: 65  GNVIIANQLCNKLSDDKKSFLRCSKIGFVYQEHRLLMDFSVIENII---FP-QIIAGINH 120
           G V++  +    LS   K   +  K+ +V Q        +V E ++   +P   + G   
Sbjct: 57  GEVLLDGKDIASLS--PKELAK--KLAYVPQSPSAPFGLTVYELVLLGRYPHLGLFGRPS 112

Query: 121 KTAYQRAMDLLSYMDMSQYANRRSSDISGGEQQRVAICRAIANKPLIILADEPTGNLDLK 180
           K   +   + L  + +   A+R   ++SGGE+QRV I RA+A +  I+L DEPT +LD+ 
Sbjct: 113 KEDEEIVEEALELLGLEHLADRPVDELSGGERQRVLIARALAQETPILLLDEPTSHLDIA 172

Query: 181 TAQQVFSILKYLVVRSGLAALIATHNHDLASQM-DRQITIRDGMI 224
              +V  +L+ L    GL  ++  H+ +LA++  D  I ++DG I
Sbjct: 173 HQIEVLELLRDLNREKGLTVVMVLHDLNLAARYADHLILLKDGKI 217


>gnl|CDD|33907 COG4161, ArtP, ABC-type arginine transport system, ATPase component
           [Amino acid transport and metabolism].
          Length = 242

 Score =  133 bits (336), Expect = 4e-32
 Identities = 70/193 (36%), Positives = 107/193 (55%), Gaps = 6/193 (3%)

Query: 25  VLENVHLSLKKGEIVALVSPSGTGKSTILHIAGLLEVPDQGNVIIANQ---LCNKLSDDK 81
            L ++ L   +GE + L+ PSG GKS++L +  LLE+P  G + IA          SD  
Sbjct: 17  ALFDITLDCPEGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTPSDKA 76

Query: 82  KSFLRCSKIGFVYQEHRLLMDFSVIENII-FPQIIAGINHKTAYQRAMDLLSYMDMSQYA 140
              LR   +G V+Q++ L    +V EN+I  P  + G++   A  RA  LL  + +  YA
Sbjct: 77  IRDLR-RNVGMVFQQYNLWPHLTVQENLIEAPCRVLGLSKDQALARAEKLLKRLRLKPYA 135

Query: 141 NRRSSDISGGEQQRVAICRAIANKPLIILADEPTGNLDLKTAQQVFSILKYLVVRSGLAA 200
           +R    +SGG+QQRVAI RA+  +P ++L DEPT  LD +   Q+ SI+K L   +G+  
Sbjct: 136 DRYPLHLSGGQQQRVAIARALMMEPQVLLFDEPTAALDPEITAQIVSIIKEL-AETGITQ 194

Query: 201 LIATHNHDLASQM 213
           +I TH  ++A + 
Sbjct: 195 VIVTHEVEVARKT 207


>gnl|CDD|31319 COG1122, CbiO, ABC-type cobalt transport system, ATPase component
           [Inorganic ion transport and metabolism].
          Length = 235

 Score =  131 bits (331), Expect = 1e-31
 Identities = 65/222 (29%), Positives = 113/222 (50%), Gaps = 10/222 (4%)

Query: 6   VLLLQNVKHSYRQVGKPFPVLENVHLSLKKGEIVALVSPSGTGKSTILHIAGLLEVPDQG 65
           ++  +N+   Y         L++V L ++KGE V L+ P+G+GKST+L +   L  P  G
Sbjct: 3   MIEAENLSFRY---PGRKAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKPTSG 59

Query: 66  NVIIANQLCNKLSDDKKSFLRCSKIGFVYQ--EHRLLMDFSVIENIIFPQIIAGINHKTA 123
            V++ + L            +  K+G V+Q  + +L    +V + + F     G+  +  
Sbjct: 60  EVLV-DGLDTSSEKSLLELRQ--KVGLVFQNPDDQLFGP-TVEDEVAFGLENLGLPREEI 115

Query: 124 YQRAMDLLSYMDMSQYANRRSSDISGGEQQRVAICRAIANKPLIILADEPTGNLDLKTAQ 183
            +R  + L  + + +  +R   ++SGG++QRVAI   +A  P I+L DEPT  LD K  +
Sbjct: 116 EERVAEALELVGLEELLDRPPFNLSGGQKQRVAIAGVLAMGPEILLLDEPTAGLDPKGRR 175

Query: 184 QVFSILKYLVVRSGLAALIATHNHDLASQ-MDRQITIRDGMI 224
           ++  +LK L    G   +I TH+ +L  +  DR + + DG I
Sbjct: 176 ELLELLKKLKEEGGKTIIIVTHDLELVLEYADRVVVLDDGKI 217


>gnl|CDD|31325 COG1129, MglA, ABC-type sugar transport system, ATPase component
           [Carbohydrate transport and metabolism].
          Length = 500

 Score =  129 bits (326), Expect = 7e-31
 Identities = 63/230 (27%), Positives = 115/230 (50%), Gaps = 13/230 (5%)

Query: 1   MDSAEVLLLQNVKHSYRQVGKPFPVLENVHLSLKKGEIVALVSPSGTGKSTILHIAGLLE 60
           M +  +L L+ +  S+  V      L+ V L+++ GE+ AL+  +G GKST++ I   + 
Sbjct: 3   MSTPPLLELRGISKSFGGV----KALDGVSLTVRPGEVHALLGENGAGKSTLMKILSGVY 58

Query: 61  VPDQGNVIIANQLCNKLSDDKKSFLRCSKIGFVYQEHRLLMDFSVIENIIFPQIIAG--- 117
            PD G ++I  +     S         + I  V+QE  L+ + SV ENI   +       
Sbjct: 59  PPDSGEILIDGKPVAFSSPRDA---LAAGIATVHQELSLVPNLSVAENIFLGREPTRRFG 115

Query: 118 -INHKTAYQRAMDLLSYMDMSQYANRRSSDISGGEQQRVAICRAIANKPLIILADEPTGN 176
            I+ K   +RA +LL+ + +    +    D+S  ++Q V I RA++    +++ DEPT  
Sbjct: 116 LIDRKAMRRRARELLARLGLDIDPDTLVGDLSIAQRQMVEIARALSFDARVLILDEPTAA 175

Query: 177 LDLKTAQQVFSILKYLVVRSGLAALIATHNHDLASQM-DRQITIRDGMIA 225
           L +K  +++F +++ L    G+A +  +H  D   ++ DR   +RDG + 
Sbjct: 176 LTVKETERLFDLIRRL-KAQGVAIIYISHRLDEVFEIADRITVLRDGRVV 224



 Score = 76.7 bits (189), Expect = 5e-15
 Identities = 42/213 (19%), Positives = 89/213 (41%), Gaps = 18/213 (8%)

Query: 25  VLENVHLSLKKGEIVALVSPSGTGKSTILHIAGLLEVPDQGNVIIANQLCNKLSDDKKSF 84
            + +V  +++ GEI+ +    G G++ +            G +++  +         +S 
Sbjct: 274 KVRDVSFTVRAGEILGIAGLVGAGRTELARALFGARPASSGEILLDGK-----PVRIRSP 328

Query: 85  LRCSKIGFVY-----QEHRLLMDFSVIENIIFPQIIA-----GINHKTAYQRAMDLLSYM 134
               K G  Y     +   L++D S+ ENI    +        I+ +     A   +  +
Sbjct: 329 RDAIKAGIAYVPEDRKSEGLVLDMSIAENITLASLRRFSRRGLIDRRKERALAERYIRRL 388

Query: 135 DMSQY-ANRRSSDISGGEQQRVAICRAIANKPLIILADEPTGNLDLKTAQQVFSILKYLV 193
            +      +    +SGG QQ+V + R +A  P +++ DEPT  +D+    +++ +++ L 
Sbjct: 389 RIKTPSPEQPIGTLSGGNQQKVVLARWLATDPKVLILDEPTRGIDVGAKAEIYRLIREL- 447

Query: 194 VRSGLAALIATHNHDLASQM-DRQITIRDGMIA 225
              G A L+ +        + DR + +R+G I 
Sbjct: 448 AAEGKAILMISSELPELLGLSDRILVMREGRIV 480


>gnl|CDD|73055 cd03296, ABC_CysA_sulfate_importer, Part of the ABC transporter
           complex cysAWTP involved in sulfate import.  Responsible
           for energy coupling to the transport system.  The
           complex is composed of two ATP-binding proteins (cysA),
           two transmembrane proteins (cysT and cysW), and a
           solute-binding protein (cysP).  ABC transporters are a
           large family of proteins involved in the transport of a
           wide variety of different compounds, like sugars, ions,
           peptides, and more complex organic molecules.  The
           nucleotide binding domain shows the highest similarity
           between all members of the family.  ABC transporters are
           a subset of nucleotide hydrolases that contain a
           signature motif, Q-loop, and H-loop/switch region, in
           addition to, the Walker A motif/P-loop and Walker B
           motif commonly found in a number of ATP- and GTP-binding
           and hydrolyzing proteins..
          Length = 239

 Score =  128 bits (323), Expect = 1e-30
 Identities = 62/207 (29%), Positives = 108/207 (52%), Gaps = 11/207 (5%)

Query: 23  FPVLENVHLSLKKGEIVALVSPSGTGKSTILHIAGLLEVPDQGNVIIANQLCNKLSDDKK 82
           F  L++V L +  GE+VAL+ PSG+GK+T+L +   LE PD G ++   +      D   
Sbjct: 15  FVALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERPDSGTILFGGE------DATD 68

Query: 83  SFLRCSKIGFVYQEHRLLMDFSVIENIIF----PQIIAGINHKTAYQRAMDLLSYMDMSQ 138
             ++   +GFV+Q + L    +V +N+ F                  +  +LL  + +  
Sbjct: 69  VPVQERNVGFVFQHYALFRHMTVFDNVAFGLRVKPRSERPPEAEIRAKVHELLKLVQLDW 128

Query: 139 YANRRSSDISGGEQQRVAICRAIANKPLIILADEPTGNLDLKTAQQVFSILKYLVVRSGL 198
            A+R  + +SGG++QRVA+ RA+A +P ++L DEP G LD K  +++   L+ L     +
Sbjct: 129 LADRYPAQLSGGQRQRVALARALAVEPKVLLLDEPFGALDAKVRKELRRWLRRLHDELHV 188

Query: 199 AALIATHNHDLASQM-DRQITIRDGMI 224
             +  TH+ + A ++ DR + +  G I
Sbjct: 189 TTVFVTHDQEEALEVADRVVVMNKGRI 215


>gnl|CDD|30793 COG0444, DppD, ABC-type dipeptide/oligopeptide/nickel transport
           system, ATPase component [Amino acid transport and
           metabolism / Inorganic ion transport and metabolism].
          Length = 316

 Score =  126 bits (319), Expect = 4e-30
 Identities = 67/232 (28%), Positives = 118/232 (50%), Gaps = 13/232 (5%)

Query: 6   VLLLQNVKHSYRQVGKPFPVLENVHLSLKKGEIVALVSPSGTGKSTILH-IAGLLEVPDQ 64
           +L ++N+  S+         ++ V   LKKGEI+ +V  SG+GKS +   I GLL  P+ 
Sbjct: 1   LLEVKNLSVSFPTDAGVVKAVDGVSFELKKGEILGIVGESGSGKSVLAKAIMGLLPKPNA 60

Query: 65  ----GNVIIANQLCNKLSDDKKSFLRCSKIGFVYQEHRLLMD-FSVIENIIFPQIIA--- 116
               G ++   +    LS+ +   +R  +I  ++Q+    ++    I + I   +     
Sbjct: 61  RIVGGEILFDGKDLLSLSEKELRKIRGKEIAMIFQDPMTSLNPVMTIGDQIAEVLRLHGK 120

Query: 117 GINHKTAYQRAMDLLSYMDMSQYANRRSS---DISGGEQQRVAICRAIANKPLIILADEP 173
           G++ K A +RA++LL  + +     R  S   ++SGG +QRV I  A+A  P +++ADEP
Sbjct: 121 GLSKKEAKERAIELLELVGIPDPERRLKSYPHELSGGMRQRVMIAMALALNPKLLIADEP 180

Query: 174 TGNLDLKTAQQVFSILKYLVVRSGLAALIATHNHDLASQM-DRQITIRDGMI 224
           T  LD+    Q+  +LK L    G A ++ TH+  + +++ DR   +  G I
Sbjct: 181 TTALDVTVQAQILDLLKELQREKGTALILITHDLGVVAEIADRVAVMYAGRI 232


>gnl|CDD|73060 cd03301, ABC_MalK_N, The N-terminal ATPase domain of the maltose
           transporter, MalK.  ATP binding cassette (ABC) proteins
           function from bacteria to human, mediating the
           translocation of substances into and out of cells or
           organelles.  ABC transporters contain two
           transmembrane-spanning domains (TMDs) or subunits and
           two nucleotide binding domains (NBDs) or subunits that
           couple transport to the hydrolysis of ATP.  In the
           maltose transport system, the periplasmic maltose
           binding protein (MBP) stimulates the ATPase activity of
           the membrane-associated transporter, which consists of
           two transmembrane subunits, MalF and MalG, and two
           copies of the ATP binding subunit, MalK, and becomes
           tightly bound to the transporter in the catalytic
           transition state, ensuring that maltose is passed to the
           transporter as ATP is hydrolyzed..
          Length = 213

 Score =  124 bits (313), Expect = 2e-29
 Identities = 69/220 (31%), Positives = 106/220 (48%), Gaps = 13/220 (5%)

Query: 7   LLLQNVKHSYRQVGKPFPVLENVHLSLKKGEIVALVSPSGTGKSTILH-IAGLLEVPDQG 65
           + L+NV   +         L++++L +  GE V L+ PSG GK+T L  IAGL E P  G
Sbjct: 1   VELENVTKRF----GNVTALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGL-EEPTSG 55

Query: 66  NVIIANQLCNKLSDDKKSFLRCSKIGFVYQEHRLLMDFSVIENIIFPQIIAGINHKTAYQ 125
            + I  +    L    +       I  V+Q + L    +V +NI F   +  +      +
Sbjct: 56  RIYIGGRDVTDLPPKDRD------IAMVFQNYALYPHMTVYDNIAFGLKLRKVPKDEIDE 109

Query: 126 RAMDLLSYMDMSQYANRRSSDISGGEQQRVAICRAIANKPLIILADEPTGNLDLKTAQQV 185
           R  ++   + +    +R+   +SGG++QRVA+ RAI  +P + L DEP  NLD K   Q+
Sbjct: 110 RVREVAELLQIEHLLDRKPKQLSGGQRQRVALGRAIVREPKVFLMDEPLSNLDAKLRVQM 169

Query: 186 FSILKYLVVRSGLAALIATHNHDLASQM-DRQITIRDGMI 224
            + LK L  R G   +  TH+   A  M DR   + DG I
Sbjct: 170 RAELKRLQQRLGTTTIYVTHDQVEAMTMADRIAVMNDGQI 209


>gnl|CDD|73020 cd03261, ABC_Org_Solvent_Resistant, ABC (ATP-binding cassette)
           transport system involved in resistant to organic
           solvents; ABC transporters are a large family of
           proteins involved in the transport of a wide variety of
           different compounds, like sugars, ions, peptides, and
           more complex organic molecules.  The nucleotide binding
           domain shows the highest similarity between all members
           of the family.  ABC transporters are a subset of
           nucleotide hydrolases that contain a signature motif,
           Q-loop, and H-loop/switch region, in addition to, the
           Walker A motif/P-loop and Walker B motif commonly found
           in a number of ATP- and GTP-binding and hydrolyzing
           proteins..
          Length = 235

 Score =  124 bits (312), Expect = 2e-29
 Identities = 68/209 (32%), Positives = 115/209 (55%), Gaps = 15/209 (7%)

Query: 24  PVLENVHLSLKKGEIVALVSPSGTGKSTIL-HIAGLLEVPDQGNVIIANQLCNKLSDDKK 82
            VL+ V L +++GEI+A++ PSG+GKST+L  I GLL  PD G V+I  +  + LS+ + 
Sbjct: 14  TVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLR-PDSGEVLIDGEDISGLSEAEL 72

Query: 83  SFLRCSKIGFVYQEHRLLMDFSVIENIIFPQIIAGINHKTAY------QRAMDLLSYMDM 136
             LR  ++G ++Q   L    +V EN+ FP     +   T        +  ++ L  + +
Sbjct: 73  YRLRR-RMGMLFQSGALFDSLTVFENVAFP-----LREHTRLSEEEIREIVLEKLEAVGL 126

Query: 137 SQYANRRSSDISGGEQQRVAICRAIANKPLIILADEPTGNLDLKTAQQVFSILKYLVVRS 196
               +   +++SGG ++RVA+ RA+A  P ++L DEPT  LD   +  +  +++ L    
Sbjct: 127 RGAEDLYPAELSGGMKKRVALARALALDPELLLYDEPTAGLDPIASGVIDDLIRSLKKEL 186

Query: 197 GLAALIATHNHDLASQM-DRQITIRDGMI 224
           GL +++ TH+ D A  + DR   + DG I
Sbjct: 187 GLTSIMVTHDLDTAFAIADRIAVLYDGKI 215


>gnl|CDD|31321 COG1124, DppF, ABC-type dipeptide/oligopeptide/nickel transport
           system, ATPase component [Amino acid transport and
           metabolism / Inorganic ion transport and metabolism].
          Length = 252

 Score =  124 bits (312), Expect = 3e-29
 Identities = 64/225 (28%), Positives = 115/225 (51%), Gaps = 9/225 (4%)

Query: 4   AEVLLLQNVKHSYRQVGKPFPVLENVHLSLKKGEIVALVSPSGTGKSTILHIAGLLEVPD 63
             +L ++N+   Y      F  L NV L +++GE + +V  SG+GKST+  +   LE P 
Sbjct: 1   MTLLSVRNLSIVYGGGKFAFHALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEKPS 60

Query: 64  QGNVIIANQLCNKLSDDKKSFLRCSKIGFVYQE-HRLLMDFSVIENIIF-PQIIAGINHK 121
            G++++  +    L+  K++      +  V+Q+ +  L     +  I+  P    G+   
Sbjct: 61  SGSILLDGK---PLAPKKRAKAFYRPVQMVFQDPYSSLNPRRTVGRILSEPLRPHGL--S 115

Query: 122 TAYQRAMDLLSYMDMSQ-YANRRSSDISGGEQQRVAICRAIANKPLIILADEPTGNLDLK 180
            + QR  +LL  + +   + +RR  ++SGG++QR+AI RA+  +P +++ DEPT  LD+ 
Sbjct: 116 KSQQRIAELLDQVGLPPSFLDRRPHELSGGQRQRIAIARALIPEPKLLILDEPTSALDVS 175

Query: 181 TAQQVFSILKYLVVRSGLAALIATHNHDLASQM-DRQITIRDGMI 224
              Q+ ++L  L    GL  L  +H+  L   M DR   + +G I
Sbjct: 176 VQAQILNLLLELKKERGLTYLFISHDLALVEHMCDRIAVMDNGQI 220


>gnl|CDD|31322 COG1125, OpuBA, ABC-type proline/glycine betaine transport systems,
           ATPase components [Amino acid transport and metabolism].
          Length = 309

 Score =  122 bits (308), Expect = 6e-29
 Identities = 74/219 (33%), Positives = 118/219 (53%), Gaps = 11/219 (5%)

Query: 9   LQNVKHSYRQVGKPFPVLENVHLSLKKGEIVALVSPSGTGKSTILHIAGLLEVPDQGNVI 68
            +NV   Y         +++V+L++++GE + L+ PSG+GK+T L +   L  P  G ++
Sbjct: 4   FENVSKRY----GNKKAVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEPTSGEIL 59

Query: 69  IANQLCNKLSDDKKSFLRCSKIGFVYQEHRLLMDFSVIENIIFPQIIAGINHKTAYQRAM 128
           I  +    +SD     LR  KIG+V Q+  L    +V ENI     + G + +   +RA 
Sbjct: 60  IDGE---DISDLDPVELR-RKIGYVIQQIGLFPHLTVAENIATVPKLLGWDKERIKKRAD 115

Query: 129 DLLSYMDM--SQYANRRSSDISGGEQQRVAICRAIANKPLIILADEPTGNLDLKTAQQVF 186
           +LL  + +  S+YA+R   ++SGG+QQRV + RA+A  P I+L DEP G LD  T +Q+ 
Sbjct: 116 ELLDLVGLDPSEYADRYPHELSGGQQQRVGVARALAADPPILLMDEPFGALDPITRKQLQ 175

Query: 187 SILKYLVVRSGLAALIATHNHDLASQM-DRQITIRDGMI 224
             +K L    G   +  TH+ D A ++ DR   +  G I
Sbjct: 176 EEIKELQKELGKTIVFVTHDIDEALKLADRIAVMDAGEI 214


>gnl|CDD|72977 cd03218, ABC_YhbG, The ABC transporters belonging to the YhbG
           family are similar to members of the Mj1267_LivG family,
           which is involved in the transport of branched-chain
           amino acids.  The genes yhbG and yhbN are located in a
           single operon and may function together in cell envelope
           during biogenesis.  YhbG is the putative ATP-binding
           cassette component and YhbN is the putative
           periplasmic-binding protein.  Depletion of each gene
           product leads to growth arrest, irreversible cell damage
           and loss of viability in E. coli.  The YhbG homolog
           (NtrA) is essential in Rhizobium meliloti, a symbiotic
           nitrogen-fixing bacterium..
          Length = 232

 Score =  122 bits (308), Expect = 7e-29
 Identities = 72/219 (32%), Positives = 113/219 (51%), Gaps = 9/219 (4%)

Query: 7   LLLQNVKHSYRQVGKPFPVLENVHLSLKKGEIVALVSPSGTGKSTILHIAGLLEVPDQGN 66
           L  +N+   Y        V+  V LS+K+GEIV L+ P+G GK+T  ++   L  PD G 
Sbjct: 1   LRAENLSKRY----GKRKVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPDSGK 56

Query: 67  VIIANQLCNKLSDDKKSFLRCSKIGFVYQEHRLLMDFSVIENIIFPQIIAGINHKTAYQR 126
           +++  Q   KL   K++ L    IG++ QE  +    +V ENI+    I G++ K   ++
Sbjct: 57  ILLDGQDITKLPMHKRARL---GIGYLPQEASIFRKLTVEENILAVLEIRGLSKKEREEK 113

Query: 127 AMDLLSYMDMSQYANRRSSDISGGEQQRVAICRAIANKPLIILADEPTGNLDLKTAQQVF 186
             +LL    ++     ++S +SGGE++RV I RA+A  P  +L DEP   +D    Q + 
Sbjct: 114 LEELLEEFHITHLRKSKASSLSGGERRRVEIARALATNPKFLLLDEPFAGVDPIAVQDIQ 173

Query: 187 SILKYLVVRSGLAALIATHN-HDLASQMDRQITIRDGMI 224
            I+K L  R G+  LI  HN  +  S  DR   I +G +
Sbjct: 174 KIIKILKDR-GIGVLITDHNVRETLSITDRAYIIYEGKV 211


>gnl|CDD|31324 COG1127, Ttg2A, ABC-type transport system involved in resistance to
           organic solvents, ATPase component [Secondary
           metabolites biosynthesis, transport, and catabolism].
          Length = 263

 Score =  121 bits (305), Expect = 1e-28
 Identities = 64/207 (30%), Positives = 112/207 (54%), Gaps = 12/207 (5%)

Query: 25  VLENVHLSLKKGEIVALVSPSGTGKSTILHIAGLLEVPDQGNVIIANQLCNKLSDDKKSF 84
           +L+ V L + +GEI+A++  SG+GKST+L +   L  PD+G ++I  +   +LS+++   
Sbjct: 23  ILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLRPDKGEILIDGEDIPQLSEEELYE 82

Query: 85  LRCSKIGFVYQEHRLLMDFSVIENIIFPQIIAGINHKTAYQRAMDLLSYMDMSQ------ 138
           +R  ++G ++Q+  L    +V EN+ FP       H    +  +  L  M +        
Sbjct: 83  IR-KRMGVLFQQGALFSSLTVFENVAFPL----REHTKLPESLIRELVLMKLELVGLRGA 137

Query: 139 YANRRSSDISGGEQQRVAICRAIANKPLIILADEPTGNLDLKTAQQVFSILKYLVVRSGL 198
            A+   S++SGG ++RVA+ RAIA  P ++  DEPT  LD  +A  +  +++ L    GL
Sbjct: 138 AADLYPSELSGGMRKRVALARAIALDPELLFLDEPTSGLDPISAGVIDELIRELNDALGL 197

Query: 199 AALIATHNHD-LASQMDRQITIRDGMI 224
             ++ TH+ D L +  DR   + DG +
Sbjct: 198 TVIMVTHDLDSLLTIADRVAVLADGKV 224


>gnl|CDD|34177 COG4525, TauB, ABC-type taurine transport system, ATPase component
           [Inorganic ion transport and metabolism].
          Length = 259

 Score =  120 bits (302), Expect = 4e-28
 Identities = 62/218 (28%), Positives = 112/218 (51%), Gaps = 11/218 (5%)

Query: 5   EVLLLQNVKHSYRQVGKPFPVLENVHLSLKKGEIVALVSPSGTGKSTILHIAGLLEVPDQ 64
            +L + ++  SY   GKP   LE+V L++  GE+V ++ PSG GK+T+L++      P +
Sbjct: 2   CMLNVSHLSLSYE--GKPRSALEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGFVTPSR 59

Query: 65  GNVIIANQLCNKLSDDKKSFLRCSKIGFVYQEHRLLMDFSVIENIIFPQIIAGINHKTAY 124
           G++ +  +       ++         G V+Q   LL   +VI+N+ F   + GI      
Sbjct: 60  GSIQLNGRRIEGPGAER---------GVVFQNEALLPWLNVIDNVAFGLQLRGIEKAQRR 110

Query: 125 QRAMDLLSYMDMSQYANRRSSDISGGEQQRVAICRAIANKPLIILADEPTGNLDLKTAQQ 184
           + A  +L+ + +    ++    +SGG +QRV I RA+A +P ++L DEP G LD  T +Q
Sbjct: 111 EIAHQMLALVGLEGAEHKYIWQLSGGMRQRVGIARALAVEPQLLLLDEPFGALDALTREQ 170

Query: 185 VFSILKYLVVRSGLAALIATHNHDLASQMDRQITIRDG 222
           +  +L  L   +G   L+ TH+ + A  +  ++ +   
Sbjct: 171 MQELLLDLWQETGKQVLLITHDIEEALFLATRLVVLSP 208


>gnl|CDD|73053 cd03294, ABC_Pro_Gly_Bertaine, This family comprises the glycine
           betaine/L-proline ATP binding subunit in bacteria and
           its equivalents in archaea.  This transport system
           belong to the larger ATP-Binding Cassette (ABC)
           transporter superfamily.  The characteristic feature of
           these transporters is the obligatory coupling of ATP
           hydrolysis to substrate translocation.  ABC transporters
           are a subset of nucleotide hydrolases that contain a
           signature motif, Q-loop, and H-loop/switch region, in
           addition to, the Walker A motif/P-loop and Walker B
           motif commonly found in a number of ATP- and GTP-binding
           and hydrolyzing proteins..
          Length = 269

 Score =  119 bits (301), Expect = 5e-28
 Identities = 64/206 (31%), Positives = 105/206 (50%), Gaps = 3/206 (1%)

Query: 21  KPFPVLENVHLSLKKGEIVALVSPSGTGKSTIL-HIAGLLEVPDQGNVIIANQLCNKLSD 79
                + +V L +++GEI  ++  SG+GKST+L  I  L+E P  G V+I  Q    +S 
Sbjct: 35  GQTVGVNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIE-PTSGKVLIDGQDIAAMSR 93

Query: 80  DKKSFLRCSKIGFVYQEHRLLMDFSVIENIIFPQIIAGINHKTAYQRAMDLLSYMDMSQY 139
            +   LR  KI  V+Q   LL   +V+EN+ F   + G+      +RA + L  + +  +
Sbjct: 94  KELRELRRKKISMVFQSFALLPHRTVLENVAFGLEVQGVPRAEREERAAEALELVGLEGW 153

Query: 140 ANRRSSDISGGEQQRVAICRAIANKPLIILADEPTGNLDLKTAQQVFSILKYLVVRSGLA 199
            ++   ++SGG QQRV + RA+A  P I+L DE    LD    +++   L  L       
Sbjct: 154 EHKYPDELSGGMQQRVGLARALAVDPDILLMDEAFSALDPLIRREMQDELLRLQAELQKT 213

Query: 200 ALIATHNHDLASQM-DRQITIRDGMI 224
            +  TH+ D A ++ DR   ++DG +
Sbjct: 214 IVFITHDLDEALRLGDRIAIMKDGRL 239


>gnl|CDD|31318 COG1121, ZnuC, ABC-type Mn/Zn transport systems, ATPase component
           [Inorganic ion transport and metabolism].
          Length = 254

 Score =  119 bits (300), Expect = 7e-28
 Identities = 68/229 (29%), Positives = 119/229 (51%), Gaps = 21/229 (9%)

Query: 6   VLLLQNVKHSYRQVGKPFPVLENVHLSLKKGEIVALVSPSGTGKSTILH-IAGLLEVPDQ 64
           ++ ++N+  SY       PVLE++ LS++KGEI AL+ P+G GKST+L  I GLL+ P  
Sbjct: 4   MIEVENLTVSYGNR----PVLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLK-PSS 58

Query: 65  GNVIIANQLCNKLSDDKKSFLRCSKIGFVYQEHRLLMDF--SVIENIIFPQIIA----GI 118
           G + I  +   K     +       IG+V Q+  +   F  +V + ++  +         
Sbjct: 59  GEIKIFGKPVRKRRKRLR-------IGYVPQKSSVDRSFPITVKDVVLLGRYGKKGWFRR 111

Query: 119 NHKTAYQRAMDLLSYMDMSQYANRRSSDISGGEQQRVAICRAIANKPLIILADEPTGNLD 178
            +K   ++  + L  + M    +R+  ++SGG++QRV + RA+A  P ++L DEP   +D
Sbjct: 112 LNKKDKEKVDEALERVGMEDLRDRQIGELSGGQKQRVLLARALAQNPDLLLLDEPFTGVD 171

Query: 179 LKTAQQVFSILKYLVVRSGLAALIATHNHDLASQ-MDRQITIRDGMIAD 226
           +   ++++ +LK L  + G   L+ TH+  L     DR I +   +IA 
Sbjct: 172 VAGQKEIYDLLKEL-RQEGKTVLMVTHDLGLVMAYFDRVICLNRHLIAS 219


>gnl|CDD|73019 cd03260, ABC_PstB_phosphate_transporter, Phosphate uptake is of
           fundamental importance in the cell physiology of
           bacteria because phosphate is required as a nutrient.
           The Pst system of E. coli comprises four distinct
           subunits encoded by the pstS, pstA, pstB, and pstC
           genes.  The PstS protein is a phosphate-binding protein
           located in the periplasmic space. P stA and PstC are
           hydrophobic and they form the transmembrane portion of
           the Pst system.  PstB is the catalytic subunit, which
           couples the energy of ATP hydrolysis to the import of
           phosphate across cellular membranes through the Pst
           system, often referred as ABC-protein.  PstB belongs to
           one of the largest superfamilies of proteins
           characterized by a highly conserved adenosine
           triphosphate (ATP) binding cassette (ABC), which is also
           a nucleotide binding domain (NBD)..
          Length = 227

 Score =  118 bits (297), Expect = 2e-27
 Identities = 59/206 (28%), Positives = 100/206 (48%), Gaps = 17/206 (8%)

Query: 9   LQNVKHSYRQVGKPFPVLENVHLSLKKGEIVALVSPSGTGKSTILHIAGLL-----EVPD 63
           L+++   Y         L+++ L + KGEI AL+ PSG GKST+L +   L       PD
Sbjct: 3   LRDLNVYY----GDKHALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAPD 58

Query: 64  QGNVIIANQLCNKLSDDKKSFLRCSKIGFVYQEHRLLMDFSVIENIIFPQIIAGI-NHKT 122
           +G V++  +    L  D     R  ++G V+Q        S+ +N+ +   + GI   + 
Sbjct: 59  EGEVLLDGKDIYDLDVDVLELRR--RVGMVFQ-KPNPFPGSIYDNVAYGLRLHGIKLKEE 115

Query: 123 AYQRAMDLLSYMDMSQYANRRSS--DISGGEQQRVAICRAIANKPLIILADEPTGNLDLK 180
             +R  + L    +      R     +SGG+QQR+ + RA+AN+P ++L DEPT  LD  
Sbjct: 116 LDERVEEALRKAALWDEVKDRLHALGLSGGQQQRLCLARALANEPEVLLLDEPTSALDPI 175

Query: 181 TAQQVFSILKYLVVRSGLAALIATHN 206
           +  ++  ++  L  +     +I THN
Sbjct: 176 STAKIEELIAEL--KKEYTIVIVTHN 199


>gnl|CDD|72973 cd03214, ABC_Iron-Siderophores_B12_Hemin, ABC transporters,
           involved in the uptake of siderophores, heme, and
           vitamin B12, are widely conserved in bacteria and
           archaea.  Only very few species lack representatives of
           the siderophore family transporters.  The E. coli BtuCD
           protein is an ABC transporter mediating vitamin B12
           uptake.  The two ATP-binding cassettes (BtuD) are in
           close contact with each other, as are the two
           membrane-spanning subunits (BtuC); this arrangement is
           distinct from that observed for the E. coli lipid
           flippase MsbA.  The BtuC subunits provide 20
           transmembrane helices grouped around a translocation
           pathway that is closed to the cytoplasm by a gate
           region, whereas the dimer arrangement of the BtuD
           subunits resembles the ATP-bound form of the Rad50 DNA
           repair enzyme.  A prominent cytoplasmic loop of BtuC
           forms the contact region with the ATP-binding cassette
           and represent a conserved motif among the ABC
           transporters..
          Length = 180

 Score =  117 bits (294), Expect = 3e-27
 Identities = 64/218 (29%), Positives = 110/218 (50%), Gaps = 45/218 (20%)

Query: 9   LQNVKHSYRQVGKPFPVLENVHLSLKKGEIVALVSPSGTGKSTILH-IAGLLEVPDQGNV 67
           ++N+   Y        VL+++ LS++ GEIV ++ P+G GKST+L  +AGLL+ P  G +
Sbjct: 2   VENLSVGYGGR----TVLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLK-PSSGEI 56

Query: 68  IIANQLCNKLSDDKKSFLRCSKIGFVYQEHRLLMDFSVIENIIFPQIIAGINHKTAYQRA 127
           ++  +    LS  +       KI +V                  PQ              
Sbjct: 57  LLDGKDLASLSPKE----LARKIAYV------------------PQA------------- 81

Query: 128 MDLLSYMDMSQYANRRSSDISGGEQQRVAICRAIANKPLIILADEPTGNLDLKTAQQVFS 187
              L  + ++  A+R  +++SGGE+QRV + RA+A +P I+L DEPT +LD+    ++  
Sbjct: 82  ---LELLGLAHLADRPFNELSGGERQRVLLARALAQEPPILLLDEPTSHLDIAHQIELLE 138

Query: 188 ILKYLVVRSGLAALIATHNHDLASQM-DRQITIRDGMI 224
           +L+ L    G   ++  H+ +LA++  DR I ++DG I
Sbjct: 139 LLRRLARERGKTVVMVLHDLNLAARYADRVILLKDGRI 176


>gnl|CDD|34233 COG4598, HisP, ABC-type histidine transport system, ATPase
           component [Amino acid transport and metabolism].
          Length = 256

 Score =  116 bits (293), Expect = 4e-27
 Identities = 61/203 (30%), Positives = 107/203 (52%), Gaps = 11/203 (5%)

Query: 25  VLENVHLSLKKGEIVALVSPSGTGKSTILHIAGLLEVPDQGNVIIANQLCNKLSD----- 79
           VL+ V L    G++++++  SG+GKST L     LE P  G++ +  +      D     
Sbjct: 21  VLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSAGSIRVNGEEIRLKRDKDGQL 80

Query: 80  ---DKKSFLRC-SKIGFVYQEHRLLMDFSVIENII-FPQIIAGINHKTAYQRAMDLLSYM 134
              DK+   R  +++G V+Q   L    +V+EN+I  P  + G++   A +RA   L+ +
Sbjct: 81  KPADKRQLQRLRTRLGMVFQHFNLWSHMTVLENVIEAPVHVLGVSKAEAIERAEKYLAKV 140

Query: 135 DMSQYANRRSSDISGGEQQRVAICRAIANKPLIILADEPTGNLDLKTAQQVFSILKYLVV 194
            +++ A+   + +SGG+QQRVAI RA+A +P ++L DEPT  LD +   +V  +++ L  
Sbjct: 141 GIAEKADAYPAHLSGGQQQRVAIARALAMEPEVMLFDEPTSALDPELVGEVLKVMQDL-A 199

Query: 195 RSGLAALIATHNHDLASQMDRQI 217
             G   ++ TH    A  +   +
Sbjct: 200 EEGRTMVVVTHEMGFARDVSSHV 222


>gnl|CDD|73025 cd03266, ABC_NatA_sodium_exporter, NatA is the ATPase component of
           a bacterial ABC-type Na+ transport system called NatAB,
           which catalyzes ATP-dependent electrogenic Na+ extrusion
           without mechanically coupled proton or K+ uptake.  NatB
           possess six putative membrane spanning regions at its
           C-terminus.  In B. subtilus, NatAB is inducible by
           agents such as ethanol and protonophores, which lower
           the protonmotive force across the membrane.  The closest
           sequence similarity to NatA is exhibited by DrrA of the
           two-component daunomycin- and doxorubicin-efflux system.
            Hence, the functional NatAB is presumably assembled
           with two copies of a single ATP-binding protein and a
           single intergral membrane protein..
          Length = 218

 Score =  116 bits (291), Expect = 7e-27
 Identities = 55/222 (24%), Positives = 99/222 (44%), Gaps = 7/222 (3%)

Query: 6   VLLLQNVKHSYRQVGKPFPVLENVHLSLKKGEIVALVSPSGTGKSTILHIAGLLEVPDQG 65
           ++    +   +R V K    ++ V  ++K GE+  L+ P+G GK+T L +   L  PD G
Sbjct: 1   MITADALTKRFRDVKKTVQAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPDAG 60

Query: 66  NVIIANQLCNKLSDDKKSFLRCSKIGFVYQEHRLLMDFSVIENIIFPQIIAGINHKTAYQ 125
              +      K   + +      ++GFV     L    +  EN+ +   + G+       
Sbjct: 61  FATVDGFDVVKEPAEARR-----RLGFVSDSTGLYDRLTARENLEYFAGLYGLKGDELTA 115

Query: 126 RAMDLLSYMDMSQYANRRSSDISGGEQQRVAICRAIANKPLIILADEPTGNLDLKTAQQV 185
           R  +L   + M +  +RR    S G +Q+VAI RA+ + P ++L DEPT  LD+   + +
Sbjct: 116 RLEELADRLGMEELLDRRVGGFSTGMRQKVAIARALVHDPPVLLLDEPTTGLDVMATRAL 175

Query: 186 FSILKYLVVRSGLAALIATHN-HDLASQMDRQITIRDGMIAD 226
              ++ L    G   L +TH   ++    DR + +  G +  
Sbjct: 176 REFIRQL-RALGKCILFSTHIMQEVERLCDRVVVLHRGRVVY 216


>gnl|CDD|73058 cd03299, ABC_ModC_like, Archeal protein closely related to ModC.
           ModC is an ABC-type transporter and the ATPase component
           of a molybdate transport system that also includes the
           periplasmic binding protein ModA and the membrane
           protein ModB.  ABC transporters are a large family of
           proteins involved in the transport of a wide variety of
           different compounds, like sugars, ions, peptides, and
           more complex organic molecules.  The nucleotide binding
           domain shows the highest similarity between all members
           of the family.  ABC transporters are a subset of
           nucleotide hydrolases that contain a signature motif,
           Q-loop, and H-loop/switch region, in addition to, the
           Walker A motif/P-loop and Walker B motif commonly found
           in a number of ATP- and GTP-binding and hydrolyzing
           proteins..
          Length = 235

 Score =  115 bits (290), Expect = 1e-26
 Identities = 59/202 (29%), Positives = 109/202 (53%), Gaps = 9/202 (4%)

Query: 25  VLENVHLSLKKGEIVALVSPSGTGKSTILH-IAGLLEVPDQGNVIIANQLCNKLSDDKKS 83
            L+NV L +++G+   ++ P+G+GKS +L  IAG ++ PD G +++  +    L  +K+ 
Sbjct: 14  KLKNVSLEVERGDYFVILGPTGSGKSVLLETIAGFIK-PDSGKILLNGKDITNLPPEKR- 71

Query: 84  FLRCSKIGFVYQEHRLLMDFSVIENIIFPQIIAGINHKTAYQRAMDLLSYMDMSQYANRR 143
                 I +V Q + L    +V +NI +      ++ K   ++ +++   + +    NR+
Sbjct: 72  -----DISYVPQNYALFPHMTVYKNIAYGLKKRKVDKKEIERKVLEIAEMLGIDHLLNRK 126

Query: 144 SSDISGGEQQRVAICRAIANKPLIILADEPTGNLDLKTAQQVFSILKYLVVRSGLAALIA 203
              +SGGEQQRVAI RA+   P I+L DEP   LD++T +++   LK +    G+  L  
Sbjct: 127 PETLSGGEQQRVAIARALVVNPKILLLDEPFSALDVRTKEKLREELKKIRKEFGVTVLHV 186

Query: 204 THNHDLASQM-DRQITIRDGMI 224
           TH+ + A  + D+   + +G +
Sbjct: 187 THDFEEAWALADKVAIMLNGKL 208


>gnl|CDD|72994 cd03235, ABC_Metallic_Cations, ABC component of the metal-type
           transporters.  This family includes transporters
           involved in the uptake of various metallic cations such
           as iron, manganese, and zinc.  The ATPases of this group
           of transporters are very similar to members of
           iron-siderophore uptake family suggesting that they
           share a common ancestor.  The best characterized
           metal-type ABC transporters are the YfeABCD system of Y.
           pestis, the SitABCD system of Salmonella enterica
           serovar Typhimurium, and the SitABCD transporter of
           Shigella flexneri.  Moreover other uncharacterized
           homologs of these metal-type transporters are mainly
           found in pathogens like Haemophilus or enteroinvasive E.
           coli isolates..
          Length = 213

 Score =  114 bits (287), Expect = 2e-26
 Identities = 63/205 (30%), Positives = 107/205 (52%), Gaps = 22/205 (10%)

Query: 9   LQNVKHSYRQVGKPFPVLENVHLSLKKGEIVALVSPSGTGKSTILH-IAGLLEVPDQGNV 67
           ++++  SY       PVLE+V   +K GE +A+V P+G GKST+L  I GLL+ P  G++
Sbjct: 2   VEDLTVSYGGH----PVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLK-PTSGSI 56

Query: 68  IIANQLCNKLSDDKKSFLRCSKIGFVYQEHRLLMDF--SVIENI---IFPQIIA-GINHK 121
            +           K       +IG+V Q   +  DF  SV + +   ++          K
Sbjct: 57  RV---------FGKPLEKERKRIGYVPQRRSIDRDFPISVRDVVLMGLYGHKGLFRRLSK 107

Query: 122 TAYQRAMDLLSYMDMSQYANRRSSDISGGEQQRVAICRAIANKPLIILADEPTGNLDLKT 181
               +  + L  + +S+ A+R+  ++SGG+QQRV + RA+   P ++L DEP   +D KT
Sbjct: 108 ADKAKVDEALERVGLSELADRQIGELSGGQQQRVLLARALVQDPDLLLLDEPFAGVDPKT 167

Query: 182 AQQVFSILKYLVVRSGLAALIATHN 206
            + ++ +L+ L  R G+  L+ TH+
Sbjct: 168 QEDIYELLREL-RREGMTILVVTHD 191


>gnl|CDD|73054 cd03295, ABC_OpuCA_Osmoprotection, OpuCA is a the ATP binding
           component of a bacterial solute transporter that serves
           a protective role to cells growing in a hyperosmolar
           environment.  ABC (ATP-binding cassette) transporter
           nucleotide-binding domain; ABC transporters are a large
           family of proteins involved in the transport of a wide
           variety of different compounds, like sugars, ions,
           peptides, and more complex organic molecules.  The
           nucleotide binding domain shows the highest similarity
           between all members of the family.  ABC transporters are
           a subset of nucleotide hydrolases that contain a
           signature motif, Q-loop, and H-loop/switch region, in
           addition, to the Walker A motif/P-loop and Walker B
           motif commonly found in a number of ATP- and GTP-binding
           and hydrolyzing proteins..
          Length = 242

 Score =  114 bits (286), Expect = 2e-26
 Identities = 67/216 (31%), Positives = 109/216 (50%), Gaps = 9/216 (4%)

Query: 9   LQNVKHSYRQVGKPFPVLENVHLSLKKGEIVALVSPSGTGKSTILHIAGLLEVPDQGNVI 68
            +NV   Y   G     + N++L + KGE + L+ PSG+GK+T + +   L  P  G + 
Sbjct: 3   FENVTKRY---GGGKKAVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEPTSGEIF 59

Query: 69  IANQLCNKLSDDKKSFLRCSKIGFVYQEHRLLMDFSVIENIIFPQIIAGINHKTAYQRAM 128
           I  +   +    +   LR  KIG+V Q+  L    +V ENI     +     +   +RA 
Sbjct: 60  IDGEDIREQDPVE---LR-RKIGYVIQQIGLFPHMTVEENIALVPKLLKWPKEKIRERAD 115

Query: 129 DLLSYMDM--SQYANRRSSDISGGEQQRVAICRAIANKPLIILADEPTGNLDLKTAQQVF 186
           +LL+ + +  +++A+R   ++SGG+QQRV + RA+A  P ++L DEP G LD  T  Q+ 
Sbjct: 116 ELLALVGLDPAEFADRYPHELSGGQQQRVGVARALAADPPLLLMDEPFGALDPITRDQLQ 175

Query: 187 SILKYLVVRSGLAALIATHNHDLASQMDRQITIRDG 222
              K L    G   +  TH+ D A ++  +I I   
Sbjct: 176 EEFKRLQQELGKTIVFVTHDIDEAFRLADRIAIMKN 211


>gnl|CDD|73022 cd03263, ABC_subfamily_A, The ABCA subfamily mediates the transport
           of a variety of lipid compounds.  Mutations of members
           of ABCA subfamily are associated with human genetic
           diseases, such as, familial high-density lipoprotein
           (HDL) deficiency, neonatal surfactant deficiency,
           degenerative retinopathies, and congenital
           keratinization disorders.  The ABCA1 protein is involved
           in disorders of cholesterol transport and high-density
           lipoprotein (HDL) biosynthesis.  The ABCA4 (ABCR)
           protein transports vitamin A derivatives in the outer
           segments of photoreceptor cells, and therefore, performs
           a crucial step in the visual cycle.  The ABCA genes are
           not present in yeast.  However, evolutionary studies of
           ABCA genes indicate that they arose as transporters that
           subsequently duplicated and that certain sets of ABCA
           genes were lost in different eukaryotic lineages..
          Length = 220

 Score =  114 bits (286), Expect = 3e-26
 Identities = 54/213 (25%), Positives = 105/213 (49%), Gaps = 9/213 (4%)

Query: 7   LLLQNVKHSYRQVGKPFPVLENVHLSLKKGEIVALVSPSGTGKSTILHIAGLLEVPDQGN 66
           L ++N+  +Y+      P ++++ L++ KGEI  L+  +G GK+T L +      P  G 
Sbjct: 1   LQIRNLTKTYK--KGTKPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPTSGT 58

Query: 67  VIIANQLCNKLSDDKKSFLRCSKIGFVYQEHRLLMDFSVIENIIFPQIIAGINHKTAYQR 126
             I     N  S           +G+  Q   L  + +V E++ F   + G+      + 
Sbjct: 59  AYI-----NGYSIRTDRKAARQSLGYCPQFDALFDELTVREHLRFYARLKGLPKSEIKEE 113

Query: 127 AMDLLSYMDMSQYANRRSSDISGGEQQRVAICRAIANKPLIILADEPTGNLDLKTAQQVF 186
              LL  + ++  AN+R+  +SGG ++++++  A+   P ++L DEPT  LD  + + ++
Sbjct: 114 VELLLRVLGLTDKANKRARTLSGGMKRKLSLAIALIGGPSVLLLDEPTSGLDPASRRAIW 173

Query: 187 SILKYLVVRSGLAALIATHNHDLASQMDRQITI 219
            ++  L VR G + ++ TH+ D A  +  +I I
Sbjct: 174 DLI--LEVRKGRSIILTTHSMDEAEALCDRIAI 204


>gnl|CDD|72987 cd03228, ABCC_MRP_Like, The MRP (Mutidrug Resistance Protein)-like
           transporters are involved in drug, peptide, and lipid
           export.  They belong to the subfamily C of the
           ATP-binding cassette (ABC) superfamily of transport
           proteins.  The ABCC subfamily contains transporters with
           a diverse functional spectrum that includes ion
           transport, cell surface receptor, and toxin secretion
           activities.  The MRP-like family, simlar to all ABC
           proteins, have a common four-domain core structure
           constituted by two membrane-spanning domains, each
           composed of six transmembrane (TM) helices, and two
           nucleotide-binding domains (NBD).  ABC transporters are
           a subset of nucleotide hydrolases that contain a
           signature motif, Q-loop, and H-loop/switch region, in
           addition to, the Walker A motif/P-loop and Walker B
           motif commonly found in a number of ATP- and GTP-binding
           and hydrolyzing proteins..
          Length = 171

 Score =  112 bits (283), Expect = 6e-26
 Identities = 63/215 (29%), Positives = 94/215 (43%), Gaps = 48/215 (22%)

Query: 9   LQNVKHSYRQVGKPFPVLENVHLSLKKGEIVALVSPSGTGKSTILH-IAGLLEVPDQGNV 67
            +NV  SY   G+P PVL++V L++K GE VA+V PSG+GKST+L  +  L + P  G +
Sbjct: 3   FKNVSFSYP--GRPKPVLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYD-PTSGEI 59

Query: 68  IIANQLCNKLSDDKKSFLRCSKIGFVYQEHRLLMDFSVIENIIFPQIIAGINHKTAYQRA 127
           +I       L  +         I +V Q+   L   ++ ENI                  
Sbjct: 60  LIDGVDLRDLDLES----LRKNIAYVPQDP-FLFSGTIRENI------------------ 96

Query: 128 MDLLSYMDMSQYANRRSSDISGGEQQRVAICRAIANKPLIILADEPTGNLDLKTAQQVFS 187
                              +SGG++QR+AI RA+   P I++ DE T  LD +T   +  
Sbjct: 97  -------------------LSGGQRQRIAIARALLRDPPILILDEATSALDPETEALILE 137

Query: 188 ILKYLVVRSGLAALIATHNHDLASQMDRQITIRDG 222
            L+ L    G   ++  H        DR I + DG
Sbjct: 138 ALRAL--AKGKTVIVIAHRLSTIRDADRIIVLDDG 170


>gnl|CDD|33915 COG4175, ProV, ABC-type proline/glycine betaine transport system,
           ATPase component [Amino acid transport and metabolism].
          Length = 386

 Score =  111 bits (280), Expect = 1e-25
 Identities = 64/201 (31%), Positives = 110/201 (54%), Gaps = 3/201 (1%)

Query: 26  LENVHLSLKKGEIVALVSPSGTGKSTIL-HIAGLLEVPDQGNVIIANQLCNKLSDDKKSF 84
           + +  L +++GEI  ++  SG+GKST++  +  L+E P +G +++  +   KLS  +   
Sbjct: 44  VNDASLDVEEGEIFVIMGLSGSGKSTLVRLLNRLIE-PTRGEILVDGKDIAKLSAAELRE 102

Query: 85  LRCSKIGFVYQEHRLLMDFSVIENIIFPQIIAGINHKTAYQRAMDLLSYMDMSQYANRRS 144
           LR  KI  V+Q   LL   +V+EN+ F   + G+      +RA++ L  + +  YA++  
Sbjct: 103 LRRKKISMVFQSFALLPHRTVLENVAFGLEVQGVPKAEREERALEALELVGLEGYADKYP 162

Query: 145 SDISGGEQQRVAICRAIANKPLIILADEPTGNLDLKTAQQVFSILKYLVVRSGLAALIAT 204
           +++SGG QQRV + RA+AN P I+L DE    LD     ++   L  L  +     +  T
Sbjct: 163 NELSGGMQQRVGLARALANDPDILLMDEAFSALDPLIRTEMQDELLELQAKLKKTIVFIT 222

Query: 205 HNHDLASQMDRQITI-RDGMI 224
           H+ D A ++  +I I +DG I
Sbjct: 223 HDLDEALRIGDRIAIMKDGEI 243


>gnl|CDD|33913 COG4172, COG4172, ABC-type uncharacterized transport system,
           duplicated ATPase component [General function prediction
           only].
          Length = 534

 Score =  111 bits (279), Expect = 1e-25
 Identities = 69/238 (28%), Positives = 124/238 (52%), Gaps = 12/238 (5%)

Query: 1   MDSAEVLLLQNVKHSYRQVGKPFPVLENVHLSLKKGEIVALVSPSGTGKS-TILHIAGLL 59
           M +  +L ++N+  ++ Q G     ++ +   ++ GE +ALV  SG+GKS T L I GLL
Sbjct: 1   MMTMPLLSIRNLSVAFHQEGGTVEAVKGISFDIEAGETLALVGESGSGKSVTALSILGLL 60

Query: 60  EVPD----QGNVIIANQLCNKLSDDKKSFLRCSKIGFVYQEHRLLMD-FSVIENIIFPQI 114
             P      G+++   +     S+ +   +R +KIG ++QE    ++    I   +   +
Sbjct: 61  PSPAAAHPSGSILFDGEDLLAASERQLRGVRGNKIGMIFQEPMTSLNPLHTIGKQLAEVL 120

Query: 115 IA--GINHKTAYQRAMDLLSYMDMSQYANRRSS---DISGGEQQRVAICRAIANKPLIIL 169
               G++   A  RA++LL  + + +   R  +   ++SGG++QRV I  A+AN+P +++
Sbjct: 121 RLHRGLSRAAARARALELLELVGIPEPEKRLDAYPHELSGGQRQRVMIAMALANEPDLLI 180

Query: 170 ADEPTGNLDLKTAQQVFSILKYLVVRSGLAALIATHNHDLASQM-DRQITIRDGMIAD 226
           ADEPT  LD+    Q+  +LK L    G+A L  TH+  +  +  DR   ++ G I +
Sbjct: 181 ADEPTTALDVTVQAQILDLLKELQAELGMAILFITHDLGIVRKFADRVYVMQHGEIVE 238



 Score = 88.7 bits (220), Expect = 1e-18
 Identities = 64/218 (29%), Positives = 110/218 (50%), Gaps = 14/218 (6%)

Query: 16  YRQVGKPFPVLENVHLSLKKGEIVALVSPSGTGKSTI-LHIAGLLEVPDQGNVIIANQLC 74
            R+       ++ + L+L++G+ + LV  SG+GKST+ L +  L+  P QG +    Q  
Sbjct: 293 LRRTVDHLRAVDGISLTLRRGQTLGLVGESGSGKSTLGLALLRLI--PSQGEIRFDGQDI 350

Query: 75  NKLSDDKKSFLRCSKIGFVYQEH------RLLMDFSVIENIIFPQIIAGINHKTAYQRAM 128
           + LS  +   LR  ++  V+Q+       R+ +   + E +   +    ++     QR +
Sbjct: 351 DGLSRKEMRPLR-RRMQVVFQDPYGSLSPRMTVGQIIEEGLRVHE--PKLSAAERDQRVI 407

Query: 129 DLLSYMDMSQYA-NRRSSDISGGEQQRVAICRAIANKPLIILADEPTGNLDLKTAQQVFS 187
           + L  + +     NR   + SGG++QR+AI RA+  KP +IL DEPT  LD     QV  
Sbjct: 408 EALEEVGLDPATRNRYPHEFSGGQRQRIAIARALILKPELILLDEPTSALDRSVQAQVLD 467

Query: 188 ILKYLVVRSGLAALIATHNHDLASQM-DRQITIRDGMI 224
           +L+ L  + GL+ L  +H+  +   +  R I +RDG I
Sbjct: 468 LLRDLQQKHGLSYLFISHDLAVVRALCHRVIVMRDGKI 505


>gnl|CDD|34242 COG4619, COG4619, ABC-type uncharacterized transport system, ATPase
           component [General function prediction only].
          Length = 223

 Score =  111 bits (279), Expect = 1e-25
 Identities = 66/223 (29%), Positives = 111/223 (49%), Gaps = 11/223 (4%)

Query: 7   LLLQNVKHSYRQVGKPFPVLENVHLSLKKGEIVALVSPSGTGKSTILHIAGLLEVPDQGN 66
           +LL+  +  Y        +L N+ LS++ GE +A+  PSG GKST+L I   L  P  G 
Sbjct: 2   MLLELKQVGYLAGDAK--ILNNISLSVRAGEFIAITGPSGCGKSTLLKIVASLISPTSGT 59

Query: 67  VIIANQLCNKLSDDKKSFLRCSKIGFVYQEHRLLMDFSVIENIIFPQIIAGINHKTAYQR 126
           ++   +    +S  K    R  ++ +  Q   L  D +V +N+IFP  I   N +     
Sbjct: 60  LLFEGE---DVSTLKPEAYRQ-QVSYCAQTPALFGD-TVEDNLIFPWQIR--NRRPDRAA 112

Query: 127 AMDLLSYMDMSQYA-NRRSSDISGGEQQRVAICRAIANKPLIILADEPTGNLDLKTAQQV 185
           A+DLL+   +      +  +++SGGE+QR+A+ R +   P I+L DE T  LD    + +
Sbjct: 113 ALDLLARFALPDSILTKNITELSGGEKQRIALIRNLQFMPKILLLDEITSALDESNKRNI 172

Query: 186 FSILKYLVVRSGLAALIATHNHDLASQM-DRQITIRDGMIADL 227
             ++   V    +A L  TH+ D A +  D+ IT++ G   ++
Sbjct: 173 EEMIHRYVREQNVAVLWITHDKDQAIRHADKVITLQPGHAGEM 215


>gnl|CDD|34199 COG4555, NatA, ABC-type Na+ transport system, ATPase component
           [Energy production and conversion / Inorganic ion
           transport and metabolism].
          Length = 245

 Score =  111 bits (278), Expect = 2e-25
 Identities = 62/214 (28%), Positives = 109/214 (50%), Gaps = 7/214 (3%)

Query: 12  VKHSYRQVGKPFPVLENVHLSLKKGEIVALVSPSGTGKSTILHIAGLLEVPDQGNVIIAN 71
           V    +  G     + +V    ++GEI  L+  +G GK+T+L +   L +PD G V I  
Sbjct: 4   VTDLTKSYGSKVQAVRDVSFEAEEGEITGLLGENGAGKTTLLRMIATLLIPDSGKVTIDG 63

Query: 72  QLCNKLSDDKKSFLRCSKIGFVYQEHRLLMDFSVIENIIFPQIIAGINHKTAYQRAMDLL 131
              + + D   SF+R  KIG ++ E  L    +  EN+ +   + G++ K    R  +L 
Sbjct: 64  --VDTVRD--PSFVR-RKIGVLFGERGLYARLTARENLKYFARLNGLSRKEIKARIAELS 118

Query: 132 SYMDMSQYANRRSSDISGGEQQRVAICRAIANKPLIILADEPTGNLDLKTAQQVFSILKY 191
             + + +Y +RR  + S G +Q+VAI RA+ + P I++ DEPT  LD++T ++    +K 
Sbjct: 119 KRLQLLEYLDRRVGEFSTGMKQKVAIARALVHDPSILVLDEPTSGLDIRTRRKFHDFIKQ 178

Query: 192 LVVRSGLAALIATHN-HDLASQMDRQITIRDGMI 224
           L    G A + ++H   ++ +  DR I +  G +
Sbjct: 179 L-KNEGRAVIFSSHIMQEVEALCDRVIVLHKGEV 211


>gnl|CDD|30760 COG0411, LivG, ABC-type branched-chain amino acid transport
           systems, ATPase component [Amino acid transport and
           metabolism].
          Length = 250

 Score =  109 bits (275), Expect = 5e-25
 Identities = 60/227 (26%), Positives = 112/227 (49%), Gaps = 20/227 (8%)

Query: 17  RQVGKPF---PVLENVHLSLKKGEIVALVSPSGTGKSTILHIAGLLEVPDQGNVIIANQL 73
           R + K F     + +V L ++ GEIV L+ P+G GK+T+ ++      P  G VI   + 
Sbjct: 8   RGLSKRFGGLTAVNDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFYKPSSGTVIFRGRD 67

Query: 74  CNKLSDDKKSFLRCSKIGFVYQEHRLLMDFSVIENIIFPQIIAGI------------NHK 121
              L   + + L    I   +Q  RL    +V+EN+                       +
Sbjct: 68  ITGLPPHRIARL---GIARTFQITRLFPGLTVLENVAVGAHARLGLSGLLGRPRARKEER 124

Query: 122 TAYQRAMDLLSYMDMSQYANRRSSDISGGEQQRVAICRAIANKPLIILADEPTGNLDLKT 181
            A +RA +LL ++ + + A+R + ++S G+Q+R+ I RA+A +P ++L DEP   L+ + 
Sbjct: 125 EARERARELLEFVGLGELADRPAGNLSYGQQRRLEIARALATQPKLLLLDEPAAGLNPEE 184

Query: 182 AQQVFSILKYLVVRSGLAALIATHNHDLASQM-DRQITIRDG-MIAD 226
            +++  +++ L  R G+  L+  H+  L   + DR + +  G +IA+
Sbjct: 185 TEELAELIRELRDRGGVTILLIEHDMKLVMGLADRIVVLNYGEVIAE 231


>gnl|CDD|73056 cd03297, ABC_ModC_molybdenum_transporter, ModC is an ABC-type
           transporter and the ATPase component of a molybdate
           transport system that also includes the periplasmic
           binding protein ModA and the membrane protein ModB. ABC
           transporters are a large family of proteins involved in
           the transport of a wide variety of different compounds,
           like sugars, ions, peptides and more complex organic
           molecules. The nucleotide binding domain shows the
           highest similarity between all members of the family.
           ABC transporters are a subset of nucleotide hydrolases
           that contain a signature motif, Q-loop, and
           H-loop/switch region, in addition to, the Walker A
           motif/P-loop and Walker B motif commonly found in a
           number of ATP- and GTP-binding and hydrolyzing
           proteins..
          Length = 214

 Score =  109 bits (274), Expect = 6e-25
 Identities = 58/194 (29%), Positives = 94/194 (48%), Gaps = 7/194 (3%)

Query: 35  KGEIVALVSPSGTGKSTILHIAGLLEVPDQGNVIIANQLCNKLSDDKKSFL--RCSKIGF 92
             E+  +   SG GKST+L     LE PD G +++   +       KK  L  +  KIG 
Sbjct: 22  NEEVTGIFGASGAGKSTLLRCIAGLEKPDGGTIVLNGTVLF--DSRKKINLPPQQRKIGL 79

Query: 93  VYQEHRLLMDFSVIENIIFPQIIAGINHKTAYQRAMDLLSYMDMSQYANRRSSDISGGEQ 152
           V+Q++ L    +V EN+ F   +    ++       +LL  + +    NR  + +SGGE+
Sbjct: 80  VFQQYALFPHLNVRENLAF--GLKRKRNREDRISVDELLDLLGLDHLLNRYPAQLSGGEK 137

Query: 153 QRVAICRAIANKPLIILADEPTGNLDLKTAQQVFSILKYLVVRSGLAALIATHNHDLASQ 212
           QRVA+ RA+A +P ++L DEP   LD     Q+   LK +     +  +  TH+   A  
Sbjct: 138 QRVALARALAAQPELLLLDEPFSALDRALRLQLLPELKQIKKNLNIPVIFVTHDLSEAEY 197

Query: 213 M-DRQITIRDGMIA 225
           + DR + + DG + 
Sbjct: 198 LADRIVVMEDGRLQ 211


>gnl|CDD|72989 cd03230, ABC_DR_subfamily_A, This family of ATP-binding proteins
           belongs to a multisubunit transporter involved in drug
           resistance (BcrA and DrrA), nodulation, lipid transport,
           and lantibiotic immunity.  In bacteria and archaea,
           these transporters usually include an ATP-binding
           protein and one or two integral membrane proteins.
           Eukaryote systems of the ABCA subfamily display ABC
           domains that are quite similar to this family.  The
           ATP-binding domain shows the highest similarity between
           all members of the ABC transporter family.  ABC
           transporters are a subset of nucleotide hydrolases that
           contain a signature motif, Q-loop, and H-loop/switch
           region, in addition to, the Walker A motif/P-loop and
           Walker B motif commonly found in a number of ATP- and
           GTP-binding and hydrolyzing proteins..
          Length = 173

 Score =  109 bits (275), Expect = 6e-25
 Identities = 54/220 (24%), Positives = 107/220 (48%), Gaps = 49/220 (22%)

Query: 7   LLLQNVKHSYRQVGKPFPVLENVHLSLKKGEIVALVSPSGTGKSTIL-HIAGLLEVPDQG 65
           + ++N+   Y         L+++ L+++KGEI  L+ P+G GK+T++  I GLL+ PD G
Sbjct: 1   IEVRNLSKRY----GKKTALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLK-PDSG 55

Query: 66  NVIIANQLCNKLSDDKKSFLRCSKIGFVYQEHRLLMDFSVIENIIFPQIIAGINHKTAYQ 125
            + +  +   K  ++ K      +IG++ +E  L  + +V EN+                
Sbjct: 56  EIKVLGKDIKKEPEEVKR-----RIGYLPEEPSLYENLTVRENLKL-------------- 96

Query: 126 RAMDLLSYMDMSQYANRRSSDISGGEQQRVAICRAIANKPLIILADEPTGNLDLKTAQQV 185
                                 SGG +QR+A+ +A+ + P +++ DEPT  LD ++ ++ 
Sbjct: 97  ----------------------SGGMKQRLALAQALLHDPELLILDEPTSGLDPESRREF 134

Query: 186 FSILKYLVVRSGLAALIATHNHDLASQM-DRQITIRDGMI 224
           + +L+ L  + G   L+++H  + A ++ DR   + +G I
Sbjct: 135 WELLREL-KKEGKTILLSSHILEEAERLCDRVAILNNGRI 173


>gnl|CDD|31332 COG1137, YhbG, ABC-type (unclassified) transport system, ATPase
           component [General function prediction only].
          Length = 243

 Score =  109 bits (273), Expect = 8e-25
 Identities = 68/222 (30%), Positives = 112/222 (50%), Gaps = 11/222 (4%)

Query: 6   VLLLQNVKHSYRQVGKPFPVLENVHLSLKKGEIVALVSPSGTGKSTILHIAGLLEVPDQG 65
            L+ +N+  SY++      V+ +V L +  GEIV L+ P+G GK+T  ++   L  PD G
Sbjct: 4   TLVAENLAKSYKKR----KVVNDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVGLVRPDSG 59

Query: 66  NVIIANQLCNKLSDDKKSFLRCSKIGFVYQEHRLLMDFSVIENIIFPQIIAGINHKTAYQ 125
            +++ ++   KL   K++ L    IG++ QE  +    +V +NI+    I   + K A +
Sbjct: 60  KILLDDEDITKLPMHKRARL---GIGYLPQEASIFRKLTVEDNIMAVLEIREKDLKKAER 116

Query: 126 --RAMDLLSYMDMSQYANRRSSDISGGEQQRVAICRAIANKPLIILADEPTGNLDLKTAQ 183
                 LL    ++   + ++  +SGGE++RV I RA+A  P  IL DEP   +D     
Sbjct: 117 KEELDALLEEFHITHLRDSKAYSLSGGERRRVEIARALAANPKFILLDEPFAGVDPIAVI 176

Query: 184 QVFSILKYLVVRSGLAALIATHN-HDLASQMDRQITIRDGMI 224
            +  I+K+L  R G+  LI  HN  +     DR   I DG +
Sbjct: 177 DIQRIIKHLKDR-GIGVLITDHNVRETLDICDRAYIISDGKV 217


>gnl|CDD|30759 COG0410, LivF, ABC-type branched-chain amino acid transport
           systems, ATPase component [Amino acid transport and
           metabolism].
          Length = 237

 Score =  108 bits (272), Expect = 1e-24
 Identities = 65/226 (28%), Positives = 115/226 (50%), Gaps = 14/226 (6%)

Query: 4   AEVLLLQNVKHSYRQVGKPFPVLENVHLSLKKGEIVALVSPSGTGKSTILH-IAGLLEVP 62
           A +L ++N+   Y         L  V L +++GEIVAL+  +G GK+T+L  I GL+  P
Sbjct: 1   APMLEVENLSAGY----GKIQALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVR-P 55

Query: 63  DQGNVIIANQLCNKLSDDKKSFLRCSKIGFVYQEHRLLMDFSVIENIIFPQIIAGINHKT 122
             G +I   +    L   +++ L    I +V +  R+    +V EN++          K 
Sbjct: 56  RSGRIIFDGEDITGLPPHERARLG---IAYVPEGRRIFPRLTVEENLLLG--AYARRDKE 110

Query: 123 AYQRAMDLLSYM--DMSQYANRRSSDISGGEQQRVAICRAIANKPLIILADEPTGNLDLK 180
           A +R ++ +  +   + +  N+R+  +SGGEQQ +AI RA+ ++P ++L DEP+  L  K
Sbjct: 111 AQERDLEEVYELFPRLKERRNQRAGTLSGGEQQMLAIARALMSRPKLLLLDEPSEGLAPK 170

Query: 181 TAQQVFSILKYLVVRSGLAALIATHNHDLASQM-DRQITIRDGMIA 225
             +++F  +K L    G+  L+   N   A ++ DR   + +G I 
Sbjct: 171 IVEEIFEAIKELRKEGGMTILLVEQNARFALEIADRGYVLENGRIV 216


>gnl|CDD|73024 cd03265, ABC_DrrA, DrrA is the ATP-binding protein component of a
           bacterial exporter complex that confers resistance to
           the antibiotics daunorubicin and doxorubicin.  In
           addition to DrrA, the complex includes an integral
           membrane protein called DrrB.  DrrA belongs to the ABC
           family of transporters and shares sequence and
           functional similarities with a protein found in cancer
           cells called  P-glycoprotein.  ABC transporters are a
           large family of proteins involved in the transport of a
           wide variety of different compounds, like sugars, ions,
           peptides, and more complex organic molecules.  The
           nucleotide binding domain shows the highest similarity
           between all members of the family.  ABC transporters are
           a subset of nucleotide hydrolases that contain a
           signature motif, Q-loop, and H-loop/switch region in
           addition to the Walker A motif/P-loop and Walker B motif
           commonly found in a number of ATP- and GTP-binding and
           hydrolyzing proteins..
          Length = 220

 Score =  106 bits (266), Expect = 5e-24
 Identities = 54/204 (26%), Positives = 100/204 (49%), Gaps = 6/204 (2%)

Query: 23  FPVLENVHLSLKKGEIVALVSPSGTGKSTILHIAGLLEVPDQGNVIIANQLCNKLSDDKK 82
           F  +  V   +++GEI  L+ P+G GK+T + +   L  P  G   +A     +   + +
Sbjct: 13  FEAVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPTSGRATVAGHDVVREPREVR 72

Query: 83  SFLRCSKIGFVYQEHRLLMDFSVIENIIFPQIIAGINHKTAYQRAMDLLSYMDMSQYANR 142
                 +IG V+Q+  +  + +  EN+     + G+      +R  +LL ++ + + A+R
Sbjct: 73  R-----RIGIVFQDLSVDDELTGWENLYIHARLYGVPGAERRERIDELLDFVGLLEAADR 127

Query: 143 RSSDISGGEQQRVAICRAIANKPLIILADEPTGNLDLKTAQQVFSILKYLVVRSGLAALI 202
                SGG ++R+ I R++ ++P ++  DEPT  LD +T   V+  ++ L    G+  L+
Sbjct: 128 LVKTYSGGMRRRLEIARSLVHRPEVLFLDEPTIGLDPQTRAHVWEYIEKLKEEFGMTILL 187

Query: 203 ATHNHDLASQM-DRQITIRDGMIA 225
            TH  + A Q+ DR   I  G I 
Sbjct: 188 TTHYMEEAEQLCDRVAIIDHGRII 211


>gnl|CDD|32455 COG2274, SunT, ABC-type bacteriocin/lantibiotic exporters, contain
           an N-terminal double-glycine peptidase domain [Defense
           mechanisms].
          Length = 709

 Score =  106 bits (266), Expect = 6e-24
 Identities = 68/224 (30%), Positives = 105/224 (46%), Gaps = 18/224 (8%)

Query: 9   LQNVKHSYRQVGKPFPVLENVHLSLKKGEIVALVSPSGTGKSTILHIAGLLEVPDQGNVI 68
            +NV   Y     P  VLE++ L +  GE VA+V  SG+GKST+L +   L  P QG ++
Sbjct: 474 FENVSFRYGPDDPP--VLEDLSLEIPPGEKVAIVGRSGSGKSTLLKLLLGLYKPQQGRIL 531

Query: 69  IANQLCNKLSDDKKSFLRCSKIGFVYQEHRLLMDFSVIENIIF-------PQIIAGINHK 121
           +       L+D   + LR  ++G+V Q+   L   S+ ENI          +II      
Sbjct: 532 LDGV---DLNDIDLASLR-RQVGYVLQDP-FLFSGSIRENIALGNPEATDEEIIEAAQLA 586

Query: 122 TAYQRAMDLLSYMDMSQYANRRSSDISGGEQQRVAICRAIANKPLIILADEPTGNLDLKT 181
            A++   +L   M          +++SGG++QR+A+ RA+ +KP I+L DE T  LD +T
Sbjct: 587 GAHEFIENL--PMGYDTPVGEGGANLSGGQRQRLALARALLSKPKILLLDEATSALDPET 644

Query: 182 AQQVFSILKYLVVRSGLAALIATHNHDLASQMDRQITIRDGMIA 225
              +   L  +    G   +I  H        DR I +  G I 
Sbjct: 645 EAIILQNLLQI--LQGRTVIIIAHRLSTIRSADRIIVLDQGKIV 686


>gnl|CDD|72983 cd03224, ABC_TM1139_LivF_branched, LivF (TM1139) is part of the
           LIV-I bacterial ABC-type two-component transport system
           that imports neutral, branched-chain amino acids.  The
           E. coli branched-chain amino acid transporter comprises
           a heterodimer of ABC transporters (LivF and LivG), a
           heterodimer of six-helix TM domains (LivM and LivH), and
           one of two alternative soluble periplasmic substrate
           binding proteins (LivK or LivJ).  ABC transporters are a
           large family of proteins involved in the transport of a
           wide variety of different compounds, like sugars, ions,
           peptides, and more complex organic molecules..
          Length = 222

 Score =  105 bits (264), Expect = 9e-24
 Identities = 58/223 (26%), Positives = 112/223 (50%), Gaps = 16/223 (7%)

Query: 7   LLLQNVKHSYRQVGKPFPVLENVHLSLKKGEIVALVSPSGTGKSTILH-IAGLLEVPDQG 65
           L ++N+   Y +      +L  V L++ +GEIVAL+  +G GK+T+L  I GLL  P  G
Sbjct: 1   LEVENLNAGYGK----SQILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLP-PRSG 55

Query: 66  NVIIANQLCNKLSDDKKSFLRCSKIGFVYQEHRLLMDFSVIENIIFPQIIAGINHKTAYQ 125
           ++    +    L   +++      IG+V +  R+  + +V EN+    + A    +   +
Sbjct: 56  SIRFDGRDITGLPPHERARA---GIGYVPEGRRIFPELTVEENL---LLGAYARRRAKRK 109

Query: 126 RAMDLLSYM--DMSQYANRRSSDISGGEQQRVAICRAIANKPLIILADEPTGNLDLKTAQ 183
             ++ +  +   + +   + +  +SGGEQQ +AI RA+ ++P ++L DEP+  L  K  +
Sbjct: 110 ARLERVYELFPRLKERRKQLAGTLSGGEQQMLAIARALMSRPKLLLLDEPSEGLAPKIVE 169

Query: 184 QVFSILKYLVVRSGLAALIATHNHDLASQM-DRQITIRDGMIA 225
           ++F  ++ L    G+  L+   N   A ++ DR   +  G + 
Sbjct: 170 EIFEAIREL-RDEGVTILLVEQNARFALEIADRAYVLERGRVV 211


>gnl|CDD|72985 cd03226, ABC_cobalt_CbiO_domain2, Domain II of the ABC component of
           a cobalt transport family found in bacteria, archaea,
           and eukaryota.  The transition metal cobalt is an
           essential component of many enzymes and must be
           transported into cells in appropriate amounts when
           needed.  The CbiMNQO family ABC transport system is
           involved in cobalt transport in association with the
           cobalamin (vitamin B12) biosynthetic pathways.  Most
           cobalt (Cbi) transport systems possess a separate CbiN
           component, the cobalt-binding periplasmic protein, and
           they are encoded by the conserved gene cluster cbiMNQO. 
           Both the CbiM and CbiQ proteins are integral cytoplasmic
           membrane proteins, and the CbiO protein has the linker
           peptide and the Walker A and B motifs commonly found in
           the ATPase components of the ABC-type transport
           systems..
          Length = 205

 Score =  103 bits (258), Expect = 5e-23
 Identities = 56/218 (25%), Positives = 116/218 (53%), Gaps = 17/218 (7%)

Query: 9   LQNVKHSYRQVGKPFPVLENVHLSLKKGEIVALVSPSGTGKSTILHIAGLLEVPDQGNVI 68
           ++N+  SY++  +   +L+++ L L  GEI+AL   +G GK+T+  I   L     G+++
Sbjct: 2   IENISFSYKKGTE---ILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKESSGSIL 58

Query: 69  IANQLCNKLSDDKKSFLRCSKIGFVYQEHRLLMDFSVIENIIFPQIIAGINHKTA-YQRA 127
           +            K+  R   IG+V Q+    +D+ +  + +  +++ G+    A  ++A
Sbjct: 59  LNG-------KPIKAKERRKSIGYVMQD----VDYQLFTDSVREELLLGLKELDAGNEQA 107

Query: 128 MDLLSYMDMSQYANRRSSDISGGEQQRVAICRAIANKPLIILADEPTGNLDLKTAQQVFS 187
             +L  +D+     R    +SGG++QR+AI  A+ +   +++ DEPT  LD K  ++V  
Sbjct: 108 ETVLKDLDLYALKERHPLSLSGGQKQRLAIAAALLSGKDLLIFDEPTSGLDYKNMERVGE 167

Query: 188 ILKYLVVRSGLAALIATHNHDLASQM-DRQITIRDGMI 224
           +++ L    G A ++ TH+++  +++ DR + + +G I
Sbjct: 168 LIREL-AAQGKAVIVITHDYEFLAKVCDRVLLLANGAI 204


>gnl|CDD|72978 cd03219, ABC_Mj1267_LivG_branched, The Mj1267/LivG ABC transporter
           subfamily is involved in the transport of the
           hydrophobic amino acids leucine, isoleucine and valine. 
           MJ1267 is a branched-chain amino acid transporter with
           29% similarity to both the LivF and LivG components of
           the E. coli  branched-chain amino acid transporter.
           MJ1267 contains an insertion from residues 114 to 123
           characteristic of LivG (Leucine-Isoleucine-Valine)
           homologs.  The branched-chain amino acid transporter
           from E. coli comprises a heterodimer of ABCs (LivF and
           LivG), a heterodimer of six-helix TM domains (LivM and
           LivH), and one of two alternative soluble periplasmic
           substrate binding proteins (LivK or LivJ)..
          Length = 236

 Score =  102 bits (257), Expect = 7e-23
 Identities = 59/217 (27%), Positives = 113/217 (52%), Gaps = 19/217 (8%)

Query: 17  RQVGKPF---PVLENVHLSLKKGEIVALVSPSGTGKSTILH-IAGLLEVPDQGNVIIANQ 72
           R + K F     L++V  S++ GEI  L+ P+G GK+T+ + I+G L  P  G+V+   +
Sbjct: 4   RGLTKRFGGLVALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLR-PTSGSVLFDGE 62

Query: 73  LCNKLSDDKKSFLRCSKIGFVYQEHRLLMDFSVIENII----------FPQIIAGINHKT 122
               L   + + L    IG  +Q  RL  + +V+EN++               A    + 
Sbjct: 63  DITGLPPHEIARL---GIGRTFQIPRLFPELTVLENVMVAAQARTGSGLLLARARREERE 119

Query: 123 AYQRAMDLLSYMDMSQYANRRSSDISGGEQQRVAICRAIANKPLIILADEPTGNLDLKTA 182
           A +RA +LL  + ++  A+R + ++S G+Q+R+ I RA+A  P ++L DEP   L+ +  
Sbjct: 120 ARERAEELLERVGLADLADRPAGELSYGQQRRLEIARALATDPKLLLLDEPAAGLNPEET 179

Query: 183 QQVFSILKYLVVRSGLAALIATHNHDLASQMDRQITI 219
           +++  +++ L    G+  L+  H+ D+   +  ++T+
Sbjct: 180 EELAELIREL-RERGITVLLVEHDMDVVMSLADRVTV 215


>gnl|CDD|33636 COG3845, COG3845, ABC-type uncharacterized transport systems,
           ATPase components [General function prediction only].
          Length = 501

 Score =  101 bits (253), Expect = 2e-22
 Identities = 66/213 (30%), Positives = 104/213 (48%), Gaps = 11/213 (5%)

Query: 17  RQVGKPFP---VLENVHLSLKKGEIVALVSPSGTGKSTILHIAGLLEVPDQGNVIIANQL 73
           R + K FP     ++V LS+KKGEI AL+  +G GKST++ I   L  PD G + +  + 
Sbjct: 8   RGITKRFPGVVANDDVSLSVKKGEIHALLGENGAGKSTLMKILFGLYQPDSGEIRVDGK- 66

Query: 74  CNKLSDDKKSFLRCSKIGFVYQEHRLLMDFSVIENIIF---PQIIAGINHKTAYQRAMDL 130
             ++            IG V+Q   L+   +V ENII    P     I+ + A  R  +L
Sbjct: 67  --EVRIKSPRDAIRLGIGMVHQHFMLVPTLTVAENIILGLEPSKGGLIDRRQARARIKEL 124

Query: 131 LSYMDMSQYANRRSSDISGGEQQRVAICRAIANKPLIILADEPTGNLDLKTAQQVFSILK 190
                +    + + +D+S GEQQRV I +A+     +++ DEPT  L  + A ++F IL+
Sbjct: 125 SERYGLPVDPDAKVADLSVGEQQRVEILKALYRGARLLILDEPTAVLTPQEADELFEILR 184

Query: 191 YLVVRSGLAALIATHN-HDLASQMDRQITIRDG 222
            L    G   +  TH   ++ +  DR   +R G
Sbjct: 185 RL-AAEGKTIIFITHKLKEVMAIADRVTVLRRG 216



 Score = 76.7 bits (189), Expect = 5e-15
 Identities = 50/228 (21%), Positives = 101/228 (44%), Gaps = 17/228 (7%)

Query: 12  VKHSYRQVGKPFPVLENVHLSLKKGEIVALVSPSGTGKSTILHIAGLLEVPDQGNVIIAN 71
           V+    +  +    +++V   ++ GEIV +   +G G+S ++     L  P  G +++  
Sbjct: 260 VEDLSVKDRRGVTAVKDVSFEVRAGEIVGIAGVAGNGQSELVEAISGLRKPASGRILLNG 319

Query: 72  QLCNKLSDDKKSFLRCSKIGFVYQE---HRLLMDFSVIENIIFPQIIAG-------INHK 121
              + L        R   + +V ++   H L++D S+ EN++  +           ++ +
Sbjct: 320 --KDVLGRLSPRERRRLGLAYVPEDRHGHGLVLDLSLAENLVLGRHDKKPFSRGGFLDRR 377

Query: 122 TAYQRAMDLLSYMDM---SQYANRRSSDISGGEQQRVAICRAIANKPLIILADEPTGNLD 178
              + A +L+   D+   S  A  RS  +SGG QQ++ + R +A +P +++A +PT  LD
Sbjct: 378 AIRKFARELIEEFDVRAPSPDAPARS--LSGGNQQKLILARELARRPDLLIAAQPTRGLD 435

Query: 179 LKTAQQVFSILKYLVVRSGLAALIATHNHDLASQMDRQITIRDGMIAD 226
           +   + +   L  L        LI+    ++    DR   I +G I  
Sbjct: 436 VGAIEFIHERLLELRDAGKAVLLISEDLDEILELSDRIAVIYEGRIVG 483


>gnl|CDD|35278 KOG0055, KOG0055, KOG0055, Multidrug/pheromone exporter, ABC
           superfamily [Secondary metabolites biosynthesis,
           transport and catabolism].
          Length = 1228

 Score =  101 bits (253), Expect = 2e-22
 Identities = 66/225 (29%), Positives = 103/225 (45%), Gaps = 21/225 (9%)

Query: 9   LQNVKHSYRQVGKP-FPVLENVHLSLKKGEIVALVSPSGTGKSTILH-IAGLLEVPDQGN 66
            +NV  SY    +P   +L+ V L +  G+ VALV PSG+GKST++  +A   + P  G 
Sbjct: 353 FRNVCFSY--PSRPDVKILKGVSLKIPSGQTVALVGPSGSGKSTLIQLLARFYD-PTSGE 409

Query: 67  VIIANQLCNKLSDDKKSFLRCSKIGFVYQEHRLLMDFSVIENIIF-------PQIIAGIN 119
           V+I       + +    +LR S+IG V QE  +L   ++ ENI +        +I     
Sbjct: 410 VLIDG---EDIRNLNLKWLR-SQIGLVSQE-PVLFATTIRENIRYGKPDATREEIEEAAK 464

Query: 120 HKTAYQRAMDLLSYMDMSQYANRRSSDISGGEQQRVAICRAIANKPLIILADEPTGNLDL 179
              A+   + L    D       R   +SGG++QR+AI RA+   P I+L DE T  LD 
Sbjct: 465 AANAHDFILKLPDGYDT--LVGERGVQLSGGQKQRIAIARALVRNPKILLLDEATSALDA 522

Query: 180 KTAQQVFSILKYLVVRSGLAALIATHNHDLASQMDRQITIRDGMI 224
           ++ + V   L       G   ++  H        D+   + +G I
Sbjct: 523 ESERVVQEALDKA--SKGRTTIVVAHRLSTIRNADKIAVMEEGKI 565



 Score = 94.9 bits (236), Expect = 2e-20
 Identities = 70/229 (30%), Positives = 106/229 (46%), Gaps = 21/229 (9%)

Query: 7    LLLQNVKHSYRQVGKP-FPVLENVHLSLKKGEIVALVSPSGTGKSTILHIAGLLEV---P 62
            +  +NV  +Y    +P  PVL N+ LS++ G+ VALV PSG+GKST++    LLE    P
Sbjct: 988  IEFRNVSFAYPT--RPDVPVLNNLSLSIRAGQTVALVGPSGSGKSTVI---SLLERFYDP 1042

Query: 63   DQGNVIIANQLCNKLSDDKKSFLRCSKIGFVYQEHRLLMDFSVIENIIFPQI---IAGIN 119
            D G V I       L+     +LR  +IG V QE  L  + ++ ENI +         I 
Sbjct: 1043 DAGKVKIDGVDIKDLN---LKWLR-KQIGLVSQEPVLF-NGTIRENIAYGSEEVSEEEII 1097

Query: 120  HKTAYQRAMDLLSYMD--MSQYANRRSSDISGGEQQRVAICRAIANKPLIILADEPTGNL 177
                   A + +S +          R   +SGG++QR+AI RAI   P I+L DE T  L
Sbjct: 1098 EAAKLANAHNFISSLPQGYDTRVGERGVQLSGGQKQRIAIARAILRNPKILLLDEATSAL 1157

Query: 178  DLKTAQQVFSILKYLVVRSGLAALIATHNHDLASQMDRQITIRDGMIAD 226
            D ++ + V   L       G   ++  H        D    +++G + +
Sbjct: 1158 DSESERVVQEALDR--AMEGRTTIVIAHRLSTIQNADVIAVLKNGKVVE 1204


>gnl|CDD|34593 COG4988, CydD, ABC-type transport system involved in cytochrome bd
           biosynthesis, ATPase and permease components [Energy
           production and conversion / Posttranslational
           modification, protein turnover, chaperones].
          Length = 559

 Score =  100 bits (251), Expect = 3e-22
 Identities = 59/207 (28%), Positives = 104/207 (50%), Gaps = 13/207 (6%)

Query: 24  PVLENVHLSLKKGEIVALVSPSGTGKSTILH-IAGLLEVPDQGNVIIANQLCNKLSDDKK 82
           P L +++L++K G++ ALV  SG GKST+L+ + G L  P QG + +       LS +  
Sbjct: 335 PALSDLNLTIKAGQLTALVGASGAGKSTLLNLLLGFLA-PTQGEIRVNGIDLRDLSPEAW 393

Query: 83  SFLRCSKIGFVYQEHRLLMDFSVIENIIFPQIIAGINHKTAYQRAMDLLSYMDMSQYAN- 141
                 +I +V Q +  L   ++ ENI+  +  A      A      LL ++      + 
Sbjct: 394 R----KQISWVSQ-NPYLFAGTIRENILLARPDASDEEIIAALDQAGLLEFVPKPDGLDT 448

Query: 142 ---RRSSDISGGEQQRVAICRAIANKPLIILADEPTGNLDLKTAQQVFSILKYLVVRSGL 198
                 + +SGG+ QR+A+ RA+ +   ++L DEPT +LD +T Q +   L+ L  +  +
Sbjct: 449 VIGEGGAGLSGGQAQRLALARALLSPASLLLLDEPTAHLDAETEQIILQALQELAKQKTV 508

Query: 199 AALIATHNHDLASQMDRQITIRDGMIA 225
             L+ TH  + A+  DR + + +G + 
Sbjct: 509 --LVITHRLEDAADADRIVVLDNGRLV 533


>gnl|CDD|73028 cd03269, ABC_putative_ATPase, This subfamily is involved in drug
           resistance, nodulation, lipid transport, and bacteriocin
           and lantibiotic immunity.  In eubacteria and archaea,
           the typical organization consists of one ABC and one or
           two IMs.  Eukaryote systems of the ABCA subfamily
           display ABC domains strongly similar to this family.
           ABC transporters are a large family of proteins involved
           in the transport of a wide variety of different
           compounds, like sugars, ions, peptides and more complex
           organic molecules.  The nucleotide binding domain shows
           the highest similarity between all members of the
           family.  ABC transporters are a subset of nucleotide
           hydrolases that contain a signature motif, Q-loop, and
           H-loop/switch region in addition to the Walker A
           motif/P-loop and Walker B motif commonly found in a
           number of ATP- and GTP-binding and hydrolyzing
           proteins..
          Length = 210

 Score = 99.5 bits (248), Expect = 7e-22
 Identities = 56/217 (25%), Positives = 115/217 (52%), Gaps = 14/217 (6%)

Query: 7   LLLQNVKHSYRQVGKPFPVLENVHLSLKKGEIVALVSPSGTGKSTILHIAGLLEVPDQGN 66
           L ++NV   + +V      L+++  S++KGEI  L+ P+G GK+T + +   + +PD G 
Sbjct: 1   LEVENVTKRFGRV----TALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILPDSGE 56

Query: 67  VIIANQLCNKLSDDKKSFLRCSKIGFVYQEHRLLMDFSVIENIIFPQIIAGINHKTAYQR 126
           V+   +               ++IG++ +E  L     VI+ +++   + G+  + A +R
Sbjct: 57  VLFDGK--------PLDIAARNRIGYLPEERGLYPKMKVIDQLVYLAQLKGLKKEEARRR 108

Query: 127 AMDLLSYMDMSQYANRRSSDISGGEQQRVAICRAIANKPLIILADEPTGNLDLKTAQQVF 186
             + L  +++S+YAN+R  ++S G QQ+V    A+ + P +++ DEP   LD    + + 
Sbjct: 109 IDEWLERLELSEYANKRVEELSKGNQQKVQFIAAVIHDPELLILDEPFSGLDPVNVELLK 168

Query: 187 SILKYLVVRSGLAALIATHNHDLASQM-DRQITIRDG 222
            +++ L  R+G   +++TH  +L  ++ DR + +  G
Sbjct: 169 DVIREL-ARAGKTVILSTHQMELVEELCDRVLLLNKG 204


>gnl|CDD|34390 COG4778, PhnL, ABC-type phosphonate transport system, ATPase
           component [Inorganic ion transport and metabolism].
          Length = 235

 Score = 98.4 bits (245), Expect = 1e-21
 Identities = 67/223 (30%), Positives = 113/223 (50%), Gaps = 12/223 (5%)

Query: 7   LLLQNVKHSY---RQVGKPFPVLENVHLSLKKGEIVALVSPSGTGKSTILHIAGLLEVPD 63
           L + NV  ++   +Q G   PVL NV LS+  GE V L  PSG+GKST+L       +PD
Sbjct: 5   LNVSNVSKTFTLHQQGGVRLPVLRNVSLSVNAGECVVLHGPSGSGKSTLLRSLYANYLPD 64

Query: 64  QGNVIIANQ-----LCNKLSDDKKSFLRCSKIGFVYQEHRLLMDFSVIENIIFPQIIAGI 118
           +G +++ ++     L       +   +R + IG+V Q  R++   S ++ +  P +  G+
Sbjct: 65  EGQILVRHEGEWVDLVT-AEPREVLEVRRTTIGYVSQFLRVIPRVSALDVVAEPLLARGV 123

Query: 119 NHKTAYQRAMDLLSYMDMSQYANRRS-SDISGGEQQRVAICRAIANKPLIILADEPTGNL 177
             + A  +A DLL+ +++ +     + +  SGGEQQRV I R       I+L DEPT +L
Sbjct: 124 PREVARAKAADLLTRLNLPERLWSLAPATFSGGEQQRVNIARGFIVDYPILLLDEPTASL 183

Query: 178 DLKTAQQVFSILKYLVVRSGLAALIATHNHDLASQM-DRQITI 219
           D      V  +++    R G A +   H+ ++   + DR + +
Sbjct: 184 DATNRAVVVELIREAKAR-GAALVGIFHDEEVREAVADRLLDV 225


>gnl|CDD|72971 cd00267, ABC_ATPase, ABC (ATP-binding cassette) transporter
           nucleotide-binding domain; ABC transporters are a large
           family of proteins involved in the transport of a wide
           variety of different compounds, like sugars, ions,
           peptides, and more complex organic molecules.  The
           nucleotide-binding domain shows the highest similarity
           between all members of the family.  ABC transporters are
           a subset of nucleotide hydrolases that contain a
           signature motif, Q-loop, and H-loop/switch region, in
           addition to, the Walker A motif/P-loop and Walker B
           motif commonly found in a number of ATP- and GTP-binding
           and hydrolyzing proteins..
          Length = 157

 Score = 96.9 bits (241), Expect = 4e-21
 Identities = 62/215 (28%), Positives = 95/215 (44%), Gaps = 61/215 (28%)

Query: 9   LQNVKHSYRQVGKPFPVLENVHLSLKKGEIVALVSPSGTGKSTILHIAGLLEVPDQGNVI 68
           ++N+   Y         L+NV L+LK GEIVALV P+G+GKST+L     L  P  G ++
Sbjct: 2   IENLSFRYGGR----TALDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLLKPTSGEIL 57

Query: 69  IANQLCNKLSDDKKSFLRCSKIGFVYQEHRLLMDFSVIENIIFPQIIAGINHKTAYQRAM 128
           I  +    ++      LR  +IG+V Q                                 
Sbjct: 58  IDGK---DIAKLPLEELR-RRIGYVPQ--------------------------------- 80

Query: 129 DLLSYMDMSQYANRRSSDISGGEQQRVAICRAIANKPLIILADEPTGNLDLKTAQQVFSI 188
                             +SGG++QRVA+ RA+   P ++L DEPT  LD  + +++  +
Sbjct: 81  ------------------LSGGQRQRVALARALLLNPDLLLLDEPTSGLDPASRERLLEL 122

Query: 189 LKYLVVRSGLAALIATHNHDLASQM-DRQITIRDG 222
           L+ L    G   +I TH+ +LA    DR I ++DG
Sbjct: 123 LREL-AEEGRTVIIVTHDPELAELAADRVIVLKDG 156


>gnl|CDD|31327 COG1132, MdlB, ABC-type multidrug transport system, ATPase and
           permease components [Defense mechanisms].
          Length = 567

 Score = 96.7 bits (240), Expect = 5e-21
 Identities = 70/228 (30%), Positives = 108/228 (47%), Gaps = 21/228 (9%)

Query: 7   LLLQNVKHSYRQVGKPFPVLENVHLSLKKGEIVALVSPSGTGKSTILH-IAGLLEVPDQG 65
           +  +NV  SY       PVL+++  S++ GE VA+V PSG+GKST++  +  L + P  G
Sbjct: 329 IEFENVSFSY---PGKKPVLKDISFSIEPGEKVAIVGPSGSGKSTLIKLLLRLYD-PTSG 384

Query: 66  NVIIANQLCNKLSDDKKSFLRCSKIGFVYQEHRLLMDFSVIENIIF-------PQIIAGI 118
            ++I       + D     LR  +IG V Q+  LL   ++ ENI          +I   +
Sbjct: 385 EILIDGI---DIRDISLDSLR-KRIGIVSQDP-LLFSGTIRENIALGRPDATDEEIEEAL 439

Query: 119 NHKTAYQRAMDLLSYMDMSQYANRRSSDISGGEQQRVAICRAIANKPLIILADEPTGNLD 178
               A++   +L    D       R  ++SGG++QR+AI RA+   P I++ DE T  LD
Sbjct: 440 KLANAHEFIANLPDGYDT--IVGERGVNLSGGQRQRLAIARALLRNPPILILDEATSALD 497

Query: 179 LKTAQQVFSILKYLVVRSGLAALIATHNHDLASQMDRQITIRDGMIAD 226
            +T   +   LK L    G   LI  H        DR I + +G I +
Sbjct: 498 TETEALIQDALKKL--LKGRTTLIIAHRLSTIKNADRIIVLDNGRIVE 543


>gnl|CDD|34592 COG4987, CydC, ABC-type transport system involved in cytochrome bd
           biosynthesis, fused ATPase and permease components
           [Energy production and conversion / Posttranslational
           modification, protein turnover, chaperones].
          Length = 573

 Score = 95.3 bits (237), Expect = 1e-20
 Identities = 64/227 (28%), Positives = 105/227 (46%), Gaps = 16/227 (7%)

Query: 6   VLLLQNVKHSYRQVGKPFPVLENVHLSLKKGEIVALVSPSGTGKSTILHIAGLLEVPDQG 65
            L L+NV  +Y   G+    L+N +L+L +GE VA++  SG+GKST+L +      P QG
Sbjct: 336 ALELRNVSFTYP--GQQTKALKNFNLTLAQGEKVAILGRSGSGKSTLLQLLAGAWDPQQG 393

Query: 66  NVIIANQLCNKLSDDKKSFLRCSKIGFVYQEHRLLMDFSVIENIIFPQIIAGINHKTAYQ 125
           ++ +       L +          I  + Q   L    ++ +N+      A      A  
Sbjct: 394 SITLNGVEIASLDEQALR----ETISVLTQRVHLFSG-TLRDNLRLANPDASDEELWAAL 448

Query: 126 RAMDLLSYM-DMSQYANRRSSD----ISGGEQQRVAICRA-IANKPLIILADEPTGNLDL 179
           + + L   +       N    +    +SGGE++R+A+ RA + + PL +L DEPT  LD 
Sbjct: 449 QQVGLEKLLESAPDGLNTWLGEGGRRLSGGERRRLALARALLHDAPLWLL-DEPTEGLDP 507

Query: 180 KTAQQVFSILKYLVVRSGLAALIATHNHDLASQMDRQITIRDGMIAD 226
            T +QV ++L       G   L+ TH      +MDR I + +G I +
Sbjct: 508 ITERQVLALL--FEHAEGKTLLMVTHRLRGLERMDRIIVLDNGKIIE 552


>gnl|CDD|73026 cd03267, ABC_NatA_like, Similar in sequence to NatA, this is the
           ATPase component of a bacterial ABC-type Na+ transport
           system called NatAB, which catalyzes ATP-dependent
           electrogenic Na+ extrusion without mechanically coupled
           to proton or K+ uptake.  NatB possess six putative
           membrane spanning regions at its C-terminus.  In B.
           subtilis, NatAB is inducible by agents such as ethanol
           and protonophores, which lower the protonmotive force
           across the membrane.  The closest sequence similarity to
           NatA is exhibited by DrrA of the two-component
           daunomycin- and doxorubicin-efflux system.  Hence, the
           functional NatAB is presumably assembled with two copies
           of the single ATP-binding protein and the single
           intergral membrane protein..
          Length = 236

 Score = 94.9 bits (236), Expect = 2e-20
 Identities = 60/220 (27%), Positives = 109/220 (49%), Gaps = 9/220 (4%)

Query: 8   LLQNVKHSYRQVGKPFPVLENVHLSLKKGEIVALVSPSGTGKSTILHI-AGLLEVPDQGN 66
           L+ ++K  +++  +    L+ +  +++KGEIV  + P+G GK+T L I +GLL  P  G 
Sbjct: 19  LIGSLKSLFKRKYREVEALKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLL-QPTSGE 77

Query: 67  VIIANQLCNKLSDDKKSFLRCSKIGFVY-QEHRLLMDFSVIENIIFPQIIAGINHKTAYQ 125
           V +A  +       +K FLR  +IG V+ Q+ +L  D  VI++      I  +      +
Sbjct: 78  VRVAGLVP---WKRRKKFLR--RIGVVFGQKTQLWWDLPVIDSFYLLAAIYDLPPARFKK 132

Query: 126 RAMDLLSYMDMSQYANRRSSDISGGEQQRVAICRAIANKPLIILADEPTGNLDLKTAQQV 185
           R  +L   +D+ +  +     +S G++ R  I  A+ ++P I+  DEPT  LD+   + +
Sbjct: 133 RLDELSELLDLEELLDTPVRQLSLGQRMRAEIAAALLHEPEILFLDEPTIGLDVVAQENI 192

Query: 186 FSILKYLVVRSGLAALIATHN-HDLASQMDRQITIRDGMI 224
            + LK      G   L+ +H   D+ +   R + I  G +
Sbjct: 193 RNFLKEYNRERGTTVLLTSHYMKDIEALARRVLVIDKGRL 232


>gnl|CDD|73010 cd03251, ABCC_MsbA, MsbA is an essential ABC transporter, closely
           related to eukaryotic MDR proteins.  ABC transporters
           are a large family of proteins involved in the transport
           of a wide variety of different compounds, like sugars,
           ions, peptides, and more complex organic molecules.  The
           nucleotide binding domain shows the highest similarity
           between all members of the family.  ABC transporters are
           a subset of nucleotide hydrolases that contain a
           signature motif, Q-loop, and H-loop/switch region, in
           addition to, the Walker A motif/P-loop and Walker B
           motif commonly found in a number of ATP- and GTP-binding
           and hydrolyzing proteins..
          Length = 234

 Score = 94.1 bits (234), Expect = 3e-20
 Identities = 67/225 (29%), Positives = 106/225 (47%), Gaps = 18/225 (8%)

Query: 9   LQNVKHSYRQVGKPFPVLENVHLSLKKGEIVALVSPSGTGKSTILHIAGLLEVPDQGNVI 68
            +NV   Y   G   PVL ++ L +  GE VALV PSG+GKST++++       D G ++
Sbjct: 3   FKNVTFRYP--GDGPPVLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYDVDSGRIL 60

Query: 69  IANQLCNKLSDDKKSFLRCSKIGFVYQEHRLLMDFSVIENIIF-------PQIIAGINHK 121
           I       + D   + LR  +IG V Q+  L  D +V ENI +        ++       
Sbjct: 61  IDGH---DVRDYTLASLR-RQIGLVSQDVFLFND-TVAENIAYGRPGATREEVEEAARAA 115

Query: 122 TAYQRAMDLLSYMDMSQYANRRSSDISGGEQQRVAICRAIANKPLIILADEPTGNLDLKT 181
            A++  M+L    D       R   +SGG++QR+AI RA+   P I++ DE T  LD ++
Sbjct: 116 NAHEFIMELPEGYD--TVIGERGVKLSGGQRQRIAIARALLKDPPILILDEATSALDTES 173

Query: 182 AQQVFSILKYLVVRSGLAALIATHNHDLASQMDRQITIRDGMIAD 226
            + V + L+ L+        +  H        DR + + DG I +
Sbjct: 174 ERLVQAALERLMK--NRTTFVIAHRLSTIENADRIVVLEDGKIVE 216


>gnl|CDD|73023 cd03264, ABC_drug_resistance_like, ABC-type multidrug transport
           system, ATPase component.  The biological function of
           this family is not well characterized, but display ABC
           domains similar to members of ABCA subfamily.  ABC
           transporters are a large family of proteins involved in
           the transport of a wide variety of different compounds,
           like sugars, ions, peptides, and more complex organic
           molecules.  The nucleotide binding domain shows the
           highest similarity between all members of the family.
           ABC transporters are a subset of nucleotide hydrolases
           that contain a signature motif, Q-loop, and
           H-loop/switch region, in addition to, the Walker A
           motif/P-loop and Walker B motif commonly found in a
           number of ATP- and GTP-binding and hydrolyzing
           proteins..
          Length = 211

 Score = 93.3 bits (232), Expect = 5e-20
 Identities = 57/220 (25%), Positives = 107/220 (48%), Gaps = 13/220 (5%)

Query: 7   LLLQNVKHSYRQVGKPFPVLENVHLSLKKGEIVALVSPSGTGKSTILHIAGLLEVPDQGN 66
           L L+N+   Y +  +    L+ V L+L  G +  L+ P+G GK+T++ I   L  P  G 
Sbjct: 1   LQLENLTKRYGK-KR---ALDGVSLTLGPG-MYGLLGPNGAGKTTLMRILATLTPPSSGT 55

Query: 67  VIIANQLCNKLSDDKKSFLRCSKIGFVYQEHRLLMDFSVIENIIFPQIIAGINHKTAYQR 126
           + I  Q    +    +   R  +IG++ QE  +  +F+V E + +   + GI  K    R
Sbjct: 56  IRIDGQ---DVLKQPQKLRR--RIGYLPQEFGVYPNFTVREFLDYIAWLKGIPSKEVKAR 110

Query: 127 AMDLLSYMDMSQYANRRSSDISGGEQQRVAICRAIANKPLIILADEPTGNLDLKTAQQVF 186
             ++L  +++   A ++   +SGG ++RV I +A+   P I++ DEPT  LD +   +  
Sbjct: 111 VDEVLELVNLGDRAKKKIGSLSGGMRRRVGIAQALVGDPSILIVDEPTAGLDPEERIRFR 170

Query: 187 SILKYLVVRSGLAALIATHN-HDLASQMDRQITIRDGMIA 225
           ++L  L        +++TH   D+ S  ++   +  G + 
Sbjct: 171 NLLSELG--EDRIVILSTHIVEDVESLCNQVAVLNKGKLV 208


>gnl|CDD|33900 COG4148, ModC, ABC-type molybdate transport system, ATPase
           component [Inorganic ion transport and metabolism].
          Length = 352

 Score = 93.0 bits (231), Expect = 6e-20
 Identities = 56/191 (29%), Positives = 102/191 (53%), Gaps = 13/191 (6%)

Query: 38  IVALVSPSGTGKSTILHIAGLLEVPDQGNVIIANQLCNKLSD-DKKSFLRCSK--IGFVY 94
           I AL  PSG+GK++++++   L  PD+G + +  ++   L D +K  FL   K  IG+V+
Sbjct: 26  ITALFGPSGSGKTSLINMIAGLTRPDEGRIELNGRV---LVDAEKGIFLPPEKRRIGYVF 82

Query: 95  QEHRLLMDFSVIENIIFPQIIAGINHKTAYQRAMDLLSYMDMSQYANRRSSDISGGEQQR 154
           Q+ RL   ++V  N+ +         K+   +   L++ + +    +R    +SGGE+QR
Sbjct: 83  QDARLFPHYTVRGNLRYGM------WKSMRAQFDQLVALLGIEHLLDRYPGTLSGGEKQR 136

Query: 155 VAICRAIANKPLIILADEPTGNLDLKTAQQVFSILKYLVVRSGLAALIATHNHDLASQM- 213
           VAI RA+   P ++L DEP  +LDL   +++   L+ L     +  L  +H+ D   ++ 
Sbjct: 137 VAIGRALLTAPELLLMDEPLASLDLPRKREILPYLERLRDEINIPILYVSHSLDEVLRLA 196

Query: 214 DRQITIRDGMI 224
           DR + + +G +
Sbjct: 197 DRVVVLENGKV 207


>gnl|CDD|73178 COG4608, AppF, ABC-type oligopeptide transport system, ATPase
           component [Amino acid transport and metabolism].
          Length = 268

 Score = 92.6 bits (230), Expect = 8e-20
 Identities = 56/232 (24%), Positives = 101/232 (43%), Gaps = 48/232 (20%)

Query: 3   SAEVLLLQNVKHSYR-----QVGKPFPVLENVHLSLKKGEIVALVSPSGTGKSTILHIAG 57
              +L ++N+K  +         +    ++ V  S+K+GE + LV  SG GKST+  +  
Sbjct: 1   MEPLLEVKNLKKYFPVGKGFGKKRYVKAVDGVSFSIKEGETLGLVGESGCGKSTLGRLIL 60

Query: 58  LLEVPDQGNVIIANQLCNKLSDDKKSFLRCSKIGFVYQEHRLLMDFSVIENIIFPQIIAG 117
            LE P  G ++   +   KLS +++                                   
Sbjct: 61  GLEEPTSGEILFEGKDITKLSKEER----------------------------------- 85

Query: 118 INHKTAYQRAMDLLSYMDMSQ-YANRRSSDISGGEQQRVAICRAIANKPLIILADEPTGN 176
                  +R ++LL  + + + +  R   ++SGG++QR+ I RA+A  P +I+ADEP   
Sbjct: 86  ------RERVLELLEKVGLPEEFLYRYPHELSGGQRQRIGIARALALNPKLIVADEPVSA 139

Query: 177 LDLKTAQQVFSILKYLVVRSGLAALIATHNHDLASQM-DRQITIRDGMIADL 227
           LD+    Q+ ++LK L    GL  L  +H+  +   + DR   +  G I ++
Sbjct: 140 LDVSVQAQILNLLKDLQEELGLTYLFISHDLSVVRYISDRIAVMYLGKIVEI 191


>gnl|CDD|73013 cd03254, ABCC_Glucan_exporter_like, Glucan exporter ATP-binding
           protein.  In A. tumefaciens cyclic beta-1, 2-glucan must
           be transported into the periplasmic space to exert its
           action as a virluence factor.  This subfamily belongs to
           the MRP-like family and is involved in drug, peptide,
           and lipid export.  The MRP-like family, similar to all
           ABC proteins, have a common four-domain core structure
           constituted by two membrane-spanning domains each
           composed of six transmembrane (TM) helices and two
           nucleotide-binding domains (NBD).  ABC transporters are
           a subset of nucleotide hydrolases that contain a
           signature motif, Q-loop, and H-loop/switch region, in
           addition to, the Walker A motif/P-loop and Walker B
           motif commonly found in a number of ATP- and GTP-binding
           and hydrolyzing proteins..
          Length = 229

 Score = 92.6 bits (230), Expect = 9e-20
 Identities = 62/220 (28%), Positives = 106/220 (48%), Gaps = 15/220 (6%)

Query: 10  QNVKHSYRQVGKPFPVLENVHLSLKKGEIVALVSPSGTGKSTILHIAGLLEVPDQGNVII 69
           +NV  SY    +  PVL++++ S+K GE VA+V P+G GK+T++++      P +G ++I
Sbjct: 6   ENVNFSYD---EKKPVLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDPQKGQILI 62

Query: 70  ANQLCNKLSDDKKSFLRCSKIGFVYQEHRLLMDFSVIENIIFPQIIAG---INHKTAYQR 126
                  + D  +  LR S IG V Q+  L    +++ENI   +  A    +        
Sbjct: 63  DGI---DIRDISRKSLR-SMIGVVLQDTFLFSG-TIMENIRLGRPNATDEEVIEAAKEAG 117

Query: 127 AMDLLSYM--DMSQYANRRSSDISGGEQQRVAICRAIANKPLIILADEPTGNLDLKTAQQ 184
           A D +  +             ++S GE+Q +AI RA+   P I++ DE T N+D +T + 
Sbjct: 118 AHDFIMKLPNGYDTVLGENGGNLSQGERQLLAIARAMLRDPKILILDEATSNIDTETEKL 177

Query: 185 VFSILKYLVVRSGLAALIATHNHDLASQMDRQITIRDGMI 224
           +   L+ L    G  ++I  H        D+ + + DG I
Sbjct: 178 IQEALEKL--MKGRTSIIIAHRLSTIKNADKILVLDDGKI 215


>gnl|CDD|73012 cd03253, ABCC_ATM1_transporter, ATM1 is an ABC transporter that is
           expressed in the mitochondria.  Although the specific
           function of ATM1 is unknown, its disruption results in
           the accumulation of excess mitochondrial iron, loss of
           mitochondrial cytochromes, oxidative damage to
           mitochondrial DNA, and decreased levels of cytosolic
           heme proteins.  ABC transporters are a large family of
           proteins involved in the transport of a wide variety of
           different compounds, like sugars, ions, peptides, and
           more complex organic molecules.  The nucleotide binding
           domain shows the highest similarity between all members
           of the family.  ABC transporters are a subset of
           nucleotide hydrolases that contain a signature motif,
           Q-loop, and H-loop/switch region, in addition to, the
           Walker A motif/P-loop and Walker B motif commonly found
           in a number of ATP- and GTP-binding and hydrolyzing
           proteins..
          Length = 236

 Score = 92.2 bits (229), Expect = 1e-19
 Identities = 69/223 (30%), Positives = 104/223 (46%), Gaps = 15/223 (6%)

Query: 9   LQNVKHSYRQVGKPFPVLENVHLSLKKGEIVALVSPSGTGKSTILHIAGLLEVPDQGNVI 68
            +NV  +Y       PVL++V  ++  G+ VA+V PSG+GKSTIL +         G+++
Sbjct: 3   FENVTFAYDP---GRPVLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYDVSSGSIL 59

Query: 69  IANQLCNKLSDDKKSFLRCSKIGFVYQEHRLLMDFSVIENIIFPQIIAG-INHKTAYQRA 127
           I  Q    + +     LR   IG V Q+  L  D ++  NI + +  A       A + A
Sbjct: 60  IDGQ---DIREVTLDSLR-RAIGVVPQDTVLFND-TIGYNIRYGRPDATDEEVIEAAKAA 114

Query: 128 MDLLSYMDMSQ-YANR---RSSDISGGEQQRVAICRAIANKPLIILADEPTGNLDLKTAQ 183
                 M     Y      R   +SGGE+QRVAI RAI   P I+L DE T  LD  T +
Sbjct: 115 QIHDKIMRFPDGYDTIVGERGLKLSGGEKQRVAIARAILKNPPILLLDEATSALDTHTER 174

Query: 184 QVFSILKYLVVRSGLAALIATHNHDLASQMDRQITIRDGMIAD 226
           ++ + L+   V  G   ++  H        D+ I ++DG I +
Sbjct: 175 EIQAALR--DVSKGRTTIVIAHRLSTIVNADKIIVLKDGRIVE 215


>gnl|CDD|33632 COG3840, ThiQ, ABC-type thiamine transport system, ATPase component
           [Coenzyme metabolism].
          Length = 231

 Score = 91.9 bits (228), Expect = 1e-19
 Identities = 52/201 (25%), Positives = 98/201 (48%), Gaps = 17/201 (8%)

Query: 31  LSLKKGEIVALVSPSGTGKSTILHIAGLLEVPDQGNVIIANQLCNKLSDDKKSFLRCSKI 90
           L++  GEIVA++ PSG GKST+L++    E P  G ++I           ++       +
Sbjct: 20  LTVPAGEIVAILGPSGAGKSTLLNLIAGFETPASGEILINGVDHTASPPAERP------V 73

Query: 91  GFVYQEHRLLMDFSVIENIIFPQIIAGIN-----HKTAYQRAMDLLSYMDMSQYANRRSS 145
             ++QE+ L    +V +NI       G++     +    ++     + + ++ +  R   
Sbjct: 74  SMLFQENNLFAHLTVAQNIGL-----GLSPGLKLNAEQREKVEAAAAQVGLAGFLKRLPG 128

Query: 146 DISGGEQQRVAICRAIANKPLIILADEPTGNLDLKTAQQVFSILKYLVVRSGLAALIATH 205
           ++SGG++QRVA+ R +  +  I+L DEP   LD     ++ +++  L     +  L+ TH
Sbjct: 129 ELSGGQRQRVALARCLVREQPILLLDEPFSALDPALRAEMLALVSQLCDERKMTLLMVTH 188

Query: 206 N-HDLASQMDRQITIRDGMIA 225
           +  D A   DR + + +G IA
Sbjct: 189 HPEDAARIADRVVFLDNGRIA 209


>gnl|CDD|35279 KOG0056, KOG0056, KOG0056, Heavy metal exporter HMT1, ABC
           superfamily [Inorganic ion transport and metabolism].
          Length = 790

 Score = 91.6 bits (227), Expect = 1e-19
 Identities = 66/210 (31%), Positives = 101/210 (48%), Gaps = 16/210 (7%)

Query: 24  PVLENVHLSLKKGEIVALVSPSGTGKSTILHIAGLLEVPDQGNVIIANQLCNKLSDDKKS 83
           PVL ++  +++ G+ VALV PSG GKSTI+ +       + G++ I  Q    + +  +S
Sbjct: 552 PVLSDISFTVQPGKTVALVGPSGAGKSTIMRLLFRFFDVNSGSITIDGQ---DIRNVTQS 608

Query: 84  FLRCSKIGFVYQEHRLLMDFSVIENIIFPQIIAGINHKTAYQRAMDL----LSYMDMSQY 139
            LR S IG V Q+  L  D +++ NI + +  A      A  +A  +    L + +   Y
Sbjct: 609 SLR-SSIGVVPQDTVLFND-TILYNIRYAKPSASNEEVYAAAKAAQIHDRILQFPE--GY 664

Query: 140 ANR---RSSDISGGEQQRVAICRAIANKPLIILADEPTGNLDLKTAQQVFSILKYLVVRS 196
             R   R   +SGGE+QRVAI R I   P IIL DE T  LD  T + + + L  L   +
Sbjct: 665 NTRVGERGLKLSGGEKQRVAIARTILKAPSIILLDEATSALDTNTERAIQAALARLC--A 722

Query: 197 GLAALIATHNHDLASQMDRQITIRDGMIAD 226
               ++  H        D  + I +G I +
Sbjct: 723 NRTTIVVAHRLSTIVNADLILVISNGRIVE 752


>gnl|CDD|35280 KOG0057, KOG0057, KOG0057, Mitochondrial Fe/S cluster exporter, ABC
           superfamily [Intracellular trafficking, secretion, and
           vesicular transport].
          Length = 591

 Score = 91.8 bits (228), Expect = 1e-19
 Identities = 57/210 (27%), Positives = 101/210 (48%), Gaps = 19/210 (9%)

Query: 24  PVLENVHLSLKKGEIVALVSPSGTGKSTILH-IAGLLEVPDQGNVIIANQLCNKLSDDKK 82
            VL+ V  ++ KGE VA+V  +G+GKSTIL  +    +    G+++I  Q    + +   
Sbjct: 366 KVLKGVSFTIPKGEKVAIVGSNGSGKSTILRLLLRFFD--YSGSILIDGQ---DIKEVSL 420

Query: 83  SFLRCSKIGFVYQEHRLLMDFSVIENIIFPQIIAGINHKTAYQRAM-----DLLSYMD-- 135
             LR   IG V Q+  +L + +++ NI +    A    +   +        D++S +   
Sbjct: 421 ESLR-QSIGVVPQDS-VLFNDTILYNIKYGNPSAS--DEEVVEACKRAGLHDVISRLPDG 476

Query: 136 MSQYANRRSSDISGGEQQRVAICRAIANKPLIILADEPTGNLDLKTAQQVFSILKYLVVR 195
                  R   +SGGE+QRV++ RA      I+L DE T  LD +T +++  ++  ++  
Sbjct: 477 YQTLVGERGLMLSGGEKQRVSLARAFLKDAPILLLDEATSALDSETEREILDMIMDVM-- 534

Query: 196 SGLAALIATHNHDLASQMDRQITIRDGMIA 225
           SG   ++  H  DL    D+ I + +G + 
Sbjct: 535 SGRTVIMIVHRLDLLKDFDKIIVLDNGTVK 564


>gnl|CDD|35281 KOG0058, KOG0058, KOG0058, Peptide exporter, ABC superfamily
           [Intracellular trafficking, secretion, and vesicular
           transport].
          Length = 716

 Score = 91.6 bits (227), Expect = 2e-19
 Identities = 66/226 (29%), Positives = 105/226 (46%), Gaps = 17/226 (7%)

Query: 9   LQNVKHSYRQVGKPFPVLENVHLSLKKGEIVALVSPSGTGKSTILHIAGLLEVPDQGNVI 68
            ++V  +Y       PVL+N+  +++ GE+VALV PSG+GKSTI  +      P  G ++
Sbjct: 468 FEDVSFAYPT-RPDVPVLKNLSFTIRPGEVVALVGPSGSGKSTIASLLLRFYDPTSGRIL 526

Query: 69  IANQLCNKLSDDKKSFLRCSKIGFVYQEHRLLMDFSVIENIIFPQIIAGINH-----KTA 123
           +       +SD    +LR  KIG V QE  +L   S+ ENI +    A         K A
Sbjct: 527 LDGV---PISDINHKYLR-RKIGLVGQE-PVLFSGSIRENIAYGLDNATDEEIEAAAKMA 581

Query: 124 YQRAMDLLSYMDMSQYAN--RRSSDISGGEQQRVAICRAIANKPLIILADEPTGNLDLKT 181
              A + ++            + S +SGG++QR+AI RA+   P +++ DE T  LD ++
Sbjct: 582 N--AHEFITNFPDGYNTVVGEKGSQLSGGQKQRIAIARALLRNPRVLILDEATSALDAES 639

Query: 182 AQQVFSILKYLVVRSGLAALIATHNHDLASQMDRQITIRDGMIADL 227
              V   L  L    G   L+  H        D+ + I  G + ++
Sbjct: 640 EYLVQEALDRL--MQGRTVLVIAHRLSTVRHADQIVVIDKGRVVEM 683


>gnl|CDD|30834 COG0488, Uup, ATPase components of ABC transporters with duplicated
           ATPase domains [General function prediction only].
          Length = 530

 Score = 90.3 bits (224), Expect = 3e-19
 Identities = 60/243 (24%), Positives = 104/243 (42%), Gaps = 54/243 (22%)

Query: 5   EVLLLQNVKHSYRQVGKPFPVLENVHLSLKKGEIVALVSPSGTGKSTILHIAGLLEVPDQ 64
            ++ L+N+  +Y       P+LENV L+L  GE + LV  +G GKST+L I      PD 
Sbjct: 2   SMITLENLSLAYGDR----PLLENVSLTLNPGERIGLVGRNGAGKSTLLKILAGELEPDS 57

Query: 65  GNVIIANQLCNKLSDDKKSFLRCSKIGFVYQEHRLLMDFSVIENII-------------- 110
           G V     L               ++G++ QE  L  + +V++ +I              
Sbjct: 58  GEVTRPKGL---------------RVGYLSQEPPLDPEKTVLDYVIEGFGELRELLAELE 102

Query: 111 ----------------FPQIIAGINHKTAYQRAMDLLSYMDMSQYANRRSSDISGGEQQR 154
                              ++  ++  T   RA + L  +      +R  S +SGG ++R
Sbjct: 103 EAYALLADPDDELLAELEALLEELDGWTLEARAEEALLGLGFPD-EDRPVSSLSGGWRRR 161

Query: 155 VAICRAIANKPLIILADEPTGNLDLKTAQQVFSILKYLVVRSGLAALIATHNHDLASQMD 214
           VA+ RA+  +P ++L DEPT +LDL++ + +     YL    G   ++ +H+      + 
Sbjct: 162 VALARALLEEPDLLLLDEPTNHLDLESIEWLED---YLKRYPG-TVIVVSHDRYFLDNVA 217

Query: 215 RQI 217
             I
Sbjct: 218 THI 220



 Score = 79.1 bits (195), Expect = 1e-15
 Identities = 52/217 (23%), Positives = 95/217 (43%), Gaps = 36/217 (16%)

Query: 6   VLLLQNVKHSYRQVGKPFPVLENVHLSLKKGEIVALVSPSGTGKSTILH-IAGLLEVPDQ 64
           VL  +NV   Y        +L+++   + +G+ +A+V P+G GKST+L  +AG L  P  
Sbjct: 321 VLEFENVSKGY---DGGRLLLKDLSFRIDRGDRIAIVGPNGAGKSTLLKLLAGELG-PLS 376

Query: 65  GNVIIANQLCNKLSDDKKSFLRCSKIGFVYQEH-RLLMDFSVIENI--IFPQIIAGINHK 121
           G V +   +               KIG+  Q    L  D +V+E +   FP         
Sbjct: 377 GTVKVGETV---------------KIGYFDQHRDELDPDKTVLEELSEGFPDGD------ 415

Query: 122 TAYQRAMDLLSYMDMSQ-YANRRSSDISGGEQQRVAICRAIANKPLIILADEPTGNLDLK 180
              Q     L     +     +    +SGGE+ R+ + + +   P ++L DEPT +LD++
Sbjct: 416 --EQEVRAYLGRFGFTGEDQEKPVGVLSGGEKARLLLAKLLLQPPNLLLLDEPTNHLDIE 473

Query: 181 TAQQVFSILKYLVVRSGLAALIATHNHDLASQMDRQI 217
           + +    + + L+   G   L+ +H+     ++  +I
Sbjct: 474 SLEA---LEEALLDFEG-TVLLVSHDRYFLDRVATRI 506


>gnl|CDD|34235 COG4604, CeuD, ABC-type enterochelin transport system, ATPase
           component [Inorganic ion transport and metabolism].
          Length = 252

 Score = 90.3 bits (224), Expect = 4e-19
 Identities = 56/220 (25%), Positives = 104/220 (47%), Gaps = 11/220 (5%)

Query: 9   LQNVKHSYRQVGKPFPVLENVHLSLKKGEIVALVSPSGTGKSTILHIAGLLEVPDQGNVI 68
           ++NV  SY        VL++V L + KG I +++ P+G GKST+L +   L   D G + 
Sbjct: 4   IENVSKSYGTK----VVLDDVSLDIPKGGITSIIGPNGAGKSTLLSMMSRLLKKDSGEIT 59

Query: 69  IANQLCNKLSDDKKSFLRCSKIGFVYQEHRLLMDFSVIENIIFPQIIAGINHKTAYQRAM 128
           I           + +     K+  + QE+ +    +V + + F +        T   R +
Sbjct: 60  IDGLELTSTPSKELA----KKLSILKQENHINSRLTVRDLVGFGRFPYSQGRLTKEDRRI 115

Query: 129 --DLLSYMDMSQYANRRSSDISGGEQQRVAICRAIANKPLIILADEPTGNLDLKTAQQVF 186
             + + Y+ +   ++R   ++SGG++QR  I   +A     +L DEP  NLD+K + Q+ 
Sbjct: 116 INEAIEYLHLEDLSDRYLDELSGGQRQRAFIAMVLAQDTDYVLLDEPLNNLDMKHSVQIM 175

Query: 187 SILKYLVVRSGLAALIATHNHDLASQ-MDRQITIRDGMIA 225
            IL+ L    G   ++  H+ + AS   D  + +++G + 
Sbjct: 176 KILRRLADELGKTIVVVLHDINFASCYSDHIVALKNGKVV 215


>gnl|CDD|73008 cd03249, ABC_MTABC3_MDL1_MDL2, MTABC3 (also known as ABCB6) is a
           mitochondrial ATP-binding cassette protein involved in
           iron homeostasis and one of four ABC transporters
           expressed in the mitochondrial inner membrane, the other
           three being MDL1(ABC7), MDL2, and ATM1.  In fact, the
           yeast MDL1 (multidrug resistance-like protein 1) and
           MDL2 (multidrug resistance-like protein 2) transporters
           are also included in this CD.  MDL1 is an ATP-dependent
           permease that acts as a high-copy suppressor of ATM1 and
           is thought to have a role in resistance to oxidative
           stress. Interestingly, subfamily B is more closely
           related to the carboxyl-terminal component of subfamily
           C than the two halves of ABCC molecules are with one
           another..
          Length = 238

 Score = 89.8 bits (223), Expect = 5e-19
 Identities = 62/226 (27%), Positives = 102/226 (45%), Gaps = 19/226 (8%)

Query: 9   LQNVKHSYRQVGKP-FPVLENVHLSLKKGEIVALVSPSGTGKSTILHIAGLLEVPDQGNV 67
            +NV   Y    +P  P+L+ + L++  G+ VALV  SG GKST++ +      P  G +
Sbjct: 3   FKNVSFRYPS--RPDVPILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYDPTSGEI 60

Query: 68  IIANQLCNKLSDDKKSFLRCSKIGFVYQEHRLLMDFSVIENIIF-------PQIIAGINH 120
           ++       L+     +LR S+IG V QE  +L D ++ ENI +        ++      
Sbjct: 61  LLDGVDIRDLN---LRWLR-SQIGLVSQE-PVLFDGTIAENIRYGKPDATDEEVEEAAKK 115

Query: 121 KTAYQRAMDLLSYMDMSQYANRRSSDISGGEQQRVAICRAIANKPLIILADEPTGNLDLK 180
              +   M L    D       R S +SGG++QR+AI RA+   P I+L DE T  LD +
Sbjct: 116 ANIHDFIMSLPDGYD--TLVGERGSQLSGGQKQRIAIARALLRNPKILLLDEATSALDAE 173

Query: 181 TAQQVFSILKYLVVRSGLAALIATHNHDLASQMDRQITIRDGMIAD 226
           + + V   L       G   ++  H        D    +++G + +
Sbjct: 174 SEKLVQEALDR--AMKGRTTIVIAHRLSTIRNADLIAVLQNGQVVE 217


>gnl|CDD|73027 cd03268, ABC_BcrA_bacitracin_resist, The BcrA subfamily represents
           ABC transporters involved in peptide antibiotic
           resistance.  Bacitracin is a dodecapeptide antibiotic
           produced by B. licheniformis and B. subtilis.  The
           synthesis of bacitracin is non-ribosomally catalyzed by
           a multienzyme complex BcrABC.  Bacitracin has potent
           antibiotic activity against gram-positive bacteria.  The
           inhibition of peptidoglycan biosynthesis is the best
           characterized bacterial effect of bacitracin.  The
           bacitracin resistance of B. licheniformis is mediated by
           the ABC transporter Bcr which is composed of two
           identical BcrA ATP-binding subunits and one each of the
           integral membrane proteins, BcrB and BcrC.  B. subtilis
           cells carrying bcr genes on high-copy number plasmids
           develop collateral detergent sensitivity, a similar
           phenomenon in human cells with overexpressed multi-drug
           resistance P-glycoprotein..
          Length = 208

 Score = 89.5 bits (222), Expect = 6e-19
 Identities = 52/212 (24%), Positives = 96/212 (45%), Gaps = 15/212 (7%)

Query: 17  RQVGKPF---PVLENVHLSLKKGEIVALVSPSGTGKSTILHIAGLLEVPDQGNVIIANQL 73
             + K +    VL+++ L +KKGEI   + P+G GK+T + I   L  PD G +    + 
Sbjct: 4   NDLTKTYGKKRVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPDSGEITFDGKS 63

Query: 74  CNKLSDDKKSFLRCSKIGFVYQEHRLLMDFSVIENIIFPQIIAGINHKTAYQRAMDLLSY 133
             K  +  +      +IG + +      + +  EN+     + GI  K    R  ++L  
Sbjct: 64  YQKNIEALR------RIGALIEAPGFYPNLTARENLRLLARLLGIRKK----RIDEVLDV 113

Query: 134 MDMSQYANRRSSDISGGEQQRVAICRAIANKPLIILADEPTGNLDLKTAQQVFSILKYLV 193
           + +   A ++    S G +QR+ I  A+   P +++ DEPT  LD    +++  ++  L 
Sbjct: 114 VGLKDSAKKKVKGFSLGMKQRLGIALALLGNPDLLILDEPTNGLDPDGIKELRELILSL- 172

Query: 194 VRSGLAALIATHN-HDLASQMDRQITIRDGMI 224
              G+  LI++H   ++    DR   I  G +
Sbjct: 173 RDQGITVLISSHLLSEIQKVADRIGIINKGKL 204


>gnl|CDD|73004 cd03245, ABCC_bacteriocin_exporters, ABC-type bacteriocin
           exporters. Many non-lantibiotic bacteriocins of lactic
           acid bacteria are produced as precursors which have
           N-terminal leader peptides that share similarities in
           amino acid sequence and contain a conserved processing
           site of two glycine residues in positions -1 and -2.  A
           dedicated ATP-binding cassette (ABC) transporter is
           responsible for the proteolytic cleavage of the leader
           peptides and subsequent translocation of the
           bacteriocins across the cytoplasmic membrane..
          Length = 220

 Score = 89.1 bits (221), Expect = 9e-19
 Identities = 68/231 (29%), Positives = 116/231 (50%), Gaps = 29/231 (12%)

Query: 9   LQNVKHSYRQVGKPFPVLENVHLSLKKGEIVALVSPSGTGKSTILH-IAGLLEVPDQGNV 67
            +NV  SY    +  P L+NV L+++ GE VA++   G+GKST+L  +AGL + P  G+V
Sbjct: 5   FRNVSFSYP--NQEIPALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYK-PTSGSV 61

Query: 68  IIANQLCNKLSDDKKSFLRCSKIGFVYQEHRLLMDFSVIENIIFPQIIAGINHKTAYQRA 127
           ++      +L     + LR   IG+V Q+  L    ++ +NI     +A        +R 
Sbjct: 62  LLDGTDIRQLD---PADLR-RNIGYVPQDVTLFYG-TLRDNITLGAPLA------DDERI 110

Query: 128 MDLLSYMDMSQYANR-----------RSSDISGGEQQRVAICRAIANKPLIILADEPTGN 176
           +       ++ + N+           R   +SGG++Q VA+ RA+ N P I+L DEPT  
Sbjct: 111 LRAAELAGVTDFVNKHPNGLDLQIGERGRGLSGGQRQAVALARALLNDPPILLLDEPTSA 170

Query: 177 LDLKTAQQVFSILKYLVVRSGLAALIATHNHDLASQMDRQITIRDG-MIAD 226
           +D+ + +++   L+ L+       +I TH   L   +DR I +  G ++AD
Sbjct: 171 MDMNSEERLKERLRQLL--GDKTLIIITHRPSLLDLVDRIIVMDSGRIVAD 219


>gnl|CDD|33864 COG4107, PhnK, ABC-type phosphonate transport system, ATPase
           component [Inorganic ion transport and metabolism].
          Length = 258

 Score = 88.8 bits (220), Expect = 1e-18
 Identities = 65/237 (27%), Positives = 107/237 (45%), Gaps = 16/237 (6%)

Query: 1   MDSAEVLLLQNVKHSY-RQVGKPFPVLENVHLSLKKGEIVALVSPSGTGKSTILHIAGLL 59
           M    +L +  +   Y    G       +V   L  GE++ +V  SG+GK+T+L      
Sbjct: 1   MMDKPLLSVSGLSKLYGPGKG-----CRDVSFDLYPGEVLGIVGESGSGKTTLLKCISGR 55

Query: 60  EVPDQGNVIIANQLCN-----KLSDDKKSFLRCSKIGFVYQEHR--LLMDFSVIENIIFP 112
             PD G V    +         +S+ ++  L  ++ GFV+Q  R  L M  S   NI   
Sbjct: 56  LTPDAGTVTYRMRDGQPRDLYTMSEAERRRLLRTEWGFVHQNPRDGLRMQVSAGGNIGER 115

Query: 113 QIIAGINH-KTAYQRAMDLLSYMDMSQ-YANRRSSDISGGEQQRVAICRAIANKPLIILA 170
            +  G  H       A D L  +++     +      SGG QQR+ I R +  +P ++  
Sbjct: 116 LMAIGARHYGNIRAEAQDWLEEVEIDLDRIDDLPRTFSGGMQQRLQIARNLVTRPRLVFM 175

Query: 171 DEPTGNLDLKTAQQVFSILKYLVVRSGLAALIATHNHDLASQM-DRQITIRDGMIAD 226
           DEPTG LD+    ++  +L+ LV   GLA +I TH+  +A  + DR + ++ G + +
Sbjct: 176 DEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHDLAVARLLADRLMVMKQGQVVE 232


>gnl|CDD|72993 cd03234, ABCG_White, The White subfamily represents ABC
           transporters homologous to the Drosophila white gene,
           which acts as a dimeric importer for eye pigment
           precursors.  The eye pigmentation of Drosophila is
           developed from the synthesis and deposition in the cells
           of red pigments, which are synthesized from guanine, and
           brown pigments, which are synthesized from tryptophan.
           The pigment precursors are encoded by the white, brown,
           and scarlet genes, respectively.  Evidence from genetic
           and biochemical studies suggest that the White and Brown
           proteins function as heterodimers to import guanine,
           while the White and Scarlet proteins function to import
           tryptophan.  However, a recent study also suggests that
           White may be involved in the transport of a metabolite,
           such as 3-hydroxykynurenine, across intracellular
           membranes.  Mammalian ABC transporters belonging to the
           White subfamily (ABCG1, ABCG5, and ABCG8) have been
           shown to be involved in the regulation of
           lipid-trafficking mechanisms in macrophages,
           hepatocytes, and intestinal mucosa cells.  ABCG1 (ABC8),
           the human homolog of the Drosophila white gene is
           induced in monocyte-derived macrophages during
           cholesterol influx mediated by acetylated low-density
           lipoprotein.  It is possible that human ABCG1 forms
           heterodimers with several heterologous partners..
          Length = 226

 Score = 88.7 bits (220), Expect = 1e-18
 Identities = 54/207 (26%), Positives = 95/207 (45%), Gaps = 15/207 (7%)

Query: 6   VLLLQNVKHSYRQVGKPFPVLENVHLSLKKGEIVALVSPSGTGKSTILH-IAGLLEVPD- 63
           VL   +V    +   K   +L +V L ++ G+++A++  SG+GK+T+L  I+G +E    
Sbjct: 3   VLPWWDVGLKAKNWNKYARILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGT 62

Query: 64  -QGNVIIANQLCNKLSDDKKSFLRCSKIGFVYQEHRLLMDFSVIENIIFPQIIAGINHKT 122
             G ++   Q           F +C  + +V Q+  LL   +V E + +  I+      +
Sbjct: 63  TSGQILFNGQ-----PRKPDQFQKC--VAYVRQDDILLPGLTVRETLTYTAILRLPRKSS 115

Query: 123 AYQRAM----DLLSYMDMSQYANRRSSDISGGEQQRVAICRAIANKPLIILADEPTGNLD 178
              R       LL  + +++        ISGGE++RV+I   +   P +++ DEPT  LD
Sbjct: 116 DAIRKKRVEDVLLRDLALTRIGGNLVKGISGGERRRVSIAVQLLWDPKVLILDEPTSGLD 175

Query: 179 LKTAQQVFSILKYLVVRSGLAALIATH 205
             TA  + S L  L  R     ++  H
Sbjct: 176 SFTALNLVSTLSQL-ARRNRIVILTIH 201


>gnl|CDD|34201 COG4559, COG4559, ABC-type hemin transport system, ATPase component
           [Inorganic ion transport and metabolism].
          Length = 259

 Score = 88.4 bits (219), Expect = 1e-18
 Identities = 65/221 (29%), Positives = 101/221 (45%), Gaps = 18/221 (8%)

Query: 15  SYRQVGKPFPVLENVHLSLKKGEIVALVSPSGTGKSTIL-HIAGLLEVPDQGNVIIANQL 73
           SY   G+   +L+ V L L+ GE++A++ P+G GKST+L  ++G L  PD G V +    
Sbjct: 8   SYSLAGRR--LLDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGELS-PDSGEVTLNGVP 64

Query: 74  CNKLSDDKKSFLRCSKIGFVYQEHRLLMDFSVIENIIFPQIIAGINHKTAYQR--AMDLL 131
            N    ++ +  R      + Q   L   F+V E +   +I      +       A   L
Sbjct: 65  LNSWPPEELARHR----AVLPQNSSLAFPFTVQEVVQMGRIPHRSGREPEEDERIAAQAL 120

Query: 132 SYMDMSQYANRRSSDISGGEQQRVAICRAIAN------KPLIILADEPTGNLDLKTAQQV 185
           +  D+S  A R    +SGGEQQRV + R +A           +  DEPT  LD+      
Sbjct: 121 AATDLSGLAGRDYRTLSGGEQQRVQLARVLAQLWPPVPSGRWLFLDEPTSALDIAHQHHT 180

Query: 186 FSILKYLVVRSGLAALIATHNHDLASQM-DRQITIRDGMIA 225
             + + L  R G A L   H+ +LA+Q  DR + +  G + 
Sbjct: 181 LRLARQL-AREGGAVLAVLHDLNLAAQYADRIVLLHQGRVI 220


>gnl|CDD|73005 cd03246, ABCC_Protease_Secretion, This family represents the ABC
           component of the protease secretion system PrtD, a
           60-kDa integral membrane protein sharing 37% identity
           with HlyB, the ABC component of the alpha-hemolysin
           secretion pathway, in the C-terminal domain.  They
           export degradative enzymes by using a type I protein
           secretion system and  lack an N-terminal signal peptide,
           but contain a C-terminal secretion signal.  The Type I
           secretion apparatus is made up of three components, an
           ABC transporter, a membrane fusion protein (MFP), and an
           outer membrane protein (OMP).  For the HlyA transporter
           complex, HlyB (ABC transporter) and HlyD (MFP) reside in
           the inner membrane of E. coli.  The OMP component is
           TolC, which is thought to interact with the MFP to form
           a continuous channel across the periplasm from the
           cytoplasm to the exterior.  HlyB belongs to the family
           of ABC transporters, which are ubiquitous, ATP-dependent
           transmembrane pumps or channels.  The spectrum of
           transport substrates ranges from inorganic ions,
           nutrients such as amino acids, sugars, or peptides,
           hydrophobic drugs, to large polypeptides, such as HlyA..
          Length = 173

 Score = 88.3 bits (219), Expect = 1e-18
 Identities = 58/219 (26%), Positives = 97/219 (44%), Gaps = 47/219 (21%)

Query: 7   LLLQNVKHSYRQVGKPFPVLENVHLSLKKGEIVALVSPSGTGKSTILH-IAGLLEVPDQG 65
           L ++NV  S+R  G   PVL NV  S++ GE +A++ PSG+GKST+   I GLL  P  G
Sbjct: 1   LEVENV--SFRYPGAEPPVLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLR-PTSG 57

Query: 66  NVIIANQLCNKLSDDKKSFLRCSKIGFVYQEHRLLMDFSVIENIIFPQIIAGINHKTAYQ 125
            V +     ++   D         +G++ Q+  L    S+ ENI                
Sbjct: 58  RVRLDGADISQW--DPNELGDH--VGYLPQDDELF-SGSIAENI---------------- 96

Query: 126 RAMDLLSYMDMSQYANRRSSDISGGEQQRVAICRAIANKPLIILADEPTGNLDLKTAQQV 185
                                +SGG++QR+ + RA+   P I++ DEP  +LD++  + +
Sbjct: 97  ---------------------LSGGQRQRLGLARALYGNPRILVLDEPNSHLDVEGERAL 135

Query: 186 FSILKYLVVRSGLAALIATHNHDLASQMDRQITIRDGMI 224
              +  L    G   ++  H  +  +  DR + + DG +
Sbjct: 136 NQAIAALKAA-GATRIVIAHRPETLASADRILVLEDGRV 173


>gnl|CDD|35284 KOG0061, KOG0061, KOG0061, Transporter, ABC superfamily (Breast
           cancer resistance protein) [Secondary metabolites
           biosynthesis, transport and catabolism].
          Length = 613

 Score = 88.5 bits (219), Expect = 1e-18
 Identities = 60/214 (28%), Positives = 110/214 (51%), Gaps = 21/214 (9%)

Query: 25  VLENVHLSLKKGEIVALVSPSGTGKSTILHI-AGLLE--VPDQGNVIIANQLCNKLSDDK 81
           +L+ V  + K GE++A++ PSG+GK+T+L+  AG L   +   G +++     N    D 
Sbjct: 45  ILKGVSGTAKPGELLAIMGPSGSGKTTLLNALAGRLNGGLKLSGEILL-----NGRPRDS 99

Query: 82  KSFLRCSKIGFVYQEHRLLMDFSVIENIIFPQIIAGINHKTAYQRAM---DLLSYMDMSQ 138
           +SF + S  G+V Q+  LL   +V E + F  ++   +  +  ++     +++S + + +
Sbjct: 100 RSFRKIS--GYVQQDDVLLPTLTVRETLRFSALLRLPSSLSKEEKRERVEEVISELGLEK 157

Query: 139 YANRRSSD-----ISGGEQQRVAICRAIANKPLIILADEPTGNLDLKTAQQVFSILKYLV 193
            A+    +     +SGGE++RV+I   +   P I+  DEPT  LD  +A QV  +LK L 
Sbjct: 158 CADTLIGNPGIRGLSGGERKRVSIALELLTDPSILFLDEPTSGLDSFSALQVVQLLKRL- 216

Query: 194 VRSGLAALIATHN--HDLASQMDRQITIRDGMIA 225
            RSG   +   H    +L    D+ + + +G + 
Sbjct: 217 ARSGRTVICTIHQPSSELFELFDKLLLLSEGEVV 250


>gnl|CDD|31314 COG1117, PstB, ABC-type phosphate transport system, ATPase
           component [Inorganic ion transport and metabolism].
          Length = 253

 Score = 88.3 bits (219), Expect = 2e-18
 Identities = 51/215 (23%), Positives = 99/215 (46%), Gaps = 18/215 (8%)

Query: 1   MDSAEVLLLQNVKHSYRQVGKPFPVLENVHLSLKKGEIVALVSPSGTGKSTILHIAGLL- 59
                 + ++++   Y         L++++L + K ++ AL+ PSG GKST+L     + 
Sbjct: 2   TMKIPAIEVRDLNLYYGD----KHALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMN 57

Query: 60  ----EVPDQGNVIIANQLCNKLSDDKKSFLRCSKIGFVYQEHRLLMDFSVIENIIFPQII 115
                   +G V++  +       D     R  ++G V+Q+       S+ +N+ +   +
Sbjct: 58  DLIPGARVEGEVLLDGKNIYDPKVDVVELRR--RVGMVFQKPNPF-PMSIYDNVAYGLRL 114

Query: 116 AGINHKTAYQRAMDLLS----YMDMSQYANRRSSDISGGEQQRVAICRAIANKPLIILAD 171
            GI  K   +     L     + ++    ++ +  +SGG+QQR+ I RA+A KP ++L D
Sbjct: 115 HGIKDKELDEIVESSLKKAALWDEVKDRLHKSALGLSGGQQQRLCIARALAVKPEVLLMD 174

Query: 172 EPTGNLDLKTAQQVFSILKYLVVRSGLAALIATHN 206
           EPT  LD  +  ++  ++  L  +     +I THN
Sbjct: 175 EPTSALDPISTLKIEELITEL--KKKYTIVIVTHN 207


>gnl|CDD|33892 COG4136, COG4136, ABC-type uncharacterized transport system, ATPase
           component [General function prediction only].
          Length = 213

 Score = 86.9 bits (215), Expect = 4e-18
 Identities = 53/188 (28%), Positives = 90/188 (47%), Gaps = 14/188 (7%)

Query: 25  VLENVHLSLKKGEIVALVSPSGTGKSTILHIAGLLEVPD---QGNVIIANQLCNKLSDDK 81
           +L NV+ ++ KGEIV L+ PSG GKST+L              G + +  Q  + L   +
Sbjct: 17  LLANVNFTIAKGEIVTLMGPSGCGKSTLLSWMIGALAGQFSCTGELWLNEQRLDMLPAAQ 76

Query: 82  KSFLRCSKIGFVYQEHRLLMDFSVIENIIF--PQIIAGINHKTAYQRAMDLLSYMDMSQY 139
           +      +IG ++Q+  L    SV +N++F  P  + G   + A   A   L    +   
Sbjct: 77  R------QIGILFQDALLFPHLSVGQNLLFALPATLKGNARRNA---ANAALERSGLDGA 127

Query: 140 ANRRSSDISGGEQQRVAICRAIANKPLIILADEPTGNLDLKTAQQVFSILKYLVVRSGLA 199
            ++  + +SGG++ RVA+ RA+  +P  +L DEP   LD+    Q    +   V  +G+ 
Sbjct: 128 FHQDPATLSGGQRARVALLRALLAQPKALLLDEPFSRLDVALRDQFRQWVFSEVRAAGIP 187

Query: 200 ALIATHNH 207
            +  TH+ 
Sbjct: 188 TVQVTHDL 195


>gnl|CDD|72975 cd03216, ABC_Carb_Monos_I, This family represents the domain I of
           the carbohydrate uptake proteins that transport only
           monosaccharides (Monos).  The Carb_Monos family is
           involved in the uptake of monosaccharides, such as
           pentoses (such as xylose, arabinose, and ribose) and
           hexoses (such as xylose, arabinose, and ribose), that
           cannot be broken down to simple sugars by hydrolysis.
           Pentoses include xylose, arabinose, and ribose.
           Important hexoses include glucose, galactose, and
           fructose.  In members of the Carb_monos family, the
           single hydrophobic gene product forms a homodimer while
           the ABC protein represents a fusion of two
           nucleotide-binding domains.  However, it is assumed that
           two copies of the ABC domains are present in the
           assembled transporter..
          Length = 163

 Score = 86.6 bits (215), Expect = 5e-18
 Identities = 52/220 (23%), Positives = 89/220 (40%), Gaps = 60/220 (27%)

Query: 7   LLLQNVKHSYRQVGKPFPVLENVHLSLKKGEIVALVSPSGTGKSTILHIAGLLEVPDQGN 66
           L L+ +   +  V      L+ V LS+++GE+ AL+  +G GKST++ I   L  PD G 
Sbjct: 1   LELRGITKRFGGV----KALDGVSLSVRRGEVHALLGENGAGKSTLMKILSGLYKPDSGE 56

Query: 67  VIIANQLCNKLSDDKKSFLRCSKIGFVYQEHRLLMDFSVIENIIFPQIIAGINHKTAYQR 126
           +++  +  +  S       R + I  VYQ                               
Sbjct: 57  ILVDGKEVSFASPRDA---RRAGIAMVYQ------------------------------- 82

Query: 127 AMDLLSYMDMSQYANRRSSDISGGEQQRVAICRAIANKPLIILADEPTGNLDLKTAQQVF 186
                               +S GE+Q V I RA+A    +++ DEPT  L     +++F
Sbjct: 83  --------------------LSVGERQMVEIARALARNARLLILDEPTAALTPAEVERLF 122

Query: 187 SILKYLVVRSGLAALIATHNHDLASQM-DRQITIRDGMIA 225
            +++ L    G+A +  +H  D   ++ DR   +RDG + 
Sbjct: 123 KVIRRL-RAQGVAVIFISHRLDEVFEIADRVTVLRDGRVV 161


>gnl|CDD|31316 COG1119, ModF, ABC-type molybdenum transport system, ATPase
           component/photorepair protein PhrA [Inorganic ion
           transport and metabolism].
          Length = 257

 Score = 86.1 bits (213), Expect = 7e-18
 Identities = 54/215 (25%), Positives = 92/215 (42%), Gaps = 20/215 (9%)

Query: 24  PVLENVHLSLKKGEIVALVSPSGTGKSTILHIAGLLEVPDQGNVIIANQLCNKLSDDKKS 83
            +L ++   +  GE  A+V P+G GK+T+L +      P  G+V +  +       +   
Sbjct: 45  KILGDLSWQVNPGEHWAIVGPNGAGKTTLLSLLTGEHPPSSGDVTLLGR--RFGKGETIF 102

Query: 84  FLRCSKIGFVYQEHRLLMDFSVIENIIFPQIIA-------GINH----KTAYQRAMDLLS 132
            LR  +IG V     L   F V E +    ++        GI            A  LL 
Sbjct: 103 ELR-KRIGLV--SSELHERFRVRETVR--DVVLSGFFASIGIYQEDLTAEDLAAAQWLLE 157

Query: 133 YMDMSQYANRRSSDISGGEQQRVAICRAIANKPLIILADEPTGNLDLKTAQQVFSILKYL 192
            +     A+R    +S GEQ+RV I RA+   P +++ DEP   LDL   +Q+ + L+ L
Sbjct: 158 LLGAKHLADRPFGSLSQGEQRRVLIARALVKDPELLILDEPAQGLDLIAREQLLNRLEEL 217

Query: 193 VVR-SGLAALIATHN-HDLASQMDRQITIRDGMIA 225
                  A L  TH+  ++      ++ +++G + 
Sbjct: 218 AASPGAPALLFVTHHAEEIPPCFTHRLLLKEGEVV 252


>gnl|CDD|73011 cd03252, ABCC_Hemolysin, The ABC-transporter hemolysin B is a
           central component of the secretion machinery that
           translocates the toxin, hemolysin A, in a
           Sec-independent fashion across both membranes of E.
           coli.  The hemolysin A (HlyA) transport machinery is
           composed of the ATP-binding cassette (ABC) transporter
           HlyB located in the inner membrane, hemolysin D (HlyD),
           also anchored in the inner membrane, and TolC, which
           resides in the outer membrane.  HlyD apparently forms a
           continuous channel that bridges the entire periplasm,
           interacting with TolC and HlyB.  This arrangement
           prevents the appearance of periplasmic intermediates of
           HlyA during substrate transport.  Little is known about
           the molecular details of HlyA transport, but it is
           evident that ATP-hydrolysis by the ABC-transporter HlyB
           is a necessary source of energy..
          Length = 237

 Score = 86.1 bits (213), Expect = 8e-18
 Identities = 60/225 (26%), Positives = 110/225 (48%), Gaps = 18/225 (8%)

Query: 9   LQNVKHSYRQVGKPFPVLENVHLSLKKGEIVALVSPSGTGKSTILHIAGLLEVPDQGNVI 68
            ++V+  Y+  G    +L+N+ L +K GE+V +V  SG+GKST+  +     VP+ G V+
Sbjct: 3   FEHVRFRYKPDGPV--ILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVPENGRVL 60

Query: 69  IANQLCNKLSDDKKSFLRCSKIGFVYQEHRLLMDFSVIENIIFP-------QIIAGINHK 121
           +     + L+    ++LR  ++G V QE+ +L + S+ +NI          ++I      
Sbjct: 61  VDG---HDLALADPAWLR-RQVGVVLQEN-VLFNRSIRDNIALADPGMSMERVIEAAKLA 115

Query: 122 TAYQRAMDLLSYMDMSQYANRRSSDISGGEQQRVAICRAIANKPLIILADEPTGNLDLKT 181
            A+    +L    D       + + +SGG++QR+AI RA+ + P I++ DE T  LD ++
Sbjct: 116 GAHDFISELPEGYD--TIVGEQGAGLSGGQRQRIAIARALIHNPRILIFDEATSALDYES 173

Query: 182 AQQVFSILKYLVVRSGLAALIATHNHDLASQMDRQITIRDGMIAD 226
              +   +  +   +G   +I  H        DR I +  G I +
Sbjct: 174 EHAIMRNMHDIC--AGRTVIIIAHRLSTVKNADRIIVMEKGRIVE 216


>gnl|CDD|34862 COG5265, ATM1, ABC-type transport system involved in Fe-S cluster
           assembly, permease and ATPase components
           [Posttranslational modification, protein turnover,
           chaperones].
          Length = 497

 Score = 85.3 bits (211), Expect = 1e-17
 Identities = 61/208 (29%), Positives = 93/208 (44%), Gaps = 12/208 (5%)

Query: 24  PVLENVHLSLKKGEIVALVSPSGTGKSTILHIAGLLEVPDQGNVIIANQLCNKLSDDKKS 83
           P+L  +  ++  G+ VA+V  SG GKSTIL +       + G++ I  Q    + D  + 
Sbjct: 277 PILNGISFTIPLGKTVAIVGESGAGKSTILRLLFRFYDVNSGSITIDGQ---DIRDVTQQ 333

Query: 84  FLRCSKIGFVYQEHRLLMDFSVIENIIFPQIIAGINHKTAYQRAMDLLSYMD-----MSQ 138
            LR   IG V Q+  L  D ++  NI + +  A      A   A  +  ++         
Sbjct: 334 SLR-RAIGIVPQDTVLFND-TIAYNIKYGRPDATAEEVGAAAEAAQIHDFIQSLPEGYDT 391

Query: 139 YANRRSSDISGGEQQRVAICRAIANKPLIILADEPTGNLDLKTAQQVFSILKYLVVRSGL 198
               R   +SGGE+QRVAI R I   P I++ DE T  LD  T Q + + L+   V +G 
Sbjct: 392 GVGERGLKLSGGEKQRVAIARTILKNPPILILDEATSALDTHTEQAIQAALR--EVSAGR 449

Query: 199 AALIATHNHDLASQMDRQITIRDGMIAD 226
             L+  H        D  I + +G I +
Sbjct: 450 TTLVIAHRLSTIIDADEIIVLDNGRIVE 477


>gnl|CDD|143798 pfam00005, ABC_tran, ABC transporter.  ABC transporters for a large
           family of proteins responsible for translocation of a
           variety of compounds across biological membranes. ABC
           transporters are the largest family of proteins in many
           completely sequenced bacteria. ABC transporters are
           composed of two copies of this domain and two copies of
           a transmembrane domain pfam00664. These four domains may
           belong to a single polypeptide or belong in different
           polypeptide chains.
          Length = 119

 Score = 85.1 bits (211), Expect = 1e-17
 Identities = 42/127 (33%), Positives = 67/127 (52%), Gaps = 11/127 (8%)

Query: 50  STIL-HIAGLLEVPDQGNVIIANQLCNKLSDDKKSFLRCSKIGFVYQEHRLLMDFSVIEN 108
           ST+L  I GLL+ P  G +++  +    LS  K       +IG V+Q+ +L  + +V EN
Sbjct: 1   STLLKLITGLLQ-PTSGTILLDGEDGTDLSSRK---ALRKRIGVVFQDPQLFPELTVREN 56

Query: 109 IIFPQIIAGINHKTAYQRAMDLLSYMDMSQYANR-RSSDISGGEQQRVAICRAIANKPLI 167
           + F       +      RA + L  + +  + +R     +SGG++QRVAI RA+  KP +
Sbjct: 57  LFFGLRDKEAD-----ARAEEALERVGLPDFLDRSPVGTLSGGQKQRVAIARALLKKPKL 111

Query: 168 ILADEPT 174
           +L DEPT
Sbjct: 112 LLLDEPT 118


>gnl|CDD|35282 KOG0059, KOG0059, KOG0059, Lipid exporter ABCA1 and related
           proteins, ABC superfamily [Lipid transport and
           metabolism, General function prediction only].
          Length = 885

 Score = 84.7 bits (209), Expect = 2e-17
 Identities = 49/219 (22%), Positives = 97/219 (44%), Gaps = 8/219 (3%)

Query: 7   LLLQNVKHSYRQVGKPFPVLENVHLSLKKGEIVALVSPSGTGKSTILHIAGLLEVPDQGN 66
           L+L N+   Y   G     +  +  ++  GE   L+  +G GK+T   +      P  G 
Sbjct: 565 LVLNNLSKVY---GGKDGAVRGLSFAVPPGECFGLLGVNGAGKTTTFKMLTGETKPTSGE 621

Query: 67  VIIANQLCNKLSDDKKSFLRCSKIGFVYQEHRLLMDFSVIENIIFPQIIAGINHKTAYQR 126
            +I        +D ++   +   +G+  Q   L  + +  E++ F   + G+        
Sbjct: 622 ALIKGHDITVSTDFQQVRKQ---LGYCPQFDALWEELTGREHLEFYARLRGLPRSDIGSA 678

Query: 127 AMDLLSYMDMSQYANRRSSDISGGEQQRVAICRAIANKPLIILADEPTGNLDLKTAQQVF 186
              LL  + +  YAN++    SGG ++R++   A+   P +IL DEP+  LD K  + ++
Sbjct: 679 IEKLLRLVGLGPYANKQVRTYSGGNKRRLSFAIALIGDPSVILLDEPSTGLDPKARRHLW 738

Query: 187 SILKYLVVRSGLAALIATHNHDLASQMDRQITI-RDGMI 224
            I+  L  ++G A ++ +H+ + A  +  +  I   G +
Sbjct: 739 DIIARL-RKNGKAIILTSHSMEEAEALCTRTAIMVIGQL 776


>gnl|CDD|73057 cd03298, ABC_ThiQ_thiamine_transporter, ABC-type thiamine tranport
           system; part of the binding-protein-dependent transport
           system tbpA-thiPQ for thiamine and TPP.  Probably
           responsible for the translocation of thiamine across the
           membrane. ABC transporters are a large family of
           proteins involved in the transport of a wide variety of
           different compounds, like sugars, ions, peptides, and
           more complex organic molecules.  The nucleotide binding
           domain shows the highest similarity between all members
           of the family.  ABC transporters are a subset of
           nucleotide hydrolases that contain a signature motif,
           Q-loop, and H-loop/switch region, in addition to, the
           Walker A motif/P-loop and Walker B motif commonly found
           in a number of ATP- and GTP-binding and hydrolyzing
           proteins..
          Length = 211

 Score = 84.6 bits (209), Expect = 2e-17
 Identities = 53/197 (26%), Positives = 99/197 (50%), Gaps = 9/197 (4%)

Query: 31  LSLKKGEIVALVSPSGTGKSTILHIAGLLEVPDQGNVIIANQLCNKLSDDKKSFLRCSKI 90
           L+  +GEI A+V PSG+GKST+L++    E P  G V+I         D   +      +
Sbjct: 19  LTFAQGEITAIVGPSGSGKSTLLNLIAGFETPQSGRVLINGV------DVTAAPPADRPV 72

Query: 91  GFVYQEHRLLMDFSVIENIIFPQIIAGINHKTAYQRAMD-LLSYMDMSQYANRRSSDISG 149
             ++QE+ L    +V +N+    +  G+      ++A++  L+ + ++    R   ++SG
Sbjct: 73  SMLFQENNLFAHLTVEQNVGL-GLSPGLKLTAEDRQAIEVALARVGLAGLEKRLPGELSG 131

Query: 150 GEQQRVAICRAIANKPLIILADEPTGNLDLKTAQQVFSILKYLVVRSGLAALIATHNHDL 209
           GE+QRVA+ R +     ++L DEP   LD     ++  ++  L   + +  L+ TH  + 
Sbjct: 132 GERQRVALARVLVRDKPVLLLDEPFAALDPALRAEMLDLVLDLHAETKMTVLMVTHQPED 191

Query: 210 ASQM-DRQITIRDGMIA 225
           A ++  R + + +G IA
Sbjct: 192 AKRLAQRVVFLDNGRIA 208


>gnl|CDD|73007 cd03248, ABCC_TAP, TAP, the Transporter Associated with Antigen
           Processing; TAP is essential for peptide delivery from
           the cytosol into the lumen of the endoplasmic reticulum
           (ER), where these peptides are loaded on major
           histocompatibility complex (MHC) I molecules.  Loaded
           MHC I leave the ER and display their antigenic cargo on
           the cell surface to cytotoxic T cells.  Subsequently,
           virus-infected or malignantly transformed cells can be
           eliminated.  TAP belongs to the large family of
           ATP-binding cassette (ABC) transporters, which
           translocate a vast variety of solutes across membranes..
          Length = 226

 Score = 84.2 bits (208), Expect = 3e-17
 Identities = 64/222 (28%), Positives = 104/222 (46%), Gaps = 15/222 (6%)

Query: 9   LQNVKHSYRQVGKP-FPVLENVHLSLKKGEIVALVSPSGTGKSTILHIAGLLEVPDQGNV 67
            QNV  +Y    +P   VL++V  +L  GE+ ALV PSG+GKST++ +      P  G V
Sbjct: 14  FQNVTFAYPT--RPDTLVLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQPQGGQV 71

Query: 68  IIANQLCNKLSDDKKSFLRCSKIGFVYQEHRLLMDFSVIENIIFPQIIAGINHKTAYQR- 126
           ++  +    +S  +  +L  SK+  V QE  +L   S+ +NI +              + 
Sbjct: 72  LLDGK---PISQYEHKYLH-SKVSLVGQE-PVLFARSLQDNIAYGLQSCSFECVKEAAQK 126

Query: 127 --AMDLLSYMDMSQY--ANRRSSDISGGEQQRVAICRAIANKPLIILADEPTGNLDLKTA 182
             A   +S +          + S +SGG++QRVAI RA+   P +++ DE T  LD ++ 
Sbjct: 127 AHAHSFISELASGYDTEVGEKGSQLSGGQKQRVAIARALIRNPQVLILDEATSALDAESE 186

Query: 183 QQVFSILKYLVVRSGLAALIATHNHDLASQMDRQITIRDGMI 224
           QQV   L     R  +  L+  H      + D+ + +  G I
Sbjct: 187 QQVQQALYDWPERRTV--LVIAHRLSTVERADQILVLDGGRI 226


>gnl|CDD|34224 COG4586, COG4586, ABC-type uncharacterized transport system, ATPase
           component [General function prediction only].
          Length = 325

 Score = 83.8 bits (207), Expect = 3e-17
 Identities = 52/221 (23%), Positives = 98/221 (44%), Gaps = 7/221 (3%)

Query: 8   LLQNVKHSYRQVGKPFPVLENVHLSLKKGEIVALVSPSGTGKSTILHIAGLLEVPDQGNV 67
           L  ++ H + +  +    ++++   + KGEIV  +  +G GKST L +   L +P  G V
Sbjct: 22  LKGSLNHFFHRKERSIEAVQDISFEIPKGEIVGFLGANGAGKSTTLKMLTGLLLPTSGKV 81

Query: 68  IIANQLCNKLSDDKKSFLRCSKIGFVY-QEHRLLMDFSVIENIIFPQIIAGINHKTAYQR 126
            +  +        ++ +LR   IG V  Q+ +L  D   ++++   ++I  I      +R
Sbjct: 82  RVNGKDP---FRRREEYLR--SIGLVMGQKLQLWWDLPALDSLEVLKLIYEIPDDEFAER 136

Query: 127 AMDLLSYMDMSQYANRRSSDISGGEQQRVAICRAIANKPLIILADEPTGNLDLKTAQQVF 186
              L   +D+  +       +S G++ R  +  A+ + P ++  DEPT  LD+     + 
Sbjct: 137 LDFLTEILDLEGFLKWPVRKLSLGQRMRAELAAALLHPPKVLFLDEPTVGLDVNAQANIR 196

Query: 187 SILKYLVVRSGLAALIATHN-HDLASQMDRQITIRDGMIAD 226
             LK          L+ TH   D+A+  DR + I  G +  
Sbjct: 197 EFLKEYNEERQATVLLTTHIFDDIATLCDRVLLIDQGQLVF 237


>gnl|CDD|33903 COG4152, COG4152, ABC-type uncharacterized transport system, ATPase
           component [General function prediction only].
          Length = 300

 Score = 83.0 bits (205), Expect = 6e-17
 Identities = 42/205 (20%), Positives = 93/205 (45%), Gaps = 18/205 (8%)

Query: 23  FPVLENVHLSLKKGEIVALVSPSGTGKSTILH-IAGLLEVPDQGNVIIANQLCNKLSDDK 81
              ++N+   +  GEI  L+ P+G GK+T    I GLLE P +G +       ++   ++
Sbjct: 15  KKAVDNISFEVPPGEIFGLLGPNGAGKTTTFRMILGLLE-PTEGEITWNGGPLSQEIKNR 73

Query: 82  KSFLRCSKIGFVYQEHRLLMDFSVIENIIFPQIIAGINHKTAYQRAMDLLSYMDMSQYAN 141
                   IG++ +E  L    +V + + +   + G+      ++    L  +++     
Sbjct: 74  --------IGYLPEERGLYPKMTVEDQLKYLAELKGMPKAEIQKKLQAWLERLEIVGKKT 125

Query: 142 RRSSDISGGEQQRVAICRAIANKPLIILADEPTGNLDLKTAQQVFSILKYLVVR---SGL 198
           ++  ++S G QQ++    A+ ++P +++ DEP   LD    +    +LK  +      G 
Sbjct: 126 KKIKELSKGNQQKIQFISAVIHEPELLILDEPFSGLDPVNVE----LLKDAIFELKEEGA 181

Query: 199 AALIATHNHDLASQM-DRQITIRDG 222
             + ++H  +   ++ DR + ++ G
Sbjct: 182 TIIFSSHRMEHVEELCDRLLMLKKG 206


>gnl|CDD|72972 cd03213, ABCG_EPDR, ABCG transporters are involved in eye pigment
           (EP) precursor transport, regulation of
           lipid-trafficking mechanisms, and pleiotropic drug
           resistance (DR).  DR is a well-described phenomenon
           occurring in fungi and shares several similarities with
           processes in bacteria and higher eukaryotes.  Compared
           to other members of the ABC transporter subfamilies, the
           ABCG transporter family is composed of proteins that
           have an ATP-binding cassette domain at the N-terminus
           and a TM (transmembrane) domain at the C-terminus..
          Length = 194

 Score = 79.0 bits (195), Expect = 9e-16
 Identities = 57/185 (30%), Positives = 86/185 (46%), Gaps = 39/185 (21%)

Query: 23  FPVLENVHLSLKKGEIVALVSPSGTGKSTILHI-AGLLEVP-DQGNVIIANQLCNKLSDD 80
             +L+NV    K GE+ A++ PSG GKST+L+  AG        G V+I     N    D
Sbjct: 22  KQLLKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGRRTGLGVSGEVLI-----NGRPLD 76

Query: 81  KKSFLRCSKIGFVYQEHRLLMDFSVIENIIFPQIIAGINHKTAYQRAMDLLSYMDMSQYA 140
           K+SF +   IG+V Q+  L    +V E ++F                            A
Sbjct: 77  KRSFRKI--IGYVPQDDILHPTLTVRETLMFA---------------------------A 107

Query: 141 NRRSSDISGGEQQRVAICRAIANKPLIILADEPTGNLDLKTAQQVFSILKYLVVRSGLAA 200
             R   +SGGE++RV+I   + + P ++  DEPT  LD  +A QV S+L+ L   +G   
Sbjct: 108 KLRG--LSGGERKRVSIALELVSNPSLLFLDEPTSGLDSSSALQVMSLLRRL-ADTGRTI 164

Query: 201 LIATH 205
           + + H
Sbjct: 165 ICSIH 169


>gnl|CDD|73009 cd03250, ABCC_MRP_domain1, Domain 1 of the ABC subfamily C.  This
           family is also known as MRP (mulrtidrug
           resisitance-associated protein).  Some of the MRP
           members have five additional transmembrane segments in
           their N-terminas, but the function of these additional
           membrane-spanning domains is not clear.  The MRP was
           found in the multidrug-resisting lung cancer cell in
           which p-glycoprotein was not overexpressed. MRP exports
           glutathione by drug stimulation, as well as, certain
           substrates in conjugated forms with anions, such as
           glutathione, glucuronate, and sulfate..
          Length = 204

 Score = 78.6 bits (194), Expect = 1e-15
 Identities = 49/209 (23%), Positives = 98/209 (46%), Gaps = 28/209 (13%)

Query: 21  KPFPVLENVHLSLKKGEIVALVSPSGTGKSTILHIAGLLEVPDQGNVIIANQLCNKLSDD 80
           +    L++++L + KGE+VA+V P G+GKS++L                 + L  +L   
Sbjct: 16  ETSFTLKDINLEVPKGELVAIVGPVGSGKSSLL-----------------SALLGELEKL 58

Query: 81  KKSFLRCSKIGFVYQEHRLLMDFSVIENIIF-----PQIIAGINHKTAYQRAMDLLSYMD 135
             S      I +V QE   + + ++ ENI+F      +    +    A +  +++L   D
Sbjct: 59  SGSVSVPGSIAYVSQE-PWIQNGTIRENILFGKPFDEERYEKVIKACALEPDLEILPDGD 117

Query: 136 MSQYANRRSSDISGGEQQRVAICRAIANKPLIILADEPTGNLDLKTAQQVFS--ILKYLV 193
           +++   +  + +SGG++QR+++ RA+ +   I L D+P   +D    + +F   IL  L 
Sbjct: 118 LTEIGEKGIN-LSGGQKQRISLARAVYSDADIYLLDDPLSAVDAHVGRHIFENCILGLL- 175

Query: 194 VRSGLAALIATHNHDLASQMDRQITIRDG 222
             +    ++ TH   L    D+ + + +G
Sbjct: 176 -LNNKTRILVTHQLQLLPHADQIVVLDNG 203


>gnl|CDD|72974 cd03215, ABC_Carb_Monos_II, This family represents domain II of the
           carbohydrate uptake proteins that transport only
           monosaccharides (Monos).  The Carb_Monos family is
           involved in the uptake of monosaccharides, such as
           pentoses (such as xylose, arabinose, and ribose) and
           hexoses (such as xylose, arabinose, and ribose), that
           cannot be broken down to simple sugars by hydrolysis.
           In members of Carb_Monos family the single hydrophobic
           gene product forms a homodimer, while the ABC protein
           represents a fusion of two nucleotide-binding domains.
           However, it is assumed that two copies of the ABC
           domains are present in the assembled transporter..
          Length = 182

 Score = 78.2 bits (193), Expect = 2e-15
 Identities = 42/204 (20%), Positives = 85/204 (41%), Gaps = 40/204 (19%)

Query: 25  VLENVHLSLKKGEIVALVSPSGTGKSTILH-IAGLLEVPDQGNVIIANQLCNKLSDDKKS 83
            + +V   ++ GEIV +    G G++ +   + GL   P  G + +  +    ++     
Sbjct: 15  AVRDVSFEVRAGEIVGIAGLVGNGQTELAEALFGLRP-PASGEITLDGK---PVTRRSPR 70

Query: 84  FLRCSKIGFVYQEHR---LLMDFSVIENIIFPQIIAGINHKTAYQRAMDLLSYMDMSQYA 140
               + I +V ++ +   L++D SV ENI    ++                         
Sbjct: 71  DAIRAGIAYVPEDRKREGLVLDLSVAENIALSSLL------------------------- 105

Query: 141 NRRSSDISGGEQQRVAICRAIANKPLIILADEPTGNLDLKTAQQVFSILKYLVVRSGLAA 200
                  SGG QQ+V + R +A  P +++ DEPT  +D+    +++ +++ L        
Sbjct: 106 -------SGGNQQKVVLARWLARDPRVLILDEPTRGVDVGAKAEIYRLIRELADAGKAVL 158

Query: 201 LIATHNHDLASQMDRQITIRDGMI 224
           LI++   +L    DR + + +G I
Sbjct: 159 LISSELDELLGLCDRILVMYEGRI 182


>gnl|CDD|35277 KOG0054, KOG0054, KOG0054, Multidrug resistance-associated
           protein/mitoxantrone resistance protein, ABC superfamily
           [Secondary metabolites biosynthesis, transport and
           catabolism].
          Length = 1381

 Score = 76.5 bits (188), Expect = 6e-15
 Identities = 53/211 (25%), Positives = 101/211 (47%), Gaps = 31/211 (14%)

Query: 22  PFPVLENVHLSLKKGEIVALVSPSGTGKSTILH-IAGLLEVPDQGNVIIANQLCNKLSDD 80
           P P L++++  +KKG++VA+V P G+GKS++L  I G +     G+V +           
Sbjct: 533 PEPTLKDINFEIKKGQLVAVVGPVGSGKSSLLSAILGEMP-KLSGSVAV----------- 580

Query: 81  KKSFLRCSKIGFVYQEHRLLMDFSVIENIIF-----PQIIAGINHKTAYQRAMDLLSYMD 135
                    + +V Q+  +    +V ENI+F      +    +    A ++ +++L + D
Sbjct: 581 ------NGSVAYVPQQPWIQNG-TVRENILFGSPYDEERYDKVIKACALKKDLEILPFGD 633

Query: 136 MSQYANRRSSDISGGEQQRVAICRAIANKPLIILADEPTGNLDLKTAQQVFS--ILKYLV 193
           +++   R  + +SGG++QR+++ RA+     I L D+P   +D    + +F   I   L 
Sbjct: 634 LTEIGERGIN-LSGGQKQRISLARAVYQDADIYLLDDPLSAVDAHVGKHIFEECIRGLL- 691

Query: 194 VRSGLAALIATHNHDLASQMDRQITIRDGMI 224
              G   ++ TH        D+ I ++DG I
Sbjct: 692 --RGKTVILVTHQLQFLPHADQIIVLKDGKI 720



 Score = 47.6 bits (113), Expect = 3e-06
 Identities = 38/185 (20%), Positives = 78/185 (42%), Gaps = 19/185 (10%)

Query: 9    LQNVKHSYRQVGKPFPVLENVHLSLKKGEIVALVSPSGTGKSTILHIAGLLEVPDQGNVI 68
             +++   YR       VL+ +  ++K GE V +V  +G GKS+++     L  P +G ++
Sbjct: 1141 FEDLSLRYRPNLPL--VLKGISFTIKPGEKVGIVGRTGAGKSSLILALFRLVEPAEGEIL 1198

Query: 69   IANQLCNKLSDDKKSFLRCSKIGFVYQEHRLLMDFSVIENI-IFPQI-------IAGINH 120
            I     +K+       LR S++  + Q+  L    +V  N+  F +              
Sbjct: 1199 IDGVDISKIG---LHDLR-SRLSIIPQDPVLFSG-TVRFNLDPFDEYSDDEIWEALERCQ 1253

Query: 121  KTAYQRAMDLLSYMDMSQYANRRSSDISGGEQQRVAICRAIANKPLIILADEPTGNLDLK 180
                  ++       +    +    + S G++Q + + RA+  K  I++ DE T ++D +
Sbjct: 1254 LKDVVSSLPG----GLDSEVSEGGENFSVGQRQLLCLARALLRKSKILVLDEATASVDPE 1309

Query: 181  TAQQV 185
            T   +
Sbjct: 1310 TDALI 1314


>gnl|CDD|31298 COG1101, PhnK, ABC-type uncharacterized transport system, ATPase
           component [General function prediction only].
          Length = 263

 Score = 76.1 bits (187), Expect = 7e-15
 Identities = 60/214 (28%), Positives = 100/214 (46%), Gaps = 19/214 (8%)

Query: 24  PVLENVHLSLKKGEIVALVSPSGTGKSTILH-IAGLLEVPDQGNVIIANQLCNKLSDDKK 82
             L  + L + +G+ V ++  +G GKST+L+ IAG L  P  G ++I      K S  K 
Sbjct: 20  RALNGLSLEIAEGDFVTVIGSNGAGKSTLLNAIAGDL-KPTSGQILIDGVDVTKKSVAK- 77

Query: 83  SFLRCSKIGFVYQ--EHRLLMDFSVIENIIFPQI---IAGINHKTAYQRA---MDLLSYM 134
              R + +  V+Q        + ++ EN+   +      G++     +R     + L+ +
Sbjct: 78  ---RANLLARVFQDPLAGTAPELTIEENLALAESRGKKRGLSSALNERRRSSFRERLARL 134

Query: 135 DMSQYANRRSSDI---SGGEQQRVAICRAIANKPLIILADEPTGNLDLKTAQQVFSILKY 191
            +    NR S  I   SGG++Q +++  A  + P I+L DE T  LD KTA+ V  +   
Sbjct: 135 GLG-LENRLSDRIGLLSGGQRQALSLLMATLHPPKILLLDEHTAALDPKTAEFVMELTAK 193

Query: 192 LVVRSGLAALIATHNHDLASQM-DRQITIRDGMI 224
           +V    L  L+ THN + A    +R I +  G I
Sbjct: 194 IVEEHKLTTLMVTHNMEDALDYGNRLIMLHSGKI 227


>gnl|CDD|73006 cd03247, ABCC_cytochrome_bd, The CYD subfamily implicated in
           cytochrome bd biogenesis.  The CydC and CydD proteins
           are important for the formation of cytochrome bd
           terminal oxidase of E. coli and it has been proposed
           that they were necessary for biosynthesis of the
           cytochrome bd quinol oxidase and for periplasmic c-type
           cytochromes.  CydCD were proposed to determine a
           heterooligomeric complex important for heme export into
           the periplasm or to be involved in the maintenance of
           the proper redox state of the periplasmic space.  In
           Bacillus subtilius, the absence of CydCD does not affect
           the presence of halo-cytochrome c in the membrane and
           this observation suggests that CydCD proteins are not
           involved in the export of heme in this organism..
          Length = 178

 Score = 74.5 bits (183), Expect = 2e-14
 Identities = 62/219 (28%), Positives = 95/219 (43%), Gaps = 46/219 (21%)

Query: 7   LLLQNVKHSYRQVGKPFPVLENVHLSLKKGEIVALVSPSGTGKSTILH-IAGLLEVPDQG 65
           L + NV  SY    +   VL+N+ L LK+GE +AL+  SG+GKST+L  + G L+ P QG
Sbjct: 1   LSINNVSFSYP--EQEQQVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLK-PQQG 57

Query: 66  NVIIANQLCNKLSDDKKSFLRCSKIGFVYQEHRLLMDFSVIENIIFPQIIAGINHKTAYQ 125
            + +     + L          S I  + Q   L  D ++  N+                
Sbjct: 58  EITLDGVPVSDLEK-----ALSSLISVLNQRPYLF-DTTLRNNL---------------- 95

Query: 126 RAMDLLSYMDMSQYANRRSSDISGGEQQRVAICRAIANKPLIILADEPTGNLDLKTAQQV 185
                           RR    SGGE+QR+A+ R +     I+L DEPT  LD  T +Q+
Sbjct: 96  ---------------GRR---FSGGERQRLALARILLQDAPIVLLDEPTVGLDPITERQL 137

Query: 186 FSILKYLVVRSGLAALIATHNHDLASQMDRQITIRDGMI 224
            S++    V      +  TH+      MD+ + + +G I
Sbjct: 138 LSLI--FEVLKDKTLIWITHHLTGIEHMDKILFLENGKI 174


>gnl|CDD|33911 COG4170, SapD, ABC-type antimicrobial peptide transport system,
           ATPase component [Defense mechanisms].
          Length = 330

 Score = 74.7 bits (183), Expect = 2e-14
 Identities = 56/218 (25%), Positives = 104/218 (47%), Gaps = 25/218 (11%)

Query: 22  PFPVLENVHLSLKKGEIVALVSPSGTGKSTILHIAGLLEVPDQGNVIIANQL------CN 75
               ++ V ++L +GEI  LV  SG+GKS I     +  V      + A+++        
Sbjct: 19  WVKAVDRVSMTLNEGEIRGLVGESGSGKSLIAKA--ICGVNKDNWRVTADRMRFDDIDLL 76

Query: 76  KLSDDKKSFLRCSKIGFVYQEHRLLMDFSVIENIIFPQIIAGINHKT-----------AY 124
           +LS  ++  L    +  ++QE +  +D S     +  Q+I  I   T             
Sbjct: 77  RLSPRERRKLVGHNVSMIFQEPQSCLDPS---ERVGRQLIQNIPAWTYKGRWWQRFGWRK 133

Query: 125 QRAMDLLSYMDMSQYANRRSS---DISGGEQQRVAICRAIANKPLIILADEPTGNLDLKT 181
           +RA++LL  + +  + +   S   +++ GE Q+V I  A+AN+P +++ADEPT +++  T
Sbjct: 134 RRAIELLHRVGIKDHKDIMRSYPYELTEGECQKVMIAIALANQPRLLIADEPTNSMEPTT 193

Query: 182 AQQVFSILKYLVVRSGLAALIATHNHDLASQMDRQITI 219
             Q+F +L  L   S    L+ +H+  + SQ   +I +
Sbjct: 194 QAQIFRLLSRLNQNSNTTILLISHDLQMISQWADKINV 231


>gnl|CDD|31329 COG1134, TagH, ABC-type polysaccharide/polyol phosphate transport
           system, ATPase component [Carbohydrate transport and
           metabolism / Cell envelope biogenesis, outer membrane].
          Length = 249

 Score = 73.7 bits (181), Expect = 4e-14
 Identities = 47/205 (22%), Positives = 86/205 (41%), Gaps = 20/205 (9%)

Query: 23  FPVLENVHLSLKKGEIVALVSPSGTGKSTILH-IAGLLEVPDQGNVIIANQLCNKLSDDK 81
           F  L+++   + KGE V ++  +G GKST+L  IAG+ + P  G V +  ++   +    
Sbjct: 40  FWALKDISFEIYKGERVGIIGHNGAGKSTLLKLIAGIYK-PTSGKVKVTGKVAPLIELG- 97

Query: 82  KSFLRCSKIGFVYQEHRLLMDFSVIENIIFPQIIAGINHKTAYQRAMDLLSYMDMSQYAN 141
                    GF         + +  ENI    +I G+  K   ++  +++ + ++  + +
Sbjct: 98  --------AGFD-------PELTGRENIYLRGLILGLTRKEIDEKVDEIIEFAELGDFID 142

Query: 142 RRSSDISGGEQQRVAICRAIANKPLIILADEPTGNLDLKTAQQVFSILKYLVVRSGLAAL 201
           +     S G   R+A   A   +P I+L DE     D    ++    L  L V      +
Sbjct: 143 QPVKTYSSGMYARLAFSVATHVEPDILLLDEVLAVGDAAFQEKCLERLNEL-VEKNKTIV 201

Query: 202 IATHNHDLASQM-DRQITIRDGMIA 225
           + +H+     Q  DR I +  G I 
Sbjct: 202 LVSHDLGAIKQYCDRAIWLEHGQIR 226


>gnl|CDD|72979 cd03220, ABC_KpsT_Wzt, ABC_KpsT_Wzt   The KpsT/Wzt ABC transporter
           subfamily is involved in extracellular polysaccharide
           export.  Among the variety of membrane-linked or
           extracellular polysaccharides excreted by bacteria, only
           capsular polysaccharides, lipopolysaccharides, and
           teichoic acids have been shown to be exported by ABC
           transporters.  A typical system is made of a conserved
           integral membrane and an ABC.  In addition to these
           proteins, capsular polysaccharide exporter systems
           require two 'accessory' proteins to perform their
           function: a periplasmic (E.coli) or a lipid-anchored
           outer membrane protein called OMA (Neisseria
           meningitidis and Haemophilus influenzae) and a
           cytoplasmic membrane protein MPA2..
          Length = 224

 Score = 73.7 bits (181), Expect = 4e-14
 Identities = 44/206 (21%), Positives = 90/206 (43%), Gaps = 18/206 (8%)

Query: 21  KPFPVLENVHLSLKKGEIVALVSPSGTGKSTILHIAGLLEVPDQGNVIIANQLCNKLSDD 80
             F  L++V   + +GE + L+  +G GKST+L +   +  PD G V +  ++ + L   
Sbjct: 33  GEFWALKDVSFEVPRGERIGLIGRNGAGKSTLLRLLAGIYPPDSGTVTVRGRVSSLLG-- 90

Query: 81  KKSFLRCSKIGFVYQEHRLLMDFSVIENIIFPQIIAGINHKTAYQRAMDLLSYMDMSQYA 140
                     GF         + +  ENI     + G++ K   ++  +++ + ++  + 
Sbjct: 91  -------LGGGF-------NPELTGRENIYLNGRLLGLSRKEIDEKIDEIIEFSELGDFI 136

Query: 141 NRRSSDISGGEQQRVAICRAIANKPLIILADEPTGNLDLKTAQQVFSILKYLVVRSGLAA 200
           +      S G + R+A   A A +P I+L DE     D    ++    L+ L ++ G   
Sbjct: 137 DLPVKTYSSGMKARLAFAIATALEPDILLIDEVLAVGDAAFQEKCQRRLREL-LKQGKTV 195

Query: 201 LIATHNHDLASQM-DRQITIRDGMIA 225
           ++ +H+     ++ DR + +  G I 
Sbjct: 196 ILVSHDPSSIKRLCDRALVLEKGKIR 221


>gnl|CDD|32537 COG2401, COG2401, ABC-type ATPase fused to a predicted
           acetyltransferase domain [General function prediction
           only].
          Length = 593

 Score = 73.1 bits (179), Expect = 5e-14
 Identities = 45/200 (22%), Positives = 91/200 (45%), Gaps = 18/200 (9%)

Query: 24  PVLENVHLSLKKGEIVALVSPSGTGKSTILH-IAG-LLEVPDQGNVIIANQLCNKLSDDK 81
            VL N++L +K G++VA+V  SG GK+T+L  I G      ++     + ++  ++  + 
Sbjct: 397 YVLRNLNLEIKPGDVVAVVGQSGAGKTTLLRMILGAQKGRGEEKYRPDSGKV--EVPKNT 454

Query: 82  KSFLRCSKIGFVYQEHRLLMDFSVIENIIFPQIIAGINHKTAYQRAMDLLSYMDMSQYAN 141
            S L   +            +    E  I   + +      A    ++     D   Y  
Sbjct: 455 VSALIPGEY-----------EPEFGEVTILEHLRSKTGDLNAAVEILNRAGLSDAVLY-R 502

Query: 142 RRSSDISGGEQQRVAICRAIANKPLIILADEPTGNLDLKTAQQVFSILKYLVVRSGLAAL 201
           R+ S++S G+++R  + + +A +P ++L DE   +LD  TA +V   +  L   +G+  +
Sbjct: 503 RKFSELSTGQKERAKLAKLLAERPNVLLIDEFAAHLDELTAVRVARKISELAREAGITLI 562

Query: 202 IATHNHDLASQM--DRQITI 219
           + TH  ++ + +  D  I +
Sbjct: 563 VVTHRPEVGNALRPDTLILV 582


>gnl|CDD|33889 COG4133, CcmA, ABC-type transport system involved in cytochrome c
           biogenesis, ATPase component [Posttranslational
           modification, protein turnover, chaperones].
          Length = 209

 Score = 72.2 bits (177), Expect = 1e-13
 Identities = 46/187 (24%), Positives = 85/187 (45%), Gaps = 17/187 (9%)

Query: 23  FPVLENVHLSLKKGEIVALVSPSGTGKSTILHI-AGLLEVPDQGNVIIANQLCNKLSDDK 81
             +  ++  +L  GE + +  P+G GK+T+L I AGLL  PD G V    +    + + +
Sbjct: 15  RTLFSDLSFTLNAGEALQITGPNGAGKTTLLRILAGLLR-PDAGEVYWQGE---PIQNVR 70

Query: 82  KSFLR-CSKIGFVYQEHRLLM--DFSVIENIIFPQIIAGINHKTAYQRAMDLLSYMDMSQ 138
           +S+ +    +G     H+  +  + + +EN+ F Q   G  +      A   L+ + ++ 
Sbjct: 71  ESYHQALLYLG-----HQPGIKTELTALENLHFWQRFHGSGNAATIWEA---LAQVGLAG 122

Query: 139 YANRRSSDISGGEQQRVAICRAIANKPLIILADEPTGNLDLKTAQQVFSILKYLVVRSGL 198
             +     +S G+Q+RVA+ R   +   + + DEP   LD K    + + L       G 
Sbjct: 123 LEDLPVGQLSAGQQRRVALARLWLSPAPLWILDEPFTALD-KEGVALLTALMAAHAAQGG 181

Query: 199 AALIATH 205
             L+ TH
Sbjct: 182 IVLLTTH 188


>gnl|CDD|72976 cd03217, ABC_FeS_Assembly, ABC-type transport system involved in
           Fe-S cluster assembly, ATPase component.  Biosynthesis
           of iron-sulfur clusters (Fe-S) depends on multiprotein
           systems.  The SUF system of E. coli and Erwinia
           chrysanthemi is important for Fe-S biogenesis under
           stressful conditions.  The SUF system is made of six
           proteins: SufC is an atypical cytoplasmic ABC-ATPase,
           which forms a complex with SufB and SufD; SufA plays the
           role of a scaffold protein for assembly of iron-sulfur
           clusters and delivery to target proteins; SufS is a
           cysteine desulfurase which mobilizes the sulfur atom
           from cysteine and provides it to the cluster; SufE has
           no associated function yet..
          Length = 200

 Score = 69.7 bits (171), Expect = 6e-13
 Identities = 53/205 (25%), Positives = 91/205 (44%), Gaps = 39/205 (19%)

Query: 25  VLENVHLSLKKGEIVALVSPSGTGKSTILH-IAGLLEV-PDQGNVIIANQLCNKLSDDKK 82
           +L+ V+L++KKGE+ AL+ P+G+GKST+   I G  +    +G ++   +    L  +++
Sbjct: 15  ILKGVNLTIKKGEVHALMGPNGSGKSTLAKTIMGHPKYEVTEGEILFKGEDITDLPPEER 74

Query: 83  SFLRCSKIGFVYQEHRLLMDFSVIENIIFPQIIAGINHKTAYQRAMDLLSYMDMSQYANR 142
           + L    I   +Q                P  I G+       +  D L Y++       
Sbjct: 75  ARL---GIFLAFQY---------------PPEIPGV-------KNADFLRYVNEG----- 104

Query: 143 RSSDISGGEQQRVAICRAIANKPLIILADEPTGNLDLKTAQQVFSILKYLVVRSGLAALI 202
                SGGE++R  I + +  +P + + DEP   LD+   + V  ++  L    G + LI
Sbjct: 105 ----FSGGEKKRNEILQLLLLEPDLAILDEPDSGLDIDALRLVAEVINKL-REEGKSVLI 159

Query: 203 ATHNHDLASQM--DRQITIRDGMIA 225
            TH   L   +  DR   + DG I 
Sbjct: 160 ITHYQRLLDYIKPDRVHVLYDGRIV 184


>gnl|CDD|34241 COG4618, ArpD, ABC-type protease/lipase transport system, ATPase
           and permease components [General function prediction
           only].
          Length = 580

 Score = 69.5 bits (170), Expect = 8e-13
 Identities = 52/214 (24%), Positives = 101/214 (47%), Gaps = 15/214 (7%)

Query: 20  GKPFPVLENVHLSLKKGEIVALVSPSGTGKSTILHIAGLLEVPDQGNVIIANQLCNKLSD 79
           G+  P+L+ +  +L+ GE + ++ PSG+GKST+  +   +  P  G+V +      +   
Sbjct: 346 GQKKPILKGISFALQAGEALGIIGPSGSGKSTLARLLVGIWPPTSGSVRLDGADLRQW-- 403

Query: 80  DKKSFLRCSKIGFVYQEHRLLMDFSVIENIIF-------PQIIAGINHKTAYQRAMDLLS 132
           D++   R   IG++ Q+  L  D ++ ENI          ++I     + A    + L  
Sbjct: 404 DREQLGR--HIGYLPQDVEL-FDGTIAENIARFGEEADPEKVIEAA--RLAGVHELILRL 458

Query: 133 YMDMSQYANRRSSDISGGEQQRVAICRAIANKPLIILADEPTGNLDLKTAQQVFSILKYL 192
                       + +SGG++QR+A+ RA+   P +++ DEP  NLD +    + + +   
Sbjct: 459 PQGYDTRIGEGGATLSGGQRQRIALARALYGDPFLVVLDEPNSNLDSEGEAALAAAILAA 518

Query: 193 VVRSGLAALIATHNHDLASQMDRQITIRDGMIAD 226
             R G   ++  H     + +D+ + ++DG IA 
Sbjct: 519 KAR-GGTVVVIAHRPSALASVDKILVLQDGRIAA 551


>gnl|CDD|30745 COG0396, SufC, ABC-type transport system involved in Fe-S cluster
           assembly, ATPase component [Posttranslational
           modification, protein turnover, chaperones].
          Length = 251

 Score = 67.5 bits (165), Expect = 3e-12
 Identities = 55/230 (23%), Positives = 106/230 (46%), Gaps = 27/230 (11%)

Query: 12  VKHSYRQVGKPFPVLENVHLSLKKGEIVALVSPSGTGKSTILH-IAGLLEV-PDQGNVII 69
           +K  + +V     +L+ V+L++K+GE+ A++ P+G+GKST+ + I G  +    +G ++ 
Sbjct: 6   IKDLHVEVEGKKEILKGVNLTVKEGEVHAIMGPNGSGKSTLAYTIMGHPKYEVTEGEILF 65

Query: 70  ANQLCNKLSDDKKSFLRCSKIGFVYQEHRLLMDFSVIENIIFPQIIAGINHKTAY----- 124
             +   +LS D+++      I   +Q     ++   + N  F  + A +N +        
Sbjct: 66  DGEDILELSPDERARA---GIFLAFQYP---VEIPGVTNSDF--LRAAMNARRGARGILP 117

Query: 125 ------QRAMDLLSYMDMSQYANRRSSD-ISGGEQQRVAICRAIANKPLIILADEPTGNL 177
                 +   +LL  +D   +  R  ++  SGGE++R  I + +  +P + + DEP   L
Sbjct: 118 EFIKELKEKAELLG-LDEE-FLERYVNEGFSGGEKKRNEILQLLLLEPKLAILDEPDSGL 175

Query: 178 DLKTAQQVFSILKYLVVRSGLAALIATHNHDLA--SQMDRQITIRDGMIA 225
           D+   + V   +  L    G   LI TH   L    + D+   + DG I 
Sbjct: 176 DIDALKIVAEGINAL-REEGRGVLIITHYQRLLDYIKPDKVHVLYDGRIV 224


>gnl|CDD|35288 KOG0065, KOG0065, KOG0065, Pleiotropic drug resistance proteins
            (PDR1-15), ABC superfamily [Secondary metabolites
            biosynthesis, transport and catabolism].
          Length = 1391

 Score = 67.2 bits (164), Expect = 4e-12
 Identities = 52/209 (24%), Positives = 99/209 (47%), Gaps = 18/209 (8%)

Query: 25   VLENVHLSLKKGEIVALVSPSGTGKSTILH-IAGLLEVPDQGNVIIANQLCNKLSDDKKS 83
            +L NV  + K G + AL+  SG GK+T+L  +AG       G  I  + L +    D+++
Sbjct: 806  LLNNVSGAFKPGVLTALMGESGAGKTTLLDVLAGRKT----GGYIEGDILISGFPKDQET 861

Query: 84   FLRCSKIGFVYQEHRLLMDFSVIENIIFP---QIIAGINHKTAYQRAMDLLSYMDMSQYA 140
            F R    G+V Q+     + +V E++ F    ++   ++ +  Y+   +++  +++ +YA
Sbjct: 862  FAR--VSGYVEQQDIHSPELTVRESLRFSAALRLPKEVSDEEKYEYVEEVIELLELKEYA 919

Query: 141  NR----RSSDISGGEQQRVAICRAIANKP-LIILADEPTGNLDLKTAQQVFSILKYLVVR 195
            +       S +S  +++R+ I   +   P  I+  DEPT  LD + A  V   L+ L   
Sbjct: 920  DALVGLPGSGLSTEQRKRLTIGVELVANPSSILFLDEPTSGLDSQAAAIVMRFLRKL-AD 978

Query: 196  SGLAALIATH--NHDLASQMDRQITIRDG 222
            +G   L   H  + D+    D  + ++ G
Sbjct: 979  TGQTILCTIHQPSIDIFEAFDELLLLKRG 1007



 Score = 49.1 bits (117), Expect = 1e-06
 Identities = 48/199 (24%), Positives = 85/199 (42%), Gaps = 19/199 (9%)

Query: 21  KPFPVLENVHLSLKKGEIVALVSPSGTGKSTILH-IAGLLEVPDQGNVIIANQLCNKLSD 79
           K   +L+++   +K GE+  ++ P G+GK+T+L  +AG L+   + +  I          
Sbjct: 126 KKIQILKDISGIIKPGEMTLVLGPPGSGKTTLLKALAGKLDNFLKSSGEITYN-----GH 180

Query: 80  DKKSFLRCSKIGFVYQEHRLLMDFSVIENIIF------PQIIAGINHKTAYQRAM-DL-- 130
           D K F+    + +  ++     + +V E + F      P        +     AM D   
Sbjct: 181 DLKEFVPKKTVAYNSEQDVHFPELTVRETLDFAARCKGPGSRYDEVSRREKLAAMTDYLL 240

Query: 131 ----LSYMDMSQYANRRSSDISGGEQQRVAICRAIANKPLIILADEPTGNLDLKTAQQVF 186
               L +   +   N     +SGGE++RV+I   +     I+  DE T  LD  TA Q+ 
Sbjct: 241 KILGLDHCADTLVGNDMVRGVSGGERKRVSIGEMLVGPASILFWDEITRGLDSSTAFQII 300

Query: 187 SILKYLVVRSGLAALIATH 205
             L+ L   +G  AL++  
Sbjct: 301 KALRQLAHITGATALVSIL 319


>gnl|CDD|72990 cd03231, ABC_CcmA_heme_exporter, CcmA, the ATP-binding component of
           the bacterial CcmAB transporter.  The CCM family is
           involved in bacterial cytochrome c biogenesis.
           Cytochrome c maturation in E. coli requires the ccm
           operon, which encodes eight membrane proteins
           (CcmABCDEFGH).  CcmE is a periplasmic heme chaperone
           that binds heme covalently and transfers it onto
           apocytochrome c in the presence of CcmF, CcmG, and CcmH.
            The CcmAB proteins represent an ABC transporter and the
           CcmCD proteins participate in heme transfer to CcmE..
          Length = 201

 Score = 66.5 bits (162), Expect = 5e-12
 Identities = 44/198 (22%), Positives = 82/198 (41%), Gaps = 17/198 (8%)

Query: 25  VLENVHLSLKKGEIVALVSPSGTGKSTILHIAGLLEVPDQGNVIIANQLCNKLSDDKKSF 84
           +   +  +L  GE + +  P+G+GK+T+L I   L  P  G V++     +   D     
Sbjct: 15  LFSGLSFTLAAGEALQVTGPNGSGKTTLLRILAGLSPPLAGRVLLNGGPLDFQRDSIAR- 73

Query: 85  LRCSKIGFVYQEHRLLMD--FSVIENIIFPQIIAGINHKTAYQRAMDLLSYMDMSQYANR 142
                 G +Y  H   +    SV+EN+ F       +     + A+     + ++ + +R
Sbjct: 74  ------GLLYLGHAPGIKTTLSVLENLRF---WHADHSDEQVEEALA---RVGLNGFEDR 121

Query: 143 RSSDISGGEQQRVAICRAIANKPLIILADEPTGNLDLKTAQQVFSILKYLVVRSGLAALI 202
             + +S G+Q+RVA+ R + +   + + DEPT  LD     +    +     R G   ++
Sbjct: 122 PVAQLSAGQQRRVALARLLLSGRPLWILDEPTTALDKAGVARFAEAMAGHCARGG-MVVL 180

Query: 203 ATHNHDLASQMDRQITIR 220
            TH  DL         + 
Sbjct: 181 TTH-QDLGLSEAGARELD 197


>gnl|CDD|36145 KOG0927, KOG0927, KOG0927, Predicted transporter (ABC superfamily)
           [General function prediction only].
          Length = 614

 Score = 65.4 bits (159), Expect = 1e-11
 Identities = 43/177 (24%), Positives = 78/177 (44%), Gaps = 10/177 (5%)

Query: 15  SYRQVGKPFPVLENVHLSLKKGEIVALVSPSGTGKSTILHIAGLLEVPDQGNVIIANQLC 74
           S         ++++V L L +G    L+ P+G+GKST L      EVP   ++       
Sbjct: 80  SLSLSFHGVELIKDVTLELNRGRRYGLIGPNGSGKSTFLRAIAGREVPIPEHIDFYLLSR 139

Query: 75  NKLSDDKKS----FLRCSK--IGFVYQEHRLLM---DFSVIENIIFPQIIAGINHKTAYQ 125
                +K++     +          Y    L     D    E     + +  +++ T   
Sbjct: 140 EIEPSEKQAVQAVVMETDHERKRLEYLAEDLAQACDDKEKDELDELYERLDEMDNDTFEA 199

Query: 126 RAMDLLSYMD-MSQYANRRSSDISGGEQQRVAICRAIANKPLIILADEPTGNLDLKT 181
           +A  +L  +  +S+  +++  D+SGG + R A+ RA+  KP ++L DEPT +LDL+ 
Sbjct: 200 KAAKILHGLGFLSEMQDKKVKDLSGGWRMRAALARALFQKPDLLLLDEPTNHLDLEA 256



 Score = 58.0 bits (140), Expect = 2e-09
 Identities = 42/179 (23%), Positives = 74/179 (41%), Gaps = 26/179 (14%)

Query: 6   VLLLQNVKHSYRQVGKPFPVLENVHLSLKKGEIVALVSPSGTGKSTILHIAGLLEVPDQG 65
           V+++QNV   Y        + + ++  +     VALV P+G GKST+L +      P  G
Sbjct: 389 VIMVQNVSFGYS---DNPMIYKKLNFGIDLDSRVALVGPNGAGKSTLLKLITGDLQPTIG 445

Query: 66  NVIIANQLCNKLSDDKKSFLRCSKIGFVYQEH---RLLMDFSVIENIIFPQIIAGINHKT 122
            V   +                 K+   Y +H   +L +D S +E ++            
Sbjct: 446 MVSRHSHN---------------KLP-RYNQHLAEQLDLDKSSLEFMM--PKFPDEKELE 487

Query: 123 AYQRAMDLLSYMDMSQYANRRSSDISGGEQQRVAICRAIANKPLIILADEPTGNLDLKT 181
             +  +        +Q      S +S G+++RV   R    +P ++L DEPT +LD++T
Sbjct: 488 EMRSILGRFGLTGDAQ--VVPMSQLSDGQRRRVLFARLAVKQPHLLLLDEPTNHLDIET 544


>gnl|CDD|72996 cd03237, ABC_RNaseL_inhibitor_domain2, The ATPase domain 2 of RNase
           L inhibitor.  The ABC ATPase, RNase L inhibitor (RLI),
           is a key enzyme in ribosomal biogenesis, formation of
           translation preinitiation complexes, and assembly of HIV
           capsids.  RLI's are not transport proteins and thus
           cluster with a group of soluble proteins that lack the
           transmembrane components commonly found in other members
           of the family.  Structurally, RLI's have an N-terminal
           Fe-S domain and two nucleotide-binding domains which are
           arranged to form two composite active sites in their
           interface cleft.  RLI is one of the most conserved
           enzymes between archaea and eukaryotes with a sequence
           identity of more than 48%.  The high degree of
           evolutionary conservation suggests that RLI performs a
           central role in archaeal and eukaryotic physiology..
          Length = 246

 Score = 64.9 bits (158), Expect = 2e-11
 Identities = 39/192 (20%), Positives = 85/192 (44%), Gaps = 22/192 (11%)

Query: 32  SLKKGEIVALVSPSGTGKSTILHI-AGLLEVPDQGNVIIANQLCNKLSDDKKSFLRCSKI 90
           S+ + E++ ++ P+G GK+T + + AG+L+ PD+G++ I       +S            
Sbjct: 21  SISESEVIGILGPNGIGKTTFIKMLAGVLK-PDEGDIEIELD---TVS------------ 64

Query: 91  GFVYQEHRLLMDFSVIENIIFPQIIAGINHKTAYQRAMDLLSYMDMSQYANRRSSDISGG 150
              Y+   +  D+      +   I         ++   ++   + + Q  +R   ++SGG
Sbjct: 65  ---YKPQYIKADYEGTVRDLLSSITKDFYTHPYFK--TEIAKPLQIEQILDREVPELSGG 119

Query: 151 EQQRVAICRAIANKPLIILADEPTGNLDLKTAQQVFSILKYLVVRSGLAALIATHNHDLA 210
           E QRVAI   ++    I L DEP+  LD++       +++     +   A +  H+  + 
Sbjct: 120 ELQRVAIAACLSKDADIYLLDEPSAYLDVEQRLMASKVIRRFAENNEKTAFVVEHDIIMI 179

Query: 211 SQMDRQITIRDG 222
             +  ++ + +G
Sbjct: 180 DYLADRLIVFEG 191


>gnl|CDD|31438 COG1245, COG1245, Predicted ATPase, RNase L inhibitor (RLI) homolog
           [General function prediction only].
          Length = 591

 Score = 64.8 bits (158), Expect = 2e-11
 Identities = 41/190 (21%), Positives = 85/190 (44%), Gaps = 29/190 (15%)

Query: 32  SLKKGEIVALVSPSGTGKSTILHI-AGLLEVPDQGNVIIANQLCNKLSDDKKSFLRCSKI 90
            +  GE++ ++ P+G GK+T + + AG+++ PD+G+                       +
Sbjct: 363 EIYDGEVIGILGPNGIGKTTFVKLLAGVIK-PDEGSEE--------------------DL 401

Query: 91  GFVYQEHRLLMDFSVIENIIFPQIIAGINHKTAYQRAMDLLSYMDMSQYANRRSSDISGG 150
              Y+   +  D+      +    I      + ++   +++  +++     R   ++SGG
Sbjct: 402 KVSYKPQYISPDYDGTVEDLLRSAIRSAFGSSYFK--TEIVKPLNLEDLLERPVDELSGG 459

Query: 151 EQQRVAICRAIANKPLIILADEPTGNLDLKTAQQVFSILKYLVVRSGLAALIATHN---H 207
           E QRVAI  A++ +  + L DEP+  LD++    V  +++  +  +   AL+  H+    
Sbjct: 460 ELQRVAIAAALSREADLYLLDEPSAYLDVEQRIIVAKVIRRFIENNEKTALVVDHDIYMI 519

Query: 208 DLASQMDRQI 217
           D  S  DR I
Sbjct: 520 DYVS--DRLI 527



 Score = 52.9 bits (127), Expect = 7e-08
 Identities = 45/188 (23%), Positives = 83/188 (44%), Gaps = 22/188 (11%)

Query: 34  KKGEIVALVSPSGTGKSTILHI-AGLLEVPDQGNVIIANQLCNKLSDDKKSFLRCSKI-- 90
           + G++V ++ P+G GKST L I AG L  P+ G         +   D+     R +++  
Sbjct: 98  RPGKVVGILGPNGIGKSTALKILAGEL-KPNLGRY---EDPPSW--DEVIKRFRGTELQN 151

Query: 91  ---GFVYQEHRLLMDFSVIENIIFPQIIAG-----INHKTAYQRAMDLLSYMDMSQYANR 142
                   E R +     ++ I  P+++ G     +       +  +++  + +    +R
Sbjct: 152 YFKKLYEGELRAVHKPQYVDLI--PKVVKGKVGELLKKVDERGKFDEVVERLGLENVLDR 209

Query: 143 RSSDISGGEQQRVAICRAIANKPLIILADEPTGNLDLKTAQQVFSILKYLVVRSGLAALI 202
             S++SGGE QRVAI  A+     +   DEP+  LD++       +++ L    G   ++
Sbjct: 210 DVSELSGGELQRVAIAAALLRDADVYFFDEPSSYLDIRQRLNAARVIREL-AEDGKYVIV 268

Query: 203 ATHNHDLA 210
               HDLA
Sbjct: 269 V--EHDLA 274


>gnl|CDD|72980 cd03221, ABCF_EF-3, ABCF_EF-3  Elongation factor 3 (EF-3) is a
           cytosolic protein required by fungal ribosomes for in
           vitro protein synthesis and for in vivo growth.  EF-3
           stimulates the binding of the EF-1: GTP: aa-tRNA ternary
           complex to the ribosomal A site by facilitated release
           of the deacylated tRNA from the E site.  The reaction
           requires ATP hydrolysis.  EF-3 contains two ATP
           nucleotide binding sequence (NBS) motifs.  NBSI is
           sufficient for the intrinsic ATPase activity. NBSII is
           essential for the ribosome-stimulated functions..
          Length = 144

 Score = 64.7 bits (158), Expect = 2e-11
 Identities = 43/217 (19%), Positives = 82/217 (37%), Gaps = 75/217 (34%)

Query: 7   LLLQNVKHSYRQVGKPFPVLENVHLSLKKGEIVALVSPSGTGKSTILHIAGLLEVPDQGN 66
           + L+N+  +Y        +L+++ L++  G+ + LV  +G GKST+L +           
Sbjct: 1   IELENLSKTY----GGKLLLKDISLTINPGDRIGLVGRNGAGKSTLLKL----------- 45

Query: 67  VIIANQLCNKLSDDKKSFLRCSKIGFVYQEHRLLMDFSVIENIIFPQIIAGINHKTAYQR 126
                 +  +L  D+      S +   Y                F Q+            
Sbjct: 46  ------IAGELEPDEGIVTWGSTVKIGY----------------FEQL------------ 71

Query: 127 AMDLLSYMDMSQYANRRSSDISGGEQQRVAICRAIANKPLIILADEPTGNLDLKTAQQVF 186
                                SGGE+ R+A+ + +   P ++L DEPT +LDL++ + + 
Sbjct: 72  ---------------------SGGEKMRLALAKLLLENPNLLLLDEPTNHLDLESIEALE 110

Query: 187 SILKYLVVRSGLAALIATHNHDLASQM-DRQITIRDG 222
             LK      G   ++ +H+     Q+  + I + DG
Sbjct: 111 EALKEY---PG-TVILVSHDRYFLDQVATKIIELEDG 143


>gnl|CDD|33918 COG4178, COG4178, ABC-type uncharacterized transport system,
           permease and ATPase components [General function
           prediction only].
          Length = 604

 Score = 63.7 bits (155), Expect = 3e-11
 Identities = 44/201 (21%), Positives = 85/201 (42%), Gaps = 22/201 (10%)

Query: 24  PVLENVHLSLKKGEIVALVSPSGTGKSTILH-IAGLLEVPDQGNVIIANQLCNKLSDDKK 82
            +L  ++  ++ GE + +   SG GK+++L  +AGL      G + +             
Sbjct: 407 TLLSELNFEVRPGERLLITGESGAGKTSLLRALAGLWPW-GSGRISMP------------ 453

Query: 83  SFLRCSKIGFVYQEHRLLMDFSVIENIIFPQIIAGINHKTAYQ--RAMDLLSYMDMSQYA 140
                S + F+ Q    L   ++ E + +P      +          + L    +     
Sbjct: 454 ---ADSALLFLPQ-RPYLPQGTLREALCYPNAAPDFSDAELVAVLHKVGLGDLAERLDEE 509

Query: 141 NRRSSDISGGEQQRVAICRAIANKPLIILADEPTGNLDLKTAQQVFSILKYLVVRSGLAA 200
           +R    +SGGEQQR+A  R + +KP  +  DE T  LD +T  +++ +LK  +  + + +
Sbjct: 510 DRWDRVLSGGEQQRLAFARLLLHKPKWVFLDEATSALDEETEDRLYQLLKEELPDATVIS 569

Query: 201 LIATHNHDLASQMDRQITIRD 221
           +   H   L +   RQ+ + D
Sbjct: 570 V--GHRPTLWNFHSRQLELLD 588


>gnl|CDD|73049 cd03290, ABCC_SUR1_N, The SUR domain 1.  The sulfonylurea receptor
           SUR is an ATP transporter of the ABCC/MRP family with
           tandem ATPase binding domains.  Unlike other ABC
           proteins, it has no intrinsic transport function,
           neither active nor passive, but associates with the
           potassium channel proteins Kir6.1 or Kir6.2 to form the
           ATP-sensitive potassium (K(ATP)) channel.  Within the
           channel complex, SUR serves as a regulatory subunit that
           fine-tunes the gating of Kir6.x in response to
           alterations in cellular metabolism.  It constitutes a
           major pharmaceutical target as it binds numerous drugs,
           K(ATP) channel openers and blockers, capable of up- or
           down-regulating channel activity..
          Length = 218

 Score = 64.0 bits (155), Expect = 3e-11
 Identities = 57/220 (25%), Positives = 102/220 (46%), Gaps = 12/220 (5%)

Query: 12  VKHSYRQVGKPFPVLENVHLSLKKGEIVALVSPSGTGKSTILHIAGLLEVPD-QGNVIIA 70
           V + Y   G     L N+++ +  G++  +V   G GKS++L +A L E+   +G V  +
Sbjct: 3   VTNGYFSWGSGLATLSNINIRIPTGQLTMIVGQVGCGKSSLL-LAILGEMQTLEGKVHWS 61

Query: 71  NQLCNKLSDDKKSFLRCSKIGFVYQEHRLLMDFSVIENIIF-----PQIIAGINHKTAYQ 125
           N+  ++ S +         + +  Q+  LL + +V ENI F      Q    +    + Q
Sbjct: 62  NKNESEPSFEATRSRNRYSVAYAAQKPWLL-NATVEENITFGSPFNKQRYKAVTDACSLQ 120

Query: 126 RAMDLLSYMDMSQYANRRSSDISGGEQQRVAICRAIANKPLIILADEPTGNLDLKTAQQV 185
             +DLL + D ++    R  ++SGG++QR+ + RA+     I+  D+P   LD+  +  +
Sbjct: 121 PDIDLLPFGDQTEIG-ERGINLSGGQRQRICVARALYQNTNIVFLDDPFSALDIHLSDHL 179

Query: 186 FS--ILKYLVVRSGLAALIATHNHDLASQMDRQITIRDGM 223
               ILK+L        L+ TH        D  I ++DG 
Sbjct: 180 MQEGILKFLQDDKRTLVLV-THKLQYLPHADWIIAMKDGS 218


>gnl|CDD|73003 cd03244, ABCC_MRP_domain2, Domain 2 of the ABC subfamily C.  This
           family is also known as MRP (mulrtidrug
           resisitance-associated protein).  Some of the MRP
           members have five additional transmembrane segments in
           their N-terminus, but the function of these additional
           membrane-spanning domains is not clear.  The MRP was
           found in the multidrug-resistance lung cancer cell in
           which p-glycoprotein was not overexpressed.  MRP exports
           glutathione by drug stimulation, as well as, certain
           substrates in conjugated forms with anions, such as
           glutathione, glucuronate, and sulfate..
          Length = 221

 Score = 63.2 bits (154), Expect = 6e-11
 Identities = 46/189 (24%), Positives = 89/189 (47%), Gaps = 17/189 (8%)

Query: 9   LQNVKHSYRQVGKPFPVLENVHLSLKKGEIVALVSPSGTGKSTILH-IAGLLEVPDQGNV 67
            +NV   YR    P  VL+N+  S+K GE V +V  +G+GKS++L  +  L+E    G++
Sbjct: 5   FKNVSLRYRPNLPP--VLKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLVE-LSSGSI 61

Query: 68  IIANQLCNKLSDDKKSFLRCSKIGFVYQEHRLLMDFSVIENI-IFPQ-----IIAGINHK 121
           +I     +K+       LR S+I  + Q+  +L   ++  N+  F +     +   +   
Sbjct: 62  LIDGVDISKIGLHD---LR-SRISIIPQD-PVLFSGTIRSNLDPFGEYSDEELWQALERV 116

Query: 122 TAYQRAMDLLSYMDMSQYANRRSSDISGGEQQRVAICRAIANKPLIILADEPTGNLDLKT 181
              +    L   +D          ++S G++Q + + RA+  K  I++ DE T ++D +T
Sbjct: 117 GLKEFVESLPGGLDT--VVEEGGENLSVGQRQLLCLARALLRKSKILVLDEATASVDPET 174

Query: 182 AQQVFSILK 190
              +   ++
Sbjct: 175 DALIQKTIR 183


>gnl|CDD|72991 cd03232, ABC_PDR_domain2, The pleiotropic drug resistance-like
           (PDR) family of ATP-binding cassette (ABC) transporters.
           PDR is a well-described phenomenon occurring in fungi
           and shares several similarities with processes in
           bacteria and higher eukaryotes.  This PDR subfamily
           represents domain I of its (ABC-IM)2 organization.  ABC
           transporters are a large family of proteins involved in
           the transport of a wide variety of different compounds
           including sugars, ions, peptides, and more complex
           organic molecules.  The nucleotide binding domain shows
           the highest similarity between all members of the
           family.  ABC transporters are a subset of nucleotide
           hydrolases that contain a signature motif, Q-loop, and
           H-loop/switch region, in addition to, the Walker A
           motif/P-loop and Walker B motif commonly found in a
           number of ATP- and GTP-binding and hydrolyzing
           proteins..
          Length = 192

 Score = 62.9 bits (153), Expect = 7e-11
 Identities = 56/225 (24%), Positives = 95/225 (42%), Gaps = 50/225 (22%)

Query: 6   VLLLQNVKHSYRQVGKPFPVLENVHLSLKKGEIVALVSPSGTGKSTILHI------AGLL 59
           VL  +N+ ++    G    +L N+   +K G + AL+  SG GK+T+L +      AG++
Sbjct: 3   VLTWKNLNYTVPVKGGKRQLLNNISGYVKPGTLTALMGESGAGKTTLLDVLAGRKTAGVI 62

Query: 60  EVPDQGNVIIANQLCNKLSDDKKSFLRCSKIGFVYQEHRLLMDFSVIENIIFPQIIAGIN 119
                G ++I  +         K+F R    G+V Q+     + +V E + F  ++ G+ 
Sbjct: 63  T----GEILINGRP------LDKNFQR--STGYVEQQDVHSPNLTVREALRFSALLRGL- 109

Query: 120 HKTAYQRAMDLLSYMDMSQYANRRSSDISGGEQQRVAICRAIANKPLIILADEPTGNLDL 179
             +  QR                          +R+ I   +A KP I+  DEPT  LD 
Sbjct: 110 --SVEQR--------------------------KRLTIGVELAAKPSILFLDEPTSGLDS 141

Query: 180 KTAQQVFSILKYLVVRSGLAALIATH--NHDLASQMDRQITIRDG 222
           + A  +   LK L   SG A L   H  +  +  + DR + ++ G
Sbjct: 142 QAAYNIVRFLKKL-ADSGQAILCTIHQPSASIFEKFDRLLLLKRG 185


>gnl|CDD|34291 COG4674, COG4674, Uncharacterized ABC-type transport system, ATPase
           component [General function prediction only].
          Length = 249

 Score = 61.8 bits (150), Expect = 2e-10
 Identities = 47/226 (20%), Positives = 103/226 (45%), Gaps = 18/226 (7%)

Query: 3   SAEVLLLQNVKHSYRQVGKPFPVLENVHLSLKKGEIVALVSPSGTGKSTILHIAGLLEVP 62
           +  +L L  V  S+      F  L ++  S+  GE+  L+ P+G GK+T++ +      P
Sbjct: 2   NPIILYLDGVSVSF----GGFKALNDLSFSVDPGELRVLIGPNGAGKTTLMDVITGKTRP 57

Query: 63  DQGNVIIANQLCNKLSDDKKSFLRCSKIGFVYQEHRLLMDFSVIENI---------IFPQ 113
            +G V+        L+   +  +  + IG  +Q+  +  + +V EN+         +F  
Sbjct: 58  QEGEVLFDGDT--DLTKLPEHRIARAGIGRKFQKPTVFENLTVRENLELALNRDKSVFAS 115

Query: 114 IIAGINHKTAYQRAMDLLSYMDMSQYANRRSSDISGGEQQRVAICRAIANKPLIILADEP 173
           + A +  +   +R  +LL+ + +    +R ++ +S G++Q + I   +A  P ++L DEP
Sbjct: 116 LFARLRAEER-RRIDELLATIGLGDERDRLAALLSHGQKQWLEIGMLLAQDPKLLLLDEP 174

Query: 174 TGNLDLKTAQQVFSILKYLVVRSGLAALIATHNHDLASQMDRQITI 219
              +     ++   +LK L      + L+  H+     ++  ++T+
Sbjct: 175 VAGMTDAETEKTAELLKSL--AGKHSILVVEHDMGFVREIADKVTV 218


>gnl|CDD|33909 COG4167, SapF, ABC-type antimicrobial peptide transport system,
           ATPase component [Defense mechanisms].
          Length = 267

 Score = 60.0 bits (145), Expect = 5e-10
 Identities = 47/204 (23%), Positives = 99/204 (48%), Gaps = 10/204 (4%)

Query: 23  FPVLENVHLSLKKGEIVALVSPSGTGKSTILH-IAGLLEVPDQGNVIIANQLCNKLSDDK 81
              ++ V  +L++G+ +A++  +G+GKST+   +AG++E P  G ++I +     L    
Sbjct: 26  VEAVKPVSFTLREGQTLAIIGENGSGKSTLAKMLAGMIE-PTSGEILINDHP---LHFGD 81

Query: 82  KSFLRCSKIGFVYQEHRLLMDFSVIENIIFPQIIAGINHKTAYQRAMDLLSYMDM----S 137
            SF R  +I  ++Q+    ++  +    I    +         QR   +   + M     
Sbjct: 82  YSF-RSKRIRMIFQDPNTSLNPRLRIGQILDFPLRLNTDLEPEQRRKQIFETLRMVGLLP 140

Query: 138 QYANRRSSDISGGEQQRVAICRAIANKPLIILADEPTGNLDLKTAQQVFSILKYLVVRSG 197
            +AN     ++ G++QRVA+ RA+  +P II+ADE   +LD+    Q+ +++  L  + G
Sbjct: 141 DHANYYPHMLAPGQKQRVALARALILRPKIIIADEALASLDMSMRSQLINLMLELQEKQG 200

Query: 198 LAALIATHNHDLASQMDRQITIRD 221
           ++ +  T +  +   +  Q+ +  
Sbjct: 201 ISYIYVTQHIGMIKHISDQVLVMH 224


>gnl|CDD|72992 cd03233, ABC_PDR_domain1, The pleiotropic drug resistance (PDR)
           family of ATP-binding cassette (ABC) transporters.  PDR
           is a well-described phenomenon occurring in fungi and
           shares several similarities with processes in bacteria
           and higher eukaryotes.  This PDR subfamily represents
           domain I of its (ABC-IM)2 organization.  ABC
           transporters are a large family of proteins involved in
           the transport of a wide variety of different compounds
           including sugars, ions, peptides, and more complex
           organic molecules.  The nucleotide-binding domain shows
           the highest similarity between all members of the
           family.  ABC transporters are a subset of nucleotide
           hydrolases that contain a signature motif, Q-loop, and
           H-loop/switch region, in addition to, the Walker A
           motif/P-loop and Walker B motif commonly found in a
           number of ATP- and GTP-binding and hydrolyzing
           proteins..
          Length = 202

 Score = 59.8 bits (145), Expect = 6e-10
 Identities = 44/223 (19%), Positives = 87/223 (39%), Gaps = 32/223 (14%)

Query: 5   EVLLLQNVKHSYRQVGKP-FPVLENVHLSLKKGEIVALVSPSGTGKSTIL-HIAGLLEVP 62
              L           G+   P+L++    +K GE+V ++   G+G ST+L  +A   E  
Sbjct: 1   ASTLSWRNISFTTGKGRSKIPILKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANRTE-- 58

Query: 63  DQGNVIIANQLCNKLSDDKKSFLRC-SKIGFVYQEHRLLMDFSVIENIIFPQIIAGINHK 121
             GNV +   +       K+   +   +I +V +E       +V E + F     G    
Sbjct: 59  --GNVSVEGDIHYNGIPYKEFAEKYPGEIIYVSEEDVHFPTLTVRETLDFALRCKG---- 112

Query: 122 TAYQRAMDLLSYMDMSQYANRRSSDISGGEQQRVAICRAIANKPLIILADEPTGNLDLKT 181
                              N     ISGGE++RV+I  A+ ++  ++  D  T  LD  T
Sbjct: 113 -------------------NEFVRGISGGERKRVSIAEALVSRASVLCWDNSTRGLDSST 153

Query: 182 AQQVFSILKYLVVRSGLAALIATH--NHDLASQMDRQITIRDG 222
           A ++   ++ +         ++ +  + ++    D+ + + +G
Sbjct: 154 ALEILKCIRTMADVLKTTTFVSLYQASDEIYDLFDKVLVLYEG 196


>gnl|CDD|73050 cd03291, ABCC_CFTR1, The CFTR subfamily domain 1.  The cystic
           fibrosis transmembrane regulator (CFTR), the product of
           the gene mutated in patients with cystic fibrosis, has
           adapted the ABC transporter structural motif to form a
           tightly regulated anion channel at the apical surface of
           many epithelia.  Use of the term assembly of a
           functional ion channel implies the coming together of
           subunits, or at least smaller not-yet functional
           components of the active whole.  In fact, on the basis
           of current knowledge only the CFTR polypeptide itself is
           required to form an ATP- and protein kinase A-dependent
           low-conductance chloride channel of the type present in
           the apical membrane of many epithelial cells.  CFTR
           displays the typical organization (IM-ABC)2 and carries
           a characteristic hydrophilic R-domain that separates
           IM1-ABC1 from IM2-ABC2..
          Length = 282

 Score = 58.9 bits (142), Expect = 1e-09
 Identities = 46/171 (26%), Positives = 91/171 (53%), Gaps = 30/171 (17%)

Query: 24  PVLENVHLSLKKGEIVALVSPSGTGKSTILH-IAGLLEVPDQGNVIIANQLCNKLSDDKK 82
           PVL+N++L ++KGE++A+   +G+GK+++L  I G LE P +G +  + ++         
Sbjct: 51  PVLKNINLKIEKGEMLAITGSTGSGKTSLLMLILGELE-PSEGKIKHSGRI--------- 100

Query: 83  SFLRCSKIGFVYQEHRLLMDFSVIENIIFPQIIAGINHKTAYQRAMDLLSYMDMSQYANR 142
           SF   S+  ++       M  ++ ENIIF        +K+  + A  L    D++++  +
Sbjct: 101 SF--SSQFSWI-------MPGTIKENIIFGVSYDEYRYKSVVK-ACQLEE--DITKFPEK 148

Query: 143 RSS-------DISGGEQQRVAICRAIANKPLIILADEPTGNLDLKTAQQVF 186
            ++        +SGG++ R+++ RA+     + L D P G LD+ T +++F
Sbjct: 149 DNTVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEKEIF 199


>gnl|CDD|72982 cd03223, ABCD_peroxisomal_ALDP, Peroxisomal ATP-binding cassette
           transporter (Pat) is involved in the import of very
           long-chain fatty acids (VLCFA) into the peroxisome.  The
           peroxisomal membrane forms a permeability barrier for a
           wide variety of metabolites required for and formed
           during fatty acid beta-oxidation.  To communicate with
           the cytoplasm and mitochondria, peroxisomes need
           dedicated proteins to transport such hydrophilic
           molecules across their membranes.  X-linked
           adrenoleukodystrophy (X-ALD) is caused by mutations in
           the ALD gene, which encodes ALDP (adrenoleukodystrophy
           protein ), a peroxisomal integral membrane protein that
           is a member of the ATP-binding cassette (ABC)
           transporter protein family.  The disease is
           characterized by a striking and unpredictable variation
           in phenotypic expression.  Phenotypes include the
           rapidly progressive childhood cerebral form (CCALD), the
           milder adult form, adrenomyeloneuropathy (AMN), and
           variants without neurologic involvement (i.e.
           asymptomatic)..
          Length = 166

 Score = 58.2 bits (141), Expect = 2e-09
 Identities = 45/198 (22%), Positives = 79/198 (39%), Gaps = 54/198 (27%)

Query: 24  PVLENVHLSLKKGEIVALVSPSGTGKSTILH-IAGLLEVPDQGNVIIANQLCNKLSDDKK 82
            +L+++   +K G+ + +  PSGTGKS++   +AGL      G + +             
Sbjct: 15  VLLKDLSFEIKPGDRLLITGPSGTGKSSLFRALAGLWPW-GSGRIGM------------- 60

Query: 83  SFLRCSKIGFVYQEHRLLMDFSVIENIIFPQIIAGINHKTAYQRAMDLLSYMDMSQYANR 142
                  + F+ Q    L   ++ E +I+P                D+LS          
Sbjct: 61  --PEGEDLLFLPQ-RPYLPLGTLREQLIYPW--------------DDVLS---------- 93

Query: 143 RSSDISGGEQQRVAICRAIANKPLIILADEPTGNLDLKTAQQVFSILKYLVVRSGLAALI 202
                 GGEQQR+A  R + +KP  +  DE T  LD ++  +++ +LK          +I
Sbjct: 94  ------GGEQQRLAFARLLLHKPKFVFLDEATSALDEESEDRLYQLLK-----ELGITVI 142

Query: 203 A-THNHDLASQMDRQITI 219
           +  H   L    DR + +
Sbjct: 143 SVGHRPSLWKFHDRVLDL 160


>gnl|CDD|72995 cd03236, ABC_RNaseL_inhibitor_domain1, The ATPase domain 1 of RNase
           L inhibitor.  The ABC ATPase, RNase L inhibitor (RLI),
           is a key enzyme in ribosomal biogenesis, formation of
           translation preinitiation complexes, and assembly of HIV
           capsids.  RLI s are not transport proteins and thus
           cluster with a group of soluble proteins that lack the
           transmembrane components commonly found in other members
           of the family.  Structurally, RLIs have an N-terminal
           Fe-S domain and two nucleotide binding domains which are
           arranged to form two composite active sites in their
           interface cleft.  RLI is one of the most conserved
           enzymes between archaea and eukaryotes with a sequence
           identity more than 48%.  The high degree of evolutionary
           conservation suggests that RLI performs a central role
           in archaeal and eukaryotic physiology..
          Length = 255

 Score = 53.7 bits (129), Expect = 4e-08
 Identities = 46/190 (24%), Positives = 79/190 (41%), Gaps = 26/190 (13%)

Query: 34  KKGEIVALVSPSGTGKSTILHIAGLLEVPDQGNVIIANQLCNKLS-DDKKSFLRCSKIGF 92
           ++G+++ LV P+G GKST L I      P+ G         +    D+     R S++  
Sbjct: 24  REGQVLGLVGPNGIGKSTALKILAGKLKPNLGK------FDDPPDWDEILDEFRGSEL-- 75

Query: 93  VYQEHRLLMDFSVIENIIFPQ------------IIAGINHKTAYQRAMDLLSYMDMSQYA 140
             Q +   +    ++ I+ PQ            +   +  K    +  +L+  +++    
Sbjct: 76  --QNYFTKLLEGDVKVIVKPQYVDLIPKAVKGKVGELLKKKDERGKLDELVDQLELRHVL 133

Query: 141 NRRSSDISGGEQQRVAICRAIANKPLIILADEPTGNLDLKTAQQVFSILKYLVVRSGLAA 200
           +R    +SGGE QRVAI  A+A        DEP+  LD+K       +++ L        
Sbjct: 134 DRNIDQLSGGELQRVAIAAALARDADFYFFDEPSSYLDIKQRLNAARLIREL-AEDDNYV 192

Query: 201 LIATHNHDLA 210
           L+    HDLA
Sbjct: 193 LVV--EHDLA 200


>gnl|CDD|35286 KOG0063, KOG0063, KOG0063, RNAse L inhibitor, ABC superfamily [RNA
           processing and modification].
          Length = 592

 Score = 52.2 bits (125), Expect = 1e-07
 Identities = 41/173 (23%), Positives = 77/173 (44%), Gaps = 14/173 (8%)

Query: 34  KKGEIVALVSPSGTGKSTILHIAGLLEVPDQGNVIIANQLCNKLSDDKKSFLRCSKIGFV 93
           + G+++ LV  +G GKST L I    + P+ G           L+  + S L+      +
Sbjct: 98  RPGQVLGLVGTNGIGKSTALKILAGKQKPNLGRYDNPPDWQEILTYFRGSELQNYFTKIL 157

Query: 94  YQEHRLLMDFSVIENIIFPQIIAG-----INHKTAYQRAMDLLSYMDMSQYANRRSSDIS 148
               + ++    ++ I  P+ + G     ++ K       ++   +D++   +R    +S
Sbjct: 158 EDNLKAIIKPQYVDQI--PRAVKGTVGSLLDRKDERDNKEEVCDQLDLNNLLDREVEQLS 215

Query: 149 GGEQQRVAICRAIANKPLIILADEPTGNLD----LKTAQQVFSIL---KYLVV 194
           GGE QR AI      K  + + DEP+  LD    LK A  + S++   +Y++V
Sbjct: 216 GGELQRFAIAMVCVQKADVYMFDEPSSYLDVKQRLKAAITIRSLINPDRYIIV 268



 Score = 46.4 bits (110), Expect = 6e-06
 Identities = 46/209 (22%), Positives = 88/209 (42%), Gaps = 40/209 (19%)

Query: 26  LENVHLSLKKG-----EIVALVSPSGTGKSTILH-IAGLLEVPDQG------NVIIANQL 73
           + +  L +K G     EI+ ++  +GTGK+T +  +AG L+ PD+G      NV    Q 
Sbjct: 352 VGDFCLCIKVGEFSDSEIIVMLGENGTGKTTFIRMLAGRLK-PDEGGEIPVLNVSYKPQK 410

Query: 74  CNKLSDDKKSFLRCSKIGFVYQEHRLLMDFSVIENIIFPQIIAGINHKTAYQRAMDLLSY 133
            +   +     L  +KI   Y   + + D  V++ +    II                  
Sbjct: 411 ISPKREGTVRQLLHTKIRDAYMHPQFVND--VMKPLQIENII------------------ 450

Query: 134 MDMSQYANRRSSDISGGEQQRVAICRAIANKPLIILADEPTGNLDLKTAQQVFSILKYLV 193
                  ++    +SGGE QRVA+   +     + L DEP+  LD +       ++K  +
Sbjct: 451 -------DQEVQGLSGGELQRVALALCLGKPADVYLIDEPSAYLDSEQRIIASKVIKRFI 503

Query: 194 VRSGLAALIATHNHDLASQMDRQITIRDG 222
           + +   A +  H+  +A+ +  ++ + +G
Sbjct: 504 LHAKKTAFVVEHDFIMATYLADRVIVFEG 532


>gnl|CDD|35289 KOG0066, KOG0066, KOG0066, eIF2-interacting protein ABC50 (ABC
           superfamily) [Translation, ribosomal structure and
           biogenesis].
          Length = 807

 Score = 52.0 bits (124), Expect = 1e-07
 Identities = 47/170 (27%), Positives = 87/170 (51%), Gaps = 18/170 (10%)

Query: 25  VLENVHLSLKKGEIVALVSPSGTGKSTIL-HIAG-LLEVPDQGNVIIANQLCNKLSDDK- 81
           +  N  L++  G    LV P+G GK+T+L HIA   L +P   +V++  Q    ++D   
Sbjct: 279 LFVNASLTIVYGRRYGLVGPNGMGKTTLLKHIAARALAIPPNIDVLLCEQ--EVVADSTS 336

Query: 82  --KSFLRCSK--IGFVYQEHRLLMDF-----SVIENI--IFPQIIAGINHKTAYQRAMDL 130
              + L+  K  +  + +E +L+        +  E +  +  ++ A I   +A  RA  +
Sbjct: 337 AIDTVLKADKKRLALLEEEAKLMSQIEEGDTTAAERLKEVADELRA-IGADSAEARARRI 395

Query: 131 LSYMDMS-QYANRRSSDISGGEQQRVAICRAIANKPLIILADEPTGNLDL 179
           L+ +  S +   R ++  SGG + RV++ RA+  +P +++ DEPT +LDL
Sbjct: 396 LAGLGFSKEMQERPTTKFSGGWRMRVSLARALFLEPTLLMLDEPTNHLDL 445



 Score = 51.6 bits (123), Expect = 1e-07
 Identities = 47/180 (26%), Positives = 85/180 (47%), Gaps = 30/180 (16%)

Query: 6   VLLLQNVKHSYRQVGKPFPVLENVHLSLKKGEIVALVSPSGTGKSTILH-IAGLLEVPDQ 64
           VL L +V   Y   G+  P+ + +   +     +A+V P+G GKST+L  + G L+ P+ 
Sbjct: 586 VLGLHDVTFGYP--GQK-PLFKKLDFGIDMDSRIAIVGPNGVGKSTLLKLLIGKLD-PND 641

Query: 65  GNVIIANQLCNKLSDDKKSFLRCSKIGFVYQEH--RLLMDFSVIENIIFPQIIAGINHKT 122
           G +   ++L               +IG+  Q     L  + + +E   + Q    +    
Sbjct: 642 GELRKNHRL---------------RIGWFDQHANEALNGEETPVE---YLQRKFNLP--- 680

Query: 123 AYQRAMDLLSYMDMSQYANR-RSSDISGGEQQRVAICRAIANKPLIILADEPTGNLDLKT 181
            YQ A   L    ++ +A+  +  D+SGG++ RVA+       P +++ DEPT NLD+++
Sbjct: 681 -YQEARKQLGTFGLASHAHTIKIKDLSGGQKARVALAELALGGPDVLILDEPTNNLDIES 739


>gnl|CDD|34240 COG4615, PvdE, ABC-type siderophore export system, fused ATPase and
           permease components [Secondary metabolites biosynthesis,
           transport, and catabolism / Inorganic ion transport and
           metabolism].
          Length = 546

 Score = 51.1 bits (122), Expect = 2e-07
 Identities = 49/221 (22%), Positives = 101/221 (45%), Gaps = 14/221 (6%)

Query: 7   LLLQNVKHSYRQVGKPFPVLENVHLSLKKGEIVALVSPSGTGKSTILHIAGLLEVPDQGN 66
           L L+NV+ +Y+     F V   ++L++K+GE+V L+  +G+GKST+  +   L  P  G 
Sbjct: 323 LELRNVRFAYQDNA--FHV-GPINLTIKRGELVFLIGGNGSGKSTLAMLLTGLYQPQSGE 379

Query: 67  VIIANQLCNKLSDDKKSFLRCSKIGFVYQEHRLLMDFSVIENIIFPQIIAGINHKTAYQR 126
           +++  +    +S ++    R      V+ ++ L       E    PQ+I     +     
Sbjct: 380 ILLDGKP---VSAEQLEDYR-KLFSAVFSDYHLFDQLLGPEGKASPQLIEKWLQRLELA- 434

Query: 127 AMDLLSYMDMSQYANRRSSDISGGEQQRVAICRAIANKPLIILADEPTGNLDLKTAQQVF 186
                S  D        +  +S G+++R+A+  A+  +  I++ DE   + D    ++ +
Sbjct: 435 --HKTSLND----GRFSNLKLSTGQKKRLALLLALLEERDILVLDEWAADQDPAFRREFY 488

Query: 187 SILKYLVVRSGLAALIATHNHDLASQMDRQITIRDGMIADL 227
            +L  L+   G      +H+       DR + +R+G +++L
Sbjct: 489 QVLLPLLKEQGKTIFAISHDDHYFIHADRLLEMRNGQLSEL 529


>gnl|CDD|35285 KOG0062, KOG0062, KOG0062, ATPase component of ABC transporters
           with duplicated ATPase domains/Translation elongation
           factor EF-3b [Amino acid transport and metabolism,
           Translation, ribosomal structure and biogenesis].
          Length = 582

 Score = 51.1 bits (122), Expect = 3e-07
 Identities = 38/162 (23%), Positives = 70/162 (43%), Gaps = 30/162 (18%)

Query: 25  VLENVHLSLKKGEIVALVSPSGTGKSTIL------HIAGLLEVPDQGNVIIANQLCNKLS 78
           +L   +L+L +G    LV  +G GKST+L       ++G     +              S
Sbjct: 95  LLNKANLTLSRGRRYGLVGRNGIGKSTLLRAIANGQVSGFHVEQEVRGDDTEALQSVLES 154

Query: 79  DDKKSFLRCSKIGFVYQEHRLLMDFSVIENIIFPQIIAGINHKTAYQRAMDLLSYMDMSQ 138
           D         ++ F+ +E                +++AG+  +  Y + +  L +    Q
Sbjct: 155 D-------TERLDFLAEE---------------KELLAGLTLEEIYDKILAGLGFTPEMQ 192

Query: 139 YANRRSSDISGGEQQRVAICRAIANKPLIILADEPTGNLDLK 180
              + +  +SGG + R+A+ RA+  KP ++L DEPT +LD+ 
Sbjct: 193 --LQPTKSLSGGWRMRLALARALFAKPDLLLLDEPTNHLDVV 232



 Score = 47.6 bits (113), Expect = 3e-06
 Identities = 46/224 (20%), Positives = 91/224 (40%), Gaps = 25/224 (11%)

Query: 3   SAEVLLLQNVKHSYRQVGKPFPVLENVHLSLKKGEIVALVSPSGTGKSTILHIAGLLEVP 62
           S   L +  V   Y      +   + + L  +    ++ V  +G GKST+L I      P
Sbjct: 359 SPPNLRISYVAFEY--TPSEYQWRKQLGLDRESDSRISRVGENGDGKSTLLKILKGDLTP 416

Query: 63  DQGNVIIANQLCNKLSDDKKSFLRCSKIGFVYQEHRLLMDFSVIENIIFPQIIAGINHKT 122
            +G V    +L               +I +  Q H   +D +V       +   G   + 
Sbjct: 417 TRGIVGRHPRL---------------RIKYFAQHHVDFLDKNVNAVDFMEKSFPGKTEEE 461

Query: 123 AYQRAMDLLSYMDMSQYANRRSSDISGGEQQRVAICRAIANKPLIILADEPTGNLDLKTA 182
             +R +         + A +  + +SGG++ RVA      N P +++ DEPT +LD  + 
Sbjct: 462 -IRRHLGSFGLS--GELALQSIASLSGGQKSRVAFAACTWNNPHLLVLDEPTNHLDRDS- 517

Query: 183 QQVFSILKYLVVRSGLAALIATHNHDLASQMDRQI-TIRDGMIA 225
             + ++ K L   +G   ++ +H+ +  S + +++  + DG + 
Sbjct: 518 --LGALAKALKNFNG-GVVLVSHDEEFISSLCKELWVVEDGKVT 558


>gnl|CDD|37566 KOG2355, KOG2355, KOG2355, Predicted ABC-type transport, ATPase
           component/CCR4 associated factor [General function
           prediction only, Transcription].
          Length = 291

 Score = 49.6 bits (118), Expect = 8e-07
 Identities = 53/216 (24%), Positives = 87/216 (40%), Gaps = 26/216 (12%)

Query: 24  PVLENVHLSLKKGEIVALVSPSGTGKSTILHIAGLLEVPDQGNVIIANQLCNKLSDDKKS 83
           P+  + +L L  G    LV  +G GK+T+L I     +   G V +        S    +
Sbjct: 28  PIFFDFNLDLPAGSRCLLVGANGAGKTTLLKILSGKHMVGGGVVQV-----LGRSAFHDT 82

Query: 84  FLRCS-----------KIGFVYQEHRLLMDFSVIENIIFPQIIAGINHKTAYQRAMDLLS 132
            L  S           K   +  E  L  D S  E++IF   + G +     +R   L+ 
Sbjct: 83  SLESSGDLSYLGGEWSKTVGIAGEVPLQGDISA-EHMIFG--VGGDD----PERREKLID 135

Query: 133 YMDMSQYANRRSSDISGGEQQRVAICRAIANKPLIILADEPTGNLDLKTAQQVFSILKYL 192
            +D+      R   +S G+++RV IC  +     ++L DE T +LD+     +   LK  
Sbjct: 136 ILDID--LRWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEVTVDLDVLARADLLEFLKEE 193

Query: 193 VVRSGLAALIATHNHD-LASQMDRQITIRDGMIADL 227
             + G   + ATH  D L +     + I+ G + D 
Sbjct: 194 CEQRGATIVYATHIFDGLETWPTHLVYIKSGKLVDN 229


>gnl|CDD|72997 cd03238, ABC_UvrA, The excision repair protein UvrA; Nucleotide
           excision repair in eubacteria is a process that repairs
           DNA damage by the removal of a 12-13-mer oligonucleotide
           containing the lesion.  Recognition and cleavage of the
           damaged DNA is a multistep ATP-dependent reaction that
           requires the UvrA, UvrB, and UvrC proteins.  Both UvrA
           and UvrB are ATPases, with UvrA having two ATP binding
           sites, which have the characteristic signature of the
           family of ABC proteins, and UvrB having one ATP binding
           site that is structurally related to that of helicases..
          Length = 176

 Score = 47.2 bits (112), Expect = 4e-06
 Identities = 43/196 (21%), Positives = 76/196 (38%), Gaps = 47/196 (23%)

Query: 26  LENVHLSLKKGEIVALVSPSGTGKSTILHIAGLLEVPDQGNVIIANQLCNKLSDDKKSFL 85
           L+N+ +S+    +V +   SG+GKST++            N  +      +L      F 
Sbjct: 11  LQNLDVSIPLNVLVVVTGVSGSGKSTLV------------NEGLYASGKARLISFLPKFS 58

Query: 86  RCSKIGFVYQEHRLLMDFSVIENIIFPQIIAGINHKTAYQRAMDLLSYMDMSQYANRRSS 145
           R +K+ F+ Q   L              I  G+ + T                   ++ S
Sbjct: 59  R-NKLIFIDQLQFL--------------IDVGLGYLTL-----------------GQKLS 86

Query: 146 DISGGEQQRVAICRAIAN--KPLIILADEPTGNLDLKTAQQVFSILKYLVVRSGLAALIA 203
            +SGGE QRV +   + +     + + DEP+  L  +   Q+  ++K L +  G   ++ 
Sbjct: 87  TLSGGELQRVKLASELFSEPPGTLFILDEPSTGLHQQDINQLLEVIKGL-IDLGNTVILI 145

Query: 204 THNHDLASQMDRQITI 219
            HN D+ S  D  I  
Sbjct: 146 EHNLDVLSSADWIIDF 161


>gnl|CDD|33894 COG4138, BtuD, ABC-type cobalamin transport system, ATPase
           component [Coenzyme metabolism].
          Length = 248

 Score = 46.5 bits (110), Expect = 6e-06
 Identities = 57/214 (26%), Positives = 95/214 (44%), Gaps = 30/214 (14%)

Query: 6   VLLLQNVKHSYRQVGKPFPVLENVHLSLKKGEIVALVSPSGTGKSTIL-HIAGLLEVPDQ 64
           ++ L +V  S R        L  +   ++ GEI+ LV P+G GKST+L  +AG+      
Sbjct: 3   LMQLNDVAESTR--------LGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMT--SGS 52

Query: 65  GNVIIANQLCNKLSDDKKSFLRCSKIGFVYQEHRLLMDFSVIENIIFPQIIAGINHKTAY 124
           G++  A Q     S  + +  R     ++ Q+        V   +   Q       KT  
Sbjct: 53  GSIQFAGQPLEAWSATELARHR----AYLSQQQTPPFAMPVWHYLTLHQ-----PDKTRT 103

Query: 125 QRAMDLLSYMDMSQYANRRSSDISGGEQQRV---AICRAI---AN-KPLIILADEPTGNL 177
           +   D+   + +     R ++ +SGGE QRV   A+   I   AN    ++L DEP  +L
Sbjct: 104 ELLNDVAGALALDDKLGRSTNQLSGGEWQRVRLAAVVLQITPDANPAGQLLLLDEPMNSL 163

Query: 178 DLKTAQQVFSILKYLVVRSGLAALIATH--NHDL 209
           D+     +  +L  L  + GLA ++++H  NH L
Sbjct: 164 DVAQQSALDRLLSAL-CQQGLAIVMSSHDLNHTL 196


>gnl|CDD|177053 CHL00131, ycf16, sulfate ABC transporter protein; Validated.
          Length = 252

 Score = 45.8 bits (109), Expect = 1e-05
 Identities = 48/215 (22%), Positives = 87/215 (40%), Gaps = 57/215 (26%)

Query: 23  FPVLENVHLSLKKGEIVALVSPSGTGKSTILH-IAG-----LLEVPDQGNVIIANQLCNK 76
             +L+ ++LS+ KGEI A++ P+G+GKST+   IAG     +LE    G+++   +    
Sbjct: 20  NEILKGLNLSINKGEIHAIMGPNGSGKSTLSKVIAGHPAYKILE----GDILFKGESILD 75

Query: 77  LSDDKKS---------------------FLRCSKIGFVYQEHRLLMDFSVIENIIFPQII 115
           L  ++++                     FLR       Y   R       ++ + F +II
Sbjct: 76  LEPEERAHLGIFLAFQYPIEIPGVSNADFLR-----LAYNSKRKFQGLPELDPLEFLEII 130

Query: 116 AGINHKTAYQRAMDLLSYMDMSQ-YANRRSSD-ISGGEQQRVAICRAIANKPLIILADEP 173
                        + L  + M   + +R  ++  SGGE++R  I +       + + DE 
Sbjct: 131 ------------NEKLKLVGMDPSFLSRNVNEGFSGGEKKRNEILQMALLDSELAILDET 178

Query: 174 TGNLD---LKTAQQVFSILKYLVVRSGLAALIATH 205
              LD   LK   +  + L      S  + ++ TH
Sbjct: 179 DSGLDIDALKIIAEGINKLM----TSENSIILITH 209


>gnl|CDD|35287 KOG0064, KOG0064, KOG0064, Peroxisomal long-chain acyl-CoA
           transporter, ABC superfamily [Lipid transport and
           metabolism].
          Length = 728

 Score = 45.0 bits (106), Expect = 2e-05
 Identities = 43/196 (21%), Positives = 77/196 (39%), Gaps = 32/196 (16%)

Query: 25  VLENVHLSLKKGEIVALVSPSGTGKSTILHIAGLLEVPDQGNVIIANQLCNKLSDDKKSF 84
           ++  +   ++ G  + +  P+G GKS++  I G L     G + I               
Sbjct: 497 LVPKLTFQIEPGMHLLITGPNGCGKSSLFRILGGLWPVYNGLLSIP-------------- 542

Query: 85  LRCSKIGFVYQEHRLLMDFSVI-ENIIFPQIIAGINHK-TAYQRAMDLLSYMDMSQYANR 142
            R + I ++ Q  R  M    + + II+P     +  K    Q    +L  + +     R
Sbjct: 543 -RPNNIFYIPQ--RPYMSGGTLRDQIIYPDSSEQMKRKGYTDQDLEAILDIVHLEHILQR 599

Query: 143 RS--------SDI-SGGEQQRVAICRAIANKPLIILADEPTGNLDLKTAQQVFSILKYLV 193
                      D+ SGGE+QR+ + R   ++P   L DE T  + +    ++F   K   
Sbjct: 600 EGGWDAVRDWKDVLSGGEKQRMGMARMFYHRPKYALLDECTSAVSIDVEGKIFQAAK--- 656

Query: 194 VRSGLAALIATHNHDL 209
             +G++ L  TH   L
Sbjct: 657 -DAGISLLSITHRPSL 671


>gnl|CDD|73061 cd03369, ABCC_NFT1, Domain 2 of NFT1 (New full-length MRP-type
           transporter 1).  NFT1 belongs to the MRP (mulrtidrug
           resisitance-associated protein) family of ABC
           transporters.  Some of the MRP members have five
           additional transmembrane segments in their N-terminas,
           but the function of these additional membrane-spanning
           domains is not clear.  The MRP was found in the
           multidrug-resisting lung cancer cell in which
           p-glycoprotein was not overexpressed.  MRP exports
           glutathione by drug stimulation, as well as, certain
           substrates in conjugated forms with anions such as
           glutathione, glucuronate, and sulfate..
          Length = 207

 Score = 44.5 bits (105), Expect = 2e-05
 Identities = 46/208 (22%), Positives = 87/208 (41%), Gaps = 31/208 (14%)

Query: 24  PVLENVHLSLKKGEIVALVSPSGTGKSTI-LHIAGLLEVPDQGNVIIANQLCNKLSDDKK 82
           PVL+NV   +K GE + +V  +G GKST+ L +   LE  ++G + I     + +  +  
Sbjct: 22  PVLKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRFLE-AEEGKIEIDGIDISTIPLED- 79

Query: 83  SFLRCSKIGFVYQEHRLLMDFSVIENIIFPQIIAGINHKTAYQRAMDLLSYMDMSQYANR 142
             LR S +  + Q+  L      I + + P           +        Y D   Y   
Sbjct: 80  --LR-SSLTIIPQDPTLFS--GTIRSNLDP-----------FDE------YSDEEIYGAL 117

Query: 143 RSS----DISGGEQQRVAICRAIANKPLIILADEPTGNLDLKTAQQVFSILKYLVVRSGL 198
           R S    ++S G++Q + + RA+  +P +++ DE T ++D  T   +   ++     +  
Sbjct: 118 RVSEGGLNLSQGQRQLLCLARALLKRPRVLVLDEATASIDYATDALIQKTIREEF--TNS 175

Query: 199 AALIATHNHDLASQMDRQITIRDGMIAD 226
             L   H        D+ + +  G + +
Sbjct: 176 TILTIAHRLRTIIDYDKILVMDAGEVKE 203


>gnl|CDD|73030 cd03271, ABC_UvrA_II, The excision repair protein UvrA domain II;
           Nucleotide excision repair in eubacteria is a process
           that repairs DNA damage by the removal of a 12-13-mer
           oligonucleotide containing the lesion.  Recognition and
           cleavage of the damaged DNA is a multistep ATP-dependent
           reaction that requires the UvrA, UvrB, and UvrC
           proteins.  Both UvrA and UvrB are ATPases, with UvrA
           having two ATP binding sites, which have the
           characteristic signature of the family of ABC proteins
           and UvrB having one ATP binding site that is
           structurally related to that of helicases..
          Length = 261

 Score = 44.0 bits (104), Expect = 3e-05
 Identities = 51/236 (21%), Positives = 96/236 (40%), Gaps = 54/236 (22%)

Query: 26  LENVHLSLKKGEIVALVSPSGTGKSTILH------IAGLL----EVPDQGNVIIANQLCN 75
           L+N+ + +  G +  +   SG+GKS++++      +A  L    E P   + I   +  +
Sbjct: 11  LKNIDVDIPLGVLTCVTGVSGSGKSSLINDTLYPALARRLHLKKEQPGNHDRIEGLEHID 70

Query: 76  KLSD---------------------DKKSFLRCSKI-GFVYQEHRL-----------LMD 102
           K+                       D+   L C    G  Y    L           ++D
Sbjct: 71  KVIVIDQSPIGRTPRSNPATYTGVFDEIRELFCEVCKGKRYNRETLEVRYKGKSIADVLD 130

Query: 103 FSVIENIIFPQIIAGINHKTAYQRAMDL-LSYMDMSQYANRRSSDISGGEQQRVAICRAI 161
            +V E + F + I  I  K   Q   D+ L Y+ + Q     ++ +SGGE QR+ + + +
Sbjct: 131 MTVEEALEFFENIPKIARKL--QTLCDVGLGYIKLGQ----PATTLSGGEAQRIKLAKEL 184

Query: 162 ANK---PLIILADEPTGNLDLKTAQQVFSILKYLVVRSGLAALIATHNHDLASQMD 214
           + +     + + DEPT  L     +++  +L+ LV + G   ++  HN D+    D
Sbjct: 185 SKRSTGKTLYILDEPTTGLHFHDVKKLLEVLQRLVDK-GNTVVVIEHNLDVIKCAD 239


>gnl|CDD|72981 cd03222, ABC_RNaseL_inhibitor, The ABC ATPase RNase L inhibitor
           (RLI) is a key enzyme in ribosomal biogenesis, formation
           of translation preinitiation complexes, and assembly of
           HIV capsids.  RLI's are not transport proteins, and thus
           cluster with a group of soluble proteins that lack the
           transmembrane components commonly found in other members
           of the family.  Structurally, RLI's have an N-terminal
           Fe-S domain and two nucleotide-binding domains, which
           are arranged to form two composite active sites in their
           interface cleft.  RLI is one of the most conserved
           enzymes between archaea and eukaryotes with a sequence
           identity more than 48%.  The high degree of evolutionary
           conservation suggests that RLI performs a central role
           in archaeal and eukaryotic physiology..
          Length = 177

 Score = 42.7 bits (100), Expect = 9e-05
 Identities = 29/112 (25%), Positives = 48/112 (42%), Gaps = 5/112 (4%)

Query: 111 FPQIIAGINHKTAYQRAMDLLSYMDMSQYANRRSSDISGGEQQRVAICRAIANKPLIILA 170
             +I+AG           D ++ +   QY      D+SGGE QRVAI  A+       L 
Sbjct: 41  AVKILAGQLIPNGDNDEWDGITPVYKPQYI-----DLSGGELQRVAIAAALLRNATFYLF 95

Query: 171 DEPTGNLDLKTAQQVFSILKYLVVRSGLAALIATHNHDLASQMDRQITIRDG 222
           DEP+  LD++        ++ L       AL+  H+  +   +  +I + +G
Sbjct: 96  DEPSAYLDIEQRLNAARAIRRLSEEGKKTALVVEHDLAVLDYLSDRIHVFEG 147



 Score = 35.7 bits (82), Expect = 0.009
 Identities = 13/35 (37%), Positives = 23/35 (65%)

Query: 33 LKKGEIVALVSPSGTGKSTILHIAGLLEVPDQGNV 67
          +K+GE++ +V P+GTGK+T + I     +P+  N 
Sbjct: 22 VKEGEVIGIVGPNGTGKTTAVKILAGQLIPNGDND 56


>gnl|CDD|35283 KOG0060, KOG0060, KOG0060, Long-chain acyl-CoA transporter, ABC
           superfamily (involved in peroxisome organization and
           biogenesis) [Lipid transport and metabolism, General
           function prediction only].
          Length = 659

 Score = 41.1 bits (96), Expect = 2e-04
 Identities = 35/178 (19%), Positives = 70/178 (39%), Gaps = 25/178 (14%)

Query: 25  VLENVHLSLKKGEIVALVSPSGTGKSTILHIAGLLEVPDQGNVIIANQLCNKLSDDKKSF 84
           ++EN+ L +  G+ + +  PSG GK+++L + G L     G +              K  
Sbjct: 450 LIENLSLEVPSGQNLLITGPSGCGKTSLLRVLGGLWPSTGGKL-------------TKPT 496

Query: 85  LRCSKIGFVYQEHRLLMDFSVIENIIFPQIIAGINHKTAY-QRAMDLLSYMDMSQYANRR 143
               K  F   +   +   ++ + +I+P     ++ K+A  +  + +L  + +     R 
Sbjct: 497 DGGPKDLFFLPQRPYMTLGTLRDQVIYPLKAEDMDSKSASDEDILRILENVQLGHLLERE 556

Query: 144 -----------SSDISGGEQQRVAICRAIANKPLIILADEPTGNLDLKTAQQVFSILK 190
                         +S GEQQR+A  R   +KP   + DE T  +       ++   +
Sbjct: 557 GGLDQQVDWDWMDVLSPGEQQRLAFARLFYHKPKFAILDECTSAVTEDVEGALYRKCR 614


>gnl|CDD|29988 cd01122, GP4d_helicase, GP4d_helicase is a homohexameric 5'-3'
          helicases. Helicases couple NTP hydrolysis to the
          unwinding of nucleic acid duplexes into their component
          strands..
          Length = 271

 Score = 40.3 bits (94), Expect = 4e-04
 Identities = 17/39 (43%), Positives = 25/39 (64%)

Query: 15 SYRQVGKPFPVLENVHLSLKKGEIVALVSPSGTGKSTIL 53
          S  +V  PFPVL  +   L+KGE++ L + +G GK+T L
Sbjct: 9  SNEEVWWPFPVLNKLTKGLRKGELIILTAGTGVGKTTFL 47


>gnl|CDD|72986 cd03227, ABC_Class2, ABC-type Class 2 contains systems involved in
           cellular processes other than transport.  These families
           are characterised by the fact that the ABC subunit is
           made up of duplicated, fused ABC modules (ABC2).  No
           known transmembrane proteins or domains are associated
           with these proteins..
          Length = 162

 Score = 40.3 bits (94), Expect = 5e-04
 Identities = 24/79 (30%), Positives = 39/79 (49%), Gaps = 7/79 (8%)

Query: 147 ISGGEQQRVAICRAIAN-----KPLIILADEPTGNLDLKTAQQVFSILKYLVVRSGLAAL 201
           +SGGE++  A+   +A      +PL IL DE    LD +  Q +   +   +V  G   +
Sbjct: 78  LSGGEKELSALALILALASLKPRPLYIL-DEIDRGLDPRDGQALAEAILEHLV-KGAQVI 135

Query: 202 IATHNHDLASQMDRQITIR 220
           + TH  +LA   D+ I I+
Sbjct: 136 VITHLPELAELADKLIHIK 154


>gnl|CDD|73038 cd03279, ABC_sbcCD, SbcCD and other Mre11/Rad50 (MR) complexes are
           implicated in the metabolism of DNA ends. They cleave
           ends sealed by hairpin structures and are thought to
           play a role in removing protein bound to DNA termini..
          Length = 213

 Score = 40.2 bits (94), Expect = 5e-04
 Identities = 36/201 (17%), Positives = 73/201 (36%), Gaps = 30/201 (14%)

Query: 32  SLKKGEIVALVSPSGTGKSTILHIAGLLEVPDQGNVIIANQLCNKLSDDKKSFLRCSKIG 91
            L    +  +  P+G GKSTIL               I   L  K     +     S   
Sbjct: 24  GLDNNGLFLICGPTGAGKSTILD-------------AITYALYGKTPRYGRQENLRSVFA 70

Query: 92  FVYQEHRLLMDFSVIENIIFPQII--AGINHKTAYQRAMDLLSYMDMSQYANRRSSDISG 149
                  +   F +       ++    G+++   + R + LL   +  ++  R  S +SG
Sbjct: 71  PGEDTAEVSFTFQL--GGKKYRVERSRGLDYDQ-FTRIV-LLPQGEFDRFLARPVSTLSG 126

Query: 150 GEQQRVAICRAIANKPLI----------ILADEPTGNLDLKTAQQVFSILKYLVVRSGLA 199
           GE    ++  A+A   ++          +  DE  G LD +  + V + L+ L+      
Sbjct: 127 GETFLASLSLALALSEVLQNRGGARLEALFIDEGFGTLDPEALEAVATALE-LIRTENRM 185

Query: 200 ALIATHNHDLASQMDRQITIR 220
             + +H  +L  ++ +++ + 
Sbjct: 186 VGVISHVEELKERIPQRLEVI 206


>gnl|CDD|73048 cd03289, ABCC_CFTR2, The CFTR subfamily domain 2.  The cystic
           fibrosis transmembrane regulator (CFTR), the product of
           the gene mutated in patients with cystic fibrosis, has
           adapted the ABC transporter structural motif to form a
           tightly regulated anion channel at the apical surface of
           many epithelia.  Use of the term assembly of a
           functional ion channel implies the coming together of
           subunits or at least smaller not-yet functional
           components of the active whole.  In fact, on the basis
           of current knowledge only the CFTR polypeptide itself is
           required to form an ATP- and protein kinase A-dependent
           low-conductance chloride channel of the type present in
           the apical membrane of many epithelial cells.  CFTR
           displays the typical organization (IM-ABC)2 and carries
           a characteristic hydrophilic R-domain that separates
           IM1-ABC1 from IM2-ABC2..
          Length = 275

 Score = 39.6 bits (92), Expect = 7e-04
 Identities = 46/204 (22%), Positives = 94/204 (46%), Gaps = 12/204 (5%)

Query: 25  VLENVHLSLKKGEIVALVSPSGTGKSTILHIAGLLEVPDQGNVIIANQLCNKLSDDK--K 82
           VLEN+  S+  G+ V L+  +G+GKST+L  A L  +  +G++ I     N +   K  K
Sbjct: 19  VLENISFSISPGQRVGLLGRTGSGKSTLLS-AFLRLLNTEGDIQIDGVSWNSVPLQKWRK 77

Query: 83  SFLRCSKIGFVYQ-EHRLLMD-FSVIENIIFPQIIAGINHKTAYQRAMDLLSYMDMSQYA 140
           +F    +  F++    R  +D +    +    ++   +  K+  ++    L ++ +    
Sbjct: 78  AFGVIPQKVFIFSGTFRKNLDPYGKWSDEEIWKVAEEVGLKSVIEQFPGQLDFVLVDG-- 135

Query: 141 NRRSSDISGGEQQRVAICRAIANKPLIILADEPTGNLDLKTAQQVFSILKYLVVRSGLAA 200
                 +S G +Q + + R++ +K  I+L DEP+ +LD  T Q +   LK     +    
Sbjct: 136 ---GCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPITYQVIRKTLKQAF--ADCTV 190

Query: 201 LIATHNHDLASQMDRQITIRDGMI 224
           +++ H  +   +  R + I +  +
Sbjct: 191 ILSEHRIEAMLECQRFLVIEENKV 214


>gnl|CDD|30768 COG0419, SbcC, ATPase involved in DNA repair [DNA replication,
           recombination, and repair].
          Length = 908

 Score = 39.3 bits (91), Expect = 9e-04
 Identities = 23/91 (25%), Positives = 42/91 (46%), Gaps = 11/91 (12%)

Query: 139 YANRRSSDISGGEQQRVAICRAIA---------NKPLIILADEPTGNLDLKTAQQVFSIL 189
              R    +SGGE+   ++   +A            L+ L DEP G LD +  +++  IL
Sbjct: 808 GEVRPIKTLSGGERFLASLALRLALSDLLQGRARLELLFL-DEPFGTLDEERLEKLAEIL 866

Query: 190 KYLVVRSGLAALIATHNHDLASQMDRQITIR 220
           + L +  G   +I +H  +L  + D +I ++
Sbjct: 867 EEL-LSDGRQIIIISHVEELKERADVRIRVK 896


>gnl|CDD|73029 cd03270, ABC_UvrA_I, The excision repair protein UvrA domain I;
           Nucleotide excision repair in eubacteria is a process
           that repairs DNA damage by the removal of a 12-13-mer
           oligonucleotide containing the lesion.  Recognition and
           cleavage of the damaged DNA is a multistep ATP-dependent
           reaction that requires the UvrA, UvrB, and UvrC
           proteins.  Both UvrA and UvrB are ATPases, with UvrA
           having two ATP binding sites, which have the
           characteristic signature of the family of ABC proteins,
           and UvrB having one ATP binding site that is
           structurally related to that of helicases..
          Length = 226

 Score = 38.2 bits (89), Expect = 0.002
 Identities = 48/219 (21%), Positives = 92/219 (42%), Gaps = 43/219 (19%)

Query: 26  LENVHLSLKKGEIVALVSPSGTGKSTIL---------------------HIAGLLEVPDQ 64
           L+NV + + + ++V +   SG+GKS++                         G ++ PD 
Sbjct: 11  LKNVDVDIPRNKLVVITGVSGSGKSSLAFDTIYAEGQRRYVESLSAYARQFLGQMDKPDV 70

Query: 65  GNVIIANQLCNKLSDDKKSFLRC--SKIGFVYQEHRLLMDFSVIENIIFPQIIAGINHKT 122
            ++     L   ++ D+K+  R   S +G V + +  L        ++F ++  GI  + 
Sbjct: 71  DSI---EGLSPAIAIDQKTTSRNPRSTVGTVTEIYDYL-------RLLFARV--GIRERL 118

Query: 123 AYQRAMDLLSYMDMSQYANRRSSDISGGEQQRVAICRAIANK--PLIILADEPTGNLDLK 180
            +   + L  Y+ +S    R +  +SGGE QR+ +   I +    ++ + DEP+  L  +
Sbjct: 119 GFLVDVGL-GYLTLS----RSAPTLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHPR 173

Query: 181 TAQQVFSILKYLVVRSGLAALIATHNHDLASQMDRQITI 219
              ++   LK L    G   L+  H+ D     D  I I
Sbjct: 174 DNDRLIETLKRL-RDLGNTVLVVEHDEDTIRAADHVIDI 211


>gnl|CDD|30527 COG0178, UvrA, Excinuclease ATPase subunit [DNA replication,
           recombination, and repair].
          Length = 935

 Score = 36.3 bits (84), Expect = 0.008
 Identities = 37/119 (31%), Positives = 58/119 (48%), Gaps = 13/119 (10%)

Query: 101 MDFSVIENIIFPQIIAGINHKTAYQRAMDL-LSYMDMSQYANRRSSDISGGEQQRVAICR 159
           +D +V E + F + I  I  K   Q  +D+ L Y+ + Q A    + +SGGE QRV + +
Sbjct: 782 LDMTVEEALEFFEAIPKIARKL--QTLVDVGLGYIKLGQPA----TTLSGGEAQRVKLAK 835

Query: 160 AIA----NKPLIILADEPTGNLDLKTAQQVFSILKYLVVRSGLAALIATHNHDLASQMD 214
            ++     K L IL DEPT  L     +++  +L  L V  G   ++  HN D+    D
Sbjct: 836 ELSKRSTGKTLYIL-DEPTTGLHFDDIKKLLEVLHRL-VDKGNTVIVIEHNLDVIKTAD 892



 Score = 32.1 bits (73), Expect = 0.12
 Identities = 33/123 (26%), Positives = 53/123 (43%), Gaps = 12/123 (9%)

Query: 101 MDFSVIENIIFPQIIAGINHKTAYQRAMDL-LSYMDMSQYANRRSSDISGGEQQRVAICR 159
           +  S  E  I   I+  I  K      +D+ L Y+ +S    R +  +SGGE QR+ +  
Sbjct: 441 LKLSEKEKKIAEPILKEI--KERLGFLVDVGLGYLTLS----RSAGTLSGGEAQRIRLAT 494

Query: 160 AIANK---PLIILADEPTGNLDLKTAQQVFSILKYLVVRSGLAALIATHNHDLASQMDRQ 216
            I +     L +L DEP+  L  +  +++   LK L    G   ++  H+ D     D  
Sbjct: 495 QIGSGLTGVLYVL-DEPSIGLHQRDNERLIETLKRL-RDLGNTVIVVEHDEDTIRAADHI 552

Query: 217 ITI 219
           I I
Sbjct: 553 IDI 555



 Score = 29.8 bits (67), Expect = 0.59
 Identities = 9/27 (33%), Positives = 19/27 (70%)

Query: 26 LENVHLSLKKGEIVALVSPSGTGKSTI 52
          L+N+ L + + ++V +   SG+GKS++
Sbjct: 16 LKNIDLEIPRNKLVVITGLSGSGKSSL 42



 Score = 26.3 bits (58), Expect = 7.6
 Identities = 9/29 (31%), Positives = 18/29 (62%)

Query: 26  LENVHLSLKKGEIVALVSPSGTGKSTILH 54
           L+N+ + +  G    +   SG+GKST+++
Sbjct: 617 LKNIDVEIPLGVFTCVTGVSGSGKSTLIN 645


>gnl|CDD|72999 cd03240, ABC_Rad50, The catalytic domains of Rad50 are similar to
           the ATP-binding cassette of ABC transporters, but are
           not associated with membrane-spanning domains.  The
           conserved ATP-binding motifs common to Rad50 and the ABC
           transporter family include the Walker A and Walker B
           motifs, the Q loop, a histidine residue in the switch
           region, a D-loop, and a conserved LSGG sequence.  This
           conserved sequence, LSGG, is the most specific and
           characteristic motif of this family and is thus known as
           the ABC signature sequence..
          Length = 204

 Score = 34.8 bits (80), Expect = 0.020
 Identities = 35/193 (18%), Positives = 74/193 (38%), Gaps = 30/193 (15%)

Query: 38  IVALVSPSGTGKSTILHIAGLLEVPDQGNVIIANQLCNKL--SDDKKSFLRCSKIGFVYQ 95
           +  +V  +G GK+TI+         +            KL    + ++ ++ +      +
Sbjct: 24  LTLIVGQNGAGKTTIIEALKYALTGELPPNSKGGAHDPKLIREGEVRAQVKLAFENANGK 83

Query: 96  EHRLLMDFSVIENIIFPQIIAGINHKTAYQRAMDLLSYMDMSQYANRRSSDISGGEQQ-- 153
           ++ +    +++EN+IF            +Q   +    +DM           SGGE+   
Sbjct: 84  KYTITRSLAILENVIF-----------CHQGESNWP-LLDMRGR-------CSGGEKVLA 124

Query: 154 ----RVAICRAI-ANKPLIILADEPTGNLDL-KTAQQVFSILKYLVVRSGLAALIATHNH 207
               R+A+     +N  ++ L DEPT NLD     + +  I++    +     ++ TH+ 
Sbjct: 125 SLIIRLALAETFGSNCGILAL-DEPTTNLDEENIEESLAEIIEERKSQKNFQLIVITHDE 183

Query: 208 DLASQMDRQITIR 220
           +L    D    + 
Sbjct: 184 ELVDAADHIYRVE 196


>gnl|CDD|37584 KOG2373, KOG2373, KOG2373, Predicted mitochondrial DNA helicase
           twinkle [Replication, recombination and repair].
          Length = 514

 Score = 34.2 bits (78), Expect = 0.033
 Identities = 16/45 (35%), Positives = 22/45 (48%)

Query: 9   LQNVKHSYRQVGKPFPVLENVHLSLKKGEIVALVSPSGTGKSTIL 53
           L N +       K FPVL       + GE+  L  P+G+GK+T L
Sbjct: 246 LLNTERVVGFQWKRFPVLNKYLKGHRPGELTVLTGPTGSGKTTFL 290


>gnl|CDD|146027 pfam03193, DUF258, Protein of unknown function, DUF258. 
          Length = 161

 Score = 33.3 bits (77), Expect = 0.058
 Identities = 15/45 (33%), Positives = 19/45 (42%), Gaps = 7/45 (15%)

Query: 16 YRQVGKPFPVL----ENVHLSLK---KGEIVALVSPSGTGKSTIL 53
          Y  +G    V+          LK   KG+   L   SG GKST+L
Sbjct: 8  YEAIGYEVLVVSAKTGEGIEELKPLLKGKTSVLAGQSGVGKSTLL 52


>gnl|CDD|29991 cd01125, repA, Hexameric Replicative Helicase RepA.  RepA is
           encoded by a plasmid, which is found in most Gram
           negative bacteria. RepA is a 5'-3' DNA helicase which
           can utilize ATP, GTP and CTP to a lesser extent..
          Length = 239

 Score = 31.9 bits (72), Expect = 0.16
 Identities = 26/121 (21%), Positives = 45/121 (37%), Gaps = 26/121 (21%)

Query: 36  GEIVALVSPSGTGKSTI-----LHIA-------GLLEVPDQGNVIIANQLCNKLSDDKKS 83
           G + ALV+P GTGKS++     L +A       G L+V + G V+  +       D ++ 
Sbjct: 1   GYVSALVAPGGTGKSSLLLVLALAMALGKNLFGGGLKVTEPGRVVYLS-----AEDPREE 55

Query: 84  FLR-----CSKIGFVYQEHRLLMDFSVIENIIFPQIIAGINHKTAYQRAMDLLSYMDMSQ 138
             R        +       RL +D   I+ I     IA             ++  + + +
Sbjct: 56  IHRRLEAILQHLEPDDAGDRLFIDSGRIQPI----SIAREGRIIVVPEFERIIEQLLIRR 111

Query: 139 Y 139
            
Sbjct: 112 I 112


>gnl|CDD|32462 COG2308, COG2308, Uncharacterized conserved protein [Function
           unknown].
          Length = 488

 Score = 31.8 bits (72), Expect = 0.19
 Identities = 14/29 (48%), Positives = 18/29 (62%)

Query: 53  LHIAGLLEVPDQGNVIIANQLCNKLSDDK 81
           L + GL+E    GNV IAN L   ++DDK
Sbjct: 296 LGVPGLVEAYRAGNVTIANALGTGVADDK 324


>gnl|CDD|30543 COG0194, Gmk, Guanylate kinase [Nucleotide transport and
          metabolism].
          Length = 191

 Score = 31.6 bits (72), Expect = 0.20
 Identities = 10/22 (45%), Positives = 15/22 (68%)

Query: 33 LKKGEIVALVSPSGTGKSTILH 54
          + KG ++ L  PSG GKST++ 
Sbjct: 1  MSKGLLIVLSGPSGVGKSTLVK 22


>gnl|CDD|57925 cd01854, YjeQ_engC, YjeQ/EngC.  YjeQ (YloQ in Bacillus subtilis)
           represents a protein family whose members are broadly
           conserved in bacteria and have been shown to be
           essential to the growth of E. coli and B. subtilis.
           Proteins of the YjeQ family contain all sequence motifs
           typical of the vast class of P-loop-containing GTPases,
           but show a circular permutation, with a G4-G1-G3 pattern
           of motifs as opposed to the regular G1-G3-G4 pattern
           seen in most GTPases. All YjeQ family proteins display a
           unique domain architecture, which includes an N-terminal
           OB-fold RNA-binding domain, the central permuted GTPase
           domain, and a zinc knuckle-like C-terminal cysteine
           domain. This domain architecture suggests a role for
           YjeQ as a regulator of translation..
          Length = 287

 Score = 30.1 bits (68), Expect = 0.50
 Identities = 10/19 (52%), Positives = 13/19 (68%)

Query: 35  KGEIVALVSPSGTGKSTIL 53
           KG+   LV  SG GKST++
Sbjct: 160 KGKTSVLVGQSGVGKSTLI 178


>gnl|CDD|33398 COG3598, RepA, RecA-family ATPase [DNA replication, recombination,
           and repair].
          Length = 402

 Score = 29.2 bits (65), Expect = 0.88
 Identities = 16/77 (20%), Positives = 29/77 (37%), Gaps = 17/77 (22%)

Query: 33  LKKGEIVALVSPSGTGKSTILHIAGLL----------EVPDQGNVIIANQLCNKLSDDKK 82
            +KG +  L   SG GK+T+L    +           +V + G V+  +     L   ++
Sbjct: 86  FRKGYVSILYGDSGVGKTTLLLYLCIALAAGKNLFGNKVKEPGKVLYVS-----LELYRE 140

Query: 83  SFLRCSKIGFVYQEHRL 99
             L   ++  V     L
Sbjct: 141 DILE--RLEPVRARMGL 155


>gnl|CDD|31395 COG1202, COG1202, Superfamily II helicase, archaea-specific
           [General function prediction only].
          Length = 830

 Score = 29.2 bits (65), Expect = 0.89
 Identities = 16/52 (30%), Positives = 26/52 (50%), Gaps = 8/52 (15%)

Query: 29  VHLSLKKGEIVALVSPSGTGKSTILHIAGLLEVPDQGN--------VIIANQ 72
           V   L +GE + +VS + +GK+ I  +AG+  +   G         V +ANQ
Sbjct: 225 VEAGLLEGENLLVVSATASGKTLIGELAGIPRLLSGGKKMLFLVPLVALANQ 276


>gnl|CDD|73180 cd00071, GMPK, Guanosine monophosphate kinase (GMPK, EC 2.7.4.8),
          also known as guanylate kinase (GKase), catalyzes the
          reversible phosphoryl transfer from adenosine
          triphosphate (ATP) to guanosine monophosphate (GMP) to
          yield adenosine diphosphate (ADP) and guanosine
          diphosphate (GDP). It plays an essential role in the
          biosynthesis of guanosine triphosphate (GTP). This
          enzyme is also important for the activation of some
          antiviral and anticancer agents, such as acyclovir,
          ganciclovir, carbovir, and thiopurines..
          Length = 137

 Score = 29.3 bits (66), Expect = 0.99
 Identities = 13/28 (46%), Positives = 16/28 (57%), Gaps = 2/28 (7%)

Query: 38 IVALVSPSGTGKSTILHIAGLLEVPDQG 65
          ++ L  PSG GKST+L    LLE  D  
Sbjct: 1  LIVLSGPSGVGKSTLLKR--LLEEFDPN 26


>gnl|CDD|73044 cd03285, ABC_MSH2_euk, MutS2 homolog in eukaryotes.  The MutS
           protein initiates DNA mismatch repair by recognizing
           mispaired and unpaired bases embedded in duplex DNA and
           activating endo- and exonucleases to remove the
           mismatch.  Members of the MutS family possess C-terminal
           domain with a conserved ATPase activity that belongs to
           the ATP binding cassette (ABC) superfamily.  MutS
           homologs (MSH) have been identified in most prokaryotic
           and all eukaryotic organisms examined.  Prokaryotes have
           two homologs (MutS1 and MutS2), whereas seven MSH
           proteins (MSH1 to MSH7) have been identified in
           eukaryotes.  The homodimer MutS1 and heterodimers
           MSH2-MSH3 and MSH2-MSH6 are primarily involved in
           mitotic mismatch repair, whereas MSH4-MSH5 is involved
           in resolution of Holliday junctions during meiosis.  All
           members of the MutS family contain the highly conserved
           Walker A/B ATPase domain, and many share a common
           mechanism of action.  MutS1, MSH2-MSH3, MSH2-MSH6, and
           MSH4-MSH5 dimerize to form sliding clamps, and
           recognition of specific DNA structures or lesions
           results in ADP/ATP exchange..
          Length = 222

 Score = 28.7 bits (64), Expect = 1.3
 Identities = 15/66 (22%), Positives = 29/66 (43%)

Query: 156 AICRAIANKPLIILADEPTGNLDLKTAQQVFSILKYLVVRSGLAALIATHNHDLASQMDR 215
           AI ++     LII+ +   G          ++I +Y+  +     L ATH H+L +  D 
Sbjct: 102 AILKSATENSLIIIDELGRGTSTYDGFGLAWAIAEYIATQIKCFCLFATHFHELTALADE 161

Query: 216 QITIRD 221
              +++
Sbjct: 162 VPNVKN 167


>gnl|CDD|34791 COG5192, BMS1, GTP-binding protein required for 40S ribosome
          biogenesis [Translation, ribosomal structure and
          biogenesis].
          Length = 1077

 Score = 28.6 bits (63), Expect = 1.4
 Identities = 11/16 (68%), Positives = 14/16 (87%)

Query: 38 IVALVSPSGTGKSTIL 53
          IVA+V P GTGKST++
Sbjct: 71 IVAVVGPPGTGKSTLI 86


>gnl|CDD|31356 COG1162, COG1162, Predicted GTPases [General function prediction
           only].
          Length = 301

 Score = 28.7 bits (64), Expect = 1.4
 Identities = 9/19 (47%), Positives = 13/19 (68%)

Query: 35  KGEIVALVSPSGTGKSTIL 53
            G+I  L+  SG GKST++
Sbjct: 163 AGKITVLLGQSGVGKSTLI 181


>gnl|CDD|111407 pfam02504, FA_synthesis, Fatty acid synthesis protein.  The plsX
           gene is part of the bacterial fab gene cluster which
           encodes several key fatty acid biosynthetic enzymes. The
           exact function of the plsX protein in fatty acid
           synthesis is unknown.
          Length = 322

 Score = 28.5 bits (64), Expect = 1.5
 Identities = 14/44 (31%), Positives = 22/44 (50%), Gaps = 7/44 (15%)

Query: 167 IILADEPTGNLDLKTAQQVFSILKYLV-------VRSGLAALIA 203
           +I+ D  TGN+ LKTA+ V   +  ++         S L AL+ 
Sbjct: 221 VIVCDGFTGNVILKTAEGVAKFIGSILKDELKRSKLSKLGALLL 264


>gnl|CDD|133370 cd04170, EF-G_bact, Elongation factor G (EF-G) subfamily.
          Translocation is mediated by EF-G (also called
          translocase).  The structure of EF-G closely resembles
          that of the complex between EF-Tu and tRNA.  This is an
          example of molecular mimicry; a protein domain evolved
          so that it mimics the shape of a tRNA molecule.  EF-G
          in the GTP form binds to the ribosome, primarily
          through the interaction of its EF-Tu-like domain with
          the 50S subunit.  The binding of EF-G to the ribosome
          in this manner stimulates the GTPase activity of EF-G. 
          On GTP hydrolysis, EF-G undergoes a conformational
          change that forces its arm deeper into the A site on
          the 30S subunit.  To accommodate this domain, the
          peptidyl-tRNA in the A site moves to the P site,
          carrying the mRNA and the deacylated tRNA with it.  The
          ribosome may be prepared for these rearrangements by
          the initial binding of EF-G as well.  The dissociation
          of EF-G leaves the ribosome ready to accept the next
          aminoacyl-tRNA into the A site.  This group contains
          only bacterial members.
          Length = 268

 Score = 28.3 bits (64), Expect = 2.0
 Identities = 10/25 (40%), Positives = 16/25 (64%), Gaps = 4/25 (16%)

Query: 39 VALVSPSGTGKST----ILHIAGLL 59
          +ALV  SG+GK+T    +L+  G +
Sbjct: 2  IALVGHSGSGKTTLAEALLYATGAI 26


>gnl|CDD|143799 pfam00006, ATP-synt_ab, ATP synthase alpha/beta family,
          nucleotide-binding domain.  This family includes the
          ATP synthase alpha and beta subunits, the ATP synthase
          associated with flagella and the termination factor
          Rho.
          Length = 213

 Score = 28.2 bits (64), Expect = 2.1
 Identities = 8/20 (40%), Positives = 13/20 (65%)

Query: 35 KGEIVALVSPSGTGKSTILH 54
          KG+ + +   SGTGK+ +L 
Sbjct: 14 KGQRIGIFGGSGTGKTVLLG 33


>gnl|CDD|30859 COG0513, SrmB, Superfamily II DNA and RNA helicases [DNA
           replication, recombination, and repair / Transcription /
           Translation, ribosomal structure and biogenesis].
          Length = 513

 Score = 27.8 bits (61), Expect = 2.2
 Identities = 18/69 (26%), Positives = 33/69 (47%), Gaps = 7/69 (10%)

Query: 153 QRVAICRAIANKPLIILADEPTGNLDLKTAQQVFSILKYLVV---RSGLAALIATHNHDL 209
           Q  AI   +A + ++  A   TG    KTA  +  +L+ ++    R  ++ALI     +L
Sbjct: 56  QLAAIPLILAGRDVLGQAQTGTG----KTAAFLLPLLQKILKSVERKYVSALILAPTREL 111

Query: 210 ASQMDRQIT 218
           A Q+  ++ 
Sbjct: 112 AVQIAEELR 120


>gnl|CDD|73047 cd03288, ABCC_SUR2, The SUR domain 2.  The sulfonylurea receptor
           SUR is an ATP binding cassette (ABC) protein of the
           ABCC/MRP family.  Unlike other ABC proteins, it has no
           intrinsic transport function, neither active nor
           passive, but associates with the potassium channel
           proteins Kir6.1 or Kir6.2 to form the ATP-sensitive
           potassium (K(ATP)) channel.  Within the channel complex,
           SUR serves as a regulatory subunit that fine-tunes the
           gating of Kir6.x in response to alterations in cellular
           metabolism.  It constitutes a major pharmaceutical
           target as it binds numerous drugs, K(ATP) channel
           openers and blockers, capable of up- or down-regulating
           channel activity..
          Length = 257

 Score = 28.1 bits (62), Expect = 2.3
 Identities = 43/207 (20%), Positives = 87/207 (42%), Gaps = 27/207 (13%)

Query: 24  PVLENVHLSLKKGEIVALVSPSGTGKSTI-LHIAGLLEVPDQGNVIIANQLCNKLSDD-- 80
           PVL++V   +K G+ V +   +G+GKS++ L    ++++ D G ++I     +KL     
Sbjct: 35  PVLKHVKAYIKPGQKVGICGRTGSGKSSLSLAFFRMVDIFD-GKIVIDGIDISKLPLHTL 93

Query: 81  --------KKSFLRCSKIGFVYQEHRLLMDFSVIENIIFPQIIAGINHKTAYQRAMDLLS 132
                   +   L    I F         D  + E +   Q+    N   +    +D + 
Sbjct: 94  RSRLSIILQDPILFSGSIRFNLDPECKCTDDRLWEALEIAQL---KNMVKSLPGGLDAV- 149

Query: 133 YMDMSQYANRRSSDISGGEQQRVAICRAIANKPLIILADEPTGNLDLKTAQQVFSILKYL 192
                        + S G++Q   + RA   K  I++ DE T ++D+ T     +IL+ +
Sbjct: 150 -------VTEGGENFSVGQRQLFCLARAFVRKSSILIMDEATASIDMATE----NILQKV 198

Query: 193 VVRSGLAALIATHNHDLASQMDRQITI 219
           V+ +     + T  H +++ +D  + +
Sbjct: 199 VMTAFADRTVVTIAHRVSTILDADLVL 225


>gnl|CDD|146570 pfam04002, DUF2466, Protein of unknown function (DUF2466).  This
           family was named initially with reference to the E. coli
           radC102 mutation which suggested that RadC was involved
           in repair of DNA lesions. However the relevant mutation
           has subsequently been shown to be in recG, where radC is
           in fact an allele of recG. In addition, a personal
           communication from Claverys, J-P, et al, indicates a
           total failure of all attempts to characterize a
           radiation-related function for RadC in Streptococcus
           pneumoniae, suggesting that it is not involved in repair
           of DNA lesions, in recombination during transformation,
           in gene conversion, nor in mismatch repair.
          Length = 123

 Score = 27.9 bits (63), Expect = 2.4
 Identities = 15/37 (40%), Positives = 19/37 (51%), Gaps = 5/37 (13%)

Query: 188 ILKYLVVRSGLAALIATHNH---DLA-SQMDRQITIR 220
           I K   +R   AA+I  HNH   D   SQ D ++T R
Sbjct: 56  IFKR-ALRLNAAAVILAHNHPSGDPTPSQADIELTKR 91


>gnl|CDD|31609 COG1419, FlhF, Flagellar GTP-binding protein [Cell motility and
           secretion].
          Length = 407

 Score = 27.6 bits (61), Expect = 2.9
 Identities = 10/23 (43%), Positives = 17/23 (73%)

Query: 31  LSLKKGEIVALVSPSGTGKSTIL 53
           L +++  ++ALV P+G GK+T L
Sbjct: 198 LIVEQKRVIALVGPTGVGKTTTL 220


>gnl|CDD|173686 cd05595, STKc_PKB_beta, Catalytic domain of the Protein
           Serine/Threonine Kinase, Protein Kinase B beta.
           Serine/Threonine Kinases (STKs), Protein Kinase B (PKB)
           or Akt subfamily, beta (or Akt2) isoform, catalytic (c)
           domain. STKs catalyze the transfer of the
           gamma-phosphoryl group from ATP to serine/threonine
           residues on protein substrates. The PKB subfamily is
           part of a larger superfamily that includes the catalytic
           domains of other protein STKs, protein tyrosine kinases,
           RIO kinases, aminoglycoside phosphotransferase, choline
           kinase, and phosphoinositide 3-kinase. There are three
           PKB isoforms from different genes, PKB-alpha (or Akt1),
           PKB-beta (or Akt2), and PKB-gamma (or Akt3). PKB
           contains an N-terminal pleckstrin homology (PH) domain
           and a C-terminal catalytic domain. PKB-beta is the
           predominant PKB isoform expressed in insulin-responsive
           tissues. It plays a critical role in the regulation of
           glucose homeostasis. It is also implicated in muscle
           cell differentiation. Mice deficient in PKB-beta display
           normal growth weights but exhibit severe insulin
           resistance and diabetes, accompanied by lipoatrophy and
           B-cell failure.
          Length = 323

 Score = 27.7 bits (61), Expect = 2.9
 Identities = 14/50 (28%), Positives = 25/50 (50%), Gaps = 8/50 (16%)

Query: 85  LRCSKIGFVYQEHRLLMDFSVIENIIFPQ--------IIAGINHKTAYQR 126
           + C ++ F  Q+H  L +  ++E I FP+        ++AG+  K   QR
Sbjct: 188 MMCGRLPFYNQDHERLFELILMEEIRFPRTLSPEAKSLLAGLLKKDPKQR 237


>gnl|CDD|33504 COG3709, COG3709, Uncharacterized component of phosphonate
          metabolism [Inorganic ion transport and metabolism].
          Length = 192

 Score = 27.6 bits (61), Expect = 3.1
 Identities = 11/24 (45%), Positives = 15/24 (62%)

Query: 33 LKKGEIVALVSPSGTGKSTILHIA 56
             G ++A+V PSG GK T+L  A
Sbjct: 2  TFMGRLIAVVGPSGAGKDTLLDAA 25


>gnl|CDD|173684 cd05593, STKc_PKB_gamma, Catalytic domain of the Protein
           Serine/Threonine Kinase, Protein Kinase B gamma.
           Serine/Threonine Kinases (STKs), Protein Kinase B (PKB)
           or Akt subfamily, gamma (or Akt3) isoform, catalytic (c)
           domain. STKs catalyze the transfer of the
           gamma-phosphoryl group from ATP to serine/threonine
           residues on protein substrates. The PKB subfamily is
           part of a larger superfamily that includes the catalytic
           domains of other protein STKs, protein tyrosine kinases,
           RIO kinases, aminoglycoside phosphotransferase, choline
           kinase, and phosphoinositide 3-kinase. There are three
           PKB isoforms from different genes, PKB-alpha (or Akt1),
           PKB-beta (or Akt2), and PKB-gamma (or Akt3). PKB
           contains an N-terminal pleckstrin homology (PH) domain
           and a C-terminal catalytic domain. PKB-gamma is
           predominantly expressed in neuronal tissues. Mice
           deficient in PKB-gamma show a reduction in brain weight
           due to the decreases in cell size and cell number.
           PKB-gamma has also been shown to be upregulated in
           estrogen-deficient breast cancer cells,
           androgen-independent prostate cancer cells, and primary
           ovarian tumors. It acts as a key mediator in the genesis
           of ovarian cancer.
          Length = 328

 Score = 27.3 bits (60), Expect = 3.8
 Identities = 9/32 (28%), Positives = 20/32 (62%)

Query: 85  LRCSKIGFVYQEHRLLMDFSVIENIIFPQIIA 116
           + C ++ F  Q+H  L +  ++E+I FP+ ++
Sbjct: 188 MMCGRLPFYNQDHEKLFELILMEDIKFPRTLS 219


>gnl|CDD|30598 COG0249, MutS, Mismatch repair ATPase (MutS family) [DNA
           replication, recombination, and repair].
          Length = 843

 Score = 27.2 bits (60), Expect = 4.1
 Identities = 20/73 (27%), Positives = 34/73 (46%), Gaps = 8/73 (10%)

Query: 157 ICRAIANKPLIILADE---PTGNLD-LKTAQQVFSILKYLVVRSGLAALIATHNHDLASQ 212
           I      + L+IL DE    T   D L  A    ++L+YL  + G   L ATH H+L   
Sbjct: 680 ILDNATERSLVIL-DEIGRGTSTYDGLAIAW---AVLEYLHEKIGCRTLFATHYHELTEL 735

Query: 213 MDRQITIRDGMIA 225
            ++   +++  ++
Sbjct: 736 EEKLPQVKNYHMS 748


>gnl|CDD|35962 KOG0743, KOG0743, KOG0743, AAA+-type ATPase [Posttranslational
           modification, protein turnover, chaperones].
          Length = 457

 Score = 27.2 bits (60), Expect = 4.1
 Identities = 20/72 (27%), Positives = 30/72 (41%), Gaps = 17/72 (23%)

Query: 16  YRQVGKPFPVLENVHLSLKKGEIVALVSPSGTGKST-ILHIAGLLEVPDQGNVIIANQLC 74
           Y++VGK +          K+G +  L  P GTGKS+ I  +A  L      ++       
Sbjct: 227 YKRVGKAW----------KRGYL--LYGPPGTGKSSFIAAMANYLNY----DIYDLELTE 270

Query: 75  NKLSDDKKSFLR 86
            KL  D +  L 
Sbjct: 271 VKLDSDLRHLLL 282


>gnl|CDD|30001 cd01135, V_A-ATPase_B, V/A-type ATP synthase (non-catalytic)
           subunit B. These ATPases couple ATP hydrolysis to the
           build up of a H+ gradient, but V-type ATPases do not
           catalyze the reverse reaction. The Vacuolar (V-type)
           ATPase is found in the membranes of vacuoles, the golgi
           apparatus and in other coated vesicles in eukaryotes.
           Archaea have a protein which is similar in sequence to
           V-ATPases, but functions like an F-ATPase (called
           A-ATPase).  A similar protein is also found in a few
           bacteria. This subfamily consists of the non-catalytic
           beta subunit..
          Length = 276

 Score = 27.1 bits (60), Expect = 4.7
 Identities = 13/42 (30%), Positives = 21/42 (50%), Gaps = 1/42 (2%)

Query: 100 LMDFSVIENIIFPQIIAGINHKTAYQRAMDLLSYM-DMSQYA 140
           L +   IE II P++        AY++   +L  + DM+ YA
Sbjct: 138 LANDPTIERIITPRMALTTAEYLAYEKGKHVLVILTDMTNYA 179


>gnl|CDD|133313 cd04113, Rab4, Rab4 subfamily.  Rab4 has been implicated in
          numerous functions within the cell.  It helps regulate
          endocytosis through the sorting, recycling, and
          degradation of early endosomes. Mammalian Rab4 is
          involved in the regulation of many surface proteins
          including G-protein-coupled receptors, transferrin
          receptor, integrins, and surfactant protein A.
          Experimental data implicate Rab4 in regulation of the
          recycling of internalized receptors back to the plasma
          membrane.  It is also believed to influence
          receptor-mediated antigen processing in B-lymphocytes,
          in calcium-dependent exocytosis in platelets, in
          alpha-amylase secretion in pancreatic cells, and in
          insulin-induced translocation of Glut4 from internal
          vesicles to the cell surface. Rab4 is known to share
          effector proteins with Rab5 and Rab11.  GTPase
          activating proteins (GAPs) interact with GTP-bound Rab
          and accelerate the hydrolysis of GTP to GDP. Guanine
          nucleotide exchange factors (GEFs) interact with
          GDP-bound Rabs to promote the formation of the
          GTP-bound state.  Rabs are further regulated by guanine
          nucleotide dissociation inhibitors (GDIs), which
          facilitate Rab recycling by masking C-terminal lipid
          binding and promoting cytosolic localization.  Most Rab
          GTPases contain a lipid modification site at the
          C-terminus, with sequence motifs CC, CXC, or CCX. Lipid
          binding is essential for membrane attachment, a key
          feature of most Rab proteins.  Due to the presence of
          truncated sequences in this CD, the lipid modification
          site is not available for annotation.
          Length = 161

 Score = 26.8 bits (60), Expect = 5.1
 Identities = 8/14 (57%), Positives = 11/14 (78%)

Query: 41 LVSPSGTGKSTILH 54
          ++  SGTGKS +LH
Sbjct: 5  IIGSSGTGKSCLLH 18


>gnl|CDD|99707 cd00009, AAA, The AAA+ (ATPases Associated with a wide variety of
           cellular Activities) superfamily represents an ancient
           group of ATPases belonging to the ASCE (for additional
           strand, catalytic E) division of the P-loop NTPase fold.
           The ASCE division also includes ABC, RecA-like,
           VirD4-like, PilT-like, and SF1/2 helicases. Members of
           the AAA+ ATPases function as molecular chaperons, ATPase
           subunits of proteases, helicases, or nucleic-acid
           stimulated ATPases. The AAA+ proteins contain several
           distinct features in addition to the conserved
           alpha-beta-alpha core domain structure and the Walker A
           and B motifs of the P-loop NTPases..
          Length = 151

 Score = 26.7 bits (59), Expect = 5.3
 Identities = 20/78 (25%), Positives = 31/78 (39%), Gaps = 6/78 (7%)

Query: 31  LSLKKGEIVALVSPSGTGKSTILH-IAGLLEVPDQGNVII-ANQLCNKLSDDKKSFLRCS 88
           L L   + + L  P GTGK+T+   IA  L  P    + + A+ L   L   +       
Sbjct: 14  LELPPPKNLLLYGPPGTGKTTLARAIANELFRPGAPFLYLNASDLLEGLVVAELFGHFLV 73

Query: 89  KIGFVYQEHR----LLMD 102
           ++ F   E      L +D
Sbjct: 74  RLLFELAEKAKPGVLFID 91


>gnl|CDD|173685 cd05594, STKc_PKB_alpha, Catalytic domain of the Protein
           Serine/Threonine Kinase, Protein Kinase B alpha.
           Serine/Threonine Kinases (STKs), Protein Kinase B (PKB)
           or Akt subfamily, alpha (or Akt1) isoform, catalytic (c)
           domain. STKs catalyze the transfer of the
           gamma-phosphoryl group from ATP to serine/threonine
           residues on protein substrates. The PKB subfamily is
           part of a larger superfamily that includes the catalytic
           domains of other protein STKs, protein tyrosine kinases,
           RIO kinases, aminoglycoside phosphotransferase, choline
           kinase, and phosphoinositide 3-kinase. There are three
           PKB isoforms from different genes, PKB-alpha (or Akt1),
           PKB-beta (or Akt2), and PKB-gamma (or Akt3). PKB
           contains an N-terminal pleckstrin homology (PH) domain
           and a C-terminal catalytic domain. PKB-alpha is
           predominantly expressed in endothelial cells. It is
           critical for the regulation of angiogenesis and the
           maintenance of vascular integrity. It also plays a role
           in adipocyte differentiation. Mice deficient in
           PKB-alpha exhibit perinatal morbidity, growth
           retardation, reduction in body weight accompanied by
           reduced sizes of multiple organs, and enhanced apoptosis
           in some cell types. PKB-alpha activity has been reported
           to be frequently elevated in breast and prostate
           cancers. In some cancer cells, PKB-alpha may act as a
           suppressor of metastasis.
          Length = 325

 Score = 26.5 bits (58), Expect = 5.5
 Identities = 13/50 (26%), Positives = 25/50 (50%), Gaps = 8/50 (16%)

Query: 85  LRCSKIGFVYQEHRLLMDFSVIENIIFPQ--------IIAGINHKTAYQR 126
           + C ++ F  Q+H  L +  ++E I FP+        +++G+  K   QR
Sbjct: 189 MMCGRLPFYNQDHEKLFELILMEEIRFPRTLSPEAKSLLSGLLKKDPKQR 238


>gnl|CDD|73000 cd03241, ABC_RecN, RecN ATPase involved in DNA repair; ABC
          (ATP-binding cassette) transporter nucleotide-binding
          domain; ABC transporters are a large family of proteins
          involved in the transport of a wide variety of
          different compounds including sugars, ions, peptides,
          and more complex organic molecules.  The nucleotide
          binding domain shows the highest similarity between all
          members of the family.  ABC transporters are a subset
          of nucleotide hydrolases that contain a signature
          motif, Q-loop, and H-loop/switch region, in addition
          to, the Walker A motif/P-loop and Walker B motif
          commonly found in a number of ATP- and GTP-binding and
          hydrolyzing proteins..
          Length = 276

 Score = 26.7 bits (59), Expect = 5.5
 Identities = 14/39 (35%), Positives = 21/39 (53%), Gaps = 1/39 (2%)

Query: 21 KPFPVLENVHLSLKKGEIVALVSPSGTGKSTILHIAGLL 59
          K F ++E + L  ++G  V L   +G GKS +L    LL
Sbjct: 7  KNFALIEELELDFEEGLTV-LTGETGAGKSILLDALSLL 44


>gnl|CDD|73043 cd03284, ABC_MutS1, MutS1 homolog in eukaryotes.  The MutS protein
           initiates DNA mismatch repair by recognizing mispaired
           and unpaired bases embedded in duplex DNA and activating
           endo- and exonucleases to remove the mismatch.  Members
           of the MutS family possess C-terminal domain with a
           conserved ATPase activity that belongs to the ATP
           binding cassette (ABC) superfamily.  MutS homologs (MSH)
           have been identified in most prokaryotic and all
           eukaryotic organisms examined.  Prokaryotes have two
           homologs (MutS1 and MutS2), whereas seven MSH proteins
           (MSH1 to MSH7) have been identified in eukaryotes.  The
           homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6
           are primarily involved in mitotic mismatch repair,
           whereas MSH4-MSH5 is involved in resolution of Holliday
           junctions during meiosis.  All members of the MutS
           family contain the highly conserved Walker A/B ATPase
           domain, and many share a common mechanism of action.
           MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to
           form sliding clamps, and recognition of specific DNA
           structures or lesions results in ADP/ATP exchange..
          Length = 216

 Score = 26.7 bits (59), Expect = 5.7
 Identities = 23/79 (29%), Positives = 34/79 (43%), Gaps = 15/79 (18%)

Query: 144 SSDISGGE-------QQRVAICRAIANKPLIILADE---PTGNLD-LKTAQQVFSILKYL 192
           S D++GG         +   I      + L++L DE    T   D L  A    +I++YL
Sbjct: 83  SDDLAGGRSTFMVEMVETANILNNATERSLVLL-DEIGRGTSTYDGLSIAW---AIVEYL 138

Query: 193 VVRSGLAALIATHNHDLAS 211
             + G   L ATH H+L  
Sbjct: 139 HEKIGAKTLFATHYHELTE 157


>gnl|CDD|33731 COG3950, COG3950, Predicted ATP-binding protein involved in
          virulence [General function prediction only].
          Length = 440

 Score = 26.5 bits (58), Expect = 5.7
 Identities = 9/29 (31%), Positives = 18/29 (62%)

Query: 28 NVHLSLKKGEIVALVSPSGTGKSTILHIA 56
          N+ ++  + E   +V P+G+GK+T+L   
Sbjct: 16 NLDITFGESETTIIVGPNGSGKTTVLDAI 44


>gnl|CDD|146043 pfam03215, Rad17, Rad17 cell cycle checkpoint protein. 
          Length = 490

 Score = 26.5 bits (58), Expect = 5.9
 Identities = 13/30 (43%), Positives = 17/30 (56%)

Query: 26 LENVHLSLKKGEIVALVSPSGTGKSTILHI 55
          L+ V L   K  I+ L  PSG GKST + +
Sbjct: 35 LKAVFLESNKQLILLLTGPSGCGKSTTVKV 64


>gnl|CDD|163702 cd08071, MPN_DUF2466, Mov34/MPN/PAD-1 family.  Mov34 DUF2466 (also
           known as DNA repair protein RadC) domain of unknown
           function contains the signature JAB1/MPN/Mov34
           metalloenzyme (JAMM) motif, EXnHS/THX7SXXD, which is
           involved in zinc ion coordination and provides the
           active site for isopeptidase activity. However, to date,
           the name RadC has been misleading and no function has
           been determined.
          Length = 113

 Score = 26.6 bits (60), Expect = 6.1
 Identities = 14/37 (37%), Positives = 19/37 (51%), Gaps = 5/37 (13%)

Query: 188 ILKYLVVRSGLAALIATHNH---DLA-SQMDRQITIR 220
           I K   +R   AA+I  HNH   D   S+ D ++T R
Sbjct: 51  IFKE-ALRHNAAAIILAHNHPSGDPTPSREDIELTKR 86


>gnl|CDD|30765 COG0416, PlsX, Fatty acid/phospholipid biosynthesis enzyme [Lipid
           metabolism].
          Length = 338

 Score = 26.7 bits (59), Expect = 6.3
 Identities = 17/56 (30%), Positives = 30/56 (53%), Gaps = 8/56 (14%)

Query: 167 IILADEPTGNLDLKT----AQQVFSILKYLV---VRSGLAALIATHNHD-LASQMD 214
           +++ D  TGN+ LKT    A+ + S+LK  +   ++S L AL+       L  ++D
Sbjct: 225 VVVTDGFTGNVVLKTAEGTAKFILSLLKEEIKSSLKSKLGALLLKPALKRLKKKLD 280


>gnl|CDD|38732 KOG3523, KOG3523, KOG3523, Putative guanine nucleotide exchange
           factor TIM [Signal transduction mechanisms].
          Length = 695

 Score = 26.1 bits (57), Expect = 7.2
 Identities = 12/46 (26%), Positives = 24/46 (52%), Gaps = 1/46 (2%)

Query: 1   MDSAEVLLLQNVKHSYRQVGKPFPVLENVHLSLKKGEIVALVSPSG 46
           M+  E L+  + +  +++V K FP++      +K+GE+  LV    
Sbjct: 445 MERTEELIRISRQLEFKKV-KAFPLVSQSRWLVKRGELTQLVERRA 489


>gnl|CDD|30814 COG0466, Lon, ATP-dependent Lon protease, bacterial type
           [Posttranslational modification, protein turnover,
           chaperones].
          Length = 782

 Score = 26.3 bits (58), Expect = 7.2
 Identities = 9/19 (47%), Positives = 13/19 (68%)

Query: 34  KKGEIVALVSPSGTGKSTI 52
            KG I+ LV P G GK+++
Sbjct: 348 LKGPILCLVGPPGVGKTSL 366


>gnl|CDD|133282 cd01882, BMS1, Bms1.  Bms1 is an essential, evolutionarily
          conserved, nucleolar protein.  Its depletion interferes
          with processing of the 35S pre-rRNA at sites A0, A1,
          and A2, and the formation of 40S subunits.  Bms1, the
          putative endonuclease Rc11, and the essential U3 small
          nucleolar RNA form a stable subcomplex that is believed
          to control an early step in the formation of the 40S
          subumit.  The C-terminal domain of Bms1 contains a
          GTPase-activating protein (GAP) that functions
          intramolecularly.  It is believed that Rc11 activates
          Bms1 by acting as a guanine-nucleotide exchange factor
          (GEF) to promote GDP/GTP exchange, and that activated
          (GTP-bound) Bms1 delivers Rc11 to the preribosomes.
          Length = 225

 Score = 26.1 bits (58), Expect = 7.4
 Identities = 8/16 (50%), Positives = 13/16 (81%)

Query: 38 IVALVSPSGTGKSTIL 53
          +VA+V P G GK+T++
Sbjct: 41 VVAVVGPPGVGKTTLI 56


>gnl|CDD|34613 COG5008, PilU, Tfp pilus assembly protein, ATPase PilU [Cell
           motility and secretion / Intracellular trafficking and
           secretion].
          Length = 375

 Score = 26.1 bits (57), Expect = 7.6
 Identities = 12/30 (40%), Positives = 20/30 (66%), Gaps = 2/30 (6%)

Query: 24  PVLENVHLSLKKGEIVALVSPSGTGKSTIL 53
            VL++  L+L K  +V +V  +G+GKST +
Sbjct: 117 EVLKD--LALAKRGLVIIVGATGSGKSTTM 144


>gnl|CDD|35964 KOG0745, KOG0745, KOG0745, Putative ATP-dependent Clp-type protease
           (AAA+ ATPase superfamily) [Posttranslational
           modification, protein turnover, chaperones].
          Length = 564

 Score = 26.1 bits (57), Expect = 7.9
 Identities = 14/54 (25%), Positives = 30/54 (55%), Gaps = 3/54 (5%)

Query: 10  QNVKHSYRQVGKPFPVLENVHLSLKKGEIVALVSPSGTGKSTILH-IAGLLEVP 62
               ++ RQ+ K     +   + L+K  ++ L+ P+G+GK+ +   +A +L+VP
Sbjct: 202 AQWPNNQRQIAKALDEDDE-DVELEKSNVL-LLGPTGSGKTLLAQTLARVLDVP 253


>gnl|CDD|144199 pfam00519, PPV_E1_C, Papillomavirus helicase.  This protein is a
           DNA helicase that is required for initiation of viral
           DNA replication. This protein forms a complex with the
           E2 protein pfam00508.
          Length = 432

 Score = 25.9 bits (58), Expect = 8.3
 Identities = 9/32 (28%), Positives = 15/32 (46%), Gaps = 2/32 (6%)

Query: 124 YQRAMDLLSYMDMSQYANRRSSDISGGEQQRV 155
           Y+RA   +  M MSQ+  +R   + G    + 
Sbjct: 204 YKRAE--MREMSMSQWIKKRCDKVEGEGDWKP 233


>gnl|CDD|31392 COG1199, DinG, Rad3-related DNA helicases [Transcription / DNA
          replication, recombination, and repair].
          Length = 654

 Score = 25.9 bits (56), Expect = 9.1
 Identities = 10/22 (45%), Positives = 16/22 (72%)

Query: 29 VHLSLKKGEIVALVSPSGTGKS 50
          V  +LK GE + + +P+GTGK+
Sbjct: 27 VAEALKGGEGLLIEAPTGTGKT 48


>gnl|CDD|29986 cd01120, RecA-like_NTPases, RecA-like NTPases. This family
          includes the NTP binding domain of F1 and V1 H+ATPases,
          DnaB and related helicases as well as bacterial RecA
          and related eukaryotic and archaeal recombinases. This
          group also includes bacterial conjugation proteins and
          related DNA transfer proteins involved in type II and
          type IV secretion..
          Length = 165

 Score = 25.8 bits (56), Expect = 9.1
 Identities = 8/33 (24%), Positives = 16/33 (48%)

Query: 38 IVALVSPSGTGKSTILHIAGLLEVPDQGNVIIA 70
          ++ +  P+G+GK+T+     L      G V+  
Sbjct: 1  LILVFGPTGSGKTTLALQLALNIATKGGKVVYV 33


>gnl|CDD|32560 COG2433, COG2433, Uncharacterized conserved protein [Function
           unknown].
          Length = 652

 Score = 26.0 bits (57), Expect = 9.3
 Identities = 16/82 (19%), Positives = 34/82 (41%), Gaps = 16/82 (19%)

Query: 2   DSAEVLLLQNVKHSYRQVGKPFPVLENVHLS----------LKKGEIVALVSPSGTGKST 51
             AE+  ++ ++ S +  G P  V+E + L           +K+G+++ +  PSG G  T
Sbjct: 503 KLAELRKMRKLELSGK--GTPVKVVEKLTLEAIEEAEEEYGIKEGDVILVEDPSGGGART 560

Query: 52  ILHIAGLLEVPDQGNVIIANQL 73
              +           +I   ++
Sbjct: 561 AEELIDK----KPRAIIRGEEM 578


>gnl|CDD|32059 COG1875, COG1875, Predicted ATPase related to phosphate
           starvation-inducible protein PhoH [Signal transduction
           mechanisms].
          Length = 436

 Score = 26.0 bits (57), Expect = 9.7
 Identities = 10/28 (35%), Positives = 18/28 (64%)

Query: 38  IVALVSPSGTGKSTILHIAGLLEVPDQG 65
           +V+L   +GTGK+ +   AGL +V ++ 
Sbjct: 247 LVSLGGKAGTGKTLLALAAGLEQVLERK 274


  Database: CddA
    Posted date:  Feb 4, 2011  9:38 PM
  Number of letters in database: 6,263,737
  Number of sequences in database:  21,609
  
Lambda     K      H
   0.321    0.136    0.380 

Gapped
Lambda     K      H
   0.267   0.0825    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21609
Number of Hits to DB: 2,577,240
Number of extensions: 131145
Number of successful extensions: 914
Number of sequences better than 10.0: 1
Number of HSP's gapped: 747
Number of HSP's successfully gapped: 259
Length of query: 227
Length of database: 6,263,737
Length adjustment: 90
Effective length of query: 137
Effective length of database: 4,318,927
Effective search space: 591692999
Effective search space used: 591692999
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 56 (25.2 bits)