RPS-BLAST 2.2.22 [Sep-27-2009]
Database: CddB
21,608 sequences; 5,994,473 total letters
Searching..................................................done
Query= gi|254780871|ref|YP_003065284.1| lipoprotein-releasing system
ATP-binding protein lolD [Candidatus Liberibacter asiaticus str.
psy62]
(227 letters)
>gnl|CDD|131266 TIGR02211, LolD_lipo_ex, lipoprotein releasing system, ATP-binding
protein. This model represents LolD, a member of the
ABC transporter family (pfam00005). LolD is involved in
localization of lipoproteins in some bacteria. It works
with a transmembrane protein LolC, which in some species
is a paralogous pair LolC and LolE. Depending on whether
the residue immediately following the new, modified
N-terminal Cys residue, the nascent lipoprotein may be
carried further by LolA and LolB to the outer membrane,
or remain at the inner membrane. The top scoring
proteins excluded by this model include homologs from
the archaeal genus Methanosarcina.
Length = 221
Score = 214 bits (547), Expect = 1e-56
Identities = 91/221 (41%), Positives = 143/221 (64%)
Query: 6 VLLLQNVKHSYRQVGKPFPVLENVHLSLKKGEIVALVSPSGTGKSTILHIAGLLEVPDQG 65
+L +N+ Y++ VL+ V LS+ KGEIVA+V SG+GKST+LH+ G L+ P G
Sbjct: 1 LLKCENLGKRYQEGKLDTRVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDNPTSG 60
Query: 66 NVIIANQLCNKLSDDKKSFLRCSKIGFVYQEHRLLMDFSVIENIIFPQIIAGINHKTAYQ 125
V+ Q +KLS ++++ LR K+GF+YQ H LL DF+ +EN+ P +I + K A +
Sbjct: 61 EVLFNGQSLSKLSSNERAKLRNKKLGFIYQFHHLLPDFTALENVAMPLLIGKKSVKEAKE 120
Query: 126 RAMDLLSYMDMSQYANRRSSDISGGEQQRVAICRAIANKPLIILADEPTGNLDLKTAQQV 185
RA ++L + + N R S++SGGE+QRVAI RA+ N+P ++LADEPTGNLD A+ +
Sbjct: 121 RAYEMLEKVGLEHRINHRPSELSGGERQRVAIARALVNQPSLVLADEPTGNLDNNNAKII 180
Query: 186 FSILKYLVVRSGLAALIATHNHDLASQMDRQITIRDGMIAD 226
F ++ L + L+ TH+ +LA ++DR + ++DG + +
Sbjct: 181 FDLMLELNRELNTSFLVVTHDLELAKKLDRVLEMKDGQLFN 221
>gnl|CDD|183244 PRK11629, lolD, lipoprotein transporter ATP-binding subunit;
Provisional.
Length = 233
Score = 204 bits (521), Expect = 1e-53
Identities = 91/202 (45%), Positives = 130/202 (64%)
Query: 25 VLENVHLSLKKGEIVALVSPSGTGKSTILHIAGLLEVPDQGNVIIANQLCNKLSDDKKSF 84
VL NV S+ +GE++A+V SG+GKST+LH+ G L+ P G+VI Q +KLS K+
Sbjct: 24 VLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTPTSGDVIFNGQPMSKLSSAAKAE 83
Query: 85 LRCSKIGFVYQEHRLLMDFSVIENIIFPQIIAGINHKTAYQRAMDLLSYMDMSQYANRRS 144
LR K+GF+YQ H LL DF+ +EN+ P +I RA+++L+ + + AN R
Sbjct: 84 LRNQKLGFIYQFHHLLPDFTALENVAMPLLIGKKKPAEINSRALEMLAAVGLEHRANHRP 143
Query: 145 SDISGGEQQRVAICRAIANKPLIILADEPTGNLDLKTAQQVFSILKYLVVRSGLAALIAT 204
S++SGGE+QRVAI RA+ N P ++LADEPTGNLD + A +F +L L G A L+ T
Sbjct: 144 SELSGGERQRVAIARALVNNPRLVLADEPTGNLDARNADSIFQLLGELNRLQGTAFLVVT 203
Query: 205 HNHDLASQMDRQITIRDGMIAD 226
H+ LA +M RQ+ +RDG +
Sbjct: 204 HDLQLAKRMSRQLEMRDGRLTA 225
>gnl|CDD|131721 TIGR02673, FtsE, cell division ATP-binding protein FtsE. This
model describes FtsE, a member of the ABC transporter
ATP-binding protein family. This protein, and its
permease partner FtsX, localize to the division site. In
a number of species, the ftsEX gene pair is located next
to FtsY, the signal recognition particle-docking
protein.
Length = 214
Score = 171 bits (436), Expect = 1e-43
Identities = 79/216 (36%), Positives = 117/216 (54%), Gaps = 6/216 (2%)
Query: 9 LQNVKHSYRQVGKPFPVLENVHLSLKKGEIVALVSPSGTGKSTILHIAGLLEVPDQGNVI 68
NV +Y L +V L ++KGE + L PSG GK+T+L + P +G V
Sbjct: 4 FHNVSKAY---PGGVAALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTPSRGQVR 60
Query: 69 IANQLCNKLSDDKKSFLRCSKIGFVYQEHRLLMDFSVIENIIFPQIIAGINHKTAYQRAM 128
IA + N+L + LR +IG V+Q+ RLL D +V EN+ P + G + +R
Sbjct: 61 IAGEDVNRLRGRQLPLLR-RRIGVVFQDFRLLPDRTVYENVALPLEVRGKKEREIQRRVG 119
Query: 129 DLLSYMDMSQYANRRSSDISGGEQQRVAICRAIANKPLIILADEPTGNLDLKTAQQVFSI 188
L + + A+ +SGGEQQRVAI RAI N P ++LADEPTGNLD ++++ +
Sbjct: 120 AALRQVGLEHKADAFPEQLSGGEQQRVAIARAIVNSPPLLLADEPTGNLDPDLSERILDL 179
Query: 189 LKYLVVRSGLAALIATHNHDLASQMD-RQITIRDGM 223
LK L + G ++ATH+ L ++ R I + DG
Sbjct: 180 LKRL-NKRGTTVIVATHDLSLVDRVAHRVIILDDGR 214
>gnl|CDD|130034 TIGR00960, 3a0501s02, Type II (General) Secretory Pathway (IISP)
Family protein.
Length = 216
Score = 169 bits (431), Expect = 4e-43
Identities = 81/213 (38%), Positives = 120/213 (56%), Gaps = 8/213 (3%)
Query: 16 YRQVGKPFP-----VLENVHLSLKKGEIVALVSPSGTGKSTILHIAGLLEVPDQGNVIIA 70
+ QV K +P L+N++ + KGE+V LV SG GKST L + +E P +G +
Sbjct: 4 FEQVSKAYPGGHQPALDNLNFHITKGEMVFLVGHSGAGKSTFLKLILGIEKPTRGKIRFN 63
Query: 71 NQLCNKLSDDKKSFLRCSKIGFVYQEHRLLMDFSVIENIIFPQIIAGINHKTAYQRAMDL 130
Q +L + FLR IG V+Q+HRLL D +V +N+ FP I G+ + A +R
Sbjct: 64 GQDLTRLRGREIPFLR-RHIGMVFQDHRLLSDRTVYDNVAFPLRIIGVPPRDANERVSAA 122
Query: 131 LSYMDMSQYANRRSSDISGGEQQRVAICRAIANKPLIILADEPTGNLDLKTAQQVFSILK 190
L + + A+ +SGGEQQRVAI RAI +KP ++LADEPTGNLD + ++ + + +
Sbjct: 123 LEKVGLEGKAHALPMQLSGGEQQRVAIARAIVHKPPLLLADEPTGNLDPELSRDIMRLFE 182
Query: 191 YLVVRSGLAALIATHNHDLASQM-DRQITIRDG 222
R G L+ATH+ +L R +T+ G
Sbjct: 183 E-FNRRGTTVLVATHDINLVETYRHRTLTLSRG 214
>gnl|CDD|182528 PRK10535, PRK10535, macrolide transporter ATP-binding /permease
protein; Provisional.
Length = 648
Score = 162 bits (412), Expect = 7e-41
Identities = 83/221 (37%), Positives = 127/221 (57%), Gaps = 1/221 (0%)
Query: 4 AEVLLLQNVKHSYRQVGKPFPVLENVHLSLKKGEIVALVSPSGTGKSTILHIAGLLEVPD 63
+L L++++ SY + VL+ + L + GE+VA+V SG+GKST+++I G L+ P
Sbjct: 2 TALLELKDIRRSYPSGEEQVEVLKGISLDIYAGEMVAIVGASGSGKSTLMNILGCLDKPT 61
Query: 64 QGNVIIANQLCNKLSDDKKSFLRCSKIGFVYQEHRLLMDFSVIENIIFPQIIAGINHKTA 123
G +A Q L D + LR GF++Q + LL + +N+ P + AG+ K
Sbjct: 62 SGTYRVAGQDVATLDADALAQLRREHFGFIFQRYHLLSHLTAAQNVEVPAVYAGLERKQR 121
Query: 124 YQRAMDLLSYMDMSQYANRRSSDISGGEQQRVAICRAIANKPLIILADEPTGNLDLKTAQ 183
RA +LL + + + S +SGG+QQRV+I RA+ N +ILADEPTG LD + +
Sbjct: 122 LLRAQELLQRLGLEDRVEYQPSQLSGGQQQRVSIARALMNGGQVILADEPTGALDSHSGE 181
Query: 184 QVFSILKYLVVRSGLAALIATHNHDLASQMDRQITIRDGMI 224
+V +IL L R G +I TH+ +A+Q +R I IRDG I
Sbjct: 182 EVMAILHQLRDR-GHTVIIVTHDPQVAAQAERVIEIRDGEI 221
>gnl|CDD|163352 TIGR03608, L_ocin_972_ABC, putative bacteriocin export ABC
transporter, lactococcin 972 group. A gene pair with a
fairly wide distribution consists of a polypeptide
related to the lactococcin 972 (see TIGR01653) and
multiple-membrane-spanning putative immunity protein
(see TIGR01654). This model represents a small clade
within the ABC transporters that regularly are found
adjacent to these bacteriocin system gene pairs and are
likely serve as export proteins.
Length = 206
Score = 158 bits (403), Expect = 9e-40
Identities = 69/195 (35%), Positives = 117/195 (60%), Gaps = 1/195 (0%)
Query: 25 VLENVHLSLKKGEIVALVSPSGTGKSTILHIAGLLEVPDQGNVIIANQLCNKLSDDKKSF 84
+L++++L+++KG++ A++ SG+GKST+L+I GLLE D G V + + L+ K S
Sbjct: 13 ILDDLNLTIEKGKMYAIIGESGSGKSTLLNIIGLLEKFDSGQVYLNGKETPPLNSKKASK 72
Query: 85 LRCSKIGFVYQEHRLLMDFSVIENIIFPQIIAGINHKTAYQRAMDLLSYMDMSQYANRRS 144
R K+G+++Q L+ + +V EN+ ++ K ++ + L + ++ ++
Sbjct: 73 FRREKLGYLFQNFALIENETVEENLDLGLKYKKLSKKEKREKKKEALEKVGLNLKLKQKI 132
Query: 145 SDISGGEQQRVAICRAIANKPLIILADEPTGNLDLKTAQQVFSILKYLVVRSGLAALIAT 204
++SGGEQQRVA+ RAI P +ILADEPTG+LD K +V +L L G +I T
Sbjct: 133 YELSGGEQQRVALARAILKDPPLILADEPTGSLDPKNRDEVLDLLLEL-NDEGKTIIIVT 191
Query: 205 HNHDLASQMDRQITI 219
H+ ++A Q DR I +
Sbjct: 192 HDPEVAKQADRVIEL 206
>gnl|CDD|131368 TIGR02315, ABC_phnC, phosphonate ABC transporter, ATP-binding
protein. Phosphonates are a class of
phosphorus-containing organic compound with a stable
direct C-P bond rather than a C-O-P linkage. A number of
bacterial species have operons, typically about 14 genes
in size, with genes for ATP-dependent transport of
phosphonates, degradation, and regulation of the
expression of the system. Members of this protein family
are the ATP-binding cassette component of tripartite ABC
transporters of phosphonates.
Length = 243
Score = 149 bits (379), Expect = 5e-37
Identities = 77/221 (34%), Positives = 126/221 (57%), Gaps = 16/221 (7%)
Query: 18 QVGKPFP----VLENVHLSLKKGEIVALVSPSGTGKSTIL-HIAGLLEVPDQGNVIIANQ 72
+ K +P L+N++L++ GE VA++ PSG GKST+L I L+E P G++++
Sbjct: 6 NLSKVYPNGKQALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVE-PSSGSILLEGT 64
Query: 73 LCNKLSDDKKSFLRCSKIGFVYQEHRLLMDFSVIENII--------FPQIIAGINHKTAY 124
KL K LR +IG ++Q + L+ +V+EN++ + + G +
Sbjct: 65 DITKLRGKKLRKLR-RRIGMIFQHYNLIERLTVLENVLHGRLGYKPTWRSLLGRFSEEDK 123
Query: 125 QRAMDLLSYMDMSQYANRRSSDISGGEQQRVAICRAIANKPLIILADEPTGNLDLKTAQQ 184
+RA+ L + ++ A +R+ +SGG+QQRVAI RA+A +P +ILADEP +LD KT++Q
Sbjct: 124 ERALSALERVGLADKAYQRADQLSGGQQQRVAIARALAQQPDLILADEPIASLDPKTSKQ 183
Query: 185 VFSILKYLVVRSGLAALIATHNHDLASQ-MDRQITIRDGMI 224
V LK + G+ +I H DLA + DR + ++ G I
Sbjct: 184 VMDYLKRINKEDGITVIINLHQVDLAKKYADRIVGLKAGEI 224
>gnl|CDD|182569 PRK10584, PRK10584, putative ABC transporter ATP-binding protein
YbbA; Provisional.
Length = 228
Score = 135 bits (341), Expect = 1e-32
Identities = 70/222 (31%), Positives = 126/222 (56%)
Query: 1 MDSAEVLLLQNVKHSYRQVGKPFPVLENVHLSLKKGEIVALVSPSGTGKSTILHIAGLLE 60
M + ++ + ++K S Q +L V L +K+GE +AL+ SG+GKST+L I L+
Sbjct: 1 MPAENIVEVHHLKKSVGQGEHELSILTGVELVVKRGETIALIGESGSGKSTLLAILAGLD 60
Query: 61 VPDQGNVIIANQLCNKLSDDKKSFLRCSKIGFVYQEHRLLMDFSVIENIIFPQIIAGINH 120
G V + Q +++ ++ ++ LR +GFV+Q L+ + +EN+ P ++ G +
Sbjct: 61 DGSSGEVSLVGQPLHQMDEEARAKLRAKHVGFVFQSFMLIPTLNALENVELPALLRGESS 120
Query: 121 KTAYQRAMDLLSYMDMSQYANRRSSDISGGEQQRVAICRAIANKPLIILADEPTGNLDLK 180
+ + A LL + + + + + +SGGEQQRVA+ RA +P ++ ADEPTGNLD +
Sbjct: 121 RQSRNGAKALLEQLGLGKRLDHLPAQLSGGEQQRVALARAFNGRPDVLFADEPTGNLDRQ 180
Query: 181 TAQQVFSILKYLVVRSGLAALIATHNHDLASQMDRQITIRDG 222
T ++ +L L G ++ TH+ LA++ DR++ + +G
Sbjct: 181 TGDKIADLLFSLNREHGTTLILVTHDLQLAARCDRRLRLVNG 222
>gnl|CDD|182980 PRK11124, artP, arginine transporter ATP-binding subunit;
Provisional.
Length = 242
Score = 134 bits (340), Expect = 1e-32
Identities = 68/190 (35%), Positives = 106/190 (55%), Gaps = 6/190 (3%)
Query: 25 VLENVHLSLKKGEIVALVSPSGTGKSTILHIAGLLEVPDQGNVIIANQ---LCNKLSDDK 81
L ++ L +GE + L+ PSG GKS++L + LLE+P G + IA SD
Sbjct: 17 ALFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTPSDKA 76
Query: 82 KSFLRCSKIGFVYQEHRLLMDFSVIENII-FPQIIAGINHKTAYQRAMDLLSYMDMSQYA 140
LR +G V+Q++ L +V +N+I P + G++ A RA LL + + YA
Sbjct: 77 IRELR-RNVGMVFQQYNLWPHLTVQQNLIEAPCRVLGLSKDQALARAEKLLERLRLKPYA 135
Query: 141 NRRSSDISGGEQQRVAICRAIANKPLIILADEPTGNLDLKTAQQVFSILKYLVVRSGLAA 200
+R +SGG+QQRVAI RA+ +P ++L DEPT LD + Q+ SI++ L +G+
Sbjct: 136 DRFPLHLSGGQQQRVAIARALMMEPQVLLFDEPTAALDPEITAQIVSIIREL-AETGITQ 194
Query: 201 LIATHNHDLA 210
+I TH ++A
Sbjct: 195 VIVTHEVEVA 204
>gnl|CDD|132027 TIGR02982, heterocyst_DevA, ABC exporter ATP-binding subunit, DevA
family. Members of this protein family are found mostly
in the Cyanobacteria, but also in the Planctomycetes.
Cyanobacterial examples are involved in heterocyst
formation, by which some fraction of members of the
colony undergo a developmental change and become capable
of nitrogen fixation. The DevBCA proteins are thought
export of either heterocyst-specific glycolipids or an
enzyme essential for formation of the laminated layer
found in heterocysts.
Length = 220
Score = 133 bits (338), Expect = 2e-32
Identities = 68/221 (30%), Positives = 124/221 (56%), Gaps = 2/221 (0%)
Query: 6 VLLLQNVKHSYRQVGKPFPVLENVHLSLKKGEIVALVSPSGTGKSTILHIAGLLEVPDQG 65
V+ ++N+ H Y VL +++L + GEIV L PSG+GK+T+L + G L +G
Sbjct: 1 VISIRNLNHYYGHGSLRKQVLFDINLEINPGEIVILTGPSGSGKTTLLTLIGGLRSVQEG 60
Query: 66 NVIIANQLCNKLSDDKKSFLRCSKIGFVYQEHRLLMDFSVIENIIFP-QIIAGINHKTAY 124
++ + Q S+ + LR IG+++Q H LL + +N+ ++ ++++ A
Sbjct: 61 SLKVLGQELYGASEKELVQLR-RNIGYIFQAHNLLGFLTARQNVQMALELQPNLSYQEAR 119
Query: 125 QRAMDLLSYMDMSQYANRRSSDISGGEQQRVAICRAIANKPLIILADEPTGNLDLKTAQQ 184
+RA +L + + + + ++SGG++QRVAI RA+ ++P ++LADEPT LD K+ +
Sbjct: 120 ERARAMLEAVGLGDHLDYYPHNLSGGQKQRVAIARALVHRPKLVLADEPTAALDSKSGRD 179
Query: 185 VFSILKYLVVRSGLAALIATHNHDLASQMDRQITIRDGMIA 225
V +++ L G LI TH++ + DR + + DG +
Sbjct: 180 VVELMQKLAREQGCTILIVTHDNRILDVADRIVHMEDGKLL 220
>gnl|CDD|183001 PRK11153, metN, DL-methionine transporter ATP-binding subunit;
Provisional.
Length = 343
Score = 132 bits (334), Expect = 9e-32
Identities = 71/211 (33%), Positives = 112/211 (53%), Gaps = 9/211 (4%)
Query: 9 LQNVKHSYRQVGKPFPVLENVHLSLKKGEIVALVSPSGTGKSTILHIAGLLEVPDQGNVI 68
L+N+ + Q G+ L NV L + GEI ++ SG GKST++ LLE P G V+
Sbjct: 4 LKNISKVFPQGGRTIHALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLERPTSGRVL 63
Query: 69 IANQLCNKLSDDKKSFLRCSKIGFVYQEHRLLMDFSVIENIIFPQIIAGINHKTAYQRAM 128
+ Q LS+ + R +IG ++Q LL +V +N+ P +AG R
Sbjct: 64 VDGQDLTALSEKELRKAR-RQIGMIFQHFNLLSSRTVFDNVALPLELAGTPKAEIKARVT 122
Query: 129 DLLSYMDMSQYANRRSSDISGGEQQRVAICRAIANKPLIILADEPTGNLDLKTAQQVFSI 188
+LL + +S A+R + +SGG++QRVAI RA+A+ P ++L DE T LD T + + +
Sbjct: 123 ELLELVGLSDKADRYPAQLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTRSILEL 182
Query: 189 LKYLVVRSGLAALIATHNHDLASQMD--RQI 217
LK + GL ++ TH +MD ++I
Sbjct: 183 LKDINRELGLTIVLITH------EMDVVKRI 207
>gnl|CDD|182829 PRK10908, PRK10908, cell division protein FtsE; Provisional.
Length = 222
Score = 128 bits (323), Expect = 1e-30
Identities = 75/212 (35%), Positives = 115/212 (54%), Gaps = 7/212 (3%)
Query: 16 YRQVGKPF----PVLENVHLSLKKGEIVALVSPSGTGKSTILHIAGLLEVPDQGNVIIAN 71
+ V K + L+ V ++ GE+ L SG GKST+L + +E P G + +
Sbjct: 4 FEHVSKAYLGGRQALQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIERPSAGKIWFSG 63
Query: 72 QLCNKLSDDKKSFLRCSKIGFVYQEHRLLMDFSVIENIIFPQIIAGINHKTAYQRAMDLL 131
+L + + FLR +IG ++Q+H LLMD +V +N+ P IIAG + +R L
Sbjct: 64 HDITRLKNREVPFLR-RQIGMIFQDHHLLMDRTVYDNVAIPLIIAGASGDDIRRRVSAAL 122
Query: 132 SYMDMSQYANRRSSDISGGEQQRVAICRAIANKPLIILADEPTGNLDLKTAQQVFSILKY 191
+ + A +SGGEQQRV I RA+ NKP ++LADEPTGNLD ++ + + +
Sbjct: 123 DKVGLLDKAKNFPIQLSGGEQQRVGIARAVVNKPAVLLADEPTGNLDDALSEGILRLFEE 182
Query: 192 LVVRSGLAALIATHNHDLASQMD-RQITIRDG 222
R G+ L+ATH+ L S+ R +T+ DG
Sbjct: 183 F-NRVGVTVLMATHDIGLISRRSYRMLTLSDG 213
>gnl|CDD|181868 PRK09452, potA, putrescine/spermidine ABC transporter ATPase
protein; Reviewed.
Length = 375
Score = 125 bits (317), Expect = 7e-30
Identities = 72/222 (32%), Positives = 118/222 (53%), Gaps = 13/222 (5%)
Query: 6 VLLLQNVKHSYRQVGKPFPVLENVHLSLKKGEIVALVSPSGTGKSTILH-IAGLLEVPDQ 64
++ L+ + S+ GK V+ N+ L++ GE + L+ PSG GK+T+L IAG E PD
Sbjct: 14 LVELRGISKSFD--GKE--VISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGF-ETPDS 68
Query: 65 GNVIIANQLCNKLSDDKKSFLRCSKIGFVYQEHRLLMDFSVIENIIFPQIIAGINHKTAY 124
G +++ Q + + + + V+Q + L +V EN+ F +
Sbjct: 69 GRIMLDGQDITHVPAENR------HVNTVFQSYALFPHMTVFENVAFGLRMQKTPAAEIT 122
Query: 125 QRAMDLLSYMDMSQYANRRSSDISGGEQQRVAICRAIANKPLIILADEPTGNLDLKTAQQ 184
R M+ L + + ++A R+ +SGG+QQRVAI RA+ NKP ++L DE LD K +Q
Sbjct: 123 PRVMEALRMVQLEEFAQRKPHQLSGGQQQRVAIARAVVNKPKVLLLDESLSALDYKLRKQ 182
Query: 185 VFSILKYLVVRSGLAALIATHNHDLASQM-DRQITIRDGMIA 225
+ + LK L + G+ + TH+ + A M DR + +RDG I
Sbjct: 183 MQNELKALQRKLGITFVFVTHDQEEALTMSDRIVVMRDGRIE 224
>gnl|CDD|181906 PRK09493, glnQ, glutamine ABC transporter ATP-binding protein;
Reviewed.
Length = 240
Score = 125 bits (315), Expect = 1e-29
Identities = 73/215 (33%), Positives = 124/215 (57%), Gaps = 8/215 (3%)
Query: 16 YRQVGKPF---PVLENVHLSLKKGEIVALVSPSGTGKSTILHIAGLLEVPDQGNVIIANQ 72
++ V K F VL N+ L++ +GE+V ++ PSG+GKST+L LE G++I+
Sbjct: 4 FKNVSKHFGPTQVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEITSGDLIVDGL 63
Query: 73 LCNKLSDDKKSFLRCSKIGFVYQEHRLLMDFSVIENIIF-PQIIAGINHKTAYQRAMDLL 131
N D++ + + G V+Q+ L + +EN++F P + G + + A ++A +LL
Sbjct: 64 KVNDPKVDERLIRQ--EAGMVFQQFYLFPHLTALENVMFGPLRVRGASKEEAEKQARELL 121
Query: 132 SYMDMSQYANRRSSDISGGEQQRVAICRAIANKPLIILADEPTGNLDLKTAQQVFSILKY 191
+ + +++ A+ S++SGG+QQRVAI RA+A KP ++L DEPT LD + +V +++
Sbjct: 122 AKVGLAERAHHYPSELSGGQQQRVAIARALAVKPKLMLFDEPTSALDPELRHEVLKVMQD 181
Query: 192 LVVRSGLAALIATHNHDLASQM-DRQITIRDGMIA 225
L G+ +I TH A ++ R I I G IA
Sbjct: 182 L-AEEGMTMVIVTHEIGFAEKVASRLIFIDKGRIA 215
>gnl|CDD|131367 TIGR02314, ABC_MetN, D-methionine ABC transporter, ATP-binding
protein. Members of this family are the ATP-binding
protein of the D-methionine ABC transporter complex.
Known members belong to the Proteobacteria.
Length = 343
Score = 122 bits (308), Expect = 7e-29
Identities = 67/214 (31%), Positives = 110/214 (51%), Gaps = 1/214 (0%)
Query: 9 LQNVKHSYRQVGKPFPVLENVHLSLKKGEIVALVSPSGTGKSTILHIAGLLEVPDQGNVI 68
L N+ + Q K L NV L + G+I ++ SG GKST++ LLE P G+VI
Sbjct: 4 LSNITKVFHQGTKTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTSGSVI 63
Query: 69 IANQLCNKLSDDKKSFLRCSKIGFVYQEHRLLMDFSVIENIIFPQIIAGINHKTAYQRAM 128
+ Q LS+ + + R +IG ++Q LL +V N+ P + ++
Sbjct: 64 VDGQDLTTLSNSELTKAR-RQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEIKRKVT 122
Query: 129 DLLSYMDMSQYANRRSSDISGGEQQRVAICRAIANKPLIILADEPTGNLDLKTAQQVFSI 188
+LL+ + + + S++SGG++QRVAI RA+A+ P ++L DE T LD T Q + +
Sbjct: 123 ELLALVGLGDKHDSYPSNLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTQSILEL 182
Query: 189 LKYLVVRSGLAALIATHNHDLASQMDRQITIRDG 222
LK + R GL L+ TH D+ ++ + +
Sbjct: 183 LKEINRRLGLTILLITHEMDVVKRICDCVAVISN 216
>gnl|CDD|130041 TIGR00968, 3a0106s01, sulfate ABC transporter, ATP-binding protein.
Length = 237
Score = 121 bits (306), Expect = 1e-28
Identities = 67/213 (31%), Positives = 112/213 (52%), Gaps = 10/213 (4%)
Query: 7 LLLQNVKHSYRQVGKPFPVLENVHLSLKKGEIVALVSPSGTGKSTILHIAGLLEVPDQGN 66
+ + N+ + F L++V+L + G +VAL+ PSG+GKST+L I LE PD G
Sbjct: 1 IEIANISKRFGS----FQALDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQPDSGR 56
Query: 67 VIIANQLCNKLSDDKKSFLRCSKIGFVYQEHRLLMDFSVIENIIFPQIIAGINHKTAYQR 126
+ + Q ++ R KIGFV+Q + L +V +NI F I R
Sbjct: 57 IRLNGQDATRVH------ARDRKIGFVFQHYALFKHLTVRDNIAFGLEIRKHPKAKIKAR 110
Query: 127 AMDLLSYMDMSQYANRRSSDISGGEQQRVAICRAIANKPLIILADEPTGNLDLKTAQQVF 186
+LL + + +R + +SGG++QRVA+ RA+A +P ++L DEP G LD K +++
Sbjct: 111 VEELLELVQLEGLGDRYPNQLSGGQRQRVALARALAVEPQVLLLDEPFGALDAKVRKELR 170
Query: 187 SILKYLVVRSGLAALIATHNHDLASQMDRQITI 219
S L+ L + + TH+ + A ++ +I +
Sbjct: 171 SWLRKLHDEVHVTTVFVTHDQEEAMEVADRIVV 203
>gnl|CDD|132050 TIGR03005, ectoine_ehuA, ectoine/hydroxyectoine ABC transporter,
ATP-binding protein. Members of this family are the
ATP-binding protein of a conserved four gene ABC
transporter operon found next to ectoine unilization
operons and ectoine biosynthesis operons. Ectoine is a
compatible solute that protects enzymes from high
osmolarity. It is released by some species in response
to hypoosmotic shock, and it is taken up by a number of
bacteria as a compatible solute or for consumption. This
family shows strong sequence similiarity to a number of
amino acid ABC transporter ATP-binding proteins.
Length = 252
Score = 117 bits (295), Expect = 2e-27
Identities = 69/215 (32%), Positives = 111/215 (51%), Gaps = 14/215 (6%)
Query: 15 SYRQVGK---PFPVLENVHLSLKKGEIVALVSPSGTGKSTILHIAGLLEVPDQGNVIIAN 71
+ V K VL+ ++ S+ GE VAL+ PSG+GKSTIL I LE D+G + +
Sbjct: 2 RFSDVTKRFGILTVLDGLNFSVAAGEKVALIGPSGSGKSTILRILMTLEPIDEGQIQVEG 61
Query: 72 QLCNKLSDDKKSFLRCS---------KIGFVYQEHRLLMDFSVIENIIF-PQIIAGINHK 121
+ + + KIG V+Q L +V++N+ P ++ G+
Sbjct: 62 EQLYHMPGRNGPLVPADEKHLRQMRNKIGMVFQSFNLFPHKTVLDNVTEAPVLVLGMARA 121
Query: 122 TAYQRAMDLLSYMDMSQYANRRSSDISGGEQQRVAICRAIANKPLIILADEPTGNLDLKT 181
A +RAM+LL + ++ A+ + +SGG+QQRVAI RA+A +P ++L DE T LD +
Sbjct: 122 EAEKRAMELLDMVGLADKADHMPAQLSGGQQQRVAIARALAMRPKVMLFDEVTSALDPEL 181
Query: 182 AQQVFSILKYLVVRSGLAALIATHNHDLASQM-DR 215
+V ++++ L L L+ TH A + DR
Sbjct: 182 VGEVLNVIRRLASEHDLTMLLVTHEMGFAREFADR 216
>gnl|CDD|130254 TIGR01186, proV, glycine betaine/L-proline transport ATP binding
subunit. This model describes the glycine
betaine/L-proline ATP binding subunit in bacteria and
its equivalents in archaea. This transport system belong
to the larger ATP-Binding Cassette (ABC) transporter
superfamily. The characteristic feature of these
transporter is the obligatory coupling of ATP hydrolysis
to substrate translocation. The minimal configuration of
bacterial ABC transport system: an ATPase or ATP binding
subunit; An integral membrane protein; a hydrophilic
polypetpide, which likely functions as substrate binding
protein. Functionally, this transport system is involved
in osmoregulation. Under conditions of stress, the
organism recruits these transport system to accumulate
glycine betaine and other solutes which offer
osmo-protection. It has been demonstrated that glycine
betaine uptake is accompanied by symport with sodium
ions. The locus has been named variously as proU or
opuA. A gene library from L.lactis functionally
complements an E.coli proU mutant. The comlementing
locus is similar to a opuA locus in B.sutlis. This
clarifies the differences in nomenclature.
Length = 363
Score = 114 bits (288), Expect = 1e-26
Identities = 59/198 (29%), Positives = 101/198 (51%), Gaps = 1/198 (0%)
Query: 28 NVHLSLKKGEIVALVSPSGTGKSTILHIAGLLEVPDQGNVIIANQLCNKLSDDKKSFLRC 87
+ L++ KGEI ++ SG+GKST + + L P G + I + K S + +R
Sbjct: 11 DADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIEPTAGQIFIDGENIMKQSPVELREVRR 70
Query: 88 SKIGFVYQEHRLLMDFSVIENIIFPQIIAGINHKTAYQRAMDLLSYMDMSQYANRRSSDI 147
KIG V+Q+ L ++++N + G + ++A++LL + + +Y +R ++
Sbjct: 71 KKIGMVFQQFALFPHMTILQNTSLGPELLGWPEQERKEKALELLKLVGLEEYEHRYPDEL 130
Query: 148 SGGEQQRVAICRAIANKPLIILADEPTGNLDLKTAQQVFSILKYLVVRSGLAALIATHNH 207
SGG QQRV + RA+A +P I+L DE LD + LK L + TH+
Sbjct: 131 SGGMQQRVGLARALAAEPDILLMDEAFSALDPLIRDSMQDELKKLQATLQKTIVFITHDL 190
Query: 208 DLASQM-DRQITIRDGMI 224
D A ++ DR + ++ G I
Sbjct: 191 DEAIRIGDRIVIMKAGEI 208
>gnl|CDD|184199 PRK13639, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 275
Score = 114 bits (288), Expect = 2e-26
Identities = 70/204 (34%), Positives = 112/204 (54%), Gaps = 9/204 (4%)
Query: 25 VLENVHLSLKKGEIVALVSPSGTGKSTI-LHIAGLLEVPDQGNVIIANQLCNKLSDDKKS 83
L+ ++ +KGE+VAL+ P+G GKST+ LH G+L+ P G V+I + DKKS
Sbjct: 17 ALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILK-PTSGEVLIKG---EPIKYDKKS 72
Query: 84 FLRC-SKIGFVYQE-HRLLMDFSVIENIIFPQIIAGINHKTAYQRAMDLLSYMDMSQYAN 141
L +G V+Q L +V E++ F + G++ + +R + L + M + N
Sbjct: 73 LLEVRKTVGIVFQNPDDQLFAPTVEEDVAFGPLNLGLSKEEVEKRVKEALKAVGMEGFEN 132
Query: 142 RRSSDISGGEQQRVAICRAIANKPLIILADEPTGNLDLKTAQQVFSILKYLVVRSGLAAL 201
+ +SGG+++RVAI +A KP II+ DEPT LD A Q+ +L Y + + G+ +
Sbjct: 133 KPPHHLSGGQKKRVAIAGILAMKPEIIVLDEPTSGLDPMGASQIMKLL-YDLNKEGITII 191
Query: 202 IATHNHDLAS-QMDRQITIRDGMI 224
I+TH+ DL D+ + DG I
Sbjct: 192 ISTHDVDLVPVYADKVYVMSDGKI 215
>gnl|CDD|183063 PRK11264, PRK11264, putative amino-acid ABC transporter ATP-binding
protein YecC; Provisional.
Length = 250
Score = 113 bits (284), Expect = 4e-26
Identities = 72/206 (34%), Positives = 113/206 (54%), Gaps = 7/206 (3%)
Query: 25 VLENVHLSLKKGEIVALVSPSGTGKSTILHIAGLLEVPDQGNVIIANQLCN--KLSDDKK 82
VL + L +K GE+VA++ PSG+GK+T+L LLE P+ G + + + + + +K
Sbjct: 18 VLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQPEAGTIRVGDITIDTARSLSQQK 77
Query: 83 SFLRC--SKIGFVYQEHRLLMDFSVIENII-FPQIIAGINHKTAYQRAMDLLSYMDMSQY 139
+R +GFV+Q L +V+ENII P I+ G + A RA +LL+ + ++
Sbjct: 78 GLIRQLRQHVGFVFQNFNLFPHRTVLENIIEGPVIVKGEPKEEATARARELLAKVGLAGK 137
Query: 140 ANRRSSDISGGEQQRVAICRAIANKPLIILADEPTGNLDLKTAQQVFSILKYLVVRSGLA 199
+SGG+QQRVAI RA+A +P +IL DEPT LD + +V + ++ L +
Sbjct: 138 ETSYPRRLSGGQQQRVAIARALAMRPEVILFDEPTSALDPELVGEVLNTIRQL-AQEKRT 196
Query: 200 ALIATHNHDLASQM-DRQITIRDGMI 224
+I TH A + DR I + G I
Sbjct: 197 MVIVTHEMSFARDVADRAIFMDQGRI 222
>gnl|CDD|162242 TIGR01187, potA, spermidine/putrescine ABC transporter ATP-binding
subunit. This model describes spermidine/putrescine ABC
transporter, ATP binding subunit in bacteria and its
equivalents in archaea. This transport system belong to
the larger ATP-Binding Cassette (ABC) transporter
superfamily. The characteristic feature of these
transporter is the obligatory coupling of ATP hydrolysis
to substrate translocation. The minimal configuration of
bacterial ABC transport system: an ATPase or ATP binding
subunit; An integral membrane protein; a hydrophilic
polypetpide, which likely functions as substrate binding
protein. Polyamines like spermidine and putrescine play
vital role in cell proliferation, differentiation, and
ion homeostasis. The concentration of polyamines within
the cell are regulated by biosynthesis, degradation and
transport (uptake and efflux included).
Length = 325
Score = 113 bits (284), Expect = 4e-26
Identities = 58/186 (31%), Positives = 96/186 (51%), Gaps = 7/186 (3%)
Query: 41 LVSPSGTGKSTILHIAGLLEVPDQGNVIIANQLCNKLSDDKKSFLRCSKIGFVYQEHRLL 100
L+ PSG GK+T+L + E PD G++++ + + + I V+Q + L
Sbjct: 1 LLGPSGCGKTTLLRLLAGFEQPDSGSIMLDGEDVTNVPPHLRH------INMVFQSYALF 54
Query: 101 MDFSVIENIIFPQIIAGINHKTAYQRAMDLLSYMDMSQYANRRSSDISGGEQQRVAICRA 160
+V EN+ F + + R ++ L + + ++A+R+ +SGG+QQRVA+ RA
Sbjct: 55 PHMTVEENVAFGLKMRKVPRAEIKPRVLEALRLVQLEEFADRKPHQLSGGQQQRVALARA 114
Query: 161 IANKPLIILADEPTGNLDLKTAQQVFSILKYLVVRSGLAALIATHNHDLASQM-DRQITI 219
+ KP I+L DEP LD K Q+ LK + + G+ + TH+ + A M DR +
Sbjct: 115 LVFKPKILLLDEPLSALDKKLRDQMQLELKTIQEQLGITFVFVTHDQEEAMTMSDRIAIM 174
Query: 220 RDGMIA 225
R G IA
Sbjct: 175 RKGKIA 180
>gnl|CDD|163042 TIGR02857, CydD, thiol reductant ABC exporter, CydD subunit.
Unfortunately, the gene symbol nomenclature adopted
based on this operon in B. subtilis assigns cydC to the
third gene in the operon where this gene is actually
homologous to the E. coli cydD gene. We have chosen to
name all homologs in this family in accordance with the
precedence of publication of the E. coli name, CydD.
Length = 529
Score = 112 bits (283), Expect = 7e-26
Identities = 65/227 (28%), Positives = 103/227 (45%), Gaps = 22/227 (9%)
Query: 2 DSAEVLLLQNVKHSYRQVGKPFPVLENVHLSLKKGEIVALVSPSGTGKSTILH-IAGLLE 60
A L + +Y G+ P L V ++ GE VALV PSG GKST+L+ + G ++
Sbjct: 316 APAPSLEFSGLSVAYP--GRRAPALRPVSFTVPPGERVALVGPSGAGKSTLLNLLLGFVD 373
Query: 61 VPDQGNVIIANQLCNKLSDDKKSFLRCSKIGFVYQEHRLLMDFSVIENIIFPQIIAGINH 120
P +G++ + L+D R +I +V Q H L ++ ENI + A
Sbjct: 374 -PTEGSIAVNGV---PLADADADSWR-DQIAWVPQ-HPFLFAGTIAENIRLARPDAS--- 424
Query: 121 KTAYQRAMDLLSYMDMSQYA--------NRRSSDISGGEQQRVAICRAIANKPLIILADE 172
+RA++ + + +SGG+ QR+A+ RA ++L DE
Sbjct: 425 DAEIRRALERAGLDEFVAALPQGLDTLIGEGGAGLSGGQAQRLALARAFLRDAPLLLLDE 484
Query: 173 PTGNLDLKTAQQVFSILKYLVVRSGLAALIATHNHDLASQMDRQITI 219
PT +LD +T V L+ L G L+ TH LA + DR + +
Sbjct: 485 PTAHLDAETEALVTEALRAL--AQGRTVLLVTHRLALAERADRIVVL 529
>gnl|CDD|132313 TIGR03269, met_CoM_red_A2, methyl coenzyme M reductase system,
component A2. The enzyme that catalyzes the final step
in methanogenesis, methyl coenzyme M reductase, contains
alpha, beta, and gamma chains. In older literature, the
complex of alpha, beta, and gamma chains was termed
component C, while this single chain protein was termed
methyl coenzyme M reductase system component A2.
Length = 520
Score = 110 bits (277), Expect = 3e-25
Identities = 66/235 (28%), Positives = 116/235 (49%), Gaps = 33/235 (14%)
Query: 23 FPVLENVHLSLKKGEIVALVSPSGTGKSTILHI-AGLLEV-PDQGNVIIANQLC------ 74
VL+N+ ++++GE++ ++ SG GKS ++H+ G+ + P G +I LC
Sbjct: 13 KEVLKNISFTIEEGEVLGILGRSGAGKSVLMHVLRGMDQYEPTSGRIIYHVALCEKCGYV 72
Query: 75 --------------NKLSDDKKSFLRCSK---------IGFVYQE-HRLLMDFSVIENII 110
L ++ F S I + Q L D +V++N++
Sbjct: 73 ERPSKVGEPCPVCGGTLEPEEVDFWNLSDKLRRRIRKRIAIMLQRTFALYGDDTVLDNVL 132
Query: 111 FPQIIAGINHKTAYQRAMDLLSYMDMSQYANRRSSDISGGEQQRVAICRAIANKPLIILA 170
G K A RA+DL+ + +S + D+SGGE+QRV + R +A +P + LA
Sbjct: 133 EALEEIGYEGKEAVGRAVDLIEMVQLSHRITHIARDLSGGEKQRVVLARQLAKEPFLFLA 192
Query: 171 DEPTGNLDLKTAQQVFSILKYLVVRSGLAALIATHNHDLASQM-DRQITIRDGMI 224
DEPTG LD +TA+ V + L+ V SG++ ++ +H ++ + D+ I + +G I
Sbjct: 193 DEPTGTLDPQTAKLVHNALEEAVKASGISMVLTSHWPEVIEDLSDKAIWLENGEI 247
Score = 74.8 bits (184), Expect = 1e-14
Identities = 70/242 (28%), Positives = 118/242 (48%), Gaps = 31/242 (12%)
Query: 5 EVLLLQNVKHSYRQVGKPF-PVLENVHLSLKKGEIVALVSPSGTGKSTILHI-AGLLEVP 62
++ ++NV Y V + ++NV L +K+GEI +V SG GK+T+ I AG+LE P
Sbjct: 278 PIIKVRNVSKRYISVDRGVVKAVDNVSLEVKEGEIFGIVGTSGAGKTTLSKIIAGVLE-P 336
Query: 63 DQGNVIIANQLCNKLSDD-----KKSFL---RCSK-IGFVYQEHRLLMDFSVIENIIFPQ 113
G V ++ D+ K R + IG ++QE+ L +V++N+
Sbjct: 337 TSGEV------NVRVGDEWVDMTKPGPDGRGRAKRYIGILHQEYDLYPHRTVLDNLT-EA 389
Query: 114 IIAGINHKTAYQRAMDLLSYMDMSQ-YA----NRRSSDISGGEQQRVAICRAIANKPLII 168
I + + A +A+ L + + A ++ ++S GE+ RVA+ + + +P I+
Sbjct: 390 IGLELPDELARMKAVITLKMVGFDEEKAEEILDKYPDELSEGERHRVALAQVLIKEPRIV 449
Query: 169 LADEPTGNLDLKTAQQVF-SILKYLVVRSGLAA--LIATHNHDLASQM-DRQITIRDGMI 224
+ DEPTG +D T V SILK R + +I +H+ D + DR +RDG I
Sbjct: 450 ILDEPTGTMDPITKVDVTHSILK---AREEMEQTFIIVSHDMDFVLDVCDRAALMRDGKI 506
Query: 225 AD 226
Sbjct: 507 VK 508
>gnl|CDD|163196 TIGR03265, PhnT2, putative 2-aminoethylphosphonate ABC transporter,
ATP-binding protein. This ABC transporter ATP-binding
protein is found in a number of genomes in operon-like
contexts strongly suggesting a substrate specificity for
2-aminoethylphosphonate (2-AEP). The characterized
PhnSTUV system is absent in the genomes in which this
system is found. These genomes encode systems for the
catabolism of 2-AEP, making the need for a
2-AEP-specific transporter likely.
Length = 353
Score = 108 bits (272), Expect = 1e-24
Identities = 66/223 (29%), Positives = 115/223 (51%), Gaps = 11/223 (4%)
Query: 3 SAEVLLLQNVKHSYRQVGKPFPVLENVHLSLKKGEIVALVSPSGTGKSTILHIAGLLEVP 62
S+ L + N++ + F L+++ LS+KKGE V L+ PSG GK+T+L I LE
Sbjct: 1 SSPYLSIDNIRKRFGA----FTALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLERQ 56
Query: 63 DQGNVIIANQLCNKLSDDKKSFLRCSKIGFVYQEHRLLMDFSVIENIIFPQIIAGINHKT 122
G + + +L K+ + G V+Q + L + +V +NI + G+
Sbjct: 57 TAGTIYQGGRDITRLPPQKRDY------GIVFQSYALFPNLTVADNIAYGLKNRGMGRAE 110
Query: 123 AYQRAMDLLSYMDMSQYANRRSSDISGGEQQRVAICRAIANKPLIILADEPTGNLDLKTA 182
+R +LL + + + +SGG+QQRVA+ RA+A P ++L DEP LD +
Sbjct: 111 VAERVAELLDLVGLPGSERKYPGQLSGGQQQRVALARALATSPGLLLLDEPLSALDARVR 170
Query: 183 QQVFSILKYLVVRSGLAALIATHNHDLASQM-DRQITIRDGMI 224
+ + + ++ L R G+ ++ TH+ + A M DR + + G+I
Sbjct: 171 EHLRTEIRQLQRRLGVTTIMVTHDQEEALSMADRIVVMNHGVI 213
>gnl|CDD|163576 TIGR03864, PQQ_ABC_ATP, ABC transporter, ATP-binding subunit,
PQQ-dependent alcohol dehydrogenase system. Members of
this protein family are the ATP-binding subunit of an
ABC transporter system that is associated with PQQ
biosynthesis and PQQ-dependent alcohol dehydrogenases.
While this family shows homology to several efflux ABC
transporter subunits, the presence of a periplasmic
substrate-binding protein and association with systems
for catabolism of alcohols suggests a role in import
rather than detoxification.
Length = 236
Score = 107 bits (270), Expect = 2e-24
Identities = 61/218 (27%), Positives = 117/218 (53%), Gaps = 9/218 (4%)
Query: 7 LLLQNVKHSYRQVGKPFPVLENVHLSLKKGEIVALVSPSGTGKSTILHIAGLLEVPDQGN 66
L + + +Y L++V +++ GE VAL+ P+G GKST+ + L V +G
Sbjct: 2 LEVAGLSFAYGAR----RALDDVSFTVRPGEFVALLGPNGAGKSTLFSLLTRLYVAQEGQ 57
Query: 67 VIIANQLCNKLSDDKKSFLRCSKIGFVYQEHRLLMDFSVIENIIFPQIIAGINHKTAYQR 126
+ +A + L ++ L ++G V+Q+ L +D SV +N+ + + G++ A +R
Sbjct: 58 ISVAG---HDLRRAPRAALA--RLGVVFQQPTLDLDLSVRQNLRYHAALHGLSRAEARER 112
Query: 127 AMDLLSYMDMSQYANRRSSDISGGEQQRVAICRAIANKPLIILADEPTGNLDLKTAQQVF 186
LL+ + +++ A+ + +++GG ++RV I RA+ ++P ++L DEPT LD + +
Sbjct: 113 IAALLARLGLAERADDKVRELNGGHRRRVEIARALLHRPALLLLDEPTVGLDPASRAAIV 172
Query: 187 SILKYLVVRSGLAALIATHNHDLASQMDRQITIRDGMI 224
+ ++ L GL+ L ATH D DR + + G +
Sbjct: 173 AHVRALCRDQGLSVLWATHLVDEIEADDRLVVLHRGRV 210
>gnl|CDD|183056 PRK11248, tauB, taurine transporter ATP-binding subunit;
Provisional.
Length = 255
Score = 107 bits (268), Expect = 4e-24
Identities = 57/184 (30%), Positives = 99/184 (53%), Gaps = 11/184 (5%)
Query: 24 PVLENVHLSLKKGEIVALVSPSGTGKSTILH-IAGLLEVPDQGNVIIANQLCNKLSDDKK 82
P LE+++L+L+ GE++ ++ PSG GK+T+L+ IAG + G++ + + ++
Sbjct: 15 PALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVP-YQHGSITLDGKPVEGPGAER- 72
Query: 83 SFLRCSKIGFVYQEHRLLMDFSVIENIIFPQIIAGINHKTAYQRAMDLLSYMDMSQYANR 142
G V+Q LL +V +N+ F +AG+ + A +L + + R
Sbjct: 73 --------GVVFQNEGLLPWRNVQDNVAFGLQLAGVEKMQRLEIAHQMLKKVGLEGAEKR 124
Query: 143 RSSDISGGEQQRVAICRAIANKPLIILADEPTGNLDLKTAQQVFSILKYLVVRSGLAALI 202
+SGG++QRV I RA+A P ++L DEP G LD T +Q+ ++L L +G L+
Sbjct: 125 YIWQLSGGQRQRVGIARALAANPQLLLLDEPFGALDAFTREQMQTLLLKLWQETGKQVLL 184
Query: 203 ATHN 206
TH+
Sbjct: 185 ITHD 188
>gnl|CDD|182778 PRK10851, PRK10851, sulfate/thiosulfate transporter subunit;
Provisional.
Length = 353
Score = 105 bits (263), Expect = 1e-23
Identities = 64/210 (30%), Positives = 108/210 (51%), Gaps = 21/210 (10%)
Query: 25 VLENVHLSLKKGEIVALVSPSGTGKSTILHIAGLLEVPDQGNVIIANQLCNKLSDDKKSF 84
VL ++ L + G++VAL+ PSG+GK+T+L I LE G + +D +
Sbjct: 17 VLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQTSG------HIRFHGTDVSRLH 70
Query: 85 LRCSKIGFVYQEHRLLMDFSVIENIIFPQIIAGI---------NHKTAYQRAMDLLSYMD 135
R K+GFV+Q + L +V +NI F G+ N + LL +
Sbjct: 71 ARDRKVGFVFQHYALFRHMTVFDNIAF-----GLTVLPRRERPNAAAIKAKVTQLLEMVQ 125
Query: 136 MSQYANRRSSDISGGEQQRVAICRAIANKPLIILADEPTGNLDLKTAQQVFSILKYLVVR 195
++ A+R + +SGG++QRVA+ RA+A +P I+L DEP G LD + +++ L+ L
Sbjct: 126 LAHLADRYPAQLSGGQKQRVALARALAVEPQILLLDEPFGALDAQVRKELRRWLRQLHEE 185
Query: 196 SGLAALIATHNHDLASQM-DRQITIRDGMI 224
++ TH+ + A ++ DR + + G I
Sbjct: 186 LKFTSVFVTHDQEEAMEVADRVVVMSQGNI 215
>gnl|CDD|131377 TIGR02324, CP_lyasePhnL, phosphonate C-P lyase system protein PhnL.
Members of this family are the PhnL protein of C-P
lyase systems for utilization of phosphonates. These
systems resemble phosphonatase-based systems in having a
three component ABC transporter, where TIGR01097 is the
permease, TIGR01098 is the phosphonates binding protein,
and TIGR02315 is the ATP-binding cassette (ABC) protein.
They differ, however, in having, typically, ten or more
additional genes, many of which are believed to form a
membrane-associated C-P lysase complex. This protein
(PhnL) and the adjacent-encoded PhnK (TIGR02323)
resemble transporter ATP-binding proteins but are
suggested, based on mutatgenesis studies, to be part of
this C-P lyase complex rather than part of a transporter
per se.
Length = 224
Score = 104 bits (262), Expect = 2e-23
Identities = 70/216 (32%), Positives = 110/216 (50%), Gaps = 19/216 (8%)
Query: 16 YRQVGKPFPVLENVHLSLKKGEIVALVSPSGTGKSTILHIAGLLEVPDQGNVIIANQ--- 72
++Q G PVL+NV L++ GE VAL PSG GKST+L +PD G +++ ++
Sbjct: 14 HQQGGVRLPVLKNVSLTVNAGECVALSGPSGAGKSTLLKSLYANYLPDSGRILVRHEGAW 73
Query: 73 --LCNKLSDDKKSFLRCSKIGFVYQEHRLLMDFSVIENIIFPQIIAGINHKTAYQRAMDL 130
L + S + +R IG+V Q R++ S +E + P + G+ + A RA +L
Sbjct: 74 VDLA-QASPREVLEVRRKTIGYVSQFLRVIPRVSALEVVAEPLLERGVPREAARARAREL 132
Query: 131 LSYMDMSQYANRR-----SSDISGGEQQRVAICRAIANKPLIILADEPTGNLDLKTAQQV 185
L+ +++ + R + SGGEQQRV I R I+L DEPT +LD Q V
Sbjct: 133 LARLNIPE----RLWHLPPATFSGGEQQRVNIARGFIADYPILLLDEPTASLDAANRQVV 188
Query: 186 FSILKYLVVRSGLAALIAT-HNHDLASQM-DRQITI 219
++ R AALI H+ ++ + DR + +
Sbjct: 189 VELIAEAKARG--AALIGIFHDEEVRELVADRVMDV 222
>gnl|CDD|182182 PRK09984, PRK09984, phosphonate/organophosphate ester transporter
subunit; Provisional.
Length = 262
Score = 104 bits (261), Expect = 2e-23
Identities = 69/215 (32%), Positives = 122/215 (56%), Gaps = 19/215 (8%)
Query: 26 LENVHLSLKKGEIVALVSPSGTGKSTIL-HIAGLL---EVPDQGNVIIAN--QLCNKLSD 79
L V L++ GE+VAL+ PSG+GKST+L H++GL+ + ++ Q +L+
Sbjct: 20 LHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLITGDKSAGSHIELLGRTVQREGRLAR 79
Query: 80 D-KKSFLRCSKIGFVYQEHRLLMDFSVIENIIFPQIIAGINHKTAY--------QRAMDL 130
D +KS + G+++Q+ L+ SV+EN++ + + +T + QRA+
Sbjct: 80 DIRKSR---ANTGYIFQQFNLVNRLSVLENVLIGALGSTPFWRTCFSWFTREQKQRALQA 136
Query: 131 LSYMDMSQYANRRSSDISGGEQQRVAICRAIANKPLIILADEPTGNLDLKTAQQVFSILK 190
L+ + M +A++R S +SGG+QQRVAI RA+ + +ILADEP +LD ++A+ V L+
Sbjct: 137 LTRVGMVHFAHQRVSTLSGGQQQRVAIARALMQQAKVILADEPIASLDPESARIVMDTLR 196
Query: 191 YLVVRSGLAALIATHNHDLASQM-DRQITIRDGMI 224
+ G+ ++ H D A + +R + +R G +
Sbjct: 197 DINQNDGITVVVTLHQVDYALRYCERIVALRQGHV 231
>gnl|CDD|183226 PRK11607, potG, putrescine transporter ATP-binding subunit;
Provisional.
Length = 377
Score = 102 bits (255), Expect = 1e-22
Identities = 65/212 (30%), Positives = 108/212 (50%), Gaps = 17/212 (8%)
Query: 17 RQVGKPF---PVLENVHLSLKKGEIVALVSPSGTGKSTILHIAGLLEVPDQGNVIIANQL 73
R + K F +++V L++ KGEI AL+ SG GKST+L + E P G +++
Sbjct: 23 RNLTKSFDGQHAVDDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQPTAGQIMLDGV- 81
Query: 74 CNKLSDDKKSFLRCSKIGFVYQEHRLLMDFSVIENIIFPQIIAGINHKTAYQRAMDLLSY 133
LS + R I ++Q + L +V +NI F + R ++L
Sbjct: 82 --DLSH-VPPYQR--PINMMFQSYALFPHMTVEQNIAFGLKQDKLPKAEIASRVNEMLGL 136
Query: 134 MDMSQYANRRSSDISGGEQQRVAICRAIANKPLIILADEPTGNLDLKTAQ----QVFSIL 189
+ M ++A R+ +SGG++QRVA+ R++A +P ++L DEP G LD K +V IL
Sbjct: 137 VHMQEFAKRKPHQLSGGQRQRVALARSLAKRPKLLLLDEPMGALDKKLRDRMQLEVVDIL 196
Query: 190 KYLVVRSGLAALIATHNHDLASQMDRQITIRD 221
+ R G+ ++ TH+ + A M +I I +
Sbjct: 197 E----RVGVTCVMVTHDQEEAMTMAGRIAIMN 224
>gnl|CDD|130234 TIGR01166, cbiO, cobalt transport protein ATP-binding subunit.
This model describes the ATP binding subunit of the
multisubunit cobalt transporter in bacteria and its
equivalents in archaea. The model is restricted to ATP
subunit that is a part of the cobalt transporter, which
belongs to the ABC transporter superfamily (ATP Binding
Cassette). The model excludes ATP binding subunit that
are associated with other transporters belonging to ABC
transporter superfamily. This superfamily includes two
groups, one which catalyze the uptake of small
molecules, including ions from the external milieu and
the other group which is engaged in the efflux of small
molecular weight compounds and ions from within the
cell. Energy derived from the hydrolysis of ATP drive
the both the process of uptake and efflux.
Length = 190
Score = 100 bits (251), Expect = 3e-22
Identities = 63/189 (33%), Positives = 108/189 (57%), Gaps = 8/189 (4%)
Query: 25 VLENVHLSLKKGEIVALVSPSGTGKSTIL-HIAGLLEVPDQGNVIIANQLCNKLSDDKKS 83
VL+ ++ + ++GE++AL+ +G GKST+L H+ GLL P G V+I + L +K
Sbjct: 7 VLKGLNFAAERGEVLALLGANGAGKSTLLLHLNGLLR-PQSGAVLIDGE---PLDYSRKG 62
Query: 84 FLRC-SKIGFVYQE-HRLLMDFSVIENIIFPQIIAGINHKTAYQRAMDLLSYMDMSQYAN 141
L ++G V+Q+ L V +++ F + G++ +R + L+ + S
Sbjct: 63 LLERRQRVGLVFQDPDDQLFAADVDQDVAFGPLNLGLSEAEVERRVREALTAVGASGLRE 122
Query: 142 RRSSDISGGEQQRVAICRAIANKPLIILADEPTGNLDLKTAQQVFSILKYLVVRSGLAAL 201
R + +SGGE++RVAI A+A +P ++L DEPT LD +Q+ +IL+ L G+ +
Sbjct: 123 RPTHCLSGGEKKRVAIAGAVAMRPDVLLLDEPTAGLDPAGREQMLAILRRL-RAEGMTVV 181
Query: 202 IATHNHDLA 210
I+TH+ DLA
Sbjct: 182 ISTHDVDLA 190
>gnl|CDD|184197 PRK13637, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 287
Score = 100 bits (251), Expect = 3e-22
Identities = 73/230 (31%), Positives = 127/230 (55%), Gaps = 23/230 (10%)
Query: 9 LQNVKHSYRQVGKPFP--VLENVHLSLKKGEIVALVSPSGTGKST-ILHIAGLLEVPDQG 65
++N+ H Y + G PF L+NV++ ++ GE V L+ +G+GKST I H+ GLL+ P G
Sbjct: 5 IENLTHIYME-GTPFEKKALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLK-PTSG 62
Query: 66 NVIIANQLCN----KLSDDKKSFLRCSKIGFVYQ--EHRLLMDFSVIENIIFPQIIAGIN 119
+II KLSD +K K+G V+Q E++L + ++ ++I F I G++
Sbjct: 63 KIIIDGVDITDKKVKLSDIRK------KVGLVFQYPEYQLFEE-TIEKDIAFGPINLGLS 115
Query: 120 HKTAYQR---AMDLLSYMDMSQYANRRSSDISGGEQQRVAICRAIANKPLIILADEPTGN 176
+ R AM+++ +D Y ++ ++SGG+++RVAI +A +P I++ DEPT
Sbjct: 116 EEEIENRVKRAMNIVG-LDYEDYKDKSPFELSGGQKRRVAIAGVVAMEPKILILDEPTAG 174
Query: 177 LDLKTAQQVFSILKYLVVRSGLAALIATHN-HDLASQMDRQITIRDGMIA 225
LD K ++ + +K L + ++ +H+ D+A DR I + G
Sbjct: 175 LDPKGRDEILNKIKELHKEYNMTIILVSHSMEDVAKLADRIIVMNKGKCE 224
>gnl|CDD|183133 PRK11432, fbpC, ferric transporter ATP-binding subunit;
Provisional.
Length = 351
Score = 100 bits (250), Expect = 4e-22
Identities = 61/206 (29%), Positives = 110/206 (53%), Gaps = 10/206 (4%)
Query: 1 MDSAEVLLLQNVKHSYRQVGKPFPVLENVHLSLKKGEIVALVSPSGTGKSTILHIAGLLE 60
M ++L+N+ + G V++N++L++K+G +V L+ PSG GK+T+L + LE
Sbjct: 1 MTQKNFVVLKNITKRF---GSN-TVIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLE 56
Query: 61 VPDQGNVIIANQLCNKLSDDKKSFLRCSKIGFVYQEHRLLMDFSVIENIIFPQIIAGINH 120
P +G + I + D ++ I V+Q + L S+ EN+ + + G+
Sbjct: 57 KPTEGQIFIDGE------DVTHRSIQQRDICMVFQSYALFPHMSLGENVGYGLKMLGVPK 110
Query: 121 KTAYQRAMDLLSYMDMSQYANRRSSDISGGEQQRVAICRAIANKPLIILADEPTGNLDLK 180
+ QR + L +D++ + +R ISGG+QQRVA+ RA+ KP ++L DEP NLD
Sbjct: 111 EERKQRVKEALELVDLAGFEDRYVDQISGGQQQRVALARALILKPKVLLFDEPLSNLDAN 170
Query: 181 TAQQVFSILKYLVVRSGLAALIATHN 206
+ + ++ L + + +L TH+
Sbjct: 171 LRRSMREKIRELQQQFNITSLYVTHD 196
>gnl|CDD|184208 PRK13649, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 280
Score = 99.8 bits (249), Expect = 4e-22
Identities = 68/206 (33%), Positives = 119/206 (57%), Gaps = 10/206 (4%)
Query: 9 LQNVKHSYRQVGKPF--PVLENVHLSLKKGEIVALVSPSGTGKSTILHIAGLLEVPDQGN 66
LQNV ++Y Q G PF L +V+L+++ G A + +G+GKSTI+ + L VP QG+
Sbjct: 5 LQNVSYTY-QAGTPFEGRALFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHVPTQGS 63
Query: 67 VIIANQLCNKLSDDKK-SFLRCSKIGFVYQ-EHRLLMDFSVIENIIF-PQIIAGINHKTA 123
V + + L S +K +R K+G V+Q L + +V++++ F PQ G++ + A
Sbjct: 64 VRVDDTLITSTSKNKDIKQIR-KKVGLVFQFPESQLFEETVLKDVAFGPQNF-GVSQEEA 121
Query: 124 YQRAMDLLSYMDMSQ-YANRRSSDISGGEQQRVAICRAIANKPLIILADEPTGNLDLKTA 182
A + L+ + +S+ + ++SGG+ +RVAI +A +P I++ DEPT LD K
Sbjct: 122 EALAREKLALVGISESLFEKNPFELSGGQMRRVAIAGILAMEPKILVLDEPTAGLDPKGR 181
Query: 183 QQVFSILKYLVVRSGLAALIATHNHD 208
+++ ++ K L +SG+ ++ TH D
Sbjct: 182 KELMTLFKKL-HQSGMTIVLVTHLMD 206
>gnl|CDD|182592 PRK10619, PRK10619, histidine/lysine/arginine/ornithine transporter
subunit; Provisional.
Length = 257
Score = 98.9 bits (246), Expect = 9e-22
Identities = 60/204 (29%), Positives = 110/204 (53%), Gaps = 12/204 (5%)
Query: 25 VLENVHLSLKKGEIVALVSPSGTGKSTILHIAGLLEVPDQGNVIIANQLCN--------- 75
VL+ V L G++++++ SG+GKST L LE P +G++++ Q N
Sbjct: 20 VLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSEGSIVVNGQTINLVRDKDGQL 79
Query: 76 KLSDDKKSFLRCSKIGFVYQEHRLLMDFSVIENII-FPQIIAGINHKTAYQRAMDLLSYM 134
K++D + L +++ V+Q L +V+EN++ P + G++ + A +RA+ L+ +
Sbjct: 80 KVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKQEARERAVKYLAKV 139
Query: 135 DMSQYANRR-SSDISGGEQQRVAICRAIANKPLIILADEPTGNLDLKTAQQVFSILKYLV 193
+ + A + +SGG+QQRV+I RA+A +P ++L DEPT LD + +V I++ L
Sbjct: 140 GIDERAQGKYPVHLSGGQQQRVSIARALAMEPEVLLFDEPTSALDPELVGEVLRIMQQL- 198
Query: 194 VRSGLAALIATHNHDLASQMDRQI 217
G ++ TH A + +
Sbjct: 199 AEEGKTMVVVTHEMGFARHVSSHV 222
>gnl|CDD|184209 PRK13650, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 279
Score = 98.7 bits (246), Expect = 1e-21
Identities = 62/218 (28%), Positives = 116/218 (53%), Gaps = 8/218 (3%)
Query: 9 LQNVKHSYRQVGKPFPVLENVHLSLKKGEIVALVSPSGTGKSTILH-IAGLLEVPDQGNV 67
++N+ Y++ + L +V +K+GE ++++ +G+GKST + I GLLE + G +
Sbjct: 7 VKNLTFKYKE-DQEKYTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLE-AESGQI 64
Query: 68 IIANQLCNKLSDDKKSFLRCSKIGFVYQE-HRLLMDFSVIENIIFPQIIAGINHKTAYQR 126
II L L+++ +R KIG V+Q + +V +++ F GI H+ +R
Sbjct: 65 IIDGDL---LTEENVWDIR-HKIGMVFQNPDNQFVGATVEDDVAFGLENKGIPHEEMKER 120
Query: 127 AMDLLSYMDMSQYANRRSSDISGGEQQRVAICRAIANKPLIILADEPTGNLDLKTAQQVF 186
+ L + M + R + +SGG++QRVAI A+A +P II+ DE T LD + ++
Sbjct: 121 VNEALELVGMQDFKEREPARLSGGQKQRVAIAGAVAMRPKIIILDEATSMLDPEGRLELI 180
Query: 187 SILKYLVVRSGLAALIATHNHDLASQMDRQITIRDGMI 224
+K + + + TH+ D + DR + +++G +
Sbjct: 181 KTIKGIRDDYQMTVISITHDLDEVALSDRVLVMKNGQV 218
>gnl|CDD|182893 PRK11000, PRK11000, maltose/maltodextrin transporter ATP-binding
protein; Provisional.
Length = 369
Score = 98.6 bits (246), Expect = 1e-21
Identities = 56/171 (32%), Positives = 92/171 (53%), Gaps = 12/171 (7%)
Query: 9 LQNVKHSYRQVGKPFPVLENVHLSLKKGEIVALVSPSGTGKSTILH-IAGLLEVPDQGNV 67
L+NV +Y V + ++++L + +GE V V PSG GKST+L IAGL ++ G++
Sbjct: 6 LRNVTKAYGDV----VISKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLEDI-TSGDL 60
Query: 68 IIANQLCNKLSDDKKSFLRCSKIGFVYQEHRLLMDFSVIENIIFPQIIAGINHKTAYQRA 127
I + N + ++ +G V+Q + L SV EN+ F +AG + QR
Sbjct: 61 FIGEKRMNDVPPAERG------VGMVFQSYALYPHLSVAENMSFGLKLAGAKKEEINQRV 114
Query: 128 MDLLSYMDMSQYANRRSSDISGGEQQRVAICRAIANKPLIILADEPTGNLD 178
+ + ++ +R+ +SGG++QRVAI R + +P + L DEP NLD
Sbjct: 115 NQVAEVLQLAHLLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLD 165
>gnl|CDD|169949 PRK09536, btuD, corrinoid ABC transporter ATPase; Reviewed.
Length = 402
Score = 98.4 bits (245), Expect = 1e-21
Identities = 68/212 (32%), Positives = 110/212 (51%), Gaps = 18/212 (8%)
Query: 24 PVLENVHLSLKKGEIVALVSPSGTGKSTILH-IAGLLEVPDQGNVIIANQLCNKLSDDKK 82
VL+ V LS+++G +V LV P+G GK+T+L I G L P G V++A LS
Sbjct: 17 TVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLT-PTAGTVLVAGDDVEALSARAA 75
Query: 83 SFLRCSKIGFVYQEHRLLMDFSV---IENIIFPQI----IAGINHKTAYQRAMDLLSYMD 135
S ++ V Q+ L +F V +E P + A +RAM+
Sbjct: 76 S----RRVASVPQDTSLSFEFDVRQVVEMGRTPHRSRFDTWTETDRAAVERAME---RTG 128
Query: 136 MSQYANRRSSDISGGEQQRVAICRAIANKPLIILADEPTGNLDLKTAQQVFSILKYLVVR 195
++Q+A+R + +SGGE+QRV + RA+A ++L DEPT +LD+ + +++ L V
Sbjct: 129 VAQFADRPVTSLSGGERQRVLLARALAQATPVLLLDEPTASLDINHQVRTLELVRRL-VD 187
Query: 196 SGLAALIATHNHDLASQM-DRQITIRDGMIAD 226
G A+ A H+ DLA++ D + + DG +
Sbjct: 188 DGKTAVAAIHDLDLAARYCDELVLLADGRVRA 219
>gnl|CDD|184591 PRK14250, PRK14250, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 241
Score = 98.0 bits (244), Expect = 2e-21
Identities = 61/203 (30%), Positives = 107/203 (52%), Gaps = 18/203 (8%)
Query: 15 SYRQVGKPFPVLENVHLSLKKGEIVALVSPSGTGKSTILHIAGLLEVPDQGNVIIANQLC 74
SY GK +L+++ + + G I +V PSG GKST++ + L P +G+++I
Sbjct: 10 SYSSFGKE--ILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLIDPTEGSILIDG--- 64
Query: 75 NKLSDDKKSFLRCSKIGFVYQEHRLLMDFSVIENIIFPQIIAGINHKTAYQRAMDLLSYM 134
+ LR KIG V+Q+ L + +V +NI + ++ G ++ +D+ Y+
Sbjct: 65 VDIKTIDVIDLR-RKIGMVFQQPHLF-EGTVKDNIEYGPMLKG-------EKNVDVEYYL 115
Query: 135 DM----SQYANRRSSDISGGEQQRVAICRAIANKPLIILADEPTGNLDLKTAQQVFSILK 190
+ +YA R ++SGGE QRV+I R +AN P ++L DEPT LD + + + ++
Sbjct: 116 SIVGLNKEYATRDVKNLSGGEAQRVSIARTLANNPEVLLLDEPTSALDPTSTEIIEELIV 175
Query: 191 YLVVRSGLAALIATHNHDLASQM 213
L + L + THN + A ++
Sbjct: 176 KLKNKMNLTVIWITHNMEQAKRI 198
>gnl|CDD|182444 PRK10419, nikE, nickel transporter ATP-binding protein NikE;
Provisional.
Length = 268
Score = 96.7 bits (241), Expect = 4e-21
Identities = 72/210 (34%), Positives = 108/210 (51%), Gaps = 12/210 (5%)
Query: 7 LLLQNVKHSYRQVG-----KPFPVLENVHLSLKKGEIVALVSPSGTGKSTILHIAGLLEV 61
L + + H Y G + VL NV LSLK GE VAL+ SG GKST+ + LE
Sbjct: 4 LNVSGLSHHYAHGGLSGKHQHQTVLNNVSLSLKSGETVALLGRSGCGKSTLARLLVGLES 63
Query: 62 PDQGNVIIANQLCNKLS-DDKKSFLRCSKIGFVYQEHRLLMD--FSVIENIIFP-QIIAG 117
P QGNV + KL+ +K+F R I V+Q+ ++ +V E I P + +
Sbjct: 64 PSQGNVSWRGEPLAKLNRAQRKAFRR--DIQMVFQDSISAVNPRKTVREIIREPLRHLLS 121
Query: 118 INHKTAYQRAMDLLSYMDMS-QYANRRSSDISGGEQQRVAICRAIANKPLIILADEPTGN 176
++ RA ++L +D+ ++R +SGG+ QRV + RA+A +P +++ DE N
Sbjct: 122 LDKAERLARASEMLRAVDLDDSVLDKRPPQLSGGQLQRVCLARALAVEPKLLILDEAVSN 181
Query: 177 LDLKTAQQVFSILKYLVVRSGLAALIATHN 206
LDL V +LK L + G A L TH+
Sbjct: 182 LDLVLQAGVIRLLKKLQQQFGTACLFITHD 211
>gnl|CDD|132302 TIGR03258, PhnT, 2-aminoethylphosphonate ABC transport system,
ATP-binding component PhnT. This ATP-binding component
of an ABC transport system is found in Salmonella and
Burkholderia lineages in the vicinity of enzymes for the
breakdown of 2-aminoethylphosphonate.
Length = 362
Score = 95.8 bits (238), Expect = 9e-21
Identities = 59/208 (28%), Positives = 99/208 (47%), Gaps = 12/208 (5%)
Query: 25 VLENVHLSLKKGEIVALVSPSGTGKSTILH-IAGLLEVPD--QGNVIIANQLCNKLSDDK 81
VL+++ L ++ GE++AL+ SG GK+T+L IAG ++ G + IA++ K
Sbjct: 20 VLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVK-AAGLTGRIAIADRDLTHAPPHK 78
Query: 82 KSFLRCSKIGFVYQEHRLLMDFSVIENIIFPQIIAGINHKTAYQRAMDLLSYMDMSQYAN 141
+ + ++Q + L V +N+ F + +R D L + + A
Sbjct: 79 RG------LALLFQNYALFPHLKVEDNVAFGLRAQKMPKADIAERVADALKLVGLGDAAA 132
Query: 142 RRSSDISGGEQQRVAICRAIANKPLIILADEPTGNLDLKTAQQVFSILKYLVVR-SGLAA 200
+ +SGG QQR+AI RAIA +P ++L DEP LD + + L L
Sbjct: 133 HLPAQLSGGMQQRIAIARAIAIEPDVLLLDEPLSALDANIRANMREEIAALHEELPELTI 192
Query: 201 LIATHNHDLASQM-DRQITIRDGMIADL 227
L TH+ D A + D+ ++DG +A
Sbjct: 193 LCVTHDQDDALTLADKAGIMKDGRLAAH 220
>gnl|CDD|184195 PRK13635, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 279
Score = 95.1 bits (237), Expect = 1e-20
Identities = 65/224 (29%), Positives = 117/224 (52%), Gaps = 9/224 (4%)
Query: 5 EVLLLQNVKHSYRQVGKPFPVLENVHLSLKKGEIVALVSPSGTGKSTILH-IAGLLEVPD 63
E++ ++++ Y L++V S+ +GE VA+V +G+GKST+ + GLL +P+
Sbjct: 4 EIIRVEHISFRYPDAATY--ALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLL-LPE 60
Query: 64 QGNVIIANQLCNKLSDDKKSFLRCSKIGFVYQE-HRLLMDFSVIENIIFPQIIAGINHKT 122
G + + LS++ +R ++G V+Q + +V +++ F G+ +
Sbjct: 61 AGTITVGGM---VLSEETVWDVR-RQVGMVFQNPDNQFVGATVQDDVAFGLENIGVPREE 116
Query: 123 AYQRAMDLLSYMDMSQYANRRSSDISGGEQQRVAICRAIANKPLIILADEPTGNLDLKTA 182
+R L + M + NR +SGG++QRVAI +A +P II+ DE T LD +
Sbjct: 117 MVERVDQALRQVGMEDFLNREPHRLSGGQKQRVAIAGVLALQPDIIILDEATSMLDPRGR 176
Query: 183 QQVFSILKYLVVRSGLAALIATHNHDLASQMDRQITIRDGMIAD 226
++V ++ L + G+ L TH+ D A+Q DR I + G I +
Sbjct: 177 REVLETVRQLKEQKGITVLSITHDLDEAAQADRVIVMNKGEILE 220
>gnl|CDD|163509 TIGR03797, NHPM_micro_ABC2, NHPM bacteriocin system ABC
transporter, ATP-binding protein. Members of this
protein family are ABC transporter ATP-binding subunits,
part of a three-gene putative bacteriocin transport
operon. The other subunits include another ATP-binding
subunit (TIGR03796), which has an N-terminal propeptide
cleavage domain, and an HlyD homolog (TIGR03794). In a
number of genomes, a conserved propeptide sequence with
a classic Gly-Gly motif.
Length = 686
Score = 94.3 bits (235), Expect = 2e-20
Identities = 73/235 (31%), Positives = 106/235 (45%), Gaps = 43/235 (18%)
Query: 9 LQNVKHSYRQVGKPFPVLENVHLSLKKGEIVALVSPSGTGKSTILHIAGLL--EVPDQGN 66
+ V YR G +L++V L ++ GE VA+V PSG+GKST+L + LL E P+ G+
Sbjct: 454 VDRVTFRYRPDGPL--ILDDVSLQIEPGEFVAIVGPSGSGKSTLLRL--LLGFETPESGS 509
Query: 67 VIIANQLCNKLSDDKKSFLRCSKIGFVYQEHRLLMDFSVIENIIFPQIIAGINHKTAYQ- 125
V Q L+ +R ++G V Q RL M S+ ENI A + A++
Sbjct: 510 VFYDGQ---DLAGLDVQAVR-RQLGVVLQNGRL-MSGSIFENIA---GGAPLTLDEAWEA 561
Query: 126 ----------RAMDLLSYMDMSQYANRRSSDISGGEQQRVAICRAIANKPLIILADEPTG 175
RAM M M + +SGG++QR+ I RA+ KP I+L DE T
Sbjct: 562 ARMAGLAEDIRAMP----MGMHTVISEGGGTLSGGQRQRLLIARALVRKPRILLFDEATS 617
Query: 176 NLDLKTAQQVFSILKYLVVRSGLAALIATH---NHDLASQM--DRQITIRDGMIA 225
LD +T +V L L T H L++ DR + G +
Sbjct: 618 ALDNRTQA---------IVSESLERLKVTRIVIAHRLSTIRNADRIYVLDAGRVV 663
>gnl|CDD|130256 TIGR01188, drrA, daunorubicin resistance ABC transporter
ATP-binding subunit. This model describes daunorubicin
resistance ABC transporter, ATP binding subunit in
bacteria and archaea. This model is restricted in its
scope to preferentially recognize the ATP binding
subunit associated with effux of the drug, daunorubicin.
This transport system belong to the larger ATP-Binding
Cassette (ABC) transporter superfamily. The
characteristic feature of these transporter is the
obligatory coupling of ATP hydrolysis to substrate
translocation. The minimal configuration of bacterial
ABC transport system: an ATPase or ATP binding subunit;
An integral membrane protein; a hydrophilic polypetpide,
which likely functions as substrate binding protein. In
eukaryotes proteins of similar function include p-gyco
proteins, multidrug resistance protein etc.
Length = 302
Score = 94.4 bits (235), Expect = 2e-20
Identities = 55/204 (26%), Positives = 104/204 (50%), Gaps = 7/204 (3%)
Query: 23 FPVLENVHLSLKKGEIVALVSPSGTGKSTILHIAGLLEVPDQGNVIIANQLCNKLSDDKK 82
F ++ V+ +++GE+ + P+G GK+T + + L P G +A + + + +K
Sbjct: 6 FKAVDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLRPTSGTARVAGY--DVVREPRK 63
Query: 83 SFLRCSKIGFVYQEHRLLMDFSVIENIIFPQIIAGINHKTAYQRAMDLLSYMDMSQYANR 142
+R S IG V Q + D + EN+ + G+ A +RA +LL ++ + A+R
Sbjct: 64 --VRRS-IGIVPQYASVDEDLTGRENLEMMGRLYGLPKDEAEERAEELLELFELGEAADR 120
Query: 143 RSSDISGGEQQRVAICRAIANKPLIILADEPTGNLDLKTAQQVFSILKYLVVRSGLAALI 202
SGG ++R+ I ++ ++P ++ DEPT LD +T + ++ ++ L G+ L+
Sbjct: 121 PVGTYSGGMRRRLDIAASLIHQPDVLFLDEPTTGLDPRTRRAIWDYIRAL-KEEGVTILL 179
Query: 203 ATHNHDLASQM-DRQITIRDGMIA 225
TH + A ++ DR I G I
Sbjct: 180 TTHYMEEADKLCDRIAIIDHGRII 203
>gnl|CDD|184210 PRK13651, PRK13651, cobalt transporter ATP-binding subunit;
Provisional.
Length = 305
Score = 92.8 bits (231), Expect = 6e-20
Identities = 65/243 (26%), Positives = 125/243 (51%), Gaps = 31/243 (12%)
Query: 9 LQNVKHSYRQVGKP--FPVLENVHLSLKKGEIVALVSPSGTGKST-ILHIAGLLEVPDQG 65
++N+ + + P L+NV + + +GE +A++ +G+GK+T I H+ LL +PD G
Sbjct: 5 VKNIVKIFNK-KLPTELKALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALL-LPDTG 62
Query: 66 NV--IIANQLCNKLSDDKKSFL--------RCSKI----------GFVYQ--EHRLLMDF 103
+ I ++ K + +K+ L R KI G V+Q E++L +
Sbjct: 63 TIEWIFKDEKNKKKTKEKEKVLEKLVIQKTRFKKIKKIKEIRRRVGVVFQFAEYQLF-EQ 121
Query: 104 SVIENIIFPQIIAGINHKTAYQRAMDLLSYMDMSQ-YANRRSSDISGGEQQRVAICRAIA 162
++ ++IIF + G++ + A +RA + + + + Y R ++SGG+++RVA+ +A
Sbjct: 122 TIEKDIIFGPVSMGVSKEEAKKRAAKYIELVGLDESYLQRSPFELSGGQKRRVALAGILA 181
Query: 163 NKPLIILADEPTGNLDLKTAQQVFSILKYLVVRSGLAALIATHNHDLASQ-MDRQITIRD 221
+P ++ DEPT LD + +++ I L + G ++ TH+ D + R I +D
Sbjct: 182 MEPDFLVFDEPTAGLDPQGVKEILEIFDNL-NKQGKTIILVTHDLDNVLEWTKRTIFFKD 240
Query: 222 GMI 224
G I
Sbjct: 241 GKI 243
>gnl|CDD|184133 PRK13548, hmuV, hemin importer ATP-binding subunit; Provisional.
Length = 258
Score = 92.9 bits (232), Expect = 6e-20
Identities = 66/222 (29%), Positives = 107/222 (48%), Gaps = 21/222 (9%)
Query: 15 SYRQVGKPFPVLENVHLSLKKGEIVALVSPSGTGKSTIL-HIAGLLEVPDQGNVIIANQL 73
S R G+ +L++V L+L+ GE+VA++ P+G GKST+L ++G L PD G V + +
Sbjct: 9 SVRLGGRT--LLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELS-PDSGEVRLNGRP 65
Query: 74 CNKLSDDKKSFLRCSKIGFVYQEHRLLMDFSVIENI---IFPQIIAGINHKTAYQRAMDL 130
S + + R + Q L F+V E + P ++ A+
Sbjct: 66 LADWSPAELARRR----AVLPQHSSLSFPFTVEEVVAMGRAPHGLSRAEDDALVAAALAQ 121
Query: 131 LSYMDMSQYANRRSSDISGGEQQRVAICRAIA------NKPLIILADEPTGNLDLKTAQQ 184
+ D++ A R +SGGEQQRV + R +A P +L DEPT LDL
Sbjct: 122 V---DLAHLAGRDYPQLSGGEQQRVQLARVLAQLWEPDGPPRWLLLDEPTSALDLAHQHH 178
Query: 185 VFSILKYLVVRSGLAALIATHNHDLASQM-DRQITIRDGMIA 225
V + + L GLA ++ H+ +LA++ DR + + G +
Sbjct: 179 VLRLARQLAHERGLAVIVVLHDLNLAARYADRIVLLHQGRLV 220
>gnl|CDD|131816 TIGR02769, nickel_nikE, nickel import ATP-binding protein NikE.
This family represents the NikE subunit of a
multisubunit nickel import ABC transporter complex.
Nickel, once imported, may be used in urease and in
certain classes of hydrogenase and superoxide dismutase.
Length = 265
Score = 92.6 bits (230), Expect = 7e-20
Identities = 69/227 (30%), Positives = 115/227 (50%), Gaps = 12/227 (5%)
Query: 6 VLLLQNVKHSYRQVG-----KPFPVLENVHLSLKKGEIVALVSPSGTGKSTILHIAGLLE 60
+L +++V H+YR G + PVL NV LS+++GE V L+ SG GKST+ + LE
Sbjct: 2 LLEVRDVTHTYRTGGLFGAKQRAPVLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLE 61
Query: 61 VPDQGNVIIANQLCNKLS-DDKKSFLRCSKIGFVYQEHRLLMD-FSVIENIIFPQIIAGI 118
P QG V Q +L +++F R + V+Q+ ++ + II +
Sbjct: 62 KPAQGTVSFRGQDLYQLDRKQRRAFRR--DVQLVFQDSPSAVNPRMTVRQIIGEPLRHLT 119
Query: 119 NHKTAYQ--RAMDLLSYMDM-SQYANRRSSDISGGEQQRVAICRAIANKPLIILADEPTG 175
+ + Q R +LL + + S+ A++ +SGG+ QR+ I RA+A KP +I+ DE
Sbjct: 120 SLDESEQKARIAELLDMVGLRSEDADKLPRQLSGGQLQRINIARALAVKPKLIVLDEAVS 179
Query: 176 NLDLKTAQQVFSILKYLVVRSGLAALIATHNHDLASQMDRQITIRDG 222
NLD+ + +L+ L G A L TH+ L +++ + D
Sbjct: 180 NLDMVLQAVILELLRKLQQAFGTAYLFITHDLRLVQSFCQRVAVMDK 226
>gnl|CDD|184205 PRK13646, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 286
Score = 92.5 bits (230), Expect = 9e-20
Identities = 67/224 (29%), Positives = 117/224 (52%), Gaps = 12/224 (5%)
Query: 11 NVKHSYRQVGKPFP--VLENVHLSLKKGEIVALVSPSGTGKST-ILHIAGLLEVPDQGNV 67
NV ++Y++ G P+ + +V+ ++G+ A+V +G+GKST I +I LL+ P G V
Sbjct: 7 NVSYTYQK-GTPYEHQAIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLK-PTTGTV 64
Query: 68 IIAN-QLCNKLSDDKKSFLRCSKIGFVYQ--EHRLLMDFSVIENIIFPQIIAGINHKTAY 124
+ + + +K D +R +IG V+Q E +L D +V IIF +N
Sbjct: 65 TVDDITITHKTKDKYIRPVR-KRIGMVFQFPESQLFED-TVEREIIFGPKNFKMNLDEVK 122
Query: 125 QRAMDLLSYMDMSQYANRRSS-DISGGEQQRVAICRAIANKPLIILADEPTGNLDLKTAQ 183
A LL + S+ +S +SGG+ +++AI +A P II+ DEPT LD ++ +
Sbjct: 123 NYAHRLLMDLGFSRDVMSQSPFQMSGGQMRKIAIVSILAMNPDIIVLDEPTAGLDPQSKR 182
Query: 184 QVFSILKYLVVRSGLAALIATHN-HDLASQMDRQITIRDGMIAD 226
QV +LK L ++ +H+ +++A D I +++G I
Sbjct: 183 QVMRLLKSLQTDENKTIILVSHDMNEVARYADEVIVMKEGSIVS 226
>gnl|CDD|183055 PRK11247, ssuB, aliphatic sulfonates transport ATP-binding subunit;
Provisional.
Length = 257
Score = 92.0 bits (229), Expect = 1e-19
Identities = 67/220 (30%), Positives = 111/220 (50%), Gaps = 22/220 (10%)
Query: 7 LLLQNVKHSYRQVGKPFPVLENVHLSLKKGEIVALVSPSGTGKSTILHIAGLLEVPDQGN 66
LLL V Y + VL + L + G+ VA+V SG GKST+L + LE P G
Sbjct: 13 LLLNAVSKRYGE----RTVLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLETPSAGE 68
Query: 67 VIIANQLCNKLSDDKKSFLRCSKIGFVYQEHRLLMDFSVIENIIFPQIIAGINHKTAYQ- 125
++ + +D ++Q+ RLL VI+N+ G+ K ++
Sbjct: 69 LLAGTAPLAEARED---------TRLMFQDARLLPWKKVIDNV-------GLGLKGQWRD 112
Query: 126 RAMDLLSYMDMSQYANRRSSDISGGEQQRVAICRAIANKPLIILADEPTGNLDLKTAQQV 185
A+ L+ + ++ AN + +SGG++QRVA+ RA+ ++P ++L DEP G LD T ++
Sbjct: 113 AALQALAAVGLADRANEWPAALSGGQKQRVALARALIHRPGLLLLDEPLGALDALTRIEM 172
Query: 186 FSILKYLVVRSGLAALIATHNHDLASQM-DRQITIRDGMI 224
+++ L + G L+ TH+ A M DR + I +G I
Sbjct: 173 QDLIESLWQQHGFTVLLVTHDVSEAVAMADRVLLIEEGKI 212
>gnl|CDD|184193 PRK13633, PRK13633, cobalt transporter ATP-binding subunit;
Provisional.
Length = 280
Score = 90.9 bits (226), Expect = 3e-19
Identities = 66/226 (29%), Positives = 116/226 (51%), Gaps = 8/226 (3%)
Query: 3 SAEVLLLQNVKHSYR--QVGKPFPVLENVHLSLKKGEIVALVSPSGTGKSTIL-HIAGLL 59
E++ +NV + Y + L++V+L +KKGE + ++ +G+GKSTI H+ LL
Sbjct: 1 MNEMIKCKNVSYKYESNEESTEKLALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALL 60
Query: 60 EVPDQGNVIIANQLCNKLSDDKKSFLRCSKIGFVYQE-HRLLMDFSVIENIIFPQIIAGI 118
+P +G V + SD++ + +K G V+Q ++ V E++ F GI
Sbjct: 61 -IPSEGKVYVDGL---DTSDEENLWDIRNKAGMVFQNPDNQIVATIVEEDVAFGPENLGI 116
Query: 119 NHKTAYQRAMDLLSYMDMSQYANRRSSDISGGEQQRVAICRAIANKPLIILADEPTGNLD 178
+ +R + L + M +Y +SGG++QRVAI +A +P I+ DEPT LD
Sbjct: 117 PPEEIRERVDESLKKVGMYEYRRHAPHLLSGGQKQRVAIAGILAMRPECIIFDEPTAMLD 176
Query: 179 LKTAQQVFSILKYLVVRSGLAALIATHNHDLASQMDRQITIRDGMI 224
++V + +K L + G+ ++ TH + A + DR I + G +
Sbjct: 177 PSGRREVVNTIKELNKKYGITIILITHYMEEAVEADRIIVMDSGKV 222
>gnl|CDD|184194 PRK13634, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 290
Score = 90.1 bits (224), Expect = 4e-19
Identities = 72/224 (32%), Positives = 125/224 (55%), Gaps = 12/224 (5%)
Query: 9 LQNVKHSYRQVGKPFP--VLENVHLSLKKGEIVALVSPSGTGKSTIL-HIAGLLEVPDQG 65
Q V+H Y Q PF L +V++S+ G VA++ +G+GKST+L H+ GLL+ P G
Sbjct: 5 FQKVEHRY-QYKTPFERRALYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQ-PTSG 62
Query: 66 NVIIANQLCNKLSDDKK-SFLRCSKIGFVYQ--EHRLLMDFSVIENIIFPQIIAGINHKT 122
V I ++ +KK LR K+G V+Q EH+L + +V ++I F + G++ +
Sbjct: 63 TVTIGERVITAGKKNKKLKPLR-KKVGIVFQFPEHQLFEE-TVEKDICFGPMNFGVSEED 120
Query: 123 AYQRAMDLLSYMDMSQYANRRSS-DISGGEQQRVAICRAIANKPLIILADEPTGNLDLKT 181
A Q+A +++ + + + RS ++SGG+ +RVAI +A +P +++ DEPT LD K
Sbjct: 121 AKQKAREMIELVGLPEELLARSPFELSGGQMRRVAIAGVLAMEPEVLVLDEPTAGLDPKG 180
Query: 182 AQQVFSILKYLVVRSGLAALIATHN-HDLASQMDRQITIRDGMI 224
+++ + L GL ++ TH+ D A D+ + + G +
Sbjct: 181 RKEMMEMFYKLHKEKGLTTVLVTHSMEDAARYADQIVVMHKGTV 224
>gnl|CDD|184206 PRK13647, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 274
Score = 89.8 bits (223), Expect = 5e-19
Identities = 58/200 (29%), Positives = 111/200 (55%), Gaps = 9/200 (4%)
Query: 26 LENVHLSLKKGEIVALVSPSGTGKST-ILHIAGLLEVPDQGNVIIANQLCNKLSDDKKSF 84
L+ + LS+ +G AL+ P+G GKST +LH+ G+ +P +G V + + N + + +
Sbjct: 21 LKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGI-YLPQRGRVKVMGREVNA---ENEKW 76
Query: 85 LRCSKIGFVYQE-HRLLMDFSVIENIIFPQIIAGINHKTAYQRAMDLLSYMDMSQYANRR 143
+R SK+G V+Q+ + +V +++ F + G++ +R + L + M + ++
Sbjct: 77 VR-SKVGLVFQDPDDQVFSSTVWDDVAFGPVNMGLDKDEVERRVEEALKAVRMWDFRDKP 135
Query: 144 SSDISGGEQQRVAICRAIANKPLIILADEPTGNLDLKTAQQVFSILKYLVVRSGLAALIA 203
+S G+++RVAI +A P +I+ DEP LD + + + IL L G ++A
Sbjct: 136 PYHLSYGQKKRVAIAGVLAMDPDVIVLDEPMAYLDPRGQETLMEILDRL-HNQGKTVIVA 194
Query: 204 THNHDLASQ-MDRQITIRDG 222
TH+ DLA++ D+ I +++G
Sbjct: 195 THDVDLAAEWADQVIVLKEG 214
>gnl|CDD|130045 TIGR00972, 3a0107s01c2, phosphate ABC transporter, ATP-binding
protein. This model represents the ATP-binding protein
of a family of ABC transporters for inorganic phosphate.
In the model species Escherichia coli, a constitutive
transporter for inorganic phosphate, with low affinity,
is also present. The high affinity transporter that
includes this polypeptide is induced when extracellular
phosphate concentrations are low. The proteins most
similar to the members of this family but not included
appear to be amino acid transporters.
Length = 247
Score = 89.7 bits (223), Expect = 6e-19
Identities = 60/215 (27%), Positives = 99/215 (46%), Gaps = 24/215 (11%)
Query: 23 FPVLENVHLSLKKGEIVALVSPSGTGKSTILHIAGLLE--VPDQ---GNVIIANQLCNKL 77
L+N++L + K ++ AL+ PSG GKST+L + VP G V+ Q
Sbjct: 14 KEALKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGVRIEGKVLFDGQDIYDK 73
Query: 78 SDDKKSFLRCSKIGFVYQEHRLLMDFSVIENIIFPQIIAGI-NHKTAYQRAMDLLSYM-- 134
D R ++G V+Q+ S+ +NI + + GI + K + + L
Sbjct: 74 KIDVVELRR--RVGMVFQKPNPF-PMSIYDNIAYGPRLHGIKDKKELDEIVEESLKKAAL 130
Query: 135 ------DMSQYANRRSSDISGGEQQRVAICRAIANKPLIILADEPTGNLDLKTAQQVFSI 188
+ A +SGG+QQR+ I RA+A +P ++L DEPT LD ++ +
Sbjct: 131 WDEVKDRLHDSALG----LSGGQQQRLCIARALAVEPEVLLLDEPTSALDPIATGKIEEL 186
Query: 189 LKYLVVRSGLAALIATHNHDLASQM-DRQITIRDG 222
++ L + +I THN A+++ DR DG
Sbjct: 187 IQEL--KKKYTIVIVTHNMQQAARISDRTAFFYDG 219
>gnl|CDD|182331 PRK10247, PRK10247, putative ABC transporter ATP-binding protein
YbbL; Provisional.
Length = 225
Score = 89.4 bits (222), Expect = 7e-19
Identities = 62/220 (28%), Positives = 102/220 (46%), Gaps = 12/220 (5%)
Query: 1 MDSAEVLLLQNVKHSYRQVGKPFPVLENVHLSLKKGEIVALVSPSGTGKSTILHIAGLLE 60
+++ +L LQNV Y +L N+ SL+ GE + PSG GKST+L I L
Sbjct: 2 QENSPLLQLQNV--GYLAGDAK--ILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLI 57
Query: 61 VPDQGNVIIANQLCNKLSDDKKSFLRCSKIGFVYQEHRLLMDFSVIENIIFPQIIAGINH 120
P G ++ + + L + ++ + Q L D +V +N+IFP I N
Sbjct: 58 SPTSGTLLFEGEDISTLKPEIYR----QQVSYCAQTPTLFGD-TVYDNLIFPWQIR--NQ 110
Query: 121 KTAYQRAMDLLSYMDMSQYA-NRRSSDISGGEQQRVAICRAIANKPLIILADEPTGNLDL 179
+ +D L + + +++SGGE+QR+++ R + P ++L DE T LD
Sbjct: 111 QPDPAIFLDDLERFALPDTILTKNIAELSGGEKQRISLIRNLQFMPKVLLLDEITSALDE 170
Query: 180 KTAQQVFSILKYLVVRSGLAALIATHNHDLASQMDRQITI 219
V I+ V +A L TH+ D + D+ IT+
Sbjct: 171 SNKHNVNEIIHRYVREQNIAVLWVTHDKDEINHADKVITL 210
>gnl|CDD|182221 PRK10070, PRK10070, glycine betaine transporter ATP-binding
subunit; Provisional.
Length = 400
Score = 89.3 bits (221), Expect = 7e-19
Identities = 59/194 (30%), Positives = 105/194 (54%)
Query: 26 LENVHLSLKKGEIVALVSPSGTGKSTILHIAGLLEVPDQGNVIIANQLCNKLSDDKKSFL 85
+++ L++++GEI ++ SG+GKST++ + L P +G V+I K+SD + +
Sbjct: 44 VKDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIEPTRGQVLIDGVDIAKISDAELREV 103
Query: 86 RCSKIGFVYQEHRLLMDFSVIENIIFPQIIAGINHKTAYQRAMDLLSYMDMSQYANRRSS 145
R KI V+Q L+ +V++N F +AGIN + ++A+D L + + YA+
Sbjct: 104 RRKKIAMVFQSFALMPHMTVLDNTAFGMELAGINAEERREKALDALRQVGLENYAHSYPD 163
Query: 146 DISGGEQQRVAICRAIANKPLIILADEPTGNLDLKTAQQVFSILKYLVVRSGLAALIATH 205
++SGG +QRV + RA+A P I+L DE LD ++ L L + + +H
Sbjct: 164 ELSGGMRQRVGLARALAINPDILLMDEAFSALDPLIRTEMQDELVKLQAKHQRTIVFISH 223
Query: 206 NHDLASQMDRQITI 219
+ D A ++ +I I
Sbjct: 224 DLDEAMRIGDRIAI 237
>gnl|CDD|172200 PRK13652, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 277
Score = 88.7 bits (220), Expect = 1e-18
Identities = 59/216 (27%), Positives = 109/216 (50%), Gaps = 14/216 (6%)
Query: 10 QNVKHSYRQVGKPFPVLENVHLSLKKGEIVALVSPSGTGKSTIL-HIAGLLEVPDQGNVI 68
+++ +SY + L N++ + +A++ P+G GKST+ H G+L+ P G+V+
Sbjct: 7 RDLCYSYSGSKE---ALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILK-PTSGSVL 62
Query: 69 IANQLCNK--LSDDKKSFLRCSKIGFVYQE-HRLLMDFSVIENIIFPQIIAGINHKTAYQ 125
I + K + + +K +G V+Q + +V ++I F I G++ +T
Sbjct: 63 IRGEPITKENIREVRKF------VGLVFQNPDDQIFSPTVEQDIAFGPINLGLDEETVAH 116
Query: 126 RAMDLLSYMDMSQYANRRSSDISGGEQQRVAICRAIANKPLIILADEPTGNLDLKTAQQV 185
R L + + + +R +SGGE++RVAI IA +P +++ DEPT LD + +++
Sbjct: 117 RVSSALHMLGLEELRDRVPHHLSGGEKKRVAIAGVIAMEPQVLVLDEPTAGLDPQGVKEL 176
Query: 186 FSILKYLVVRSGLAALIATHNHDLASQMDRQITIRD 221
L L G+ + +TH DL +M I + D
Sbjct: 177 IDFLNDLPETYGMTVIFSTHQLDLVPEMADYIYVMD 212
>gnl|CDD|184204 PRK13645, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 289
Score = 88.9 bits (220), Expect = 1e-18
Identities = 63/236 (26%), Positives = 125/236 (52%), Gaps = 13/236 (5%)
Query: 1 MDSAEVLLLQNVKHSY-RQVGKPFPVLENVHLSLKKGEIVALVSPSGTGKSTILHIAGLL 59
D ++ ++L NV ++Y ++ F L N L+ KK ++ ++ +G+GKST++ + L
Sbjct: 1 FDFSKDIILDNVSYTYAKKTPFEFKALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGL 60
Query: 60 EVPDQGNVIIANQLC----NKLSDDKKSFLRCSKIGFVYQ--EHRLLMDFSVIENIIFPQ 113
+ + G I+ + K+ + K+ LR +IG V+Q E++L + ++ ++I F
Sbjct: 61 IISETGQTIVGDYAIPANLKKIKEVKR--LR-KEIGLVFQFPEYQLFQE-TIEKDIAFGP 116
Query: 114 IIAGINHKTAYQRAMDLLSYMDMSQ-YANRRSSDISGGEQQRVAICRAIANKPLIILADE 172
+ G N + AY++ +LL + + + Y R ++SGG+++RVA+ IA ++ DE
Sbjct: 117 VNLGENKQEAYKKVPELLKLVQLPEDYVKRSPFELSGGQKRRVALAGIIAMDGNTLVLDE 176
Query: 173 PTGNLDLKTAQQVFSILKYLVVRSGLAALIATHNHDLASQM-DRQITIRDGMIADL 227
PTG LD K + ++ + L ++ THN D ++ D I + +G + +
Sbjct: 177 PTGGLDPKGEEDFINLFERLNKEYKKRIIMVTHNMDQVLRIADEVIVMHEGKVISI 232
>gnl|CDD|131197 TIGR02142, modC_ABC, molybdenum ABC transporter, ATP-binding
protein. This model represents the ATP-binding cassette
(ABC) protein of the three subunit molybdate ABC
transporter. The three proteins of this complex are
homologous to proteins of the sulfate ABC transporter.
Molybdenum may be used in nitrogenases of
nitrogen-fixing bacteria and in molybdopterin cofactors.
In some cases, molybdate may be transported by a sulfate
transporter rather than by a specific molybdate
transporter.
Length = 354
Score = 88.6 bits (220), Expect = 1e-18
Identities = 59/204 (28%), Positives = 99/204 (48%), Gaps = 15/204 (7%)
Query: 29 VHLSLKKGEIVALVSPSGTGKSTILH-IAGLLEVPDQGNVIIANQLCNKLSDDKKSFLRC 87
+L + A+ SG+GK+T++ IAGL PD+G +++ + K FL
Sbjct: 16 ADFTLPGQGVTAIFGRSGSGKTTLIRLIAGLTR-PDEGEIVLNGRTLF--DSRKGIFLPP 72
Query: 88 SK--IGFVYQEHRLLMDFSVIENIIFPQIIAGINHKTAYQRAMD---LLSYMDMSQYANR 142
K IG+V+QE RL SV N+ + G+ +R + ++ + + R
Sbjct: 73 EKRRIGYVFQEARLFPHLSVRGNLRY-----GMKRARPSERRISFERVIELLGIGHLLGR 127
Query: 143 RSSDISGGEQQRVAICRAIANKPLIILADEPTGNLDLKTAQQVFSILKYLVVRSGLAALI 202
+SGGE+QRVAI RA+ + P ++L DEP LD ++ L+ L G+ L
Sbjct: 128 LPGRLSGGEKQRVAIGRALLSSPRLLLMDEPLAALDDPRKYEILPYLERLHAEFGIPILY 187
Query: 203 ATHNHDLASQM-DRQITIRDGMIA 225
+H+ ++ DR + + DG +A
Sbjct: 188 VSHSLQEVLRLADRVVVLEDGRVA 211
>gnl|CDD|130252 TIGR01184, ntrCD, nitrate transport ATP-binding subunits C and D.
This model describes the ATP binding subunits of nitrate
transport in bacteria and archaea. This protein belongs
to the ATP-binding cassette (ABC) superfamily. It is
thought that the two subunits encoded by ntrC and ntrD
form the binding surface for interaction with ATP. This
model is restricted in identifying ATP binding subunit
associated with the nitrate transport. Nitrate
assimilation is aided by other proteins derived from the
operon which among others include products of ntrA - a
regulatory protein; ntrB - a hydropbobic transmembrane
permease and narB - a reductase.
Length = 230
Score = 88.3 bits (219), Expect = 2e-18
Identities = 59/200 (29%), Positives = 107/200 (53%), Gaps = 12/200 (6%)
Query: 26 LENVHLSLKKGEIVALVSPSGTGKSTILHIAGLLEVPDQGNVIIANQLCNKLSDDKKSFL 85
L+ V+L++++GE ++L+ SG GKST+L++ L P G VI+ + + D+
Sbjct: 1 LKGVNLTIQQGEFISLIGHSGCGKSTLLNLISGLAQPTSGGVILEGKQITEPGPDRM--- 57
Query: 86 RCSKIGFVYQEHRLLMDFSVIENIIFPQIIAGINHKTAYQRAM--DLLSYMDMSQYANRR 143
V+Q + LL +V ENI + + +RA+ + ++ + +++ A++R
Sbjct: 58 ------VVFQNYSLLPWLTVRENIALAVDRVLPDLSKSERRAIVEEHIALVGLTEAADKR 111
Query: 144 SSDISGGEQQRVAICRAIANKPLIILADEPTGNLDLKTAQQVFSILKYLVVRSGLAALIA 203
+SGG +QRVAI RA++ +P ++L DEP G LD T + L + + L+
Sbjct: 112 PGQLSGGMKQRVAIARALSIRPKVLLLDEPFGALDALTRGNLQEELMQIWEEHRVTVLMV 171
Query: 204 THNHDLASQM-DRQITIRDG 222
TH+ D A + DR + + +G
Sbjct: 172 THDVDEALLLSDRVVMLTNG 191
>gnl|CDD|184124 PRK13537, PRK13537, nodulation ABC transporter NodI; Provisional.
Length = 306
Score = 87.9 bits (218), Expect = 2e-18
Identities = 61/221 (27%), Positives = 109/221 (49%), Gaps = 11/221 (4%)
Query: 3 SAEVLLLQNVKHSYRQVGKPFPVLENVHLSLKKGEIVALVSPSGTGKSTILHIAGLLEVP 62
S + +NV+ Y V++ + +++GE L+ P+G GK+T L + L P
Sbjct: 4 SVAPIDFRNVEKRYGDK----LVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHP 59
Query: 63 DQGNVIIANQLCNKLSDDKKSFLRCSKIGFVYQEHRLLMDFSVIENIIFPQIIAGINHKT 122
D G++ LC + + R ++G V Q L DF+V EN++ G++
Sbjct: 60 DAGSI----SLCGEPVPSRARHAR-QRVGVVPQFDNLDPDFTVRENLLVFGRYFGLSAAA 114
Query: 123 AYQRAMDLLSYMDMSQYANRRSSDISGGEQQRVAICRAIANKPLIILADEPTGNLDLKTA 182
A LL + + A+ + ++SGG ++R+ + RA+ N P +++ DEPT LD +
Sbjct: 115 ARALVPPLLEFAKLENKADAKVGELSGGMKRRLTLARALVNDPDVLVLDEPTTGLDPQAR 174
Query: 183 QQVFSILKYLVVRSGLAALIATHNHDLASQM-DRQITIRDG 222
++ L+ L+ R G L+ TH + A ++ DR I +G
Sbjct: 175 HLMWERLRSLLAR-GKTILLTTHFMEEAERLCDRLCVIEEG 214
>gnl|CDD|182817 PRK10895, PRK10895, lipopolysaccharide ABC transporter ATP-binding
protein; Provisional.
Length = 241
Score = 87.6 bits (217), Expect = 2e-18
Identities = 65/207 (31%), Positives = 104/207 (50%), Gaps = 19/207 (9%)
Query: 6 VLLLQNVKHSYRQVGKPFPVLENVHLSLKKGEIVALVSPSGTGKSTILHIAGLLEVPDQG 65
L +N+ +Y K V+E+V L++ GEIV L+ P+G GK+T ++ + D G
Sbjct: 3 TLTAKNLAKAY----KGRRVVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRDAG 58
Query: 66 NVIIANQLCNKLSDDKKSFL----RCSK-IGFVYQEHRLLMDFSVIENII-FPQIIAGIN 119
N+II D+ S L R + IG++ QE + SV +N++ QI ++
Sbjct: 59 NIII--------DDEDISLLPLHARARRGIGYLPQEASIFRRLSVYDNLMAVLQIRDDLS 110
Query: 120 HKTAYQRAMDLLSYMDMSQYANRRSSDISGGEQQRVAICRAIANKPLIILADEPTGNLDL 179
+ RA +L+ + + +SGGE++RV I RA+A P IL DEP +D
Sbjct: 111 AEQREDRANELMEEFHIEHLRDSMGQSLSGGERRRVEIARALAANPKFILLDEPFAGVDP 170
Query: 180 KTAQQVFSILKYLVVRSGLAALIATHN 206
+ + I+++L SGL LI HN
Sbjct: 171 ISVIDIKRIIEHL-RDSGLGVLITDHN 196
>gnl|CDD|162807 TIGR02323, CP_lyasePhnK, phosphonate C-P lyase system protein PhnK.
Members of this family are the PhnK protein of C-P
lyase systems for utilization of phosphonates. These
systems resemble phosphonatase-based systems in having a
three component ABC transporter, where TIGR01097 is the
permease, TIGR01098 is the phosphonates binding protein,
and TIGR02315 is the ATP-binding cassette (ABC) protein.
They differ, however, in having, typically, ten or more
additional genes, many of which are believed to form a
membrane-associated complex. This protein (PhnK) and the
adjacent-encoded PhnL resemble transporter ATP-binding
proteins but are suggested, based on mutatgenesis
studies, to be part of this complex rather than part of
a transporter per se.
Length = 253
Score = 87.6 bits (217), Expect = 2e-18
Identities = 65/212 (30%), Positives = 103/212 (48%), Gaps = 16/212 (7%)
Query: 28 NVHLSLKKGEIVALVSPSGTGKSTILH-IAGLLEVPDQGNVIIANQLCN-----KLSDDK 81
+V L GE++ +V SG+GKST+L +AG L PD G + +LS+ +
Sbjct: 21 DVSFDLYPGEVLGIVGESGSGKSTLLGCLAGRL-APDHGTATYIMRSGAELELYQLSEAE 79
Query: 82 KSFLRCSKIGFVYQEHR--LLMDFSVIENIIFPQIIAGINH-KTAYQRAMDLLSYMDMSQ 138
+ L ++ GFV+Q R L M S NI + G H A D L +++
Sbjct: 80 RRRLMRTEWGFVHQNPRDGLRMRVSAGANIGERLMAIGARHYGNIRAAAHDWLEEVEIDP 139
Query: 139 YANR---RSSDISGGEQQRVAICRAIANKPLIILADEPTGNLDLKTAQQVFSILKYLVVR 195
R SGG QQR+ I R + +P ++ DEPTG LD+ ++ +L+ LV
Sbjct: 140 --TRIDDLPRAFSGGMQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRD 197
Query: 196 SGLAALIATHNHDLASQM-DRQITIRDGMIAD 226
GLA +I TH+ +A + R + ++ G + +
Sbjct: 198 LGLAVIIVTHDLGVARLLAQRLLVMQQGRVVE 229
>gnl|CDD|182906 PRK11022, dppD, dipeptide transporter ATP-binding subunit;
Provisional.
Length = 326
Score = 87.1 bits (216), Expect = 3e-18
Identities = 66/207 (31%), Positives = 113/207 (54%), Gaps = 24/207 (11%)
Query: 20 GKPFPVLENVHLSLKKGEIVALVSPSGTGKS-TILHIAGLLEVPDQGNVIIANQL----- 73
PF ++ + S+K+GE+V +V SG+GKS + L I GL++ P + ++A +L
Sbjct: 17 SAPFRAVDRISYSVKQGEVVGIVGESGSGKSVSSLAIMGLIDYPGR---VMAEKLEFNGQ 73
Query: 74 -CNKLSDDKKSFLRCSKIGFVYQEHRLLMD------FSVIENIIFPQIIAGINHKTAYQR 126
++S+ ++ L +++ ++Q+ ++ F ++E I Q G N KT QR
Sbjct: 74 DLQRISEKERRNLVGAEVAMIFQDPMTSLNPCYTVGFQIMEAIKVHQ---GGNKKTRRQR 130
Query: 127 AMDLLSYMDMSQYANRRS---SDISGGEQQRVAICRAIANKPLIILADEPTGNLDLKTAQ 183
A+DLL+ + + A+R +SGG QRV I AIA +P +++ADEPT LD+
Sbjct: 131 AIDLLNQVGIPDPASRLDVYPHQLSGGMSQRVMIAMAIACRPKLLIADEPTTALDVTIQA 190
Query: 184 QVFSILKYLVVRSGLAALIATHNHDLA 210
Q+ +L L + +A ++ T HDLA
Sbjct: 191 QIIELLLELQQKENMALVLIT--HDLA 215
>gnl|CDD|163483 TIGR03771, anch_rpt_ABC, anchored repeat-type ABC transporter,
ATP-binding subunit. This protein family is the
ATP-binding cassette subunit of binding
protein-dependent ABC transporter complex that strictly
co-occurs with TIGR03769. TIGRFAMs model TIGR03769
describes a protein domain that occurs singly or as one
of up to three repeats in proteins of a number of
Actinobacteria, including Propionibacterium acnes
KPA171202. The TIGR03769 domain occurs both in an
adjacent gene for the substrate-binding protein and in
additional (often nearby) proteins, often with
LPXTG-like sortase recognition signals. Homologous
ATP-binding subunits outside the scope of this family
include manganese transporter MntA in Synechocystis sp.
PCC 6803 and chelated iron transporter subunits. The
function of this transporter complex is unknown.
Length = 223
Score = 86.4 bits (214), Expect = 5e-18
Identities = 65/206 (31%), Positives = 103/206 (50%), Gaps = 23/206 (11%)
Query: 31 LSLKKGEIVALVSPSGTGKSTILH-IAGLLEVPDQGNVIIANQLCNKLSDDKKSFLRCSK 89
LS KGE++ L+ P+G GK+T+L I GL+ P +G V +A
Sbjct: 1 LSADKGELLGLLGPNGAGKTTLLRAILGLIP-PAKGTVKVAG---------ASPGKGWRH 50
Query: 90 IGFVYQEHRLLMDFSV-IENIIFPQIIAGIN----HKTAYQRAM-DLLSYMDMSQYANRR 143
IG+V Q H DF + + + + I A A+ D L + +++ A+R
Sbjct: 51 IGYVPQRHEFAWDFPISVAHTVMSGRTGHIGWLRRPCVADFAAVRDALRRVGLTELADRP 110
Query: 144 SSDISGGEQQRVAICRAIANKPLIILADEPTGNLDLKTAQQVFSILKYLVVRSGLAALIA 203
++SGG++QRV + RA+A +P ++L DEP LD+ T + + + L +G A L+
Sbjct: 111 VGELSGGQRQRVLVARALATRPSVLLLDEPFTGLDMPTQELLTELFIEL-AGAGTAILMT 169
Query: 204 THNHDLASQM---DRQITIRDGMIAD 226
T HDLA M DR + + +IAD
Sbjct: 170 T--HDLAQAMATCDRVVLLNGRVIAD 193
>gnl|CDD|132456 TIGR03415, ABC_choXWV_ATP, choline ABC transporter, ATP-binding
protein. Members of this protein family are the
ATP-binding subunit of a three-protein transporter. This
family belongs, more broadly, to the family of proline
and glycine-betaine transporters, but members have been
identified by direct characterization and by
bioinformatic means as choline transporters. Many
species have several closely-related members of this
family, probably with variable abilities to act
additionally on related quaternary amines.
Length = 382
Score = 86.4 bits (214), Expect = 6e-18
Identities = 47/156 (30%), Positives = 84/156 (53%), Gaps = 4/156 (2%)
Query: 27 ENVHLSLKKGEIVALVSPSGTGKSTILHIAGLLEVPDQGNVII--ANQLCNKLSDDKKSF 84
N L +++GEI L+ SG+GKS++L L +G+V++ + + + D +
Sbjct: 41 ANASLDIEEGEICVLMGLSGSGKSSLLRAVNGLNPVSRGSVLVKDGDGSIDVANCDAATL 100
Query: 85 --LRCSKIGFVYQEHRLLMDFSVIENIIFPQIIAGINHKTAYQRAMDLLSYMDMSQYANR 142
LR ++ V+Q+ L+ +V EN+ F + G+ +R + L + ++Q+A++
Sbjct: 101 RRLRTHRVSMVFQKFALMPWLTVEENVAFGLEMQGMPEAERRKRVDEQLELVGLAQWADK 160
Query: 143 RSSDISGGEQQRVAICRAIANKPLIILADEPTGNLD 178
+ ++SGG QQRV + RA A I+L DEP LD
Sbjct: 161 KPGELSGGMQQRVGLARAFAMDADILLMDEPFSALD 196
>gnl|CDD|163239 TIGR03375, type_I_sec_LssB, type I secretion system ATPase, LssB
family. Type I protein secretion is a system in some
Gram-negative bacteria to export proteins (often
proteases) across both inner and outer membranes to the
extracellular medium. This is one of three proteins of
the type I secretion apparatus. Targeted proteins are
not cleaved at the N-terminus, but rather carry signals
located toward the extreme C-terminus to direct type I
secretion. This model is related to models TIGR01842 and
TIGR01846, and to bacteriocin ABC transporters that
cleave their substrates during export.
Length = 694
Score = 85.7 bits (213), Expect = 9e-18
Identities = 68/226 (30%), Positives = 111/226 (49%), Gaps = 47/226 (20%)
Query: 24 PVLENVHLSLKKGEIVALVSPSGTGKSTILH-IAGLLEVPDQGNVII----ANQLCNKLS 78
P L+NV L+++ GE VA++ G+GKST+L + GL + P +G+V++ Q+
Sbjct: 479 PALDNVSLTIRPGEKVAIIGRIGSGKSTLLKLLLGLYQ-PTEGSVLLDGVDIRQI----- 532
Query: 79 DDKKSFLRCSKIGFVYQEHRLLMDFSVIENIIF--PQI----------IAGIN-----HK 121
+ LR IG+V Q+ RL ++ +NI P +AG+ H
Sbjct: 533 --DPADLR-RNIGYVPQDPRLFYG-TLRDNIALGAPYADDEEILRAAELAGVTEFVRRHP 588
Query: 122 TAYQRAMDLLSYMDMSQYANRRSSDISGGEQQRVAICRAIANKPLIILADEPTGNLDLKT 181
DM Q R S +SGG++Q VA+ RA+ P I+L DEPT +D ++
Sbjct: 589 DGL----------DM-QIGERGRS-LSGGQRQAVALARALLRDPPILLLDEPTSAMDNRS 636
Query: 182 AQQVFSILKYLVVRSGLAALIATHNHDLASQMDRQITIRDG-MIAD 226
++ LK + +G ++ TH L +DR I + +G ++AD
Sbjct: 637 EERFKDRLKRWL--AGKTLVLVTHRTSLLDLVDRIIVMDNGRIVAD 680
>gnl|CDD|163051 TIGR02868, CydC, thiol reductant ABC exporter, CydC subunit. The
gene pair cydCD encodes an ABC-family transporter in
which each gene contains an N-terminal membrane-spanning
domain (pfam00664) and a C-terminal ATP-binding domain
(pfam00005). In E. coli these genes were discovered as
mutants which caused the terminal heme-copper oxidase
complex cytochrome bd to fail to assemble. Recent work
has shown that the transporter is involved in export of
redox-active thiol compounds such as cysteine and
glutathione. The linkage to assembly of the cytochrome
bd complex is further supported by the conserved operon
structure found outside the gammaproteobacteria
(cydABCD) containing both the transporter and oxidase
genes components. The genes used as the seed members for
this model are all either found in the
gammproteobacterial context or the CydABCD context. All
members of this family scoring above trusted at the time
of its creation were from genomes which encode a
cytochrome bd complex.
Length = 529
Score = 85.9 bits (213), Expect = 9e-18
Identities = 67/207 (32%), Positives = 104/207 (50%), Gaps = 20/207 (9%)
Query: 7 LLLQNVKHSYRQVGKPFPVLENVHLSLKKGEIVALVSPSGTGKSTILH-IAGLLEVPDQG 65
L L+++ S+ G P PVL+ V L L GE VA++ PSG+GKST+L + GLL+ P QG
Sbjct: 335 LELRDL--SFGYPGSP-PVLDGVSLDLPPGERVAILGPSGSGKSTLLMLLTGLLD-PLQG 390
Query: 66 NVIIANQLCNKLSDDKKSFLRCSKIGFVYQE-HRLLMDFSVIENIIFPQIIAGINHKTAY 124
V + + L D+ + R I Q+ H L D +V +N+ + A A
Sbjct: 391 EVTLDGVSVSSLQDELR---RR--ISVFAQDAH--LFDTTVRDNLRLGRPDATDEELWAA 443
Query: 125 QRAMDLLSYMD-----MSQYANRRSSDISGGEQQRVAICRAIANKPLIILADEPTGNLDL 179
+ L ++ + + +SGGE+QR+A+ RA+ I+L DEPT +LD
Sbjct: 444 LERVGLADWLRSLPDGLDTVLGEGGARLSGGERQRLALARALLADAPILLLDEPTEHLDA 503
Query: 180 KTAQQVFSILKYLVVRSGLAALIATHN 206
T ++ L L SG ++ TH+
Sbjct: 504 GTESELLEDL--LAALSGKTVVVITHH 528
>gnl|CDD|162132 TIGR00958, 3a01208, Conjugate Transporter-2 (CT2) Family protein.
Length = 711
Score = 85.5 bits (212), Expect = 9e-18
Identities = 60/209 (28%), Positives = 95/209 (45%), Gaps = 20/209 (9%)
Query: 24 PVLENVHLSLKKGEIVALVSPSGTGKSTILHIAGLLE---VPDQGNVIIANQLCNKLSDD 80
PVL+ + +L GE+VALV PSG+GKST +A LL+ P G V++ L
Sbjct: 495 PVLKGLTFTLHPGEVVALVGPSGSGKST---VAALLQNLYQPTGGQVLLDGV---PLVQY 548
Query: 81 KKSFLRCSKIGFVYQEHRLLMDFSVIENIIFPQIIAGINHKTAYQR---AMDLLSYMDMS 137
+L ++ V QE +L SV ENI + A + A D +
Sbjct: 549 DHHYLH-RQVALVGQE-PVLFSGSVRENIAYGLTDTPDEEIMAAAKAANAHDFIMEFPNG 606
Query: 138 QYAN--RRSSDISGGEQQRVAICRAIANKPLIILADEPTGNLDLKTAQQVFSILKYLVVR 195
+ S +SGG++QR+AI RA+ KP +++ DE T LD + Q + R
Sbjct: 607 YDTEVGEKGSQLSGGQKQRIAIARALVRKPRVLILDEATSALDAECEQLLQESRS----R 662
Query: 196 SGLAALIATHNHDLASQMDRQITIRDGMI 224
+ L+ H + D+ + ++ G +
Sbjct: 663 ASRTVLLIAHRLSTVERADQILVLKKGSV 691
>gnl|CDD|184200 PRK13640, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 282
Score = 85.2 bits (211), Expect = 1e-17
Identities = 56/211 (26%), Positives = 104/211 (49%), Gaps = 12/211 (5%)
Query: 22 PFPVLENVHLSLKKGEIVALVSPSGTGKSTILHIAGLLEVPDQGNVIIANQLCNKLSDDK 81
P L ++ S+ +G AL+ +G+GKSTI + L +PD L+
Sbjct: 19 KKPALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLPDDNPNSKITVDGITLTAKT 78
Query: 82 KSFLRCSKIGFVYQE-HRLLMDFSVIENIIFPQIIAGINHKTAYQRAM-----DLLSYMD 135
+R K+G V+Q + +V +++ F G+ ++ + M D+L+ +
Sbjct: 79 VWDIR-EKVGIVFQNPDNQFVGATVGDDVAF-----GLENRAVPRPEMIKIVRDVLADVG 132
Query: 136 MSQYANRRSSDISGGEQQRVAICRAIANKPLIILADEPTGNLDLKTAQQVFSILKYLVVR 195
M Y + +++SGG++QRVAI +A +P II+ DE T LD +Q+ +++ L +
Sbjct: 133 MLDYIDSEPANLSGGQKQRVAIAGILAVEPKIIILDESTSMLDPAGKEQILKLIRKLKKK 192
Query: 196 SGLAALIATHNHDLASQMDRQITIRDGMIAD 226
+ L + TH+ D A+ D+ + + DG +
Sbjct: 193 NNLTVISITHDIDEANMADQVLVLDDGKLLA 223
>gnl|CDD|183280 PRK11701, phnK, phosphonate C-P lyase system protein PhnK;
Provisional.
Length = 258
Score = 85.0 bits (211), Expect = 1e-17
Identities = 71/226 (31%), Positives = 108/226 (47%), Gaps = 29/226 (12%)
Query: 1 MDSAEVLLLQNVKHSY-RQVGKPFPVLENVHLSLKKGEIVALVSPSGTGKSTILH-IAGL 58
M +L ++ + Y + G +V L GE++ +V SG+GK+T+L+ ++
Sbjct: 1 MMDQPLLSVRGLTKLYGPRKG-----CRDVSFDLYPGEVLGIVGESGSGKTTLLNALSAR 55
Query: 59 LEVPDQGNVIIAN---QLCN--KLSDDKKSFLRCSKIGFVYQEHR--LLMDFSVIENIIF 111
L PD G V QL + LS+ ++ L ++ GFV+Q R L M S NI
Sbjct: 56 LA-PDAGEVHYRMRDGQLRDLYALSEAERRRLLRTEWGFVHQHPRDGLRMQVSAGGNIGE 114
Query: 112 PQIIAGINHKTAY----QRAMDLLSYMDMSQYANR---RSSDISGGEQQRVAICRAIANK 164
+ G H Y A D L +++ A R + SGG QQR+ I R +
Sbjct: 115 RLMAVGARH---YGDIRATAGDWLERVEID--AARIDDLPTTFSGGMQQRLQIARNLVTH 169
Query: 165 PLIILADEPTGNLDLKTAQQVFSILKYLVVRSGLAALIATHNHDLA 210
P ++ DEPTG LD+ ++ +L+ LV GLA +I T HDLA
Sbjct: 170 PRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVT--HDLA 213
>gnl|CDD|184201 PRK13641, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 287
Score = 84.9 bits (210), Expect = 1e-17
Identities = 62/211 (29%), Positives = 111/211 (52%), Gaps = 14/211 (6%)
Query: 10 QNVKHSYRQVGKPFPV--LENVHLSLKKGEIVALVSPSGTGKSTIL-HIAGLLEVPDQGN 66
+NV + Y G P L+N+ L++G VALV +G+GKST++ H LL+ P G
Sbjct: 6 ENVDYIYSP-GTPMEKKGLDNISFELEEGSFVALVGHTGSGKSTLMQHFNALLK-PSSGT 63
Query: 67 VIIANQLCNKLSDDKK-SFLRCSKIGFVYQ--EHRLLMDFSVIENIIFPQIIAGINHKTA 123
+ IA + +K LR K+ V+Q E +L + +V++++ F G + A
Sbjct: 64 ITIAGYHITPETGNKNLKKLR-KKVSLVFQFPEAQLFEN-TVLKDVEFGPKNFGFSEDEA 121
Query: 124 YQRAMDLLSYMDMS-QYANRRSSDISGGEQQRVAICRAIANKPLIILADEPTGNLDLKTA 182
++A+ L + +S ++ ++SGG+ +RVAI +A +P I+ DEP LD +
Sbjct: 122 KEKALKWLKKVGLSEDLISKSPFELSGGQMRRVAIAGVMAYEPEILCLDEPAAGLDPEGR 181
Query: 183 QQVFSILK-YLVVRSGLAALIATHNHDLASQ 212
+++ + K Y ++G ++ THN D ++
Sbjct: 182 KEMMQLFKDYQ--KAGHTVILVTHNMDDVAE 210
>gnl|CDD|183077 PRK11288, araG, L-arabinose transporter ATP-binding protein;
Provisional.
Length = 501
Score = 84.6 bits (210), Expect = 2e-17
Identities = 56/216 (25%), Positives = 106/216 (49%), Gaps = 13/216 (6%)
Query: 15 SYRQVGKPFP---VLENVHLSLKKGEIVALVSPSGTGKSTILHIAGLLEVPDQGNVIIAN 71
S+ +GK FP L+++ + G++ AL+ +G GKST+L I PD G+++I
Sbjct: 6 SFDGIGKTFPGVKALDDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQPDAGSILIDG 65
Query: 72 QLCNKLSDDKKSFLRCSKIGFVYQEHRLLMDFSVIENII---FPQIIAGINHKTAYQRAM 128
Q + + + + + +YQE L+ + +V EN+ P +N + A
Sbjct: 66 Q-EMRFASTTAALA--AGVAIIYQELHLVPEMTVAENLYLGQLPHKGGIVNRRLLNYEAR 122
Query: 129 DLLSYMDMSQYANRRSSDISGGEQQRVAICRAIANKPLIILADEPTGNLDLKTAQQVFSI 188
+ L ++ + + +S G++Q V I +A+A +I DEPT +L + +Q+F +
Sbjct: 123 EQLEHLGVDIDPDTPLKYLSIGQRQMVEIAKALARNARVIAFDEPTSSLSAREIEQLFRV 182
Query: 189 LKYLVVRS-GLAALIATHNHDLASQMDRQITI-RDG 222
++ L R+ G L +H + + IT+ +DG
Sbjct: 183 IREL--RAEGRVILYVSHRMEEIFALCDAITVFKDG 216
Score = 37.2 bits (87), Expect = 0.004
Identities = 25/81 (30%), Positives = 45/81 (55%), Gaps = 6/81 (7%)
Query: 148 SGGEQQRVAICRAIANKPLIILADEPTGNLDLKTAQQVFSILKYLVVRSGLAALIATHNH 207
SGG QQ+ + R ++ +IL DEPT +D+ ++++++ Y + G+A L +
Sbjct: 398 SGGNQQKAILGRWLSEDMKVILLDEPTRGIDVGAKHEIYNVI-YELAAQGVAVLFVS--S 454
Query: 208 DLASQM---DRQITIRDGMIA 225
DL + DR + +R+G IA
Sbjct: 455 DLPEVLGVADRIVVMREGRIA 475
>gnl|CDD|184126 PRK13539, PRK13539, cytochrome c biogenesis protein CcmA;
Provisional.
Length = 207
Score = 84.5 bits (210), Expect = 2e-17
Identities = 56/190 (29%), Positives = 85/190 (44%), Gaps = 24/190 (12%)
Query: 24 PVLENVHLSLKKGEIVALVSPSGTGKSTILH-IAGLLEVPDQGNVIIANQLCNKLSDDKK 82
+ + +L GE + L P+G+GK+T+L IAGLL P G + L DD
Sbjct: 16 VLFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLP-PAAGTIK----LDGGDIDDPD 70
Query: 83 SFLRCSKIGFVYQEHRLLM--DFSVIENIIFPQIIAGINHKTAYQRAMDLLSYMDMSQYA 140
C +G HR M +V EN+ F G L + ++ A
Sbjct: 71 VAEACHYLG-----HRNAMKPALTVAENLEFWAAFLG----GEELDIAAALEAVGLAPLA 121
Query: 141 NRRSSDISGGEQQRVAICR-AIANKPLIILADEPTGNLDLKTAQQVFS--ILKYLVVRSG 197
+ +S G+++RVA+ R ++N+P+ IL DEPT LD A +F+ I +L G
Sbjct: 122 HLPFGYLSAGQKRRVALARLLVSNRPIWIL-DEPTAALD-AAAVALFAELIRAHL--AQG 177
Query: 198 LAALIATHNH 207
+ ATH
Sbjct: 178 GIVIAATHIP 187
>gnl|CDD|162558 TIGR01846, type_I_sec_HlyB, type I secretion system ABC
transporter, HlyB family. Type I protein secretion is a
system in some Gram-negative bacteria to export proteins
(often proteases) across both inner and outer membranes
to the extracellular medium. This is one of three
proteins of the type I secretion apparatus. Targeted
proteins are not cleaved at the N-terminus, but rather
carry signals located toward the extreme C-terminus to
direct type I secretion.
Length = 694
Score = 84.4 bits (209), Expect = 2e-17
Identities = 63/223 (28%), Positives = 108/223 (48%), Gaps = 14/223 (6%)
Query: 9 LQNVKHSYRQVGKPFPVLENVHLSLKKGEIVALVSPSGTGKSTILHIAGLLEVPDQGNVI 68
+N++ Y P VL N++L +K GE + +V PSG+GKST+ + L P G V+
Sbjct: 458 FENIRFRYAP-DSP-EVLSNLNLDIKPGEFIGIVGPSGSGKSTLTKLLQRLYTPQHGQVL 515
Query: 69 IANQLCNKLSDDKKSFLRCSKIGFVYQEHRLLMDFSVIENIIF--PQI-IAGINHKTAYQ 125
+ L+ ++LR ++G V QE+ +L S+ +NI P + H
Sbjct: 516 VDGV---DLAIADPAWLR-RQMGVVLQEN-VLFSRSIRDNIALCNPGAPFEHVIHAAKLA 570
Query: 126 RAMDLLSYM--DMSQYANRRSSDISGGEQQRVAICRAIANKPLIILADEPTGNLDLKTAQ 183
A D +S + + + +++SGG++QR+AI RA+ P I++ DE T LD ++
Sbjct: 571 GAHDFISELPQGYNTEVGEKGANLSGGQRQRIAIARALVGNPRILIFDEATSALDYESEA 630
Query: 184 QVFSILKYLVVRSGLAALIATHNHDLASQMDRQITIRDGMIAD 226
+ ++ + G +I H DR I + G IA+
Sbjct: 631 LIMRNMREIC--RGRTVIIIAHRLSTVRACDRIIVLEKGQIAE 671
>gnl|CDD|163585 TIGR03873, F420-0_ABC_ATP, proposed F420-0 ABC transporter,
ATP-binding protein. This small clade of ABC-type
transporter ATP-binding protein components is found as a
three gene cassette along with a periplasmic
substrate-binding protein (TIGR03868) and a permease
(TIGR03869). The organisms containing this cassette are
all Actinobacteria and all contain numerous genes
requiring the coenzyme F420. This model was defined
based on five such organisms, four of which are lacking
all F420 biosynthetic capability save the final
side-chain polyglutamate attachment step (via the gene
cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and
marine actinobacterium PHSC20C1 this cassette is in an
apparent operon with the cofE gene and, in PHSC20C1,
also with a F420-dependent glucose-6-phosphate
dehydrogenase (TIGR03554). Based on these observations
we propose that this ATP-binding protein is a component
of an F420-0 (that is, F420 lacking only the
polyglutamate tail) transporter.
Length = 256
Score = 84.5 bits (209), Expect = 2e-17
Identities = 55/205 (26%), Positives = 103/205 (50%), Gaps = 13/205 (6%)
Query: 24 PVLENVHLSLKKGEIVALVSPSGTGKSTILHIAGLLEVPDQGNVIIANQLCNKLSDDKKS 83
+++ V ++ G + L+ P+G+GKST+L + PD G V +A + LS
Sbjct: 15 LIVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGALRPDAGTVDLAGVDLHGLSRRA-- 72
Query: 84 FLRCSKIGFVYQEHRLLMDFSVIENIIFPQI------IAGINHKTAYQRAMDLLSYMDMS 137
R ++ V Q+ + +V + + +I H A L+ ++S
Sbjct: 73 --RARRVALVEQDSDTAVPLTVRDVVALGRIPHRSLWAGDSPHDAAVVDRA--LARTELS 128
Query: 138 QYANRRSSDISGGEQQRVAICRAIANKPLIILADEPTGNLDLKTAQQVFSILKYLVVRSG 197
A+R S +SGGE+QRV + RA+A +P ++L DEPT +LD++ + ++++ L +G
Sbjct: 129 HLADRDMSTLSGGERQRVHVARALAQEPKLLLLDEPTNHLDVRAQLETLALVREL-AATG 187
Query: 198 LAALIATHNHDLASQMDRQITIRDG 222
+ + A H+ +LA+ + + DG
Sbjct: 188 VTVVAALHDLNLAASYCDHVVVLDG 212
>gnl|CDD|130344 TIGR01277, thiQ, thiamine ABC transporter, ATP-binding protein.
This model describes the energy-transducing ATPase
subunit ThiQ of the ThiBPQ thiamine (and thiamine
pyrophosphate) ABC transporter in several
Proteobacteria. This protein is found so far only in
Proteobacteria, and is found in complete genomes only if
the ThiB and ThiP subunits are also found.
Length = 213
Score = 84.5 bits (209), Expect = 2e-17
Identities = 55/200 (27%), Positives = 101/200 (50%), Gaps = 15/200 (7%)
Query: 31 LSLKKGEIVALVSPSGTGKSTILH-IAGLLEVPDQGNVIIANQLCNKLSDDKKSFLRCSK 89
L++ GEIVA++ PSG GKST+L+ IAG +E P G++ + +Q L+ ++
Sbjct: 19 LNVADGEIVAIMGPSGAGKSTLLNLIAGFIE-PASGSIKVNDQSHTGLAPYQRPV----- 72
Query: 90 IGFVYQEHRLLMDFSVIENI---IFPQIIAGINHKTAYQRAMDLLSYMDMSQYANRRSSD 146
++QE+ L +V +NI + P + + ++ +D + ++ Y +R
Sbjct: 73 -SMLFQENNLFAHLTVRQNIGLGLHPGLKLNAEQQ---EKVVDAAQQVGIADYLDRLPEQ 128
Query: 147 ISGGEQQRVAICRAIANKPLIILADEPTGNLDLKTAQQVFSILKYLVVRSGLAALIATHN 206
+SGG++QRVA+ R + I+L DEP LD +++ +++K L L+ TH+
Sbjct: 129 LSGGQRQRVALARCLVRPNPILLLDEPFSALDPLLREEMLALVKQLCSERQRTLLMVTHH 188
Query: 207 -HDLASQMDRQITIRDGMIA 225
D + + + G I
Sbjct: 189 LSDARAIASQIAVVSQGKIK 208
>gnl|CDD|184123 PRK13536, PRK13536, nodulation factor exporter subunit NodI;
Provisional.
Length = 340
Score = 84.1 bits (208), Expect = 2e-17
Identities = 61/215 (28%), Positives = 104/215 (48%), Gaps = 11/215 (5%)
Query: 9 LQNVKHSYRQVGKPFPVLENVHLSLKKGEIVALVSPSGTGKSTILHIAGLLEVPDQGNVI 68
L V SY K V+ + ++ GE L+ P+G GKSTI + + PD G +
Sbjct: 44 LAGVSKSYG--DKA--VVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTSPDAGKIT 99
Query: 69 IANQLCNKLSDDKKSFLRCSKIGFVYQEHRLLMDFSVIENIIFPQIIAGINHKTAYQRAM 128
+ ++ L ++IG V Q L ++F+V EN++ G++ +
Sbjct: 100 VLGV-----PVPARARLARARIGVVPQFDNLDLEFTVRENLLVFGRYFGMSTREIEAVIP 154
Query: 129 DLLSYMDMSQYANRRSSDISGGEQQRVAICRAIANKPLIILADEPTGNLDLKTAQQVFSI 188
LL + + A+ R SD+SGG ++R+ + RA+ N P +++ DEPT LD ++
Sbjct: 155 SLLEFARLESKADARVSDLSGGMKRRLTLARALINDPQLLILDEPTTGLDPHARHLIWER 214
Query: 189 LKYLVVRSGLAALIATHNHDLASQM-DRQITIRDG 222
L+ L+ R G L+ TH + A ++ DR + G
Sbjct: 215 LRSLLAR-GKTILLTTHFMEEAERLCDRLCVLEAG 248
>gnl|CDD|172743 PRK14255, PRK14255, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 252
Score = 83.5 bits (206), Expect = 4e-17
Identities = 61/201 (30%), Positives = 103/201 (51%), Gaps = 15/201 (7%)
Query: 23 FPVLENVHLSLKKGEIVALVSPSGTGKSTILHIAGLLE--VPD---QGNVIIANQLCNKL 77
F L+ + L + EI AL+ PSG GKST L + +P GNV + Q
Sbjct: 18 FEALKGIDLDFNQNEITALIGPSGCGKSTYLRTLNRMNDLIPGVTITGNVSLRGQNIYAP 77
Query: 78 SDDKKSFLRCSKIGFVYQEHRLLMDFSVIENIIFPQIIAGINHKTAYQRAMDL-----LS 132
++D + ++G V+Q+ FS+ EN+I+ +AG+ K A++
Sbjct: 78 NEDVVQLRK--QVGMVFQQPNPF-PFSIYENVIYGLRLAGVKDKAVLDEAVETSLKQAAI 134
Query: 133 YMDMSQYANRRSSDISGGEQQRVAICRAIANKPLIILADEPTGNLDLKTAQQVFSILKYL 192
+ ++ + + + +SGG+QQRV I R +A KP +IL DEPT LD ++ Q+ ++L L
Sbjct: 135 WDEVKDHLHESALSLSGGQQQRVCIARVLAVKPDVILLDEPTSALDPISSTQIENML--L 192
Query: 193 VVRSGLAALIATHNHDLASQM 213
+R ++ TH+ AS++
Sbjct: 193 ELRDQYTIILVTHSMHQASRI 213
>gnl|CDD|184203 PRK13643, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 288
Score = 83.2 bits (205), Expect = 5e-17
Identities = 64/222 (28%), Positives = 118/222 (53%), Gaps = 9/222 (4%)
Query: 9 LQNVKHSYRQVGKPFP--VLENVHLSLKKGEIVALVSPSGTGKSTIL-HIAGLLEVPDQG 65
+ V ++Y Q PF L ++ L +KKG AL+ +G+GKST+L H+ GLL+ P +G
Sbjct: 4 FEKVNYTY-QPNSPFASRALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQ-PTEG 61
Query: 66 NVIIANQLCNKLSDDKKSFLRCSKIGFVYQ-EHRLLMDFSVIENIIFPQIIAGINHKTAY 124
V + + + + S K+ K+G V+Q L + +V++++ F GI + A
Sbjct: 62 KVTVGDIVVSSTSKQKEIKPVRKKVGVVFQFPESQLFEETVLKDVAFGPQNFGIPKEKAE 121
Query: 125 QRAMDLLSYMDMS-QYANRRSSDISGGEQQRVAICRAIANKPLIILADEPTGNLDLKTAQ 183
+ A + L + ++ ++ + ++SGG+ +RVAI +A +P +++ DEPT LD K
Sbjct: 122 KIAAEKLEMVGLADEFWEKSPFELSGGQMRRVAIAGILAMEPEVLVLDEPTAGLDPKARI 181
Query: 184 QVFSILKYLVVRSGLAALIATH-NHDLASQMDRQITIRDGMI 224
++ + + + +SG ++ TH D+A D + G I
Sbjct: 182 EMMQLFES-IHQSGQTVVLVTHLMDDVADYADYVYLLEKGHI 222
>gnl|CDD|185088 PRK15134, PRK15134, microcin C ABC transporter ATP-binding protein
YejF; Provisional.
Length = 529
Score = 82.8 bits (205), Expect = 6e-17
Identities = 65/229 (28%), Positives = 117/229 (51%), Gaps = 14/229 (6%)
Query: 7 LLLQNVKHSYRQVGKPFPVLENVHLSLKKGEIVALVSPSGTGKS-TILHIAGLLEVPD-- 63
L ++N+ ++RQ V+ +V L ++ GE +ALV SG+GKS T L I LL P
Sbjct: 6 LAIENLSVAFRQQQTVRTVVNDVSLQIEAGETLALVGESGSGKSVTALSILRLLPSPPVV 65
Query: 64 --QGNVIIANQLCNKLSDDKKSFLRCSKIGFVYQEHRL-LMDFSVIENIIFPQIIA---G 117
G++ + S+ +R +KI ++QE + L +E ++ ++++ G
Sbjct: 66 YPSGDIRFHGESLLHASEQTLRGVRGNKIAMIFQEPMVSLNPLHTLEKQLY-EVLSLHRG 124
Query: 118 INHKTAYQRAMDLLSYMDMSQYANRRSS---DISGGEQQRVAICRAIANKPLIILADEPT 174
+ + A ++ L + + Q A R + +SGGE+QRV I A+ +P +++ADEPT
Sbjct: 125 MRREAARGEILNCLDRVGIRQAAKRLTDYPHQLSGGERQRVMIAMALLTRPELLIADEPT 184
Query: 175 GNLDLKTAQQVFSILKYLVVRSGLAALIATHNHDLASQM-DRQITIRDG 222
LD+ Q+ +L+ L + L THN + ++ DR +++G
Sbjct: 185 TALDVSVQAQILQLLRELQQELNMGLLFITHNLSIVRKLADRVAVMQNG 233
Score = 72.4 bits (178), Expect = 8e-14
Identities = 60/197 (30%), Positives = 103/197 (52%), Gaps = 27/197 (13%)
Query: 25 VLENVHLSLKKGEIVALVSPSGTGKSTILHIAGLLEVPDQGNVIIANQLCNKLSDDKKSF 84
V++N+ +L+ GE + LV SG+GKST +A L + QG + Q + L+ +
Sbjct: 301 VVKNISFTLRPGETLGLVGESGSGKSTT-GLALLRLINSQGEIWFDGQPLHNLNRRQLLP 359
Query: 85 LRCSKIGFVYQEH------RLLMDFSVIENIIFPQIIA---GINHK--TAYQRAMDLLSY 133
+R +I V+Q+ RL N++ QII ++ +A QR +++
Sbjct: 360 VR-HRIQVVFQDPNSSLNPRL--------NVL--QIIEEGLRVHQPTLSAAQREQQVIAV 408
Query: 134 MDM----SQYANRRSSDISGGEQQRVAICRAIANKPLIILADEPTGNLDLKTAQQVFSIL 189
M+ + +R ++ SGG++QR+AI RA+ KP +I+ DEPT +LD Q+ ++L
Sbjct: 409 MEEVGLDPETRHRYPAEFSGGQRQRIAIARALILKPSLIILDEPTSSLDKTVQAQILALL 468
Query: 190 KYLVVRSGLAALIATHN 206
K L + LA L +H+
Sbjct: 469 KSLQQKHQLAYLFISHD 485
>gnl|CDD|182716 PRK10771, thiQ, thiamine transporter ATP-binding subunit;
Provisional.
Length = 232
Score = 82.7 bits (205), Expect = 7e-17
Identities = 58/203 (28%), Positives = 102/203 (50%), Gaps = 19/203 (9%)
Query: 30 HLSLKKGEIVALVSPSGTGKSTILH-IAGLLEVPDQGNVIIANQLCNKLSDDKKSFLRCS 88
L++++GE VA++ PSG GKST+L+ IAG L P G++ + Q ++
Sbjct: 19 DLTVERGERVAILGPSGAGKSTLLNLIAGFLT-PASGSLTLNGQDHTTTPPSRRP----- 72
Query: 89 KIGFVYQEHRLLMDFSVIENIIFPQIIAGIN---HKTAYQRAM--DLLSYMDMSQYANRR 143
+ ++QE+ L +V +NI G+N A QR + M + R
Sbjct: 73 -VSMLFQENNLFSHLTVAQNIGL-----GLNPGLKLNAAQREKLHAIARQMGIEDLLARL 126
Query: 144 SSDISGGEQQRVAICRAIANKPLIILADEPTGNLDLKTAQQVFSILKYLVVRSGLAALIA 203
+SGG++QRVA+ R + + I+L DEP LD Q++ +++ + L L+
Sbjct: 127 PGQLSGGQRQRVALARCLVREQPILLLDEPFSALDPALRQEMLTLVSQVCQERQLTLLMV 186
Query: 204 THNHDLASQM-DRQITIRDGMIA 225
+H+ + A+++ R + + DG IA
Sbjct: 187 SHSLEDAARIAPRSLVVADGRIA 209
>gnl|CDD|183258 PRK11650, ugpC, glycerol-3-phosphate transporter ATP-binding
subunit; Provisional.
Length = 356
Score = 82.2 bits (204), Expect = 1e-16
Identities = 63/182 (34%), Positives = 94/182 (51%), Gaps = 25/182 (13%)
Query: 7 LLLQNVKHSYRQVGKPFPVLENVHLSLKKGEIVALVSPSGTGKSTILH-IAGLLEVPDQG 65
L LQ V+ SY GK V++ + L + GE + LV PSG GKST+L +AGL + G
Sbjct: 4 LKLQAVRKSYD--GK-TQVIKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLERITS-G 59
Query: 66 NVIIANQLCNKLS----DDKKSFLRCSKIGFVYQEHRLLMDFSVIENIIFPQIIAGINHK 121
+ I ++ N+L D I V+Q + L SV EN+ + I G+
Sbjct: 60 EIWIGGRVVNELEPADRD----------IAMVFQNYALYPHMSVRENMAYGLKIRGMPKA 109
Query: 122 TAYQR---AMDLLSYMDMSQYANRRSSDISGGEQQRVAICRAIANKPLIILADEPTGNLD 178
+R A +L ++ +R+ ++SGG++QRVA+ RAI +P + L DEP NLD
Sbjct: 110 EIEERVAEAARIL---ELEPLLDRKPRELSGGQRQRVAMGRAIVREPAVFLFDEPLSNLD 166
Query: 179 LK 180
K
Sbjct: 167 AK 168
>gnl|CDD|184192 PRK13632, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 271
Score = 81.6 bits (202), Expect = 1e-16
Identities = 69/224 (30%), Positives = 112/224 (50%), Gaps = 21/224 (9%)
Query: 9 LQNVKHSYRQVGKPFPVLENVHLSLKKGEIVALVSPSGTGKSTILHI-AGLLEVPDQGNV 67
++NV SY L+NV + +GE VA++ +G+GKSTI I GLL+ P G +
Sbjct: 10 VENVSFSYPNSENN--ALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLK-PQSGEI 66
Query: 68 IIANQLCNKLSDDKKSFLRCSKIGFVYQE-HRLLMDFSVIENIIFPQIIAGINHKTAYQR 126
I +S + +R KIG ++Q + +V ++I F G+ +K +
Sbjct: 67 KIDG---ITISKENLKEIR-KKIGIIFQNPDNQFIGATVEDDIAF-----GLENKKVPPK 117
Query: 127 AM-----DLLSYMDMSQYANRRSSDISGGEQQRVAICRAIANKPLIILADEPTGNLDLKT 181
M DL + M Y ++ ++SGG++QRVAI +A P II+ DE T LD K
Sbjct: 118 KMKDIIDDLAKKVGMEDYLDKEPQNLSGGQKQRVAIASVLALNPEIIIFDESTSMLDPKG 177
Query: 182 AQQVFSILKYLVVRSGLAALIA-THNHDLASQMDRQITIRDGMI 224
+++ I+ L ++ LI+ TH+ D A D+ I +G +
Sbjct: 178 KREIKKIMVDL-RKTRKKTLISITHDMDEAILADKVIVFSEGKL 220
>gnl|CDD|182342 PRK10261, PRK10261, glutathione transporter ATP-binding protein;
Provisional.
Length = 623
Score = 81.4 bits (201), Expect = 2e-16
Identities = 60/241 (24%), Positives = 123/241 (51%), Gaps = 21/241 (8%)
Query: 1 MDSAEVLLLQNVKHSYRQVGKPFPVLENVHLSLKKGEIVALVSPSGTGKS-TILHIAGLL 59
+D+ +VL ++N+ ++ Q + + N+ SL++GE +A+V SG+GKS T L + LL
Sbjct: 7 LDARDVLAVENLNIAFMQEQQKIAAVRNLSFSLQRGETLAIVGESGSGKSVTALALMRLL 66
Query: 60 EVPDQGNVIIANQL-----------CNKLSDDKKSFLRCSKIGFVYQEHRLLMD--FSVI 106
E G ++ +++ ++ S + +R + + ++QE ++ F+V
Sbjct: 67 E--QAGGLVQCDKMLLRRRSRQVIELSEQSAAQMRHVRGADMAMIFQEPMTSLNPVFTVG 124
Query: 107 ENIIFP-QIIAGINHKTAY---QRAMDLLSYMDMSQYANRRSSDISGGEQQRVAICRAIA 162
E I ++ G + + A +R +D + + +R +SGG +QRV I A++
Sbjct: 125 EQIAESIRLHQGASREEAMVEAKRMLDQVRIPEAQTILSRYPHQLSGGMRQRVMIAMALS 184
Query: 163 NKPLIILADEPTGNLDLKTAQQVFSILKYLVVRSGLAALIATHNHDLASQM-DRQITIRD 221
+P +++ADEPT LD+ Q+ ++K L + + TH+ + +++ DR + +
Sbjct: 185 CRPAVLIADEPTTALDVTIQAQILQLIKVLQKEMSMGVIFITHDMGVVAEIADRVLVMYQ 244
Query: 222 G 222
G
Sbjct: 245 G 245
Score = 73.7 bits (181), Expect = 4e-14
Identities = 65/186 (34%), Positives = 98/186 (52%), Gaps = 7/186 (3%)
Query: 26 LENVHLSLKKGEIVALVSPSGTGKSTILHIAGLLEVPDQGNVIIAN-QLCNKLSDDKKSF 84
+E V L GE ++LV SG+GKST A L V QG II N Q + LS K
Sbjct: 340 VEKVSFDLWPGETLSLVGESGSGKSTTGR-ALLRLVESQGGEIIFNGQRIDTLSPGKLQA 398
Query: 85 LRCSKIGFVYQEHRLLMD--FSVIENIIFPQIIAGINH-KTAYQRAMDLLSYMDM-SQYA 140
LR I F++Q+ +D +V ++I+ P + G+ K A R LL + + ++A
Sbjct: 399 LR-RDIQFIFQDPYASLDPRQTVGDSIMEPLRVHGLLPGKAAAARVAWLLERVGLLPEHA 457
Query: 141 NRRSSDISGGEQQRVAICRAIANKPLIILADEPTGNLDLKTAQQVFSILKYLVVRSGLAA 200
R + SGG++QR+ I RA+A P +I+ADE LD+ Q+ ++L L G+A
Sbjct: 458 WRYPHEFSGGQRQRICIARALALNPKVIIADEAVSALDVSIRGQIINLLLDLQRDFGIAY 517
Query: 201 LIATHN 206
L +H+
Sbjct: 518 LFISHD 523
>gnl|CDD|130355 TIGR01288, nodI, ATP-binding ABC transporter family nodulation
protein NodI. This model does not recognize the highly
divergent NodI from Azorhizobium caulinodans.
Length = 303
Score = 80.7 bits (199), Expect = 3e-16
Identities = 54/199 (27%), Positives = 99/199 (49%), Gaps = 7/199 (3%)
Query: 25 VLENVHLSLKKGEIVALVSPSGTGKSTILHIAGLLEVPDQGNVIIANQLCNKLSDDKKSF 84
V+ ++ ++ +GE L+ P+G GKSTI + + PD+G + + + ++
Sbjct: 19 VVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMISPDRGKITVLGE-----PVPSRAR 73
Query: 85 LRCSKIGFVYQEHRLLMDFSVIENIIFPQIIAGINHKTAYQRAMDLLSYMDMSQYANRRS 144
L IG V Q L +F+V EN++ G++ + LL + + A+ R
Sbjct: 74 LARVAIGVVPQFDNLDPEFTVRENLLVFGRYFGMSTREIEAVIPSLLEFARLESKADVRV 133
Query: 145 SDISGGEQQRVAICRAIANKPLIILADEPTGNLDLKTAQQVFSILKYLVVRSGLAALIAT 204
+ +SGG ++R+ + RA+ N P +++ DEPT LD ++ L+ L+ R G L+ T
Sbjct: 134 ALLSGGMKRRLTLARALINDPQLLILDEPTTGLDPHARHLIWERLRSLLAR-GKTILLTT 192
Query: 205 HNHDLASQM-DRQITIRDG 222
H + A ++ DR + G
Sbjct: 193 HFMEEAERLCDRLCVLESG 211
>gnl|CDD|172750 PRK14262, PRK14262, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 250
Score = 80.7 bits (199), Expect = 3e-16
Identities = 54/192 (28%), Positives = 94/192 (48%), Gaps = 15/192 (7%)
Query: 25 VLENVHLSLKKGEIVALVSPSGTGKSTILHIAGLL--EVPD---QGNVIIANQLCNKLSD 79
++NV + + K +I A++ PSG GK+T+L + +P +G + Q
Sbjct: 18 AVKNVTMKIFKNQITAIIGPSGCGKTTLLRSINRMNDHIPGFRVEGKIYFKGQDIYDPQL 77
Query: 80 DKKSFLRCSKIGFVYQEHRLLMDFSVIENIIFPQIIAGINHKTAYQRAMD-----LLSYM 134
D + + K+G V+Q+ S+ +N+ F I G+ K R ++ +
Sbjct: 78 DVTEYRK--KVGMVFQK-PTPFPMSIYDNVAFGPRIHGVKSKHKLDRIVEESLKKAALWD 134
Query: 135 DMSQYANRRSSDISGGEQQRVAICRAIANKPLIILADEPTGNLDLKTAQQVFSILKYLVV 194
++ N+ + +SGG+QQR+ I RA+A +P +IL DEPT LD Q++ +L+ L
Sbjct: 135 EVKSELNKPGTRLSGGQQQRLCIARALAVEPEVILLDEPTSALDPIATQRIEKLLEELSE 194
Query: 195 RSGLAALIATHN 206
+ I THN
Sbjct: 195 NYTIV--IVTHN 204
>gnl|CDD|184196 PRK13636, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 283
Score = 79.5 bits (196), Expect = 6e-16
Identities = 48/201 (23%), Positives = 104/201 (51%), Gaps = 8/201 (3%)
Query: 26 LENVHLSLKKGEIVALVSPSGTGKSTIL-HIAGLLEVPDQGNVIIANQLCNKLSDDKKSF 84
L+ +++++KKGE+ A++ +G GKST+ ++ G+L+ P G ++ + + +K
Sbjct: 22 LKGININIKKGEVTAILGGNGAGKSTLFQNLNGILK-PSSGRILFDGK---PIDYSRKGL 77
Query: 85 LRCSK-IGFVYQE-HRLLMDFSVIENIIFPQIIAGINHKTAYQRAMDLLSYMDMSQYANR 142
++ + +G V+Q+ L SV +++ F + + +R + L + ++
Sbjct: 78 MKLRESVGMVFQDPDNQLFSASVYQDVSFGAVNLKLPEDEVRKRVDNALKRTGIEHLKDK 137
Query: 143 RSSDISGGEQQRVAICRAIANKPLIILADEPTGNLDLKTAQQVFSILKYLVVRSGLAALI 202
+ +S G+++RVAI + +P +++ DEPT LD ++ +L + GL +I
Sbjct: 138 PTHCLSFGQKKRVAIAGVLVMEPKVLVLDEPTAGLDPMGVSEIMKLLVEMQKELGLTIII 197
Query: 203 ATHNHDL-ASQMDRQITIRDG 222
ATH+ D+ D +++G
Sbjct: 198 ATHDIDIVPLYCDNVFVMKEG 218
>gnl|CDD|163508 TIGR03796, NHPM_micro_ABC1, NHPM bacteriocin system ABC
transporter, peptidase/ATP-binding protein. This
protein describes an multidomain ABC transporter subunit
that is one of three protein families associated with
some regularity with a distinctive family of putative
bacteriocins. It includes a bacteriocin-processing
peptidase domain at the N-terminus. Model TIGR03793
describes a conserved propeptide region for this
bacteriocin family, unusual because it shows obvious
homology a region of the enzyme nitrile hydratase up to
the classic Gly-Gly cleavage motif. This family is
therefore predicted to be a subunit of a bacteriocin
processing and export system characteristic to this
system that we designate NHPM, Nitrile Hydratase
Propeptide Microcin.
Length = 710
Score = 78.8 bits (195), Expect = 1e-15
Identities = 62/219 (28%), Positives = 102/219 (46%), Gaps = 27/219 (12%)
Query: 9 LQNVKHSYRQVGKPFPVLENVHLSLKKGEIVALVSPSGTGKSTILH-IAGLLEVPDQGNV 67
L+N+ Y + P ++EN L+L+ G+ VALV SG+GKSTI +AGL + P G +
Sbjct: 480 LRNITFGYSPLEPP--LIENFSLTLQPGQRVALVGGSGSGKSTIAKLVAGLYQ-PWSGEI 536
Query: 68 IIANQLCNKLSDDKKSFLRCSKIGFVYQEHRLLMDFSVIENI-IFPQIIAGINHKTAYQR 126
+ + + L S + V Q+ L + +V +N+ ++ I + A +
Sbjct: 537 LFDGI---PREEIPREVLANS-VAMVDQD-IFLFEGTVRDNLTLWDPTIPDADLVRACKD 591
Query: 127 AMDLLSYMDMS-QYANRRS---SDISGGEQQRVAICRAIANKPLIILADEPTGNLDLKTA 182
A Y + +++SGG++QR+ I RA+ P I++ DE T LD +T
Sbjct: 592 AAIHDVITSRPGGYDAELAEGGANLSGGQRQRLEIARALVRNPSILILDEATSALDPETE 651
Query: 183 QQVFSILKYLVVRSGLAALIATHNHDLASQMDRQITIRD 221
+ + L+ R G +I H R TIRD
Sbjct: 652 KIIDDNLR----RRGCTCIIVAH---------RLSTIRD 677
>gnl|CDD|162243 TIGR01189, ccmA, heme ABC exporter, ATP-binding protein CcmA. This
model describes the cyt c biogenesis protein encoded by
ccmA in bacteria. An exception is, an arabidopsis
protein. Quite likely this is encoded by an organelle.
Bacterial c-type cytocromes are located on the
periplasmic side of the cytoplasmic membrane. Several
gene products encoded in a locus designated as 'ccm' are
implicated in the transport and assembly of the
functional cytochrome C. This cluster includes genes:
ccmA;B;C;D;E;F;G and H. The posttranslational pathway
includes the transport of heme moiety, the secretion of
the apoprotein and the covalent attachment of the heme
with the apoprotein. The proteins ccmA and B represent
an ABC transporter; ccmC and D participate in heme
transfer to ccmE, which function as a periplasmic heme
chaperone. The presence of ccmF, G and H is suggested to
be obligatory for the final functional assembly of
cytochrome c.
Length = 198
Score = 77.8 bits (192), Expect = 2e-15
Identities = 57/200 (28%), Positives = 96/200 (48%), Gaps = 19/200 (9%)
Query: 24 PVLENVHLSLKKGEIVALVSPSGTGKSTILHI-AGLLEVPDQGNVIIANQLCNKLSDDKK 82
+ E + +L GE + + P+G GK+T+L I AGLL PD G V + D+
Sbjct: 14 MLFEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGLLR-PDSGEVRWNGTALAEQRDEPH 72
Query: 83 SFLRCSKIGFVYQEHR--LLMDFSVIENIIFPQIIAGINHKTAYQRAMDLLSYMDMSQYA 140
+ +Y H L + S +EN+ F I H A + D L+ + ++ +
Sbjct: 73 RNI-------LYLGHLPGLKPELSALENLHFWAAI----HGGAQRTIEDALAAVGLTGFE 121
Query: 141 NRRSSDISGGEQQRVAICRA-IANKPLIILADEPTGNLDLKTAQQVFSILKYLVVRSGLA 199
+ ++ +S G+Q+R+A+ R ++ PL IL DEPT LD + +L+ + R G
Sbjct: 122 DLPAAQLSAGQQRRLALARLWLSRAPLWIL-DEPTTALDKAGVALLAGLLRAHLARGG-I 179
Query: 200 ALIATHNHDLASQMDRQITI 219
L+ TH DL R++ +
Sbjct: 180 VLLTTH-QDLGLVEARELRL 198
>gnl|CDD|172734 PRK14246, PRK14246, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 257
Score = 77.4 bits (190), Expect = 2e-15
Identities = 54/200 (27%), Positives = 107/200 (53%), Gaps = 17/200 (8%)
Query: 25 VLENVHLSLKKGEIVALVSPSGTGKSTILHIAG-LLEVPDQ-----GNVIIANQLCNKLS 78
+L+++ + + I ++ PSG+GKST+L + L+E+ D G V+ + ++
Sbjct: 25 ILKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLIEIYDSKIKVDGKVLYFGKDIFQID 84
Query: 79 DDKKSFLRCSKIGFVYQEHRLLMDFSVIENIIFPQIIAGINHKTAYQRAMD-----LLSY 133
K LR ++G V+Q+ S+ +NI +P GI K ++ ++ + +
Sbjct: 85 AIK---LR-KEVGMVFQQPNPFPHLSIYDNIAYPLKSHGIKEKREIKKIVEECLRKVGLW 140
Query: 134 MDMSQYANRRSSDISGGEQQRVAICRAIANKPLIILADEPTGNLDLKTAQQVFSILKYLV 193
++ N +S +SGG+QQR+ I RA+A KP ++L DEPT +D+ +Q + ++ L
Sbjct: 141 KEVYDRLNSPASQLSGGQQQRLTIARALALKPKVLLMDEPTSMIDIVNSQAIEKLITEL- 199
Query: 194 VRSGLAALIATHNHDLASQM 213
++ +A +I +HN +++
Sbjct: 200 -KNEIAIVIVSHNPQQVARV 218
>gnl|CDD|184202 PRK13642, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 277
Score = 77.4 bits (190), Expect = 3e-15
Identities = 63/201 (31%), Positives = 103/201 (51%), Gaps = 7/201 (3%)
Query: 26 LENVHLSLKKGEIVALVSPSGTGKSTILH-IAGLLEVPDQGNVIIANQLCNKLSDDKKSF 84
L V S+ KGE V+++ +G+GKST I GL E +G V I + L+ +
Sbjct: 23 LNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFE-EFEGKVKIDGE---LLTAENVWN 78
Query: 85 LRCSKIGFVYQE-HRLLMDFSVIENIIFPQIIAGINHKTAYQRAMDLLSYMDMSQYANRR 143
LR KIG V+Q + +V +++ F GI + +R + L ++M + R
Sbjct: 79 LR-RKIGMVFQNPDNQFVGATVEDDVAFGMENQGIPREEMIKRVDEALLAVNMLDFKTRE 137
Query: 144 SSDISGGEQQRVAICRAIANKPLIILADEPTGNLDLKTAQQVFSILKYLVVRSGLAALIA 203
+ +SGG++QRVA+ IA +P II+ DE T LD Q++ ++ + + L L
Sbjct: 138 PARLSGGQKQRVAVAGIIALRPEIIILDESTSMLDPTGRQEIMRVIHEIKEKYQLTVLSI 197
Query: 204 THNHDLASQMDRQITIRDGMI 224
TH+ D A+ DR + ++ G I
Sbjct: 198 THDLDEAASSDRILVMKAGEI 218
>gnl|CDD|184586 PRK14240, PRK14240, phosphate transporter ATP-binding protein;
Provisional.
Length = 250
Score = 77.4 bits (191), Expect = 3e-15
Identities = 60/210 (28%), Positives = 101/210 (48%), Gaps = 33/210 (15%)
Query: 23 FPVLENVHLSLKKGEIVALVSPSGTGKSTILHIAGLLE--VPD---QGNVIIANQLCNKL 77
F L+ ++L +++ ++ AL+ PSG GKST L + +P +G V++ Q K
Sbjct: 16 FQALKKINLDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIPSVKIEGEVLLDGQDIYKS 75
Query: 78 SDDKKSFLRCSKIGFVYQEHRLLMDFSVIENIIFPQIIAGINHKTAYQRAMDLLSYMDMS 137
D LR ++G V+Q+ S+ +N+ + GI K + +D + +
Sbjct: 76 DIDVNQ-LR-KRVGMVFQQPNPF-PMSIYDNVAYGPRTHGIKDK----KKLDEIVEKSLK 128
Query: 138 QYA---------NRRSSDISGGEQQRVAICRAIANKPLIILADEPTGNLD----LKTAQQ 184
A + + +SGG+QQR+ I RA+A +P ++L DEPT LD LK +
Sbjct: 129 GAALWDEVKDRLKKSALGLSGGQQQRLCIARALAVEPEVLLMDEPTSALDPISTLKIEEL 188
Query: 185 VFSILK-YLVVRSGLAALIATHNHDLASQM 213
+ + K Y +V I THN AS++
Sbjct: 189 IQELKKDYTIV-------IVTHNMQQASRI 211
>gnl|CDD|182993 PRK11144, modC, molybdate transporter ATP-binding protein;
Provisional.
Length = 352
Score = 76.8 bits (190), Expect = 4e-15
Identities = 47/155 (30%), Positives = 81/155 (52%), Gaps = 12/155 (7%)
Query: 28 NVHLSLKKGEIVALVSPSGTGKSTILHIAGLLEVPDQGNVIIANQLCNKLSD-DKKSFLR 86
V+L+L I A+ SG GK+++++ L P +G +++ ++ L D +K L
Sbjct: 16 TVNLTLPAQGITAIFGRSGAGKTSLINAISGLTRPQKGRIVLNGRV---LFDAEKGICLP 72
Query: 87 CSK--IGFVYQEHRLLMDFSVIENIIFPQIIAGINHKTAYQRAMDLLSYMDMSQYANRRS 144
K IG+V+Q+ RL + V N+ + G+ Q +++ + + +R
Sbjct: 73 PEKRRIGYVFQDARLFPHYKVRGNLRY-----GMAKSMVAQFD-KIVALLGIEPLLDRYP 126
Query: 145 SDISGGEQQRVAICRAIANKPLIILADEPTGNLDL 179
+SGGE+QRVAI RA+ P ++L DEP +LDL
Sbjct: 127 GSLSGGEKQRVAIGRALLTAPELLLMDEPLASLDL 161
>gnl|CDD|172761 PRK14273, PRK14273, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 254
Score = 76.6 bits (188), Expect = 5e-15
Identities = 64/219 (29%), Positives = 106/219 (48%), Gaps = 24/219 (10%)
Query: 23 FPVLENVHLSLKKGEIVALVSPSGTGKSTILH----IAGLLE-VPDQGNVIIANQLCNKL 77
F L N+++ + K I AL+ PSG GKST L + L+E + +GNVI + N
Sbjct: 20 FKALNNINIKILKNSITALIGPSGCGKSTFLRTLNRMNDLVEGIKIEGNVIYEGK--NIY 77
Query: 78 SDDKKSFLRCSKIGFVYQEHRLLMDFSVIENIIFPQIIAGINHKTAYQRAMDLLSYMDMS 137
S++ KIG V+Q + S+ +NI + I G K + +D + +
Sbjct: 78 SNNFDILELRRKIGMVFQTPNPFL-MSIYDNISYGPKIHGTKDK----KKLDEIVEQSLK 132
Query: 138 QYA---------NRRSSDISGGEQQRVAICRAIANKPLIILADEPTGNLDLKTAQQVFSI 188
+ A N + +SGG+QQR+ I R +A +P +IL DEPT LD + ++ +
Sbjct: 133 KSALWNEVKDKLNTNALSLSGGQQQRLCIARTLAIEPNVILMDEPTSALDPISTGKIEEL 192
Query: 189 LKYLVVRSGLAALIATHNHDLASQM-DRQITIRDGMIAD 226
+ + ++ +I THN A ++ DR +G I +
Sbjct: 193 I--INLKESYTIIIVTHNMQQAGRISDRTAFFLNGCIEE 229
>gnl|CDD|184207 PRK13648, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 269
Score = 76.7 bits (189), Expect = 5e-15
Identities = 61/232 (26%), Positives = 112/232 (48%), Gaps = 21/232 (9%)
Query: 1 MDSAEVLLLQNVKHSYRQVGKPFPVLENVHLSLKKGEIVALVSPSGTGKSTILHIAGLLE 60
D +++ +NV Y Q F L++V ++ KG+ ++V +G+GKSTI + +E
Sbjct: 2 EDKNSIIVFKNVSFQY-QSDASF-TLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIE 59
Query: 61 VPDQGNVIIANQLCNKLSDDKKSFLRCSKIGFVYQ--EHRL---LMDFSV---IENIIFP 112
G + NQ ++DD LR IG V+Q +++ ++ + V +EN P
Sbjct: 60 KVKSGEIFYNNQA---ITDDNFEKLR-KHIGIVFQNPDNQFVGSIVKYDVAFGLENHAVP 115
Query: 113 QIIAGINHKTAYQRAMDLLSYMDMSQYANRRSSDISGGEQQRVAICRAIANKPLIILADE 172
+ ++R + L +DM + A+ + +SGG++QRVAI +A P +I+ DE
Sbjct: 116 -------YDEMHRRVSEALKQVDMLERADYEPNALSGGQKQRVAIAGVLALNPSVIILDE 168
Query: 173 PTGNLDLKTAQQVFSILKYLVVRSGLAALIATHNHDLASQMDRQITIRDGMI 224
T LD Q + +++ + + + TH+ A + D I + G +
Sbjct: 169 ATSMLDPDARQNLLDLVRKVKSEHNITIISITHDLSEAMEADHVIVMNKGTV 220
>gnl|CDD|131258 TIGR02203, MsbA_lipidA, lipid A export permease/ATP-binding protein
MsbA. This family consists of a single polypeptide
chain transporter in the ATP-binding cassette (ABC)
transporter family, MsbA, which exports lipid A. It may
also act in multidrug resistance. Lipid A, a part of
lipopolysaccharide, is found in the outer leaflet of the
outer membrane of most Gram-negative bacteria. Members
of this family are restricted to the Proteobacteria
(although lipid A is more broadly distributed) and often
are clustered with lipid A biosynthesis genes.
Length = 571
Score = 76.3 bits (188), Expect = 6e-15
Identities = 64/222 (28%), Positives = 111/222 (50%), Gaps = 17/222 (7%)
Query: 10 QNVKHSYRQVGKPFPVLENVHLSLKKGEIVALVSPSGTGKSTILHIAGLLEVPDQGNVII 69
+NV Y G+ P L+++ L ++ GE VALV SG+GKST++++ PD G +++
Sbjct: 334 RNVTFRYP--GRDRPALDSISLVIEPGETVALVGRSGSGKSTLVNLIPRFYEPDSGQILL 391
Query: 70 ANQLCNKLSDDKKSFLRCSKIGFVYQEHRLLMDFSVIENIIFPQII----AGINHKTAYQ 125
+ L+D + LR ++ V Q +L + ++ NI + + A I A
Sbjct: 392 DG---HDLADYTLASLR-RQVALVSQ-DVVLFNDTIANNIAYGRTEQADRAEIERALAAA 446
Query: 126 RAMDLLSYMD--MSQYANRRSSDISGGEQQRVAICRAI-ANKPLIILADEPTGNLDLKTA 182
A D + + + +SGG++QR+AI RA+ + P++IL DE T LD ++
Sbjct: 447 YAQDFVDKLPLGLDTPIGENGVLLSGGQRQRLAIARALLKDAPILIL-DEATSALDNESE 505
Query: 183 QQVFSILKYLVVRSGLAALIATHNHDLASQMDRQITIRDGMI 224
+ V + L+ L+ G L+ H + DR + + DG I
Sbjct: 506 RLVQAALERLM--QGRTTLVIAHRLSTIEKADRIVVMDDGRI 545
>gnl|CDD|172739 PRK14251, PRK14251, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 251
Score = 75.8 bits (186), Expect = 7e-15
Identities = 57/203 (28%), Positives = 98/203 (48%), Gaps = 13/203 (6%)
Query: 23 FPVLENVHLSLKKGEIVALVSPSGTGKSTILHIAGLLEVPDQGNVIIANQL---CNKLSD 79
+ L + L ++ E+ AL+ PSG GKST L + D N+ I ++ +
Sbjct: 17 YEALHGISLDFEEKELTALIGPSGCGKSTFLRCLNRMN-DDIENIKITGEIKFEGQNIYG 75
Query: 80 DKKSFLRCSK-IGFVYQEHRLLMDFSVIENIIFPQIIAGINHKTAY-QRAMDLLS----Y 133
K + K +G V+Q+ FSV +N+ + IAG+ K QR + L +
Sbjct: 76 SKMDLVELRKEVGMVFQQPTPF-PFSVYDNVAYGLKIAGVKDKELIDQRVEESLKQAAIW 134
Query: 134 MDMSQYANRRSSDISGGEQQRVAICRAIANKPLIILADEPTGNLDLKTAQQVFSILKYLV 193
+ +R + SGG+QQR+ I RA+A +P ++L DEPT LD ++ ++ L +
Sbjct: 135 KETKDNLDRNAQAFSGGQQQRICIARALAVRPKVVLLDEPTSALDPISSSEIEETL--ME 192
Query: 194 VRSGLAALIATHNHDLASQMDRQ 216
++ ++ THN A ++ Q
Sbjct: 193 LKHQYTFIMVTHNLQQAGRISDQ 215
>gnl|CDD|185016 PRK15056, PRK15056, manganese/iron transporter ATP-binding protein;
Provisional.
Length = 272
Score = 75.7 bits (186), Expect = 9e-15
Identities = 53/191 (27%), Positives = 98/191 (51%), Gaps = 22/191 (11%)
Query: 26 LENVHLSLKKGEIVALVSPSGTGKSTILH-IAGLLEVPDQGNVIIANQLCNKLSDDKKSF 84
L + ++ G I ALV +G+GKST+ + G + + G + I Q +
Sbjct: 23 LRDASFTVPGGSIAALVGVNGSGKSTLFKALMGFVRLA-SGKISILGQPTRQA------- 74
Query: 85 LRCSKIGFVYQEHRLLMDFSV-IENIIFPQIIAGINHKTAYQRAM--------DLLSYMD 135
L+ + + +V Q + F V +E+++ ++ H +RA L+ +D
Sbjct: 75 LQKNLVAYVPQSEEVDWSFPVLVEDVV---MMGRYGHMGWLRRAKKRDRQIVTAALARVD 131
Query: 136 MSQYANRRSSDISGGEQQRVAICRAIANKPLIILADEPTGNLDLKTAQQVFSILKYLVVR 195
M ++ +R+ ++SGG+++RV + RAIA + +IL DEP +D+KT ++ S+L+ L
Sbjct: 132 MVEFRHRQIGELSGGQKKRVFLARAIAQQGQVILLDEPFTGVDVKTEARIISLLREL-RD 190
Query: 196 SGLAALIATHN 206
G L++THN
Sbjct: 191 EGKTMLVSTHN 201
>gnl|CDD|172747 PRK14259, PRK14259, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 269
Score = 75.6 bits (186), Expect = 1e-14
Identities = 68/216 (31%), Positives = 96/216 (44%), Gaps = 37/216 (17%)
Query: 9 LQNVKHSYRQVGKPFPVLENVHLSLKKGEIVALVSPSGTGKSTILH----IAGLLE-VPD 63
LQNV SY F ++NV + +G++ AL+ PSG GKST+L + L+E
Sbjct: 16 LQNVTISYGT----FEAVKNVFCDIPRGKVTALIGPSGCGKSTVLRSLNRMNDLIEGCSL 71
Query: 64 QGNVIIANQLCNKLSDDKKSFLRCSKIGFVYQEHRLLMDFSVIENIIFPQIIAGINHKTA 123
+G V+ D R +IG V+Q+ S+ ENI F I G
Sbjct: 72 KGRVLFDGTDLYDPRVDPVEVRR--RIGMVFQQPNPFPK-SIYENIAFGARING------ 122
Query: 124 YQRAMDLLSYMDMSQYA---------NRRSSDISGGEQQRVAICRAIANKPLIILADEPT 174
Y MD L + + A N +SGG+QQR+ I R IA +P +IL DEP
Sbjct: 123 YTGDMDELVERSLRKAAVWDECKDKLNESGYSLSGGQQQRLCIARTIAIEPEVILMDEPC 182
Query: 175 GNLD----LKTAQQVFSILKYLVVRSGLAALIATHN 206
LD LK + + + K + +I THN
Sbjct: 183 SALDPISTLKIEETMHELKKNFTI------VIVTHN 212
>gnl|CDD|162555 TIGR01842, type_I_sec_PrtD, type I secretion system ABC
transporter, PrtD family. Type I protein secretion is a
system in some Gram-negative bacteria to export proteins
(often proteases) across both inner and outer membranes
to the extracellular medium. This is one of three
proteins of the type I secretion apparatus. Targeted
proteins are not cleaved at the N-terminus, but rather
carry signals located toward the extreme C-terminus to
direct type I secretion.
Length = 544
Score = 75.5 bits (186), Expect = 1e-14
Identities = 64/228 (28%), Positives = 111/228 (48%), Gaps = 17/228 (7%)
Query: 6 VLLLQNVKHSYRQVGKPFPVLENVHLSLKKGEIVALVSPSGTGKSTILHIAGLLEVPDQG 65
L ++NV + G P L + L+ GE +A++ PSG+GKST+ + + P G
Sbjct: 316 HLSVENV--TIVPPGGKKPTLRGISFRLQAGEALAIIGPSGSGKSTLARLIVGIWPPTSG 373
Query: 66 NVIIANQLCNKLSDDKKSFLRCSKIGFVYQEHRLLMDFSVIENII-F------PQIIAGI 118
+V + + D+++F + IG++ Q+ L +V ENI F +II
Sbjct: 374 SVRLDGADLKQW--DRETFGK--HIGYLPQDVEL-FPGTVAENIARFGENADPEKIIEAA 428
Query: 119 NHKTAYQRAMDLLSYMDMSQYANRRSSDISGGEQQRVAICRAIANKPLIILADEPTGNLD 178
K A + L + +SGG++QR+A+ RA+ P +++ DEP NLD
Sbjct: 429 --KLAGVHELILRLPDGYDTVIGPGGATLSGGQRQRIALARALYGDPKLVVLDEPNSNLD 486
Query: 179 LKTAQQVFSILKYLVVRSGLAALIATHNHDLASQMDRQITIRDGMIAD 226
+ Q + + +K L R G+ ++ TH L +D+ + ++DG IA
Sbjct: 487 EEGEQALANAIKALKAR-GITVVVITHRPSLLGCVDKILVLQDGRIAR 533
>gnl|CDD|139715 PRK13631, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 320
Score = 75.3 bits (185), Expect = 1e-14
Identities = 56/237 (23%), Positives = 111/237 (46%), Gaps = 26/237 (10%)
Query: 5 EVLLLQNVKHSY-RQVGKPFPVLENVHLSLKKGEIVALVSPSGTGKSTIL-HIAGLLEVP 62
+L ++N+ + + L N+ + +K +I ++ SG+GKST++ H GL++
Sbjct: 20 IILRVKNLYCVFDEKQENELVALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLIK-S 78
Query: 63 DQGNVIIAN-----------QLCNKLSDDKKSFLRCSK-IGFVYQ--EHRLLMDFSVIEN 108
G + + + + N S K+F + + V+Q E++L D ++ ++
Sbjct: 79 KYGTIQVGDIYIGDKKNNHELITNPYSKKIKNFKELRRRVSMVFQFPEYQLFKD-TIEKD 137
Query: 109 IIFPQIIAGINHKTAYQRAMDLLSYMDM-SQYANRRSSDISGGEQQRVAICRAIANKPLI 167
I+F + G+ A + A L+ M + Y R +SGG+++RVAI +A +P I
Sbjct: 138 IMFGPVALGVKKSEAKKLAKFYLNKMGLDDSYLERSPFGLSGGQKRRVAIAGILAIQPEI 197
Query: 168 ILADEPTGNLDLKTAQQVFSILKYLVVRSGLAALIATHNHDLASQMDRQITIRDGMI 224
++ DEPT LD K ++ ++ + + TH M+ + + D +I
Sbjct: 198 LIFDEPTAGLDPKGEHEMMQLILD-AKANNKTVFVITH------TMEHVLEVADEVI 247
>gnl|CDD|184585 PRK14239, PRK14239, phosphate transporter ATP-binding protein;
Provisional.
Length = 252
Score = 75.2 bits (185), Expect = 1e-14
Identities = 62/201 (30%), Positives = 98/201 (48%), Gaps = 16/201 (7%)
Query: 26 LENVHLSLKKGEIVALVSPSGTGKSTILHIAGLL-----EVPDQGNVIIANQLCNKLSDD 80
L +V L EI AL+ PSG+GKST+L + EV G+++ N S
Sbjct: 21 LNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDLNPEVTITGSIVYNGH--NIYSPR 78
Query: 81 KKSFLRCSKIGFVYQEHRLLMDFSVIENIIFPQIIAGINHKT----AYQRAMDLLSYMD- 135
+ +IG V+Q+ S+ EN+++ + GI K A ++++ S D
Sbjct: 79 TDTVDLRKEIGMVFQQPNPF-PMSIYENVVYGLRLKGIKDKQVLDEAVEKSLKGASIWDE 137
Query: 136 MSQYANRRSSDISGGEQQRVAICRAIANKPLIILADEPTGNLDLKTAQQVFSILKYLVVR 195
+ + + +SGG+QQRV I R +A P IIL DEPT LD +A ++ L L ++
Sbjct: 138 VKDRLHDSALGLSGGQQQRVCIARVLATSPKIILLDEPTSALDPISAGKIEETL--LGLK 195
Query: 196 SGLAALIATHNHDLASQM-DR 215
L+ T + AS++ DR
Sbjct: 196 DDYTMLLVTRSMQQASRISDR 216
>gnl|CDD|131259 TIGR02204, MsbA_rel, ABC transporter, permease/ATP-binding protein.
This protein is related to a Proteobacterial ATP
transporter that exports lipid A and to eukaryotic
P-glycoproteins.
Length = 576
Score = 75.1 bits (185), Expect = 1e-14
Identities = 64/213 (30%), Positives = 98/213 (46%), Gaps = 22/213 (10%)
Query: 24 PVLENVHLSLKKGEIVALVSPSGTGKSTILHIAGLLEVPDQGNVIIANQLCNKLSDDKKS 83
P L+ ++L+++ GE VALV PSG GKST+ + P G +++ L +
Sbjct: 354 PALDGLNLTVRPGETVALVGPSGAGKSTLFQLLLRFYDPQSGRILLDGV---DLRQLDPA 410
Query: 84 FLRCSKIGFVYQEHRLLMDFSVIENIIFPQIIAGINHKTAYQ--------RAMDLLSYMD 135
LR +++ V Q+ L SV+ENI + G T + A + +S +
Sbjct: 411 ELR-ARMALVPQDPVLFAA-SVMENIRY-----GRPDATDEEVEAAARAAHAHEFISALP 463
Query: 136 --MSQYANRRSSDISGGEQQRVAICRAIANKPLIILADEPTGNLDLKTAQQVFSILKYLV 193
Y R +SGG++QR+AI RAI I+L DE T LD ++ Q V L+ L+
Sbjct: 464 EGYDTYLGERGVTLSGGQRQRIAIARAILKDAPILLLDEATSALDAESEQLVQQALETLM 523
Query: 194 VRSGLAALIATHNHDLASQMDRQITIRDGMIAD 226
G LI H + DR + + G I
Sbjct: 524 --KGRTTLIIAHRLATVLKADRIVVMDQGRIVA 554
>gnl|CDD|183003 PRK11160, PRK11160, cysteine/glutathione ABC transporter
membrane/ATP-binding component; Reviewed.
Length = 574
Score = 74.9 bits (185), Expect = 1e-14
Identities = 69/229 (30%), Positives = 108/229 (47%), Gaps = 27/229 (11%)
Query: 7 LLLQNVKHSYRQVGKPFPVLENVHLSLKKGEIVALVSPSGTGKSTILHIAGLLE---VPD 63
L L NV +Y +P PVL+ + L +K GE VAL+ +G GKST+L LL P
Sbjct: 339 LTLNNVSFTYPD--QPQPVLKGLSLQIKAGEKVALLGRTGCGKSTLLQ---LLTRAWDPQ 393
Query: 64 QGNVIIANQLCNKLSDDKKSFLRCSKIGFVYQEHRLLMDFSVIENIIFPQIIAGINHKTA 123
QG +++ Q ++D ++ LR I V Q L ++ +N++ A
Sbjct: 394 QGEILLNGQ---PIADYSEAALR-QAISVVSQRVHLFSA-TLRDNLLLAAPNASDEALIE 448
Query: 124 YQRAMDLLSYMDMSQYAN-------RRSSDISGGEQQRVAICRAI-ANKPLIILADEPTG 175
+ + L ++ + N R+ S GGEQ+R+ I RA+ + PL++L DEPT
Sbjct: 449 VLQQVGLEKLLEDDKGLNAWLGEGGRQLS---GGEQRRLGIARALLHDAPLLLL-DEPTE 504
Query: 176 NLDLKTAQQVFSILKYLVVRSGLAALIATHNHDLASQMDRQITIRDGMI 224
LD +T +Q+ +L L+ TH Q DR + +G I
Sbjct: 505 GLDAETERQILELL--AEHAQNKTVLMITHRLTGLEQFDRICVMDNGQI 551
>gnl|CDD|182036 PRK09700, PRK09700, D-allose transporter ATP-binding protein;
Provisional.
Length = 510
Score = 74.8 bits (184), Expect = 2e-14
Identities = 50/184 (27%), Positives = 93/184 (50%), Gaps = 13/184 (7%)
Query: 19 VGKPFPV---LENVHLSLKKGEIVALVSPSGTGKSTILHIAGLLEVPDQGNVIIANQLCN 75
+GK F L++V+L++ GEI AL+ +G GKST++ + + P +G + I N N
Sbjct: 11 IGKSFGPVHALKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHEPTKGTITINNINYN 70
Query: 76 KLSDDKKSFLRCSKIGFVYQEHRLLMDFSVIENIIFPQI----IAGIN---HKTAYQRAM 128
KL + L IG +YQE ++ + +V+EN+ + + G+N + RA
Sbjct: 71 KLDHKLAAQL---GIGIIYQELSVIDELTVLENLYIGRHLTKKVCGVNIIDWREMRVRAA 127
Query: 129 DLLSYMDMSQYANRRSSDISGGEQQRVAICRAIANKPLIILADEPTGNLDLKTAQQVFSI 188
+L + + + + +++S +Q + I + + +I+ DEPT +L K +F I
Sbjct: 128 MMLLRVGLKVDLDEKVANLSISHKQMLEIAKTLMLDAKVIIMDEPTSSLTNKEVDYLFLI 187
Query: 189 LKYL 192
+ L
Sbjct: 188 MNQL 191
Score = 49.0 bits (117), Expect = 1e-06
Identities = 43/220 (19%), Positives = 98/220 (44%), Gaps = 30/220 (13%)
Query: 28 NVHLSLKKGEIVALVSPSGTGKSTILHIAGLLEVPDQGNVIIANQLCNKLSDDKKSFLRC 87
++ S+ +GEI+ G+G++ +++ ++ G + + N +S L
Sbjct: 281 DISFSVCRGEILGFAGLVGSGRTELMNCLFGVDKRAGGEIRL-----NGKDISPRSPLDA 335
Query: 88 SKIGFVY-----QEHRLLMDFSVIENI-IFPQIIAGINHKTAYQRAMDLLSYMDMSQYA- 140
K G Y +++ +FS+ +N+ I + G Y+ AM L +D + A
Sbjct: 336 VKKGMAYITESRRDNGFFPNFSIAQNMAISRSLKDG-----GYKGAMGLFHEVDEQRTAE 390
Query: 141 -------------NRRSSDISGGEQQRVAICRAIANKPLIILADEPTGNLDLKTAQQVFS 187
N+ +++SGG QQ+V I + + P +I+ DEPT +D+ +++
Sbjct: 391 NQRELLALKCHSVNQNITELSGGNQQKVLISKWLCCCPEVIIFDEPTRGIDVGAKAEIYK 450
Query: 188 ILKYLVVRSGLAALIATHNHDLASQMDRQITIRDGMIADL 227
+++ L + ++++ ++ + DR +G + +
Sbjct: 451 VMRQLADDGKVILMVSSELPEIITVCDRIAVFCEGRLTQI 490
>gnl|CDD|185336 PRK15439, PRK15439, autoinducer 2 ABC transporter ATP-binding
protein LsrA; Provisional.
Length = 510
Score = 74.3 bits (183), Expect = 2e-14
Identities = 60/214 (28%), Positives = 104/214 (48%), Gaps = 14/214 (6%)
Query: 17 RQVGKPF---PVLENVHLSLKKGEIVALVSPSGTGKSTILHIAGLLEVPDQGNVIIANQL 73
R + K + VL+ + +L GE+ AL+ +G GKST++ I + PD G + I
Sbjct: 15 RSISKQYSGVEVLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVPPDSGTLEIGGNP 74
Query: 74 CNKLSDDKKSFLRCSKIGFVYQEHRLLMDFSVIENIIFPQIIAGI-NHKTAYQRAMDLLS 132
C +L+ K L I V QE L + SV ENI+F G+ + + Q+ LL+
Sbjct: 75 CARLTPAKAHQL---GIYLVPQEPLLFPNLSVKENILF-----GLPKRQASMQKMKQLLA 126
Query: 133 YMDMSQYANRRSSDISGGEQQRVAICRAIANKPLIILADEPTGNLDLKTAQQVFSILKYL 192
+ + + + ++Q V I R + I++ DEPT +L +++FS ++ L
Sbjct: 127 ALGCQLDLDSSAGSLEVADRQIVEILRGLMRDSRILILDEPTASLTPAETERLFSRIREL 186
Query: 193 VVRSGLAALIATHN-HDLASQMDRQITIRDGMIA 225
+ + G+ + +H ++ DR +RDG IA
Sbjct: 187 LAQ-GVGIVFISHKLPEIRQLADRISVMRDGTIA 219
Score = 44.7 bits (106), Expect = 2e-05
Identities = 48/217 (22%), Positives = 92/217 (42%), Gaps = 30/217 (13%)
Query: 28 NVHLSLKKGEIVALVSPSGTGKSTILHIAGLLEVPDQGNVIIANQLCNKLSDDKKSFLRC 87
N+ L ++ GEI+ L G G++ + L G +++ + N LS +
Sbjct: 281 NISLEVRAGEILGLAGVVGAGRTELAETLYGLRPARGGRIMLNGKEINALST-----AQR 335
Query: 88 SKIGFVY-----QEHRLLMDFSVIENI-----------IFPQIIAGINHKTAYQRAMDLL 131
G VY Q L +D + N+ I P + + Y+RA++ +
Sbjct: 336 LARGLVYLPEDRQSSGLYLDAPLAWNVCALTHNRRGFWIKPARENAVLER--YRRALN-I 392
Query: 132 SYMDMSQYANRRSSDISGGEQQRVAICRAIANKPLIILADEPTGNLDLKTAQQVFSILKY 191
+ Q A +SGG QQ+V I + + P +++ DEPT +D+ ++ +++
Sbjct: 393 KFNHAEQAART----LSGGNQQKVLIAKCLEASPQLLIVDEPTRGVDVSARNDIYQLIRS 448
Query: 192 LVVRSGLAALIATHNHDLASQM-DRQITIRDGMIADL 227
+ +A L + + + QM DR + + G I+
Sbjct: 449 -IAAQNVAVLFISSDLEEIEQMADRVLVMHQGEISGA 484
>gnl|CDD|182692 PRK10744, pstB, phosphate transporter ATP-binding protein;
Provisional.
Length = 260
Score = 74.3 bits (183), Expect = 2e-14
Identities = 63/212 (29%), Positives = 104/212 (49%), Gaps = 51/212 (24%)
Query: 23 FPVLENVHLSLKKGEIVALVSPSGTGKSTILHIAGLLE--VPDQ---GNVIIANQLCNKL 77
F L+N++L + K ++ A + PSG GKST+L + P+Q G +++ + N L
Sbjct: 26 FHALKNINLDIAKNQVTAFIGPSGCGKSTLLRTFNRMYELYPEQRAEGEILLDGE--NIL 83
Query: 78 SDDKK-SFLRCSKIGFVYQEHRLLMDF--SVIENIIFPQIIAGINHKTAYQRA-MDLLSY 133
+ + + LR +K+G V+Q+ F S+ +NI F G+ RA MD
Sbjct: 84 TPKQDIALLR-AKVGMVFQKP---TPFPMSIYDNIAF-----GVRLFEKLSRAEMD---- 130
Query: 134 MDMSQYANRRSS--------------DISGGEQQRVAICRAIANKPLIILADEPTGNLD- 178
+ ++A +++ +SGG+QQR+ I R IA +P ++L DEP LD
Sbjct: 131 -ERVEWALTKAALWNEVKDKLHQSGYSLSGGQQQRLCIARGIAIRPEVLLLDEPCSALDP 189
Query: 179 LKTA--QQVFSILK--YLVVRSGLAALIATHN 206
+ T +++ + LK Y VV I THN
Sbjct: 190 ISTGRIEELITELKQDYTVV-------IVTHN 214
>gnl|CDD|183014 PRK11174, PRK11174, cysteine/glutathione ABC transporter
membrane/ATP-binding component; Reviewed.
Length = 588
Score = 74.1 bits (183), Expect = 3e-14
Identities = 52/213 (24%), Positives = 100/213 (46%), Gaps = 27/213 (12%)
Query: 24 PVLENVHLSLKKGEIVALVSPSGTGKSTILH-IAGLLEVPDQGNVIIANQLCNKLSDDKK 82
+ ++ +L G+ +ALV PSG GK+++L+ + G L P QG++ I +L D +
Sbjct: 364 TLAGPLNFTLPAGQRIALVGPSGAGKTSLLNALLGFL--PYQGSLKINGIELREL--DPE 419
Query: 83 SFLRCSKIGFVYQEHRLLMDFSVIENIIFPQIIAGINHKTAYQRAMDLLSYMDMSQYANR 142
S+ + + +V Q +L ++ +N++ A ++ L +S++
Sbjct: 420 SWRK--HLSWVGQNPQLPHG-TLRDNVLLGNPDASD------EQLQQALENAWVSEFLPL 470
Query: 143 -----------RSSDISGGEQQRVAICRAIANKPLIILADEPTGNLDLKTAQQVFSILKY 191
+++ +S G+ QR+A+ RA+ ++L DEPT +LD + Q V L
Sbjct: 471 LPQGLDTPIGDQAAGLSVGQAQRLALARALLQPCQLLLLDEPTASLDAHSEQLVMQALN- 529
Query: 192 LVVRSGLAALIATHNHDLASQMDRQITIRDGMI 224
L+ TH + +Q D+ ++DG I
Sbjct: 530 -AASRRQTTLMVTHQLEDLAQWDQIWVMQDGQI 561
>gnl|CDD|183331 PRK11831, PRK11831, putative ABC transporter ATP-binding protein
YrbF; Provisional.
Length = 269
Score = 73.6 bits (181), Expect = 4e-14
Identities = 46/155 (29%), Positives = 83/155 (53%), Gaps = 10/155 (6%)
Query: 24 PVLENVHLSLKKGEIVALVSPSGTGKSTILHIAGLLEVPDQGNVIIANQLCNKLSDDKKS 83
+ +N+ L++ +G+I A++ PSG GK+T+L + G PD G ++ + +S +
Sbjct: 21 CIFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIAPDHGEILFDGENIPAMSRSRLY 80
Query: 84 FLRCSKIGFVYQEHRLLMDFSVIENIIFP-----QIIAGINHKTAYQRAMDLLSYMDMSQ 138
+R ++ ++Q L D +V +N+ +P Q+ A + H T M L + +
Sbjct: 81 TVR-KRMSMLFQSGALFTDMNVFDNVAYPLREHTQLPAPLLHST----VMMKLEAVGLRG 135
Query: 139 YANRRSSDISGGEQQRVAICRAIANKPLIILADEP 173
A S++SGG +R A+ RAIA +P +I+ DEP
Sbjct: 136 AAKLMPSELSGGMARRAALARAIALEPDLIMFDEP 170
>gnl|CDD|184588 PRK14243, PRK14243, phosphate transporter ATP-binding protein;
Provisional.
Length = 264
Score = 73.7 bits (181), Expect = 4e-14
Identities = 62/204 (30%), Positives = 94/204 (46%), Gaps = 25/204 (12%)
Query: 23 FPVLENVHLSLKKGEIVALVSPSGTGKSTILHIAGLLE--VPD---QGNVIIANQLCNKL 77
F ++NV L + K +I A + PSG GKSTIL L +P +G V +
Sbjct: 23 FLAVKNVWLDIPKNQITAFIGPSGCGKSTILRCFNRLNDLIPGFRVEGKVTFHGKNLYAP 82
Query: 78 SDDKKSFLRCSKIGFVYQEHRLLMDFSVIENIIFPQIIAGINHKTAYQRAMDLLSYMDMS 137
D R +IG V+Q+ S+ +NI + I G Y+ MD L +
Sbjct: 83 DVDPVEVRR--RIGMVFQKPNPFPK-SIYDNIAYGARING------YKGDMDELVERSLR 133
Query: 138 QYA---------NRRSSDISGGEQQRVAICRAIANKPLIILADEPTGNLDLKTAQQVFSI 188
Q A + +SGG+QQR+ I RAIA +P +IL DEP LD + ++ +
Sbjct: 134 QAALWDEVKDKLKQSGLSLSGGQQQRLCIARAIAVQPEVILMDEPCSALDPISTLRIEEL 193
Query: 189 LKYLVVRSGLAALIATHNHDLASQ 212
+ L + + +I THN A++
Sbjct: 194 MHELKEQYTI--IIVTHNMQQAAR 215
>gnl|CDD|172735 PRK14247, PRK14247, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 250
Score = 73.0 bits (179), Expect = 6e-14
Identities = 60/211 (28%), Positives = 105/211 (49%), Gaps = 21/211 (9%)
Query: 6 VLLLQNVKHSYRQVGKPFPVLENVHLSLKKGEIVALVSPSGTGKSTILHIAGLL-----E 60
+ ++++K S+ QV VL+ V+L + I AL+ PSG+GKST+L + L E
Sbjct: 3 KIEIRDLKVSFGQV----EVLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIELYPE 58
Query: 61 VPDQGNVIIANQLCNKLSDDKKSFLRCSKIGFVYQEHRLLMDFSVIENIIFPQIIAGI-- 118
G V + Q K+ LR ++ V+Q + + S+ EN+ + +
Sbjct: 59 ARVSGEVYLDGQDIFKMD---VIELR-RRVQMVFQIPNPIPNLSIFENVALGLKLNRLVK 114
Query: 119 NHKTAYQRAMDLLSYMDMSQYANRR----SSDISGGEQQRVAICRAIANKPLIILADEPT 174
+ K +R L + R + +SGG+QQR+ I RA+A +P ++LADEPT
Sbjct: 115 SKKELQERVRWALEKAQLWDEVKDRLDAPAGKLSGGQQQRLCIARALAFQPEVLLADEPT 174
Query: 175 GNLDLKTAQQVFSILKYLVVRSGLAALIATH 205
NLD + ++ S+ +L ++ + ++ TH
Sbjct: 175 ANLDPENTAKIESL--FLELKKDMTIVLVTH 203
>gnl|CDD|182707 PRK10762, PRK10762, D-ribose transporter ATP binding protein;
Provisional.
Length = 501
Score = 73.1 bits (180), Expect = 6e-14
Identities = 50/182 (27%), Positives = 93/182 (51%), Gaps = 12/182 (6%)
Query: 19 VGKPFP---VLENVHLSLKKGEIVALVSPSGTGKSTILHIAGLLEVPDQGNVIIANQLCN 75
+ K FP L L++ G ++ALV +G GKST++ + + D G+++ +
Sbjct: 10 IDKAFPGVKALSGAALNVYPGRVMALVGENGAGKSTMMKVLTGIYTRDAGSILYLGKEVT 69
Query: 76 KLSDDKKSFLRCSKIGFVYQEHRLLMDFSVIENII----FPQIIAGINHKTAYQRAMDLL 131
+ K S + + IG ++QE L+ ++ ENI F I+ K Y A LL
Sbjct: 70 -FNGPKSS--QEAGIGIIHQELNLIPQLTIAENIFLGREFVNRFGRIDWKKMYAEADKLL 126
Query: 132 SYMDMSQYANRRSSDISGGEQQRVAICRAIANKPLIILADEPTGNL-DLKTAQQVFSILK 190
+ +++ +++ ++S GEQQ V I + ++ + +I+ DEPT L D +T +F +++
Sbjct: 127 ARLNLRFSSDKLVGELSIGEQQMVEIAKVLSFESKVIIMDEPTDALTDTETE-SLFRVIR 185
Query: 191 YL 192
L
Sbjct: 186 EL 187
Score = 43.8 bits (104), Expect = 3e-05
Identities = 46/172 (26%), Positives = 74/172 (43%), Gaps = 27/172 (15%)
Query: 24 PVLENVHLSLKKGEIVALVSPSGTGKSTILH-IAGLLEVPDQGNVIIANQLCNKLSDDKK 82
P + +V +L+KGEI+ + G G++ ++ + G L G V + S +
Sbjct: 266 PGVNDVSFTLRKGEILGVSGLMGAGRTELMKVLYGALPR-TSGYVTLDGHEVVTRS--PQ 322
Query: 83 SFLRCSKIGFVY-QEHR----LLMDFSVIENI------IFPQIIAGINHKTAYQRAMDLL 131
L G VY E R L++ SV EN+ F + + H Q D +
Sbjct: 323 DGLAN---GIVYISEDRKRDGLVLGMSVKENMSLTALRYFSRAGGSLKHADEQQAVSDFI 379
Query: 132 SYMD-----MSQYANRRSSDISGGEQQRVAICRAIANKPLIILADEPTGNLD 178
+ M Q +SGG QQ+VAI R + +P +++ DEPT +D
Sbjct: 380 RLFNIKTPSMEQ----AIGLLSGGNQQKVAIARGLMTRPKVLILDEPTRGVD 427
>gnl|CDD|172762 PRK14274, PRK14274, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 259
Score = 72.2 bits (177), Expect = 9e-14
Identities = 56/202 (27%), Positives = 102/202 (50%), Gaps = 17/202 (8%)
Query: 26 LENVHLSLKKGEIVALVSPSGTGKSTILHIAGLL--EVPDQGNVIIANQLC----NKLSD 79
L+N++LS+ + E+ A++ PSG GKST + L+ VP NV + ++ N L
Sbjct: 28 LKNINLSIPENEVTAIIGPSGCGKSTFIKTLNLMIQMVP---NVKLTGEMNYNGSNILKG 84
Query: 80 DKKSFLRCSKIGFVYQEHRLLMDFSVIENIIF-PQIIAGINHKTAYQRA----MDLLSYM 134
IG V+Q+ S+ +N+ + P+I N K + D+ +
Sbjct: 85 KVDLVELRKNIGMVFQKGNPFPQ-SIFDNVAYGPRIHGTKNKKKLQEIVEKSLKDVALWD 143
Query: 135 DMSQYANRRSSDISGGEQQRVAICRAIANKPLIILADEPTGNLDLKTAQQVFSILKYLVV 194
++ + ++ +SGG+QQR+ I RA+A P ++L DEPT LD + +++ ++ L +
Sbjct: 144 EVKDRLHTQALSLSGGQQQRLCIARALATNPDVLLMDEPTSALDPVSTRKIEELI--LKL 201
Query: 195 RSGLAALIATHNHDLASQMDRQ 216
+ +I THN A+++ Q
Sbjct: 202 KEKYTIVIVTHNMQQAARVSDQ 223
>gnl|CDD|184134 PRK13549, PRK13549, xylose transporter ATP-binding subunit;
Provisional.
Length = 506
Score = 72.3 bits (178), Expect = 9e-14
Identities = 57/217 (26%), Positives = 107/217 (49%), Gaps = 17/217 (7%)
Query: 17 RQVGKPFPV---LENVHLSLKKGEIVALVSPSGTGKSTILHI-AGLLEVPD-QGNVIIAN 71
+ + K F L+NV L ++ GEIV+L +G GKST++ + +G+ +G +I
Sbjct: 9 KNITKTFGGVKALDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSGVYPHGTYEGEIIFEG 68
Query: 72 QL--CNKLSDDKKSFLRCSKIGFVYQEHRLLMDFSVIENIIF-PQIIAG--INHKTAYQR 126
+ + + D +++ I ++QE L+ + SV+ENI +I G +++ Y R
Sbjct: 69 EELQASNIRDTERA-----GIAIIHQELALVKELSVLENIFLGNEITPGGIMDYDAMYLR 123
Query: 127 AMDLLSYMDMSQYANRRSSDISGGEQQRVAICRAIANKPLIILADEPTGNLDLKTAQQVF 186
A LL+ + + ++ G+QQ V I +A+ + +++ DEPT +L +
Sbjct: 124 AQKLLAQLKLDINPATPVGNLGLGQQQLVEIAKALNKQARLLILDEPTASLTESETAVLL 183
Query: 187 SILKYLVVRSGLAALIATHNHDLASQMDRQIT-IRDG 222
I++ L G+A + +H + + I IRDG
Sbjct: 184 DIIRDL-KAHGIACIYISHKLNEVKAISDTICVIRDG 219
Score = 32.6 bits (75), Expect = 0.081
Identities = 16/53 (30%), Positives = 32/53 (60%), Gaps = 1/53 (1%)
Query: 147 ISGGEQQRVAICRAIANKPLIILADEPTGNLDLKTAQQVFSILKYLVVRSGLA 199
+SGG QQ+ + + + P I++ DEPT +D+ +++ ++ L V+ G+A
Sbjct: 406 LSGGNQQKAVLAKCLLLNPKILILDEPTRGIDVGAKYEIYKLINQL-VQQGVA 457
>gnl|CDD|131817 TIGR02770, nickel_nikD, nickel import ATP-binding protein NikD.
This family represents the NikD subunit of a
multisubunit nickel import ABC transporter complex.
Nickel, once imported, may be used in urease and in
certain classes of hydrogenase and superoxide dismutase.
NikD and NikE are homologous.
Length = 230
Score = 72.4 bits (178), Expect = 9e-14
Identities = 51/199 (25%), Positives = 92/199 (46%), Gaps = 7/199 (3%)
Query: 28 NVHLSLKKGEIVALVSPSGTGKSTILHIAGLLEVPDQGNVIIANQLCNKLSDDKKSFLRC 87
+++LSLK+GE++ALV SG+GKS L +L + G + ++ +R
Sbjct: 4 DLNLSLKRGEVLALVGESGSGKS--LTCLAILGLLPPGLTQTSGEILLDGRPLLPLSIRG 61
Query: 88 SKIGFVYQEHRLLMD--FSVIENIIFPQIIAGINHKTAYQRAMDLLSYMDMSQYANRRSS 145
I + Q R + F++ + I G K A ++ L + +
Sbjct: 62 RHIATIMQNPRTAFNPLFTMGNHAIETLRSLGKLSKQARALILEALEAVGLPDPEEVLKK 121
Query: 146 ---DISGGEQQRVAICRAIANKPLIILADEPTGNLDLKTAQQVFSILKYLVVRSGLAALI 202
+SGG QRV I A+ +P ++ADEPT +LD+ +V +L+ L G L+
Sbjct: 122 YPFQLSGGMLQRVMIALALLLEPPFLIADEPTTDLDVVNQARVLKLLRELRQLFGTGILL 181
Query: 203 ATHNHDLASQMDRQITIRD 221
TH+ + +++ ++ + D
Sbjct: 182 ITHDLGVVARIADEVAVMD 200
>gnl|CDD|183080 PRK11300, livG, leucine/isoleucine/valine transporter ATP-binding
subunit; Provisional.
Length = 255
Score = 72.3 bits (178), Expect = 1e-13
Identities = 50/199 (25%), Positives = 101/199 (50%), Gaps = 22/199 (11%)
Query: 28 NVHLSLKKGEIVALVSPSGTGKSTILHIAGLLEVPDQGNVIIANQLCNKLSDDKKSFLRC 87
NV+L +++ EIV+L+ P+G GK+T+ + P G +++ Q L +
Sbjct: 23 NVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYKPTGGTILLRGQHIEGLPGHQ-----I 77
Query: 88 SKIGFV--YQEHRLLMDFSVIENIIFPQ-------IIAGINHKTAY--------QRAMDL 130
+++G V +Q RL + +VIEN++ Q + +G+ A+ RA
Sbjct: 78 ARMGVVRTFQHVRLFREMTVIENLLVAQHQQLKTGLFSGLLKTPAFRRAESEALDRAATW 137
Query: 131 LSYMDMSQYANRRSSDISGGEQQRVAICRAIANKPLIILADEPTGNLDLKTAQQVFSILK 190
L + + ++ANR++ +++ G+Q+R+ I R + +P I++ DEP L+ K +++ ++
Sbjct: 138 LERVGLLEHANRQAGNLAYGQQRRLEIARCMVTQPEILMLDEPAAGLNPKETKELDELIA 197
Query: 191 YLVVRSGLAALIATHNHDL 209
L + L+ H+ L
Sbjct: 198 ELRNEHNVTVLLIEHDMKL 216
>gnl|CDD|163250 TIGR03410, urea_trans_UrtE, urea ABC transporter, ATP-binding
protein UrtE. Members of this protein family are ABC
transporter ATP-binding subunits associated with urea
transport and metabolism. This protein is found in a
conserved five-gene transport operon typically found
adjacent to urease genes. It was shown in Cyanobacteria
that disruption leads to the loss of high-affinity urea
transport activity.
Length = 230
Score = 72.2 bits (178), Expect = 1e-13
Identities = 59/231 (25%), Positives = 102/231 (44%), Gaps = 22/231 (9%)
Query: 7 LLLQNVKHSYRQVGKPFPVLENVHLSLKKGEIVALVSPSGTGKSTILH-IAGLLEVPDQG 65
L + N+ Y Q +L V L + KGE+ ++ +G GK+T+L + GLL V G
Sbjct: 1 LEVSNLNVYYGQS----HILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLPVKS-G 55
Query: 66 NVIIANQLCNKLSDDKKSFLRCSK-IGFVYQEHRLLMDFSVIENIIFPQIIAGINHKTAY 124
++ + + KL R I +V Q + +V EN++ +
Sbjct: 56 SIRLDGEDITKL----PPHERARAGIAYVPQGREIFPRLTVEENLLTGLAALPRRSRKIP 111
Query: 125 QRAMDLLSY-MDMSQYANRRSSDISGGEQQRVAICRAIANKPLIILADEPTGNLDLKTAQ 183
+L +M RR D+SGG+QQ++AI RA+ +P ++L DEPT + +
Sbjct: 112 DEIYELFPVLKEML---GRRGGDLSGGQQQQLAIARALVTRPKLLLLDEPTEGIQPSIIK 168
Query: 184 QVFSILKYLVVRSGLAALIATHNHDLASQ-------MDRQITIRDGMIADL 227
+ +++ L G+A L+ D A + M+R + G +L
Sbjct: 169 DIGRVIRRLRAEGGMAILLVEQYLDFARELADRYYVMERGRVVASGAGDEL 219
>gnl|CDD|184593 PRK14258, PRK14258, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 261
Score = 71.2 bits (174), Expect = 2e-13
Identities = 57/194 (29%), Positives = 97/194 (50%), Gaps = 17/194 (8%)
Query: 25 VLENVHLSLKKGEIVALVSPSGTGKSTILHIAGLL-----EVPDQGNVIIANQLCNKLSD 79
+LE V + + + ++ A++ PSG GKST L + EV +G V NQ +
Sbjct: 22 ILEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLNRMNELESEVRVEGRVEFFNQNIYERRV 81
Query: 80 DKKSFLRCSKIGFVYQEHRLLMDFSVIENIIFPQIIAGINHKTAYQ-------RAMDLLS 132
+ R ++ V+ + L SV +N+ + I G K + DL
Sbjct: 82 NLNRLRR--QVSMVHPKPNLF-PMSVYDNVAYGVKIVGWRPKLEIDDIVESALKDADL-- 136
Query: 133 YMDMSQYANRRSSDISGGEQQRVAICRAIANKPLIILADEPTGNLDLKTAQQVFSILKYL 192
+ ++ ++ + D+SGG+QQR+ I RA+A KP ++L DEP LD + +V S+++ L
Sbjct: 137 WDEIKHKIHKSALDLSGGQQQRLCIARALAVKPKVLLMDEPCFGLDPIASMKVESLIQSL 196
Query: 193 VVRSGLAALIATHN 206
+RS L +I +HN
Sbjct: 197 RLRSELTMVIVSHN 210
>gnl|CDD|172753 PRK14265, PRK14265, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 274
Score = 71.2 bits (174), Expect = 2e-13
Identities = 58/206 (28%), Positives = 100/206 (48%), Gaps = 27/206 (13%)
Query: 23 FPVLENVHLSLKKGEIVALVSPSGTGKSTILHIAGLLE--VPD---QGNVIIANQLCNKL 77
F L +VHL + +I+A + PSG GKST+L + +P +G ++ ++ +
Sbjct: 33 FLALVDVHLKIPAKKIIAFIGPSGCGKSTLLRCFNRMNDLIPGAKVEGRLLYRDR---NI 89
Query: 78 SDDKKSFLRCSK-IGFVYQEHRLLMDFSVIENIIFPQIIAGINHKTAYQRAMDLLSYMDM 136
D + + ++ + +G V+Q S+ ENI F G Y+ +D L +
Sbjct: 90 YDSQINSVKLRRQVGMVFQRPNPFPK-SIYENIAFAPRANG------YKGNLDELVEDSL 142
Query: 137 SQYA---------NRRSSDISGGEQQRVAICRAIANKPLIILADEPTGNLDLKTAQQVFS 187
+ A + + +SGG+QQR+ I RAIA KP ++L DEP LD + +QV
Sbjct: 143 RRAAIWEEVKDKLKEKGTALSGGQQQRLCIARAIAMKPDVLLMDEPCSALDPISTRQVEE 202
Query: 188 ILKYLVVRSGLAALIATHNHDLASQM 213
+ L ++ ++ THN AS++
Sbjct: 203 LC--LELKEQYTIIMVTHNMQQASRV 226
>gnl|CDD|130261 TIGR01193, bacteriocin_ABC, ABC-type bacteriocin transporter. This
model describes ABC-type bacteriocin transporter. The
amino terminal domain (pfam03412) processes the
N-terminal leader peptide from the bacteriocin while
C-terminal domains resemble ABC transporter membrane
protein and ATP-binding cassette domain. In general,
bacteriocins are agents which are responsible for
killing or inhibiting the closely related species or
even different strains of the same species. Bacteriocins
are usually encoded by bacterial plasmids. Bacteriocins
are named after the species and hence in literature one
encounters various names e.g., leucocin from Leuconostic
geldium; pedicocin from Pedicoccus acidilactici; sakacin
from Lactobacillus sake etc.
Length = 708
Score = 70.9 bits (174), Expect = 3e-13
Identities = 56/229 (24%), Positives = 101/229 (44%), Gaps = 27/229 (11%)
Query: 7 LLLQNVKHSYRQVGKPFPVLENVHLSLKKGEIVALVSPSGTGKSTILHIAGLLEVPDQGN 66
+++ +V +SY G +L ++ L++K +V SG+GKST+ + G
Sbjct: 474 IVINDVSYSY---GYGSNILSDISLTIKMNSKTTIVGMSGSGKSTLAKLLVGFFQARSGE 530
Query: 67 VIIANQLCNKLSDDKKSFLRCSKIGFVYQEHRLLMDFSVIENIIFPQIIAGINHKTAYQ- 125
+++ L D + LR I ++ QE + S++EN++ G +
Sbjct: 531 ILLNGFS---LKDIDRHTLRQF-INYLPQE-PYIFSGSILENLLL-----GAKENVSQDE 580
Query: 126 --RAMDLLSYMD----MSQ-YANRRSSD---ISGGEQQRVAICRAIANKPLIILADEPTG 175
A ++ D M Y S + ISGG++QR+A+ RA+ +++ DE T
Sbjct: 581 IWAACEIAEIKDDIENMPLGYQTELSEEGSSISGGQKQRIALARALLTDSKVLILDESTS 640
Query: 176 NLDLKTAQQVFSILKYLVVRSGLAALIATHNHDLASQMDRQITIRDGMI 224
NLD T ++ I+ L+ + H +A Q D+ I + G I
Sbjct: 641 NLDTITEKK---IVNNLLNLQDKTIIFVAHRLSVAKQSDKIIVLDHGKI 686
>gnl|CDD|172760 PRK14272, PRK14272, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 252
Score = 70.4 bits (172), Expect = 4e-13
Identities = 54/198 (27%), Positives = 100/198 (50%), Gaps = 14/198 (7%)
Query: 26 LENVHLSLKKGEIVALVSPSGTGKSTILHIAGLLE--VPD---QGNVIIANQLCNKLSDD 80
++NV+L +++G + AL+ PSG GK+T L + P G +++ Q D
Sbjct: 20 VKNVNLDVQRGTVNALIGPSGCGKTTFLRAINRMHDLTPGARVTGRILLDGQDIYGPRVD 79
Query: 81 KKSFLRCSKIGFVYQEHRLLMDFSVIENIIFPQIIAGINHK----TAYQRAMDLLSYMD- 135
+ R ++G V+Q+ SV +N++ +AGI + +R++ + D
Sbjct: 80 PVAMRR--RVGMVFQKPNPFPTMSVFDNVVAGLKLAGIRDRDHLMEVAERSLRGAALWDE 137
Query: 136 MSQYANRRSSDISGGEQQRVAICRAIANKPLIILADEPTGNLDLKTAQQVFSILKYLVVR 195
+ ++ +SGG+QQR+ I RA+A +P I+L DEPT LD + ++ ++ L +
Sbjct: 138 VKDRLKTPATGLSGGQQQRLCIARALAVEPEILLMDEPTSALDPASTARIEDLMTDL--K 195
Query: 196 SGLAALIATHNHDLASQM 213
+I THN A+++
Sbjct: 196 KVTTIIIVTHNMHQAARV 213
>gnl|CDD|184597 PRK14270, PRK14270, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 251
Score = 70.0 bits (171), Expect = 4e-13
Identities = 54/198 (27%), Positives = 95/198 (47%), Gaps = 15/198 (7%)
Query: 26 LENVHLSLKKGEIVALVSPSGTGKSTILHIAGLLE-----VPDQGNVIIANQLCNKLSDD 80
L +++L + + +I AL+ PSG GKST L + V +G V++ + N D
Sbjct: 20 LNDINLPIYENKITALIGPSGCGKSTFLRCLNRMNDLISNVKIEGEVLLDGK--NIYDKD 77
Query: 81 KKSFLRCSKIGFVYQEHRLLMDFSVIENIIFPQIIAGINHKTAYQRAMD-----LLSYMD 135
++G V+Q+ S+ +N+ + I GI K + ++ + +
Sbjct: 78 VDVVELRKRVGMVFQKPNPF-PMSIYDNVAYGPRIHGIKDKKELDKIVEWALKKAALWDE 136
Query: 136 MSQYANRRSSDISGGEQQRVAICRAIANKPLIILADEPTGNLDLKTAQQVFSILKYLVVR 195
+ + + +SGG+QQR+ I R IA KP +IL DEPT LD + ++ ++ L +
Sbjct: 137 VKDDLKKSALKLSGGQQQRLCIARTIAVKPDVILMDEPTSALDPISTLKIEDLMVEL--K 194
Query: 196 SGLAALIATHNHDLASQM 213
+I THN AS++
Sbjct: 195 KEYTIVIVTHNMQQASRV 212
>gnl|CDD|106587 PRK13644, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 274
Score = 70.0 bits (171), Expect = 5e-13
Identities = 67/224 (29%), Positives = 111/224 (49%), Gaps = 22/224 (9%)
Query: 9 LQNVKHSYRQVGKPFPVLENVHLSLKKGEIVALVSPSGTGKSTI-LHIAGLLEVPDQGNV 67
L+NV +SY P LEN++L +KKGE + ++ +G+GKST+ LH+ GLL P +G V
Sbjct: 4 LENVSYSYPD---GTPALENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLR-PQKGKV 59
Query: 68 IIAN-QLCN--KLSDDKKSFLRCSKIGFVYQE-HRLLMDFSVIENIIF-PQ--IIAGINH 120
+++ + KL +K +G V+Q + +V E++ F P+ + I
Sbjct: 60 LVSGIDTGDFSKLQGIRKL------VGIVFQNPETQFVGRTVEEDLAFGPENLCLPPIEI 113
Query: 121 KTAYQRAMDLLSYMDMSQYANRRSSDISGGEQQRVAICRAIANKPLIILADEPTGNLDLK 180
+ RA L+ + + +Y +R +SGG+ Q VA+ + +P ++ DE T LD
Sbjct: 114 RKRVDRA---LAEIGLEKYRHRSPKTLSGGQGQCVALAGILTMEPECLIFDEVTSMLDPD 170
Query: 181 TAQQVFSILKYLVVRSGLAALIATHNHDLASQMDRQITIRDGMI 224
+ V +K L G + THN + DR I + G I
Sbjct: 171 SGIAVLERIKKL-HEKGKTIVYITHNLEELHDADRIIVMDRGKI 213
>gnl|CDD|182880 PRK10982, PRK10982, galactose/methyl galaxtoside transporter
ATP-binding protein; Provisional.
Length = 491
Score = 69.8 bits (171), Expect = 5e-13
Identities = 56/211 (26%), Positives = 103/211 (48%), Gaps = 11/211 (5%)
Query: 19 VGKPFP---VLENVHLSLKKGEIVALVSPSGTGKSTILHIAGLLEVPDQGNVIIANQLCN 75
+ K FP L+NV+L ++ I AL+ +G GKST+L + D G+++ + +
Sbjct: 4 ISKSFPGVKALDNVNLKVRPHSIHALMGENGAGKSTLLKCLFGIYQKDSGSILFQGKEID 63
Query: 76 KLSDDKKSFLRCSKIGFVYQEHRLLMDFSVIENII---FPQIIAGINHKTAYQRAMDLLS 132
S K L + I V+QE L++ SV++N+ +P ++ Y+ +
Sbjct: 64 FKS--SKEALE-NGISMVHQELNLVLQRSVMDNMWLGRYPTKGMFVDQDKMYRDTKAIFD 120
Query: 133 YMDMSQYANRRSSDISGGEQQRVAICRAIANKPLIILADEPTGNLDLKTAQQVFSILKYL 192
+D+ + + +S + Q + I +A + I++ DEPT +L K +F+I++ L
Sbjct: 121 ELDIDIDPRAKVATLSVSQMQMIEIAKAFSYNAKIVIMDEPTSSLTEKEVNHLFTIIRKL 180
Query: 193 VVRSGLAALIATHNHDLASQMDRQITI-RDG 222
R G + +H + Q+ +ITI RDG
Sbjct: 181 KER-GCGIVYISHKMEEIFQLCDEITILRDG 210
Score = 42.4 bits (100), Expect = 9e-05
Identities = 49/221 (22%), Positives = 94/221 (42%), Gaps = 31/221 (14%)
Query: 24 PVLENVHLSLKKGEIVALVSPSGTGKSTILH-IAGLLEVPDQGNVIIANQLCNKLSDDKK 82
P + +V L KGEI+ + G ++ I+ + G+ E G + + + N
Sbjct: 262 PSIRDVSFDLHKGEILGIAGLVGAKRTDIVETLFGIRE-KSAGTITLHGKKINN-----H 315
Query: 83 SFLRCSKIGF--VYQEHRLLMDFSVIENIIFPQIIAGINHKTAYQRAMDLLSYMDM---- 136
+ GF V +E R ++ ++ I F +I+ I Y+ + LL M
Sbjct: 316 NANEAINHGFALVTEERRSTGIYAYLD-IGFNSLISNIR---NYKNKVGLLDNSRMKSDT 371
Query: 137 ------------SQYANRRSSDISGGEQQRVAICRAIANKPLIILADEPTGNLDLKTAQQ 184
S +SGG QQ+V I R + +P I++ DEPT +D+ +
Sbjct: 372 QWVIDSMRVKTPGHRTQIGS--LSGGNQQKVIIGRWLLTQPEILMLDEPTRGIDVGAKFE 429
Query: 185 VFSILKYLVVRSGLAALIATHNHDLASQMDRQITIRDGMIA 225
++ ++ L + +I++ +L DR + + +G++A
Sbjct: 430 IYQLIAELAKKDKGIIIISSEMPELLGITDRILVMSNGLVA 470
>gnl|CDD|183044 PRK11231, fecE, iron-dicitrate transporter ATP-binding subunit;
Provisional.
Length = 255
Score = 69.7 bits (171), Expect = 5e-13
Identities = 46/169 (27%), Positives = 77/169 (45%), Gaps = 26/169 (15%)
Query: 24 PVLENVHLSLKKGEIVALVSPSGTGKSTILHIAGLLEVPDQGNVIIANQLCNKLSDDKKS 83
+L ++ LSL G+I AL+ P+G GKST+L L P G V + ++ + LS +
Sbjct: 16 RILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLTPQSGTVFLGDKPISMLSS--RQ 73
Query: 84 FLRCSKIGFVYQEHRLLMDFSVIENIIFPQIIA-------------GINHKTAYQRAMDL 130
R + + Q H E I +++A +AM+
Sbjct: 74 LARR--LALLPQHH------LTPEGITVRELVAYGRSPWLSLWGRLSAEDNARVNQAME- 124
Query: 131 LSYMDMSQYANRRSSDISGGEQQRVAICRAIANKPLIILADEPTGNLDL 179
++ A+RR +D+SGG++QR + +A ++L DEPT LD+
Sbjct: 125 --QTRINHLADRRLTDLSGGQRQRAFLAMVLAQDTPVVLLDEPTTYLDI 171
>gnl|CDD|162130 TIGR00955, 3a01204, The Eye Pigment Precursor Transporter (EPP)
Family protein.
Length = 617
Score = 69.7 bits (171), Expect = 6e-13
Identities = 55/212 (25%), Positives = 98/212 (46%), Gaps = 18/212 (8%)
Query: 26 LENVHLSLKKGEIVALVSPSGTGKSTILHI-AGLLEVPDQGNVIIANQLCNKLSDDKKSF 84
L+NV K GE++A++ SG GK+T+++ A +G + L N + D K
Sbjct: 41 LKNVSGVAKPGELLAVMGSSGAGKTTLMNALAFRSP---KGVKGSGSVLLNGMPIDAKEM 97
Query: 85 LRCSKIGFVYQEHRLLMDFSVIENIIFPQII---AGINHKTAYQRAMDLLSYMDMSQYAN 141
S +V Q+ + +V E+++F + + K +R ++L + + + AN
Sbjct: 98 RAIS--AYVQQDDLFIPTLTVREHLMFQAHLRMPRRVTKKEKRERVDEVLQALGLRKCAN 155
Query: 142 RRSSD------ISGGEQQRVAICRAIANKPLIILADEPTGNLDLKTAQQVFSILKYLVVR 195
R +SGGE++R+A + P ++ DEPT LD A V +LK L +
Sbjct: 156 TRIGVPGRVKGLSGGERKRLAFASELLTDPPLLFCDEPTSGLDSFMAYSVVQVLKGL-AQ 214
Query: 196 SGLAALIATH--NHDLASQMDRQITIRDGMIA 225
G + H + +L D+ I + +G +A
Sbjct: 215 KGKTIICTIHQPSSELFELFDKIILMAEGRVA 246
>gnl|CDD|130324 TIGR01257, rim_protein, retinal-specific rim ABC transporter. This
model describes the photoreceptor protein (rim protein)
in eukaryotes. It is the member of ABC transporter
superfamily. Rim protein is a membrane glycoprotein which
is localized in the photoreceptor outer segment discs.
Mutation/s in its genetic loci is implicated in the
recessive Stargardt's disease.
Length = 2272
Score = 68.9 bits (168), Expect = 1e-12
Identities = 48/196 (24%), Positives = 94/196 (47%), Gaps = 7/196 (3%)
Query: 24 PVLENVHLSLKKGEIVALVSPSGTGKSTILHIAGLLEVPDQGNVIIANQLCNKLSDDKKS 83
P ++ ++++ + +I A + +G GK+T L I L P G V++ + D +
Sbjct: 944 PAVDRLNITFYENQITAFLGHNGAGKTTTLSILTGLLPPTSGTVLVGGKDIETNLDAVRQ 1003
Query: 84 FLRCSKIGFVYQEHRLLMDFSVIENIIFPQIIAGINHKTAYQRAMDLLSYMDMSQYANRR 143
L G Q + L +V E+I+F + G + + A +L + N
Sbjct: 1004 SL-----GMCPQHNILFHHLTVAEHILFYAQLKGRSWEEAQLEMEAMLEDTGLHHKRNEE 1058
Query: 144 SSDISGGEQQRVAICRAIANKPLIILADEPTGNLDLKTAQQVFSILKYLVVRSGLAALIA 203
+ D+SGG Q+++++ A +++ DEPT +D + + ++ +L L RSG +++
Sbjct: 1059 AQDLSGGMQRKLSVAIAFVGDAKVVVLDEPTSGVDPYSRRSIWDLL--LKYRSGRTIIMS 1116
Query: 204 THNHDLASQMDRQITI 219
TH+ D A + +I I
Sbjct: 1117 THHMDEADLLGDRIAI 1132
Score = 46.5 bits (110), Expect = 5e-06
Identities = 45/217 (20%), Positives = 94/217 (43%), Gaps = 32/217 (14%)
Query: 2 DSAEVLLLQNVKHSYRQVGKPFPVLENVHLSLKKGEIVALVSPSGTGKSTILHIAGLLEV 61
+ ++L L + Y G P ++ + + ++ GE L+ +G GK+T +
Sbjct: 1933 NKTDILRLNELTKVYS--GTSSPAVDRLCVGVRPGECFGLLGVNGAGKTTTFKMLTGDTT 1990
Query: 62 PDQGNVIIANQLCNKLSDDKKSFLRCSKIGFVYQEHRLLMDFSVIENIIFPQIIAGINHK 121
G+ +A KS L + I V+Q F I++++ G H
Sbjct: 1991 VTSGDATVAG----------KSIL--TNISDVHQNMGYCPQFDAIDDLL-----TGREHL 2033
Query: 122 TAYQRAMDL------------LSYMDMSQYANRRSSDISGGEQQRVAICRAIANKPLIIL 169
Y R + + + +S YA+R + SGG +++++ A+ P ++L
Sbjct: 2034 YLYARLRGVPAEEIEKVANWSIQSLGLSLYADRLAGTYSGGNKRKLSTAIALIGCPPLVL 2093
Query: 170 ADEPTGNLDLKTAQQVFSILKYLVVRSGLAALIATHN 206
DEPT +D + + +++ + ++R G A ++ +H+
Sbjct: 2094 LDEPTTGMDPQARRMLWNTI-VSIIREGRAVVLTSHS 2129
>gnl|CDD|172745 PRK14257, PRK14257, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 329
Score = 68.6 bits (167), Expect = 1e-12
Identities = 62/237 (26%), Positives = 116/237 (48%), Gaps = 18/237 (7%)
Query: 1 MDSAEVLLLQNVKHSYRQVGKPFPVLENVHLSLKKGEIVALVSPSGTGKSTIL----HIA 56
+ A V ++N Y K VL +++L +K+ ++ A + PSG GKST L +
Sbjct: 75 FNHANVFEIRNFNFWYMNRTKH--VLHDLNLDIKRNKVTAFIGPSGCGKSTFLRNLNQLN 132
Query: 57 GLLE-VPDQGNVIIANQLCNKLSDDKKSFLRCSKIGFVYQEHRLLMDFSVIENIIFPQII 115
L+E +G + N S S ++IG V+Q+ + S+ +N+ +
Sbjct: 133 DLIEGTSHEGEIYFLGT--NTRSKKISSLELRTRIGMVFQKPTPF-EMSIFDNVAYGPRN 189
Query: 116 AGINHKTAYQRAMD--LLS---YMDMSQYANRRSSDISGGEQQRVAICRAIANKPLIILA 170
GIN + ++ ++ L S + ++ ++ + +SGG+QQR+ I RAIA +P ++L
Sbjct: 190 NGINDRKILEKIVEKSLKSAALWDEVKDDLDKAGNALSGGQQQRLCIARAIALEPEVLLM 249
Query: 171 DEPTGNLDLKTAQQVFSILKYLVVRSGLAALIATHNHDLASQM-DRQITIRDGMIAD 226
DEPT LD ++ ++ L ++ + +I TH+ A ++ D + G I +
Sbjct: 250 DEPTSALDPIATAKIEELI--LELKKKYSIIIVTHSMAQAQRISDETVFFYQGWIEE 304
>gnl|CDD|172740 PRK14252, PRK14252, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 265
Score = 68.5 bits (167), Expect = 1e-12
Identities = 56/201 (27%), Positives = 97/201 (48%), Gaps = 13/201 (6%)
Query: 23 FPVLENVHLSLKKGEIVALVSPSGTGKSTILHIAGLLE--VPD---QGNVIIANQLCNKL 77
+ L+N+++ + + ++ AL+ PSG GKST L + P +G +I+ N L
Sbjct: 29 YQALKNINMMVHEKQVTALIGPSGCGKSTFLRCFNRMHDLYPGNHYEGEIILHPDNVNIL 88
Query: 78 SDDKKSFLRCSKIGFVYQEHRLLMDFSVIENIIFPQIIAGINHKTAY-QRAMDLLSYMDM 136
S + +I V+Q+ S+ EN+ + I G+ ++ +R + L +
Sbjct: 89 SPEVDPIEVRMRISMVFQKPNPFPK-SIFENVAYGLRIRGVKRRSILEERVENALRNAAL 147
Query: 137 SQYANRRSSDI----SGGEQQRVAICRAIANKPLIILADEPTGNLDLKTAQQVFSILKYL 192
R D+ SGG+QQR+ I RA+A P I+L DEPT LD + ++ L
Sbjct: 148 WDEVKDRLGDLAFNLSGGQQQRLCIARALATDPEILLFDEPTSALDPIATASIEELISDL 207
Query: 193 VVRSGLAALIATHNHDLASQM 213
++ + LI THN A+++
Sbjct: 208 --KNKVTILIVTHNMQQAARV 226
>gnl|CDD|130260 TIGR01192, chvA, glucan exporter ATP-binding protein. This model
describes glucan exporter ATP binding protein in
bacteria. It belongs to the larger ABC transporter
superfamily with the characteristic ATP binding motif.
The In general, this protein is in some ways implicated
in osmoregulation and suggested to participate in the
export of glucan from the cytoplasm to periplasm. The
cyclic beta-1,2-glucan in the bactrerial periplasmic
space is suggested to confer the property of high
osmolority. It has also been demonstrated that mutants
in this loci have lost functions of virulence and
motility. It is unclear as to how virulence and
osmoadaptaion are related.
Length = 585
Score = 68.4 bits (167), Expect = 2e-12
Identities = 58/189 (30%), Positives = 97/189 (51%), Gaps = 18/189 (9%)
Query: 9 LQNVKHS--YRQVGKPFPV----LENVHLSLKKGEIVALVSPSGTGKSTILHIAGLLEVP 62
L NVK + +R + F + +V K G+ VA+V P+G GK+T++++ + P
Sbjct: 328 LPNVKGAVEFRHITFEFANSSQGVFDVSFEAKAGQTVAIVGPTGAGKTTLINLLQRVYDP 387
Query: 63 DQGNVIIANQLCNKLSDDKKSFLRCSKIGFVYQEHRLLMDFSVIENIIFPQIIAGINHKT 122
G ++I N ++ ++S LR S I V+Q+ L + S+ ENI + A
Sbjct: 388 TVGQILIDGIDINTVT--RES-LRKS-IATVFQDAGL-FNRSIRENIRLGREGATDEEVY 442
Query: 123 AYQRAMDLLSYMD--MSQY---ANRRSSDISGGEQQRVAICRAI-ANKPLIILADEPTGN 176
+A ++ + Y R + +SGGE+QR+AI RAI N P+++L DE T
Sbjct: 443 EAAKAAAAHDFILKRSNGYDTLVGERGNRLSGGERQRLAIARAILKNAPILVL-DEATSA 501
Query: 177 LDLKTAQQV 185
LD++T +V
Sbjct: 502 LDVETEARV 510
>gnl|CDD|178676 PLN03130, PLN03130, ABC transporter C family member; Provisional.
Length = 1622
Score = 68.2 bits (167), Expect = 2e-12
Identities = 60/208 (28%), Positives = 101/208 (48%), Gaps = 28/208 (13%)
Query: 24 PVLENVHLSLKKGEIVALVSPSGTGKSTILHIAGLLEVP--DQGNVIIANQLCNKLSDDK 81
P L N++L + G +VA+V +G GK++++ A L E+P +V+I
Sbjct: 631 PTLSNINLDVPVGSLVAIVGSTGEGKTSLIS-AMLGELPPRSDASVVIR----------- 678
Query: 82 KSFLRCSKIGFVYQEHRLLMDFSVIENIIF-----PQIIAGINHKTAYQRAMDLLSYMDM 136
+ +V Q + + +V +NI+F P+ TA Q +DLL D+
Sbjct: 679 ------GTVAYVPQV-SWIFNATVRDNILFGSPFDPERYERAIDVTALQHDLDLLPGGDL 731
Query: 137 SQYANRRSSDISGGEQQRVAICRAIANKPLIILADEPTGNLDLKTAQQVFSILKYLVVRS 196
++ R +ISGG++QRV++ RA+ + + + D+P LD +QVF +R
Sbjct: 732 TEIG-ERGVNISGGQKQRVSMARAVYSNSDVYIFDDPLSALDAHVGRQVFDKCIKDELRG 790
Query: 197 GLAALIATHNHDLASQMDRQITIRDGMI 224
L+ H L SQ+DR I + +GMI
Sbjct: 791 KTRVLVTNQLHFL-SQVDRIILVHEGMI 817
Score = 27.4 bits (61), Expect = 3.4
Identities = 13/46 (28%), Positives = 25/46 (54%)
Query: 24 PVLENVHLSLKKGEIVALVSPSGTGKSTILHIAGLLEVPDQGNVII 69
PVL + + E V +V +G GKS++L+ + ++G ++I
Sbjct: 1253 PVLHGLSFEISPSEKVGIVGRTGAGKSSMLNALFRIVELERGRILI 1298
>gnl|CDD|178771 PLN03232, PLN03232, ABC transporter C family member; Provisional.
Length = 1495
Score = 68.1 bits (166), Expect = 2e-12
Identities = 59/209 (28%), Positives = 102/209 (48%), Gaps = 26/209 (12%)
Query: 24 PVLENVHLSLKKGEIVALVSPSGTGKSTILHIAGLLEVPDQGNVIIANQLCNKLSDDKKS 83
P L +++L + G +VA+V +G GK++++ A L E+ ++
Sbjct: 631 PTLSDINLEIPVGSLVAIVGGTGEGKTSLIS-AMLGELSH--------------AETSSV 675
Query: 84 FLRCSKIGFVYQEHRLLMDFSVIENIIF-----PQIIAGINHKTAYQRAMDLLSYMDMSQ 138
+R S + +V Q + + +V ENI+F + TA Q +DLL D+++
Sbjct: 676 VIRGS-VAYVPQV-SWIFNATVRENILFGSDFESERYWRAIDVTALQHDLDLLPGRDLTE 733
Query: 139 YANRRSSDISGGEQQRVAICRAIANKPLIILADEPTGNLDLKTAQQVF-SILKYLVVRSG 197
R +ISGG++QRV++ RA+ + I + D+P LD A QVF S +K + G
Sbjct: 734 IG-ERGVNISGGQKQRVSMARAVYSNSDIYIFDDPLSALDAHVAHQVFDSCMKDEL--KG 790
Query: 198 LAALIATHNHDLASQMDRQITIRDGMIAD 226
++ T+ MDR I + +GMI +
Sbjct: 791 KTRVLVTNQLHFLPLMDRIILVSEGMIKE 819
Score = 27.3 bits (60), Expect = 3.2
Identities = 11/36 (30%), Positives = 25/36 (69%)
Query: 146 DISGGEQQRVAICRAIANKPLIILADEPTGNLDLKT 181
+ S G++Q +++ RA+ + I++ DE T ++D++T
Sbjct: 1371 NFSVGQRQLLSLARALLRRSKILVLDEATASVDVRT 1406
>gnl|CDD|172763 PRK14275, PRK14275, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 286
Score = 68.0 bits (166), Expect = 2e-12
Identities = 58/209 (27%), Positives = 99/209 (47%), Gaps = 31/209 (14%)
Query: 23 FPVLENVHLSLKKGEIVALVSPSGTGKSTIL-------------HIAGLLEVPDQGNVII 69
F ++ V+ + + A++ PSG GKST L H G L +
Sbjct: 52 FEAVKKVNADILSKYVTAIIGPSGCGKSTFLRAINRMNDLIPSCHTTGAL-------MFD 104
Query: 70 ANQLCNKLSDDKKSFLRCSKIGFVYQEHRLLMDFSVIENIIFPQIIAGINHKTAY----Q 125
+ K +D+ LR KIG V+Q+ S+ +NI + + GIN K +
Sbjct: 105 GEDIYGKFTDE--VLLR-KKIGMVFQKPNPFPK-SIFDNIAYGPRLHGINDKKQLEEIVE 160
Query: 126 RAMDLLSYMD-MSQYANRRSSDISGGEQQRVAICRAIANKPLIILADEPTGNLDLKTAQQ 184
+++ + D +S ++ + +SGG+QQR+ + R +A +P I+L DEPT LD K +
Sbjct: 161 KSLRKAALWDEVSDRLDKNALGLSGGQQQRLCVARTLAVEPEILLLDEPTSALDPKATAK 220
Query: 185 VFSILKYLVVRSGLAALIATHNHDLASQM 213
+ +++ L R +I THN AS++
Sbjct: 221 IEDLIQEL--RGSYTIMIVTHNMQQASRV 247
>gnl|CDD|172732 PRK14244, PRK14244, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 251
Score = 67.9 bits (166), Expect = 2e-12
Identities = 59/214 (27%), Positives = 103/214 (48%), Gaps = 17/214 (7%)
Query: 25 VLENVHLSLKKGEIVALVSPSGTGKSTILHIAGLLE--VPD---QGNVIIANQLCNKLSD 79
+L +++L + K E+ A + PSG GKST L + VP+ +G + I + S
Sbjct: 20 ILFDINLDIYKREVTAFIGPSGCGKSTFLRCFNRMNDFVPNCKVKGELDIDG--IDVYSV 77
Query: 80 DKKSFLRCSKIGFVYQEHRLLMDFSVIENIIFPQIIAGI--NHKTAYQRAMDLLSYMDMS 137
D L +K+G V+Q+ S+ +N+ + + G+ N K + L+ + +
Sbjct: 78 DTNVVLLRAKVGMVFQKPNPFPK-SIYDNVAYGPKLHGLAKNKKKLDEIVEKSLTSVGLW 136
Query: 138 QYANRRSSD----ISGGEQQRVAICRAIANKPLIILADEPTGNLDLKTAQQVFSILKYLV 193
+ R D +SGG+QQR+ I RAIA KP ++L DEP LD + ++++ L
Sbjct: 137 EELGDRLKDSAFELSGGQQQRLCIARAIAVKPTMLLMDEPCSALDPVATNVIENLIQELK 196
Query: 194 VRSGLAALIATHNHDLASQM-DRQITIRDGMIAD 226
++ TH+ A ++ DR + G I +
Sbjct: 197 KN--FTIIVVTHSMKQAKKVSDRVAFFQSGRIVE 228
>gnl|CDD|172748 PRK14260, PRK14260, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 259
Score = 67.7 bits (165), Expect = 2e-12
Identities = 52/199 (26%), Positives = 93/199 (46%), Gaps = 17/199 (8%)
Query: 26 LENVHLSLKKGEIVALVSPSGTGKSTILHIAGLLE-----VPDQGNVIIANQLCNKLSDD 80
+E + + + + ++ A++ PSG GKST + + V +G V Q + D
Sbjct: 23 IEGISMDIYRNKVTAIIGPSGCGKSTFIKTLNRISELEGPVKVEGVVDFFGQ---NIYDP 79
Query: 81 KKSFLRCSK-IGFVYQEHRLLMDFSVIENIIFPQIIAGINHKTAYQRAMD-----LLSYM 134
+ + R + IG V+Q S+ EN+ + I+ + ++ +
Sbjct: 80 RININRLRRQIGMVFQRPNPF-PMSIYENVAYGVRISAKLPQADLDEIVESALKGAALWQ 138
Query: 135 DMSQYANRRSSDISGGEQQRVAICRAIANKPLIILADEPTGNLDLKTAQQVFSILKYLVV 194
++ N+ + +SGG+QQR+ I RA+A KP ++L DEP LD +V ++ L
Sbjct: 139 EVKDKLNKSALGLSGGQQQRLCIARALAIKPKVLLMDEPCSALDPIATMKVEELIHSL-- 196
Query: 195 RSGLAALIATHNHDLASQM 213
RS L I THN A+++
Sbjct: 197 RSELTIAIVTHNMQQATRV 215
>gnl|CDD|163452 TIGR03740, galliderm_ABC, gallidermin-class lantibiotic protection
ABC transporter, ATP-binding subunit. Model TIGR03731
represents the family of all lantibiotics related to
gallidermin, including epidermin, mutatin, and nisin.
This protein family describes the ATP-binding subunit of
a gallidermin/epidermin class lantibiotic protection
transporter. It is largely restricted to
gallidermin-family lantibiotic biosynthesis and export
cassettes, but also occurs in orphan transporter
cassettes in species that lack candidate lantibiotic
precursor and synthetase genes.
Length = 223
Score = 67.0 bits (164), Expect = 4e-12
Identities = 47/200 (23%), Positives = 94/200 (47%), Gaps = 19/200 (9%)
Query: 7 LLLQNVKHSYRQVGKPFPVLENVHLSLKKGEIVALVSPSGTGKSTILH-IAGLLEVPDQG 65
L +N+ + + + N+ L++ K + L+ P+G GKST+L I G+L P G
Sbjct: 1 LETKNLSKRFGKQT----AVNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGILR-PTSG 55
Query: 66 NVIIANQLCNKLSDDKKSFLRCSKIGFVYQEHRLLMDFSVIENIIFPQIIAGINHKTAYQ 125
+I + D KIG + + L + + EN+ + G+
Sbjct: 56 EIIFDGHPWTR-KD-------LHKIGSLIESPPLYENLTARENLKVHTTLLGLP----DS 103
Query: 126 RAMDLLSYMDMSQYANRRSSDISGGEQQRVAICRAIANKPLIILADEPTGNLDLKTAQQV 185
R ++L+ +D++ +++ S G +QR+ I A+ N P +++ DEPT LD Q++
Sbjct: 104 RIDEVLNIVDLTNTGKKKAKQFSLGMKQRLGIAIALLNHPKLLILDEPTNGLDPIGIQEL 163
Query: 186 FSILKYLVVRSGLAALIATH 205
+++ G+ ++++H
Sbjct: 164 RELIR-SFPEQGITVILSSH 182
>gnl|CDD|183016 PRK11176, PRK11176, lipid transporter ATP-binding/permease protein;
Provisional.
Length = 582
Score = 66.6 bits (163), Expect = 5e-12
Identities = 66/225 (29%), Positives = 108/225 (48%), Gaps = 25/225 (11%)
Query: 11 NVKHSYRQVGKPFPVLENVHLSLKKGEIVALVSPSGTGKSTILHIAGLLEVPDQGNVIIA 70
NV +Y GK P L N++ + G+ VALV SG+GKSTI ++ D+G +++
Sbjct: 346 NVTFTYP--GKEVPALRNINFKIPAGKTVALVGRSGSGKSTIANLLTRFYDIDEGEILLD 403
Query: 71 NQLCNKLSDDKKSFLRCSKIGFVYQEHRLLMDFSVIENIIFP--------QIIAGINHKT 122
L D + LR +++ V Q L D ++ NI + QI +
Sbjct: 404 GH---DLRDYTLASLR-NQVALVSQNVHLFND-TIANNIAYARTEQYSREQIEEAA--RM 456
Query: 123 AYQRAMDLLSYMD--MSQYANRRSSDISGGEQQRVAICRAI-ANKPLIILADEPTGNLDL 179
AY AMD ++ MD + +SGG++QR+AI RA+ + P++IL DE T LD
Sbjct: 457 AY--AMDFINKMDNGLDTVIGENGVLLSGGQRQRIAIARALLRDSPILIL-DEATSALDT 513
Query: 180 KTAQQVFSILKYLVVRSGLAALIATHNHDLASQMDRQITIRDGMI 224
++ + + + L L + +L+ H + D + + DG I
Sbjct: 514 ESERAIQAALDEL--QKNRTSLVIAHRLSTIEKADEILVVEDGEI 556
>gnl|CDD|184592 PRK14254, PRK14254, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 285
Score = 66.4 bits (162), Expect = 6e-12
Identities = 51/196 (26%), Positives = 93/196 (47%), Gaps = 13/196 (6%)
Query: 26 LENVHLSLKKGEIVALVSPSGTGKSTILH-IAGLLEVPD----QGNVIIANQLCNKLSDD 80
L++V + + + ++ A++ PSG GKST L I + ++ D +G + + N D
Sbjct: 55 LDDVSMDIPENQVTAMIGPSGCGKSTFLRCINRMNDLIDAARVEGELTFRGK--NVYDAD 112
Query: 81 KKSFLRCSKIGFVYQEHRLLMDFSVIENIIFPQIIAGI--NHKTAYQRAMDLLSYMD-MS 137
+IG V+Q+ S+ +N+ + I G + + ++ + D +
Sbjct: 113 VDPVALRRRIGMVFQKPNPFPK-SIYDNVAYGLKIQGYDGDIDERVEESLRRAALWDEVK 171
Query: 138 QYANRRSSDISGGEQQRVAICRAIANKPLIILADEPTGNLDLKTAQQVFSILKYLVVRSG 197
+ D+SGG+QQR+ I RAIA P +IL DEP LD ++ +++ L
Sbjct: 172 DQLDSSGLDLSGGQQQRLCIARAIAPDPEVILMDEPASALDPVATSKIEDLIEELA--EE 229
Query: 198 LAALIATHNHDLASQM 213
+I THN A+++
Sbjct: 230 YTVVIVTHNMQQAARI 245
>gnl|CDD|131681 TIGR02633, xylG, D-xylose ABC transporter, ATP-binding protein.
Several bacterial species have enzymes xylose isomerase
and xylulokinase enzymes for xylose utilization. Members
of this protein family are the ATP-binding cassette
(ABC) subunit of the known or predicted high-affinity
xylose ABC transporter for xylose import. These genes,
which closely resemble other sugar transport ABC
transporter genes, typically are encoded near xylose
utilization enzymes and regulatory proteins. Note that
this form of the transporter contains two copies of the
ABC transporter domain (pfam00005).
Length = 500
Score = 66.0 bits (161), Expect = 8e-12
Identities = 56/207 (27%), Positives = 99/207 (47%), Gaps = 16/207 (7%)
Query: 26 LENVHLSLKKGEIVALVSPSGTGKSTILHI-AGLLEVPD-QGNVIIANQ--LCNKLSDDK 81
L+ + L ++ GE V L +G GKST++ I +G+ G + + + + D +
Sbjct: 17 LDGIDLEVRPGECVGLCGENGAGKSTLMKILSGVYPHGTWDGEIYWSGSPLKASNIRDTE 76
Query: 82 KSFLRCSKIGFVYQEHRLLMDFSVIENIIFPQII---AGINHKTA-YQRAMDLLSYMDMS 137
++ I ++QE L+ + SV ENI I G A Y RA +LL + +
Sbjct: 77 RA-----GIVIIHQELTLVPELSVAENIFLGNEITLPGGRMAYNAMYLRAKNLLRELQLD 131
Query: 138 QYANRRS-SDISGGEQQRVAICRAIANKPLIILADEPTGNLDLKTAQQVFSILKYLVVRS 196
R D GG+QQ V I +A+ + +++ DEP+ +L K + + I++ L
Sbjct: 132 ADNVTRPVGDYGGGQQQLVEIAKALNKQARLLILDEPSSSLTEKETEILLDIIRDL-KAH 190
Query: 197 GLAALIATHN-HDLASQMDRQITIRDG 222
G+A + +H +++ + D IRDG
Sbjct: 191 GVACVYISHKLNEVKAVCDTICVIRDG 217
Score = 35.6 bits (82), Expect = 0.011
Identities = 40/210 (19%), Positives = 90/210 (42%), Gaps = 19/210 (9%)
Query: 26 LENVHLSLKKGEIVALVSPSGTGKS-TILHIAGLLEVPDQGNVIIANQLCNKLSDDKKSF 84
+++V SL++GEI+ + G G++ + + G +GNV I N D ++
Sbjct: 276 VDDVSFSLRRGEILGVAGLVGAGRTELVQALFGAYPGKFEGNVFI-----NGKPVDIRNP 330
Query: 85 LRCSKIGFVY-----QEHRLLMDFSVIENIIFPQIIAGINHKTAYQRAMDLLSYM-DMSQ 138
+ + G + H ++ V +NI ++ K A +L + +
Sbjct: 331 AQAIRAGIAMVPEDRKRHGIVPILGVGKNITL-SVLKSFCFKMRIDAAAELQIIGSAIQR 389
Query: 139 YANRRSS------DISGGEQQRVAICRAIANKPLIILADEPTGNLDLKTAQQVFSILKYL 192
+ +S +SGG QQ+ + + + P +++ DEPT +D+ +++ ++ L
Sbjct: 390 LKVKTASPFLPIGRLSGGNQQKAVLAKMLLTNPRVLILDEPTRGVDVGAKYEIYKLINQL 449
Query: 193 VVRSGLAALIATHNHDLASQMDRQITIRDG 222
++++ ++ DR + I +G
Sbjct: 450 AQEGVAIIVVSSELAEVLGLSDRVLVIGEG 479
>gnl|CDD|183231 PRK11614, livF, leucine/isoleucine/valine transporter ATP-binding
subunit; Provisional.
Length = 237
Score = 65.7 bits (160), Expect = 9e-12
Identities = 53/224 (23%), Positives = 104/224 (46%), Gaps = 17/224 (7%)
Query: 9 LQNVKHSYRQVGKPF---PVLENVHLSLKKGEIVALVSPSGTGKSTILHIAGLLEVPDQG 65
++ V S+ +V + L V L + +GEIV L+ +G GK+T+L G
Sbjct: 1 MEKVMLSFDKVSAHYGKIQALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPRATSG 60
Query: 66 NVIIANQLCNKLSDDKKSFLRCSKIGFVYQEHRLLMDFSVIENIIFPQIIAGINHKTAYQ 125
++ + ++D + + + + V + R+ +V EN+ A + +Q
Sbjct: 61 RIVFDGK---DITDWQTAKIMREAVAIVPEGRRVFSRMTVEENLAMGGFFA---ERDQFQ 114
Query: 126 ----RAMDLLSYMDMSQYANRRSSDISGGEQQRVAICRAIANKPLIILADEPTGNLDLKT 181
+L + + + +R+ +SGGEQQ +AI RA+ ++P ++L DEP+ L
Sbjct: 115 ERIKWVYEL--FPRLHERRIQRAGTMSGGEQQMLAIGRALMSQPRLLLLDEPSLGLAPII 172
Query: 182 AQQVFSILKYLVVRSGLAALIATHNHDLASQM-DRQITIRDGMI 224
QQ+F ++ L G+ + N + A ++ DR + +G +
Sbjct: 173 IQQIFDTIEQL-REQGMTIFLVEQNANQALKLADRGYVLENGHV 215
>gnl|CDD|172756 PRK14268, PRK14268, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 258
Score = 65.4 bits (159), Expect = 1e-11
Identities = 56/199 (28%), Positives = 90/199 (45%), Gaps = 18/199 (9%)
Query: 26 LENVHLSLKKGEIVALVSPSGTGKSTILHIAGLLEVPD-------QGNVIIANQLCNKLS 78
L+NV + + K + AL+ PSG GKST I L + D +G V I + +
Sbjct: 28 LKNVSMQIPKNSVTALIGPSGCGKSTF--IRCLNRMNDLIKNCRIEGKVSIEGEDIYEPD 85
Query: 79 DDKKSFLRCSKIGFVYQEHRLLMDFSVIENIIFPQIIAGINHK----TAYQRAMDLLSYM 134
D + +G V+Q+ S+ +N+ + I G N K +
Sbjct: 86 VDVVELRK--NVGMVFQKPNPF-PMSIYDNVAYGPRIHGANKKDLDGVVENALRSAALWD 142
Query: 135 DMSQYANRRSSDISGGEQQRVAICRAIANKPLIILADEPTGNLDLKTAQQVFSILKYLVV 194
+ S + +SGG+QQR+ I R +A KP IIL DEPT LD + ++ ++ L
Sbjct: 143 ETSDRLKSPALSLSGGQQQRLCIARTLAVKPKIILFDEPTSALDPISTARIEDLIMNL-- 200
Query: 195 RSGLAALIATHNHDLASQM 213
+ +I THN A+++
Sbjct: 201 KKDYTIVIVTHNMQQAARI 219
>gnl|CDD|184584 PRK14238, PRK14238, phosphate transporter ATP-binding protein;
Provisional.
Length = 271
Score = 65.3 bits (159), Expect = 1e-11
Identities = 55/206 (26%), Positives = 99/206 (48%), Gaps = 31/206 (15%)
Query: 26 LENVHLSLKKGEIVALVSPSGTGKSTILH-----IAGLLEVPDQGNVIIANQLCNKLSDD 80
L+N++L + + E+ A++ PSG GKST + + + V G ++ +Q + D
Sbjct: 40 LKNINLDIHENEVTAIIGPSGCGKSTYIKTLNRMVELVPSVKTTGKILYRDQ---NIFDK 96
Query: 81 KKSF--LRCSKIGFVYQEHRLLMDFSVIENIIFPQIIAGINHKTAYQRAMD--------- 129
S LR + +G V+Q+ S+ +N+ + I GI K ++
Sbjct: 97 SYSVEELR-TNVGMVFQKPNPFPK-SIYDNVTYGPKIHGIKDKKTLDEIVEKSLRGAAIW 154
Query: 130 --LLSYMDMSQYANRRSSDISGGEQQRVAICRAIANKPLIILADEPTGNLDLKTAQQVFS 187
L + + Y +SGG+QQR+ I R +A +P +IL DEPT LD + +V
Sbjct: 155 DELKDRLHDNAYG------LSGGQQQRLCIARCLAIEPDVILMDEPTSALDPISTLKVEE 208
Query: 188 ILKYLVVRSGLAALIATHNHDLASQM 213
+++ L + + +I THN A+++
Sbjct: 209 LVQEL--KKDYSIIIVTHNMQQAARI 232
>gnl|CDD|184214 PRK13657, PRK13657, cyclic beta-1,2-glucan ABC transporter;
Provisional.
Length = 588
Score = 64.6 bits (158), Expect = 2e-11
Identities = 52/187 (27%), Positives = 87/187 (46%), Gaps = 25/187 (13%)
Query: 10 QNVKHSYRQVGKPFPVLENVHLSLKKGEIVALVSPSGTGKSTILHIAGLLEV---PDQGN 66
+V SY +E+V K G+ VA+V P+G GKST++ LL+ P G
Sbjct: 338 DDVSFSYD--NSR-QGVEDVSFEAKPGQTVAIVGPTGAGKSTLI---NLLQRVFDPQSGR 391
Query: 67 VIIANQLCNKLSDDKKSFLRCSKIGFVYQEHRLLMDFSVIENIIFPQI------IAGINH 120
++I ++ ++ LR + I V+Q+ L + S+ +NI ++ +
Sbjct: 392 ILIDGTDIRTVT---RASLRRN-IAVVFQD-AGLFNRSIEDNI---RVGRPDATDEEMRA 443
Query: 121 KTAYQRAMDLL--SYMDMSQYANRRSSDISGGEQQRVAICRAIANKPLIILADEPTGNLD 178
+A D + R +SGGE+QR+AI RA+ P I++ DE T LD
Sbjct: 444 AAERAQAHDFIERKPDGYDTVVGERGRQLSGGERQRLAIARALLKDPPILILDEATSALD 503
Query: 179 LKTAQQV 185
++T +V
Sbjct: 504 VETEAKV 510
>gnl|CDD|184582 PRK14236, PRK14236, phosphate transporter ATP-binding protein;
Provisional.
Length = 272
Score = 64.7 bits (158), Expect = 2e-11
Identities = 59/216 (27%), Positives = 97/216 (44%), Gaps = 63/216 (29%)
Query: 25 VLENVHLSLKKGEIVALVSPSGTGKSTIL-------------HIAGLLEVPDQGNVIIAN 71
L ++ + + K + A + PSG GKST+L I G E+ G I
Sbjct: 40 ALFDISMRIPKNRVTAFIGPSGCGKSTLLRCFNRMNDLVDNCRIEG--EIRLDGQNIYDK 97
Query: 72 QLCNKLSDDKKSFLRCSKIGFVYQEHRLLMDF--SVIENIIFPQIIAGINHKTAYQRAMD 129
++ D R ++G V+Q F S+ EN+++ + GIN++ R +D
Sbjct: 98 KV------DVAELRR--RVGMVFQRPN---PFPKSIYENVVYGLRLQGINNR----RVLD 142
Query: 130 LLSYMDMSQYANRRSS--------------DISGGEQQRVAICRAIANKPLIILADEPTG 175
+ + + R ++ +SGG+QQR+ I RAIA +P ++L DEPT
Sbjct: 143 -----EAVERSLRGAALWDEVKDRLHENAFGLSGGQQQRLVIARAIAIEPEVLLLDEPTS 197
Query: 176 NLD-LKTA--QQVFSILK--YLVVRSGLAALIATHN 206
LD + T +++ + LK Y +V I THN
Sbjct: 198 ALDPISTLKIEELITELKSKYTIV-------IVTHN 226
>gnl|CDD|178750 PLN03211, PLN03211, ABC transporter G-25; Provisional.
Length = 659
Score = 64.1 bits (156), Expect = 3e-11
Identities = 51/166 (30%), Positives = 84/166 (50%), Gaps = 16/166 (9%)
Query: 36 GEIVALVSPSGTGKSTILH-IAGLLEVPDQGNVIIANQLCNKLSDDKKSFLRCSKIGFVY 94
GEI+A++ PSG+GKST+L+ +AG + QGN L N K+ R GFV
Sbjct: 94 GEILAVLGPSGSGKSTLLNALAGRI----QGNNFTGTILANNRKPTKQILKR---TGFVT 146
Query: 95 QEHRLLMDFSVIENIIFPQIIAGINHKTAYQR---AMDLLSYMDMSQYANRRSSD----- 146
Q+ L +V E ++F ++ T ++ A ++S + +++ N +
Sbjct: 147 QDDILYPHLTVRETLVFCSLLRLPKSLTKQEKILVAESVISELGLTKCENTIIGNSFIRG 206
Query: 147 ISGGEQQRVAICRAIANKPLIILADEPTGNLDLKTAQQVFSILKYL 192
ISGGE++RV+I + P +++ DEPT LD A ++ L L
Sbjct: 207 ISGGERKRVSIAHEMLINPSLLILDEPTSGLDATAAYRLVLTLGSL 252
>gnl|CDD|181939 PRK09544, znuC, high-affinity zinc transporter ATPase; Reviewed.
Length = 251
Score = 64.0 bits (156), Expect = 3e-11
Identities = 51/186 (27%), Positives = 91/186 (48%), Gaps = 28/186 (15%)
Query: 25 VLENVHLSLKKGEIVALVSPSGTGKSTILHIAGLLEVPDQGNVIIANQLCNKLSDDKKSF 84
VL +V L LK G+I+ L+ P+G GKST++ + L PD+G + +L
Sbjct: 19 VLSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLVAPDEGVIKRNGKL----------- 67
Query: 85 LRCSKIGFVYQEHRLLMDFSVIENII-FPQIIAGINHKTAYQRAMDLLSYMDMSQYA--- 140
+IG+V Q +L +D ++ + F ++ G + D+L + Q
Sbjct: 68 ----RIGYVPQ--KLYLDTTLPLTVNRFLRLRPGT-------KKEDILPALKRVQAGHLI 114
Query: 141 NRRSSDISGGEQQRVAICRAIANKPLIILADEPTGNLDLKTAQQVFSILKYLVVRSGLAA 200
+ +SGGE QRV + RA+ N+P +++ DEPT +D+ ++ ++ L A
Sbjct: 115 DAPMQKLSGGETQRVLLARALLNRPQLLVLDEPTQGVDVNGQVALYDLIDQLRRELDCAV 174
Query: 201 LIATHN 206
L+ +H+
Sbjct: 175 LMVSHD 180
>gnl|CDD|184583 PRK14237, PRK14237, phosphate transporter ATP-binding protein;
Provisional.
Length = 267
Score = 64.0 bits (156), Expect = 3e-11
Identities = 58/203 (28%), Positives = 93/203 (45%), Gaps = 27/203 (13%)
Query: 26 LENVHLSLKKGEIVALVSPSGTGKSTILHIAGLLEVPDQ-------GNVIIANQLCNKLS 78
++ + + +K +I AL+ PSG+GKST L L + D G ++ N+
Sbjct: 36 IKGIDMQFEKNKITALIGPSGSGKSTYLR--SLNRMNDTIDIARVTGQILYRGIDINR-- 91
Query: 79 DDKKSFLRCSKIGFVYQEHRLLMDFSVIENIIFPQIIAGINHKTAYQRAMDLLSYMDMSQ 138
+ + IG V+Q S+ ENI F AG+ K + +D + + Q
Sbjct: 92 KEINVYEMRKHIGMVFQRPNPFAK-SIYENITFALERAGVKDK----KVLDEIVETSLKQ 146
Query: 139 YA---------NRRSSDISGGEQQRVAICRAIANKPLIILADEPTGNLDLKTAQQVFSIL 189
A ++ + +SGG+QQR+ I RAIA KP I+L DEP LD + Q+ +
Sbjct: 147 AALWDQVKDDLHKSALTLSGGQQQRLCIARAIAVKPDILLMDEPASALDPISTMQLEETM 206
Query: 190 KYLVVRSGLAALIATHNHDLASQ 212
L + +I THN A++
Sbjct: 207 FEL--KKNYTIIIVTHNMQQAAR 227
>gnl|CDD|172741 PRK14253, PRK14253, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 249
Score = 63.7 bits (155), Expect = 4e-11
Identities = 55/201 (27%), Positives = 95/201 (47%), Gaps = 22/201 (10%)
Query: 26 LENVHLSLKKGEIVALVSPSGTGKSTILH--------IAGLLEVPDQGNVIIANQLCNKL 77
L++++L + ++ AL+ PSG GKST+L I G V G + + + +
Sbjct: 19 LKSINLPIPARQVTALIGPSGCGKSTLLRCLNRMNDLIEG---VKITGKLTMDGE--DIY 73
Query: 78 SDDKKSFLRCSKIGFVYQEHRLLMDFSVIENIIFPQIIAGINHKTAYQRAMD--LLSYMD 135
+ + LR K+G V+Q+ S+ EN+ + GI K ++ L
Sbjct: 74 GNIDVADLRI-KVGMVFQKPNPF-PMSIYENVAYGLRAQGIKDKKVLDEVVERSLRGAAL 131
Query: 136 MSQYANRRSS---DISGGEQQRVAICRAIANKPLIILADEPTGNLDLKTAQQVFSILKYL 192
+ +R S +SGG+QQR+ I R IA +P +IL DEPT LD ++ +++ L
Sbjct: 132 WDEVKDRLKSHAFGLSGGQQQRLCIARTIAMEPDVILMDEPTSALDPIATHKIEELMEEL 191
Query: 193 VVRSGLAALIATHNHDLASQM 213
+ +I TH+ A ++
Sbjct: 192 --KKNYTIVIVTHSMQQARRI 210
>gnl|CDD|183084 PRK11308, dppF, dipeptide transporter ATP-binding subunit;
Provisional.
Length = 327
Score = 63.8 bits (156), Expect = 4e-11
Identities = 54/187 (28%), Positives = 95/187 (50%), Gaps = 9/187 (4%)
Query: 26 LENVHLSLKKGEIVALVSPSGTGKSTILHIAGLLEVPDQGNVIIANQLCNKLSDDKKSFL 85
L+ V +L++G+ +A+V SG GKST+ + ++E P G + Q K + + L
Sbjct: 31 LDGVSFTLERGKTLAVVGESGCGKSTLARLLTMIETPTGGELYYQGQDLLKADPEAQKLL 90
Query: 86 RCSKIGFVYQE-HRLLMDFSVIENIIFPQIIAGINHK-TAYQRAMDLLSYMDM----SQY 139
R KI V+Q + L + I+ ++ IN +A +R L+ M ++
Sbjct: 91 R-QKIQIVFQNPYGSLNPRKKVGQILEEPLL--INTSLSAAERREKALAMMAKVGLRPEH 147
Query: 140 ANRRSSDISGGEQQRVAICRAIANKPLIILADEPTGNLDLKTAQQVFSILKYLVVRSGLA 199
+R SGG++QR+AI RA+ P +++ADEP LD+ QV +++ L GL+
Sbjct: 148 YDRYPHMFSGGQRQRIAIARALMLDPDVVVADEPVSALDVSVQAQVLNLMMDLQQELGLS 207
Query: 200 ALIATHN 206
+ +H+
Sbjct: 208 YVFISHD 214
>gnl|CDD|184596 PRK14267, PRK14267, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 253
Score = 63.3 bits (154), Expect = 4e-11
Identities = 54/203 (26%), Positives = 98/203 (48%), Gaps = 21/203 (10%)
Query: 25 VLENVHLSLKKGEIVALVSPSGTGKSTILHIAG-LLEVPD----QGNVIIANQLCNKLSD 79
V++ V L + + + AL+ PSG GKST+L LLE+ + +G V + + N S
Sbjct: 19 VIKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLLELNEEARVEGEVRLFGR--NIYSP 76
Query: 80 DKKSFLRCSKIGFVYQEHRLLMDFSVIENIIFPQIIAGINHKTAYQRAMDLLSYMDMSQY 139
D ++G V+Q ++ +N+ I +N ++ +D + +
Sbjct: 77 DVDPIEVRREVGMVFQYPNPFPHLTIYDNV---AIGVKLNGLVKSKKELDERVEWALKKA 133
Query: 140 A---------NRRSSDISGGEQQRVAICRAIANKPLIILADEPTGNLDLKTAQQVFSILK 190
A N S++SGG++QR+ I RA+A KP I+L DEPT N+D ++ +L
Sbjct: 134 ALWDEVKDRLNDYPSNLSGGQRQRLVIARALAMKPKILLMDEPTANIDPVGTAKIEELL- 192
Query: 191 YLVVRSGLAALIATHNHDLASQM 213
++ ++ TH+ A+++
Sbjct: 193 -FELKKEYTIVLVTHSPAQAARV 214
>gnl|CDD|172757 PRK14269, PRK14269, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 246
Score = 63.5 bits (154), Expect = 5e-11
Identities = 55/198 (27%), Positives = 97/198 (48%), Gaps = 32/198 (16%)
Query: 26 LENVHLSLKKGEIVALVSPSGTGKSTILH-----------IAGLLEVPDQGNVIIANQLC 74
L ++++ +++ +I AL+ SG GKST L I GL+E+ + + NQ
Sbjct: 18 LFDINMQIEQNKITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEGKD---VKNQDV 74
Query: 75 NKLSDDKKSFLRCSKIGFVYQEHRLLMDFSVIENIIFPQIIAGINHKTAYQRAM--DLLS 132
L +G V+Q+ + + S+ ENI + + G+ + A+ D L
Sbjct: 75 VALR---------KNVGMVFQQPNVFVK-SIYENISYAPKLHGMIKNKDEEEALVVDCLQ 124
Query: 133 ----YMDMSQYANRRSSDISGGEQQRVAICRAIANKPLIILADEPTGNLDLKTAQQVFSI 188
+ ++ + + +SGG+QQR+ I RA+A KP ++L DEPT LD ++ + +
Sbjct: 125 KVGLFEEVKDKLKQNALALSGGQQQRLCIARALAIKPKLLLLDEPTSALDPISSGVIEEL 184
Query: 189 LKYLVVRSGLAALIATHN 206
LK L L+ ++ THN
Sbjct: 185 LKEL--SHNLSMIMVTHN 200
>gnl|CDD|172749 PRK14261, PRK14261, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 253
Score = 63.3 bits (154), Expect = 5e-11
Identities = 59/230 (25%), Positives = 98/230 (42%), Gaps = 35/230 (15%)
Query: 1 MDSAEVLLLQNVKHSYRQVGKPFPVLENVHLSLKKGEIVALVSPSGTGKSTILHIAGLLE 60
M +L +N+ Y + L ++ +S+ K + AL+ PSG GKST+L +
Sbjct: 1 MTMEIILSTKNLNLWYGEK----HALYDITISIPKNRVTALIGPSGCGKSTLLRCFNRMN 56
Query: 61 --VPD---QGNVIIANQLCNKLSDDKKSFLRCSKIGFVYQEHRLLMDFSVIENIIFPQII 115
+P G+++ + D + R KIG V+Q S+ EN+ + I
Sbjct: 57 DLIPGCRITGDILYNGENIMDSGADVVALRR--KIGMVFQRPNPFPK-SIYENVAYGPRI 113
Query: 116 AGINHKTAYQRAMDLLSYMDMSQYA---------NRRSSDISGGEQQRVAICRAIANKPL 166
G +K + +D + + A + + +SGG+QQR+ I R +A P
Sbjct: 114 HGEKNK----KTLDTIVEKSLKGAALWDEVKDRLHDSALSLSGGQQQRLCIARTLAVNPE 169
Query: 167 IILADEPTGNLD----LKTAQQVFSILKYLVVRSGLAALIATHNHDLASQ 212
+IL DEP LD K + + K V +I THN A++
Sbjct: 170 VILMDEPCSALDPIATAKIEDLIEDLKKEYTV------IIVTHNMQQAAR 213
>gnl|CDD|184590 PRK14249, PRK14249, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 251
Score = 62.8 bits (152), Expect = 6e-11
Identities = 54/204 (26%), Positives = 99/204 (48%), Gaps = 27/204 (13%)
Query: 25 VLENVHLSLKKGEIVALVSPSGTGKSTILHIAGLLEVPD-------QGNVIIANQLCNKL 77
VL+N+++ + +I A++ PSG GKST+L L + D +G V++ N+ N
Sbjct: 19 VLKNINMDFPERQITAIIGPSGCGKSTLLR--ALNRMNDIVSGARLEGAVLLDNE--NIY 74
Query: 78 SDDKKSFLRCSKIGFVYQEHRLLMDFSVIENIIFPQIIAGIN---------HKTAYQRAM 128
S + ++G V+Q+ S+ +N+ F + G K+ Q A+
Sbjct: 75 SPNLDVVNLRKRVGMVFQQPNPFPK-SIFDNVAFGPRMLGTTAQSRLDEVVEKSLRQAAL 133
Query: 129 DLLSYMDMSQYANRRSSDISGGEQQRVAICRAIANKPLIILADEPTGNLDLKTAQQVFSI 188
+ ++ ++ +SGG+QQR+ I R +A +P +IL DEP LD + ++ +
Sbjct: 134 ----WDEVKDNLHKSGLALSGGQQQRLCIARVLAIEPEVILMDEPCSALDPVSTMRIEEL 189
Query: 189 LKYLVVRSGLAALIATHNHDLASQ 212
++ L +A I THN A++
Sbjct: 190 MQELKQNYTIA--IVTHNMQQAAR 211
>gnl|CDD|132561 TIGR03522, GldA_ABC_ATP, gliding motility-associated ABC
transporter ATP-binding subunit GldA. Members of this
protein family are exclusive to the Bacteroidetes phylum
(previously Cytophaga-Flavobacteria-Bacteroides). GldA
is an ABC transporter ATP-binding protein (pfam00005)
linked to a type of rapid surface gliding motility found
in certain Bacteroidetes, such as Flavobacterium
johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA
abolish the gliding phenotype. Gliding motility appears
closely linked to chitin utilization in the model
species Flavobacterium johnsoniae. Bacteroidetes with
members of this protein family appear to have all of the
genes associated with gliding motility.
Length = 301
Score = 62.9 bits (153), Expect = 7e-11
Identities = 44/155 (28%), Positives = 79/155 (50%), Gaps = 7/155 (4%)
Query: 25 VLENVHLSLKKGEIVALVSPSGTGKSTILHIAGLLEVPDQGNVIIANQLCNKLSDDKKSF 84
L+ V +KG IV + P+G GKST + I PD G+V Q+C D ++
Sbjct: 17 ALDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITGYLPPDSGSV----QVCG--EDVLQNP 70
Query: 85 LRCSK-IGFVYQEHRLLMDFSVIENIIFPQIIAGINHKTAYQRAMDLLSYMDMSQYANRR 143
+ IG++ + + L +D V E + F I G+ + QR +++ + + +++
Sbjct: 71 KEVQRNIGYLPEHNPLYLDMYVREYLQFIAGIYGMKGQLLKQRVEEMIELVGLRPEQHKK 130
Query: 144 SSDISGGEQQRVAICRAIANKPLIILADEPTGNLD 178
+S G +QRV + +A+ + P +++ DEPT LD
Sbjct: 131 IGQLSKGYRQRVGLAQALIHDPKVLILDEPTTGLD 165
>gnl|CDD|185049 PRK15093, PRK15093, antimicrobial peptide ABC transporter
ATP-binding protein; Provisional.
Length = 330
Score = 62.5 bits (152), Expect = 7e-11
Identities = 60/233 (25%), Positives = 113/233 (48%), Gaps = 23/233 (9%)
Query: 6 VLLLQNVKHSYRQVGKPFPVLENVHLSLKKGEIVALVSPSGTGKSTILH-IAGLLEVPDQ 64
+L ++N+ ++ ++ V ++L +GEI LV SG+GKS I I G+ + D
Sbjct: 3 LLDIRNLTIEFKTSDGWVKAVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGVTK--DN 60
Query: 65 GNVIIANQLCN-----KLSDDKKSFLRCSKIGFVYQEHRLLMDFSVIENI--IFPQIIAG 117
V + +LS ++ L + ++QE + +D S E + Q I G
Sbjct: 61 WRVTADRMRFDDIDLLRLSPRERRKLVGHNVSMIFQEPQSCLDPS--ERVGRQLMQNIPG 118
Query: 118 INHKTAY--------QRAMDLLSYMDMSQYANRRSS---DISGGEQQRVAICRAIANKPL 166
+K + +RA++LL + + + + S +++ GE Q+V I A+AN+P
Sbjct: 119 WTYKGRWWQRFGWRKRRAIELLHRVGIKDHKDAMRSFPYELTEGECQKVMIAIALANQPR 178
Query: 167 IILADEPTGNLDLKTAQQVFSILKYLVVRSGLAALIATHNHDLASQMDRQITI 219
+++ADEPT ++ T Q+F +L L + L+ +H+ + SQ +I +
Sbjct: 179 LLIADEPTNAMEPTTQAQIFRLLTRLNQNNNTTILLISHDLQMLSQWADKINV 231
>gnl|CDD|172733 PRK14245, PRK14245, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 250
Score = 62.7 bits (152), Expect = 8e-11
Identities = 52/208 (25%), Positives = 95/208 (45%), Gaps = 29/208 (13%)
Query: 23 FPVLENVHLSLKKGEIVALVSPSGTGKSTILHIAGLLE--VPD---QGNVIIANQLCNKL 77
F L+ + + +++ +VA + PSG GKST L + + +P +G + I + +
Sbjct: 16 FHALKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPATRLEGEIRIDGR---NI 72
Query: 78 SDDKKSFLRCSK-IGFVYQEHRLLMDFSVIENIIFPQIIAGIN---------HKTAYQRA 127
D K +G V+Q S+ EN+ + + G+ +T A
Sbjct: 73 YDKGVQVDELRKNVGMVFQRPNPFPK-SIFENVAYGLRVNGVKDNAFIRQRVEETLKGAA 131
Query: 128 M--DLLSYMDMSQYANRRSSDISGGEQQRVAICRAIANKPLIILADEPTGNLDLKTAQQV 185
+ ++ + S +A +SGG+QQR+ I RA+A P ++L DEP LD + +V
Sbjct: 132 LWDEVKDKLKESAFA------LSGGQQQRLCIARAMAVSPSVLLMDEPASALDPISTAKV 185
Query: 186 FSILKYLVVRSGLAALIATHNHDLASQM 213
++ L + +I THN A+++
Sbjct: 186 EELIHEL--KKDYTIVIVTHNMQQAARV 211
>gnl|CDD|182561 PRK10575, PRK10575, iron-hydroxamate transporter ATP-binding
subunit; Provisional.
Length = 265
Score = 62.5 bits (152), Expect = 9e-11
Identities = 61/226 (26%), Positives = 109/226 (48%), Gaps = 20/226 (8%)
Query: 9 LQNVKHSYRQVGKPFPVLENVHLSLKKGEIVALVSPSGTGKSTILHIAGLLEVPDQGNVI 68
L+NV S+R G+ +L + L+ G++ L+ +G+GKST+L + G + P +G ++
Sbjct: 14 LRNV--SFRVPGRT--LLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPPSEGEIL 69
Query: 69 IANQLCNKLSDDKKSFLRCSKIGFVYQEHRLLMDFSVIENII---FPQIIA----GINHK 121
+ Q K+F R K+ ++ Q+ +V E + +P A G +
Sbjct: 70 LDAQPLESW--SSKAFAR--KVAYLPQQLPAAEGMTVRELVAIGRYPWHGALGRFGAADR 125
Query: 122 TAYQRAMDLLSYMDMSQYANRRSSDISGGEQQRVAICRAIANKPLIILADEPTGNLDLKT 181
+ A+ L+ + A+R +SGGE+QR I +A +L DEPT LD+
Sbjct: 126 EKVEEAISLV---GLKPLAHRLVDSLSGGERQRAWIAMLVAQDSRCLLLDEPTSALDIAH 182
Query: 182 AQQVFSILKYLVVRSGLAALIATHNHDLASQM-DRQITIRDG-MIA 225
V +++ L GL + H+ ++A++ D + +R G MIA
Sbjct: 183 QVDVLALVHRLSQERGLTVIAVLHDINMAARYCDYLVALRGGEMIA 228
>gnl|CDD|184198 PRK13638, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 271
Score = 62.3 bits (151), Expect = 9e-11
Identities = 51/189 (26%), Positives = 98/189 (51%), Gaps = 8/189 (4%)
Query: 24 PVLENVHLSLKKGEIVALVSPSGTGKSTI-LHIAGLLEVPDQGNVIIANQLCNKLSDDKK 82
PVL+ ++L + LV +G GKST+ ++++GLL P +G V+ + L K+
Sbjct: 15 PVLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLR-PQKGAVLWQGK---PLDYSKR 70
Query: 83 SFLRC-SKIGFVYQEHRLLMDFSVIE-NIIFPQIIAGINHKTAYQRAMDLLSYMDMSQYA 140
L ++ V+Q+ + ++ I+ +I F G+ +R + L+ +D +
Sbjct: 71 GLLALRQQVATVFQDPEQQIFYTDIDSDIAFSLRNLGVPEAEITRRVDEALTLVDAQHFR 130
Query: 141 NRRSSDISGGEQQRVAICRAIANKPLIILADEPTGNLDLKTAQQVFSILKYLVVRSGLAA 200
++ +S G+++RVAI A+ + +L DEPT LD Q+ +I++ +V G
Sbjct: 131 HQPIQCLSHGQKKRVAIAGALVLQARYLLLDEPTAGLDPAGRTQMIAIIRR-IVAQGNHV 189
Query: 201 LIATHNHDL 209
+I++H+ DL
Sbjct: 190 IISSHDIDL 198
>gnl|CDD|163431 TIGR03719, ABC_ABC_ChvD, ATP-binding cassette protein, ChvD family.
Members of this protein family have two copies of the
ABC transporter ATP-binding cassette, but are found
outside the common ABC transporter operon structure that
features integral membrane permease proteins and
substrate-binding proteins encoded next to the
ATP-binding cassette (ABC domain) protein. The member
protein ChvD from Agrobacterium tumefaciens was
identified as both a candidate to interact with VirB8,
based on yeast two-hybrid analysis, and as an apparent
regulator of VirG. The general function of this protein
family is unknown.
Length = 552
Score = 61.9 bits (151), Expect = 1e-10
Identities = 51/199 (25%), Positives = 84/199 (42%), Gaps = 54/199 (27%)
Query: 19 VGKPFP----VLENVHLSLKKGEIVALVSPSGTGKSTILHIAGLLEVPDQGNVIIANQLC 74
V K P +L+++ LS G + ++ +G GKST+L I ++ G A +
Sbjct: 10 VSKVVPPKKEILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFNGEARPAPGI- 68
Query: 75 NKLSDDKKSFLRCSKIGFVYQEHRLLMDFSVIENII------------FPQIIAGINHKT 122
K+G++ QE +L +V EN+ F +I A
Sbjct: 69 --------------KVGYLPQEPQLDPTKTVRENVEEGVAEIKDALDRFNEISAKFAEPD 114
Query: 123 AY-----------------QRAMDLLSYMDMSQYANR------RSSDISGGEQQRVAICR 159
A A DL ++++ A R + +SGGE++RVA+CR
Sbjct: 115 ADMDALLAEQAELQEIIDAADAWDLDRKLEIAMDALRCPPWDADVTKLSGGERRRVALCR 174
Query: 160 AIANKPLIILADEPTGNLD 178
+ +KP ++L DEPT +LD
Sbjct: 175 LLLSKPDMLLLDEPTNHLD 193
Score = 51.8 bits (125), Expect = 1e-07
Identities = 40/168 (23%), Positives = 74/168 (44%), Gaps = 37/168 (22%)
Query: 25 VLENVHLSLKKGEIVALVSPSGTGKSTILHIAGLLEVPDQGNVIIANQLCNKLS------ 78
+++++ L G IV ++ P+G GKST+ + E PD G + I + KL+
Sbjct: 337 LIDDLSFKLPPGGIVGVIGPNGAGKSTLFRMITGQEQPDSGTIKIGETV--KLAYVDQSR 394
Query: 79 ---DDKKSFLRCSKIGFVYQEHRLLMDFSVIENIIFP--QIIAGINHKTAYQRAMDLLSY 133
D K+ V++E +D + P + N K + Q+
Sbjct: 395 DALDPNKT---------VWEEISGGLDIIQLGKREVPSRAYVGRFNFKGSDQQ------- 438
Query: 134 MDMSQYANRRSSDISGGEQQRVAICRAIANKPLIILADEPTGNLDLKT 181
++ +SGGE+ RV + + + + ++L DEPT +LD++T
Sbjct: 439 --------KKVGQLSGGERNRVHLAKTLKSGGNVLLLDEPTNDLDVET 478
>gnl|CDD|183324 PRK11819, PRK11819, putative ABC transporter ATP-binding protein;
Reviewed.
Length = 556
Score = 60.5 bits (148), Expect = 3e-10
Identities = 54/200 (27%), Positives = 89/200 (44%), Gaps = 56/200 (28%)
Query: 19 VGKPFP----VLENVHLSLKKGEIVALVSPSGTGKSTILHI-AGLLEVPDQGNVIIANQL 73
V K P +L+++ LS G + ++ +G GKST+L I AG+ + +G A +
Sbjct: 12 VSKVVPPKKQILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGV-DKEFEGEARPAPGI 70
Query: 74 CNKLSDDKKSFLRCSKIGFVYQEHRLLMDFSVIENII------------FPQIIAGINHK 121
K+G++ QE +L + +V EN+ F +I A
Sbjct: 71 ---------------KVGYLPQEPQLDPEKTVRENVEEGVAEVKAALDRFNEIYAAYAEP 115
Query: 122 TAY-----------------QRAMDLLSYMDMSQYANR------RSSDISGGEQQRVAIC 158
A A DL S ++++ A R + + +SGGE++RVA+C
Sbjct: 116 DADFDALAAEQGELQEIIDAADAWDLDSQLEIAMDALRCPPWDAKVTKLSGGERRRVALC 175
Query: 159 RAIANKPLIILADEPTGNLD 178
R + KP ++L DEPT +LD
Sbjct: 176 RLLLEKPDMLLLDEPTNHLD 195
Score = 43.2 bits (103), Expect = 6e-05
Identities = 40/176 (22%), Positives = 70/176 (39%), Gaps = 57/176 (32%)
Query: 27 ENVHLSLKKGEIVALVSPSGTGKSTILH-IAGLLEVPDQGNVIIANQLCNKLSDDKKSFL 85
+++ SL G IV ++ P+G GKST+ I G E PD G + I +
Sbjct: 341 DDLSFSLPPGGIVGIIGPNGAGKSTLFKMITG-QEQPDSGTIKIGETV------------ 387
Query: 86 RCSKIGFVYQEHRLLMDFSVIENIIFPQIIAGINHKTAYQRAMDLLSYMDMSQYA----- 140
K+ +V Q R +D +KT ++ L + +
Sbjct: 388 ---KLAYVDQ-SRDALD----------------PNKTVWEEISGGLDIIKVGNREIPSRA 427
Query: 141 ------------NRRSSDISGGEQQRVAICRAI---ANKPLIILADEPTGNLDLKT 181
++ +SGGE+ R+ + + + N ++L DEPT +LD++T
Sbjct: 428 YVGRFNFKGGDQQKKVGVLSGGERNRLHLAKTLKQGGN---VLLLDEPTNDLDVET 480
>gnl|CDD|172744 PRK14256, PRK14256, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 252
Score = 59.6 bits (144), Expect = 6e-10
Identities = 52/198 (26%), Positives = 96/198 (48%), Gaps = 14/198 (7%)
Query: 26 LENVHLSLKKGEIVALVSPSGTGKSTILHIAGLLE--VPD---QGNVIIANQLCNKLSDD 80
+++V + + + A++ PSG GKST+L + VP G +++ + D
Sbjct: 20 VKDVSMDFPENSVTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKILLDDTDIYDRGVD 79
Query: 81 KKSFLRCSKIGFVYQEHRLLMDFSVIENIIFPQIIAG-INHKTAYQRAMDLLSYMDMSQY 139
S R ++G V+Q+ S+ +N+I + G +N A + L + +
Sbjct: 80 PVSIRR--RVGMVFQKPNPFPAMSIYDNVIAGYKLNGRVNRSEADEIVESSLKRVALWDE 137
Query: 140 ANRR----SSDISGGEQQRVAICRAIANKPLIILADEPTGNLDLKTAQQVFSILKYLVVR 195
R + ++SGG+QQR+ I R IA KP +IL DEP LD + ++ +++ L +
Sbjct: 138 VKDRLKSNAMELSGGQQQRLCIARTIAVKPEVILMDEPASALDPISTLKIEELIEELKEK 197
Query: 196 SGLAALIATHNHDLASQM 213
+ +I THN A+++
Sbjct: 198 YTI--IIVTHNMQQAARV 213
>gnl|CDD|172730 PRK14242, PRK14242, phosphate transporter ATP-binding protein;
Provisional.
Length = 253
Score = 59.4 bits (144), Expect = 7e-10
Identities = 51/195 (26%), Positives = 92/195 (47%), Gaps = 15/195 (7%)
Query: 22 PFPVLENVHLSLKKGEIVALVSPSGTGKSTILHIAGLLE--VPD---QGNVIIANQLCNK 76
F L ++ L ++ ++ AL+ PSG GKST L + +P +G +++ +
Sbjct: 18 DFQALHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGARVEGEILLDGENIYD 77
Query: 77 LSDDKKSFLRCSKIGFVYQEHRLLMDFSVIENIIFPQIIAGINHKTAY-QRAMDLLSYMD 135
D R ++G V+Q+ S+ EN+ + + G+ K +R L +
Sbjct: 78 PHVDVVELRR--RVGMVFQKPNPFPK-SIFENVAYGLRVNGVKDKAYLAERVERSLRHAA 134
Query: 136 MSQYANRRSSD----ISGGEQQRVAICRAIANKPLIILADEPTGNLDLKTAQQVFSILKY 191
+ R + +SGG+QQR+ I RA+A +P ++L DEP LD Q++ ++
Sbjct: 135 LWDEVKDRLHESALGLSGGQQQRLCIARALAVEPEVLLMDEPASALDPIATQKIEELIHE 194
Query: 192 LVVRSGLAALIATHN 206
L ++ +I THN
Sbjct: 195 L--KARYTIIIVTHN 207
>gnl|CDD|182443 PRK10418, nikD, nickel transporter ATP-binding protein NikD;
Provisional.
Length = 254
Score = 59.3 bits (144), Expect = 7e-10
Identities = 51/192 (26%), Positives = 86/192 (44%), Gaps = 17/192 (8%)
Query: 24 PVLENVHLSLKKGEIVALVSPSGTGKSTILHIAGLLEVPDQGNVIIANQLCNKLSDDKK- 82
P++ V L+L++G ++ALV SG+GKS L A L + G A ++ L D K
Sbjct: 17 PLVHGVSLTLQRGRVLALVGGSGSGKS--LTCAAALGILPAGVRQTAGRV---LLDGKPV 71
Query: 83 --SFLRCSKIGFVYQEHR------LLMDFSVIENIIFPQIIAGINHKTAYQRAMDLLSYM 134
LR KI + Q R M E + A++ +
Sbjct: 72 APCALRGRKIATIMQNPRSAFNPLHTMHTHARETC---LALGKPADDATLTAALEAVGLE 128
Query: 135 DMSQYANRRSSDISGGEQQRVAICRAIANKPLIILADEPTGNLDLKTAQQVFSILKYLVV 194
+ ++ ++SGG QR+ I A+ + I+ADEPT +LD+ ++ +L+ +V
Sbjct: 129 NAARVLKLYPFEMSGGMLQRMMIALALLCEAPFIIADEPTTDLDVVAQARILDLLESIVQ 188
Query: 195 RSGLAALIATHN 206
+ L L+ TH+
Sbjct: 189 KRALGMLLVTHD 200
>gnl|CDD|184595 PRK14266, PRK14266, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 250
Score = 59.2 bits (143), Expect = 8e-10
Identities = 49/202 (24%), Positives = 97/202 (48%), Gaps = 17/202 (8%)
Query: 25 VLENVHLSLKKGEIVALVSPSGTGKSTILHIAGLLE--VP---DQGNVIIANQLCNKLSD 79
+L+NV+L + K + AL+ PSG GKST + + +P +G++ + + D
Sbjct: 18 ILKNVNLDIPKNSVTALIGPSGCGKSTFIRTLNRMNDLIPGFRHEGHIYLDGV---DIYD 74
Query: 80 DKKSFLRC-SKIGFVYQEHRLLMDFSVIENIIFPQIIAGINHKTAYQRAMD-----LLSY 133
+ K+G V+Q+ S+ +N+ + I G + + + ++ +
Sbjct: 75 PAVDVVELRKKVGMVFQKPNPFPK-SIFDNVAYGLRIHGEDDEDFIEERVEESLKAAALW 133
Query: 134 MDMSQYANRRSSDISGGEQQRVAICRAIANKPLIILADEPTGNLDLKTAQQVFSILKYLV 193
++ ++ + +SGG+QQR+ I R IA P +IL DEP LD + ++ ++ L
Sbjct: 134 DEVKDKLDKSALGLSGGQQQRLCIARTIAVSPEVILMDEPCSALDPISTTKIEDLIHKL- 192
Query: 194 VRSGLAALIATHNHDLASQMDR 215
+ +I THN A+++ +
Sbjct: 193 -KEDYTIVIVTHNMQQATRVSK 213
>gnl|CDD|184129 PRK13543, PRK13543, cytochrome c biogenesis protein CcmA;
Provisional.
Length = 214
Score = 59.1 bits (143), Expect = 9e-10
Identities = 55/187 (29%), Positives = 93/187 (49%), Gaps = 21/187 (11%)
Query: 24 PVLENVHLSLKKGEIVALVSPSGTGKSTILHI-AGLLEVPDQGNVIIANQLCNKLSDDKK 82
PV + + GE + + +G GK+T+L + AGLL + G + I D K
Sbjct: 25 PVFGPLDFHVDAGEALLVQGDNGAGKTTLLRVLAGLLH-VESGQIQI----------DGK 73
Query: 83 SFLRCSKIGFV-YQEH--RLLMDFSVIENIIFPQIIAGINHKTAYQRAMDLLSYMDMSQY 139
+ R + F+ Y H L D S +EN+ F + G++ + A Q L+ + ++ Y
Sbjct: 74 TATRGDRSRFMAYLGHLPGLKADLSTLENLHF---LCGLHGRRAKQMPGSALAIVGLAGY 130
Query: 140 ANRRSSDISGGEQQRVAICRA-IANKPLIILADEPTGNLDLKTAQQVFSILKYLVVRSGL 198
+ +S G+++R+A+ R ++ PL +L DEP NLDL+ V ++ +R G
Sbjct: 131 EDTLVRQLSAGQKKRLALARLWLSPAPLWLL-DEPYANLDLEGITLVNRMIS-AHLRGGG 188
Query: 199 AALIATH 205
AAL+ TH
Sbjct: 189 AALVTTH 195
>gnl|CDD|172759 PRK14271, PRK14271, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 276
Score = 59.0 bits (142), Expect = 1e-09
Identities = 57/217 (26%), Positives = 100/217 (46%), Gaps = 25/217 (11%)
Query: 25 VLENVHLSLKKGEIVALVSPSGTGKSTILHIAGLLEVPDQGNVIIANQLCNKLS----DD 80
VL+ V + + +L+ P+G+GK+T L + G + L S D
Sbjct: 36 VLDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRMNDKVSGYRYSGDVLLGGRSIFNYRD 95
Query: 81 KKSFLRCSKIGFVYQEHRLLMDFSVIENIIFPQIIAGIN-HKTAYQR-----AMDLLSYM 134
F R ++G ++Q S+++N++ AG+ HK ++ A L+ +
Sbjct: 96 VLEFRR--RVGMLFQRPNPF-PMSIMDNVL-----AGVRAHKLVPRKEFRGVAQARLTEV 147
Query: 135 DMSQYANRRSSD----ISGGEQQRVAICRAIANKPLIILADEPTGNLDLKTAQQVFSILK 190
+ R SD +SGG+QQ + + R +A P ++L DEPT LD T +++ ++
Sbjct: 148 GLWDAVKDRLSDSPFRLSGGQQQLLCLARTLAVNPEVLLLDEPTSALDPTTTEKIEEFIR 207
Query: 191 YLVVRSGLAALIATHNHDLASQM-DRQITIRDGMIAD 226
L R L +I THN A+++ DR DG + +
Sbjct: 208 SLADR--LTVIIVTHNLAQAARISDRAALFFDGRLVE 242
>gnl|CDD|185037 PRK15079, PRK15079, oligopeptide ABC transporter ATP-binding
protein OppF; Provisional.
Length = 331
Score = 58.6 bits (142), Expect = 1e-09
Identities = 62/193 (32%), Positives = 93/193 (48%), Gaps = 20/193 (10%)
Query: 29 VHLSLKKGEIVALVSPSGTGKSTILH-IAGLLEVPDQGNVIIANQLCNKLSDDKKSFLRC 87
V L L +GE + +V SG GKST I GL++ D G V + + DD+ +R
Sbjct: 40 VTLRLYEGETLGVVGESGCGKSTFARAIIGLVKATD-GEVAWLGKDLLGMKDDEWRAVR- 97
Query: 88 SKIGFVYQEHRLLMDFSVIENIIFPQIIA---GINH-KTAYQRAMDLLSYMDMS-----Q 138
S I ++Q+ S+ + +IIA H K + Q D + M +
Sbjct: 98 SDIQMIFQDPLA----SLNPRMTIGEIIAEPLRTYHPKLSRQEVKDRVKAMMLKVGLLPN 153
Query: 139 YANRRSSDISGGEQQRVAICRAIANKPLIILADEPTGNLDLKTAQQVFSILKYLVVRSGL 198
NR + SGG+ QR+ I RA+ +P +I+ DEP LD+ QV ++L+ L GL
Sbjct: 154 LINRYPHEFSGGQCQRIGIARALILEPKLIICDEPVSALDVSIQAQVVNLLQQLQREMGL 213
Query: 199 AAL-IATHNHDLA 210
+ + IA HDLA
Sbjct: 214 SLIFIA---HDLA 223
>gnl|CDD|130031 TIGR00957, MRP_assoc_pro, multi drug resistance-associated protein
(MRP). This model describes multi drug
resistance-associated protein (MRP) in eukaryotes. The
multidrug resistance-associated protein is an integral
membrane protein that causes multidrug resistance when
overexpressed in mammalian cells. It belongs to ABC
transporter superfamily. The protein topology and
function was experimentally demonstrated by epitope
tagging and immunofluorescence. Insertion of tags in the
critical regions associated with drug efflux, abrogated
its function. The C-terminal domain seem to highly
conserved.
Length = 1522
Score = 57.6 bits (139), Expect = 2e-09
Identities = 51/212 (24%), Positives = 99/212 (46%), Gaps = 29/212 (13%)
Query: 24 PVLENVHLSLKKGEIVALVSPSGTGKSTILHIAGLLEVPD--QGNVIIANQLCNKLSDDK 81
P L + S+ +G +VA+V G GKS++L + LL D +G+V +
Sbjct: 652 PTLNGITFSIPEGALVAVVGQVGCGKSSLL--SALLAEMDKVEGHVHMK----------- 698
Query: 82 KSFLRCSKIGFVYQEHRLLMDFSVIENIIFPQIIAGINHKTAYQRAMDLLSYMDMSQYAN 141
+ +V Q+ + D S+ ENI+F + + ++ + A LL +++ +
Sbjct: 699 ------GSVAYVPQQAWIQND-SLRENILFGKALNEKYYQQVLE-ACALLPDLEILPSGD 750
Query: 142 R-----RSSDISGGEQQRVAICRAIANKPLIILADEPTGNLDLKTAQQVF-SILKYLVVR 195
R + ++SGG++QRV++ RA+ + I L D+P +D + +F ++ V
Sbjct: 751 RTEIGEKGVNLSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFEHVIGPEGVL 810
Query: 196 SGLAALIATHNHDLASQMDRQITIRDGMIADL 227
++ TH Q+D I + G I+++
Sbjct: 811 KNKTRILVTHGISYLPQVDVIIVMSGGKISEM 842
Score = 31.5 bits (71), Expect = 0.21
Identities = 25/84 (29%), Positives = 43/84 (51%), Gaps = 8/84 (9%)
Query: 146 DISGGEQQRVAICRAIANKPLIILADEPTGNLDLKTAQQVFSILKYLVVRSGL-AALIAT 204
++S G++Q V + RA+ K I++ DE T +DL+T + S +R+ + T
Sbjct: 1421 NLSVGQRQLVCLARALLRKTKILVLDEATAAVDLETDNLIQS-----TIRTQFEDCTVLT 1475
Query: 205 HNHDLASQMD--RQITIRDGMIAD 226
H L + MD R I + G +A+
Sbjct: 1476 IAHRLNTIMDYTRVIVLDKGEVAE 1499
>gnl|CDD|182996 PRK11147, PRK11147, ABC transporter ATPase component; Reviewed.
Length = 635
Score = 56.9 bits (138), Expect = 4e-09
Identities = 50/181 (27%), Positives = 86/181 (47%), Gaps = 29/181 (16%)
Query: 24 PVLENVHLSLKKGEIVALVSPSGTGKSTILHI-AGLLEVP-DQGNVIIANQL-CNKLSDD 80
P+L+N L ++ E V LV +G GKST++ I G EV D G +I L +L D
Sbjct: 17 PLLDNAELHIEDNERVCLVGRNGAGKSTLMKILNG--EVLLDDGRIIYEQDLIVARLQQD 74
Query: 81 KKSFLRCSKIGFV-------------YQE--HRLLMDFSVIENII--FPQIIAGINHKTA 123
+ + FV Y + H + D S E + ++ ++H
Sbjct: 75 PPRNVEGTVYDFVAEGIEEQAEYLKRYHDISHLVETDPS--EKNLNELAKLQEQLDHHNL 132
Query: 124 YQ---RAMDLLSYMDMSQYANRRSSDISGGEQQRVAICRAIANKPLIILADEPTGNLDLK 180
+Q R ++L+ + + + S +SGG ++ A+ RA+ + P ++L DEPT +LD++
Sbjct: 133 WQLENRINEVLAQLGLD--PDAALSSLSGGWLRKAALGRALVSNPDVLLLDEPTNHLDIE 190
Query: 181 T 181
T
Sbjct: 191 T 191
Score = 34.9 bits (81), Expect = 0.016
Identities = 44/158 (27%), Positives = 76/158 (48%), Gaps = 37/158 (23%)
Query: 35 KGEIVALVSPSGTGKSTILHIA-GLLEVPDQGNVIIANQLCNKLSDDKKSFLRC-SKIGF 92
+G+ +AL+ P+G GK+T+L + G L+ D G + C +K+
Sbjct: 344 RGDKIALIGPNGCGKTTLLKLMLGQLQ-ADSGRI------------------HCGTKLEV 384
Query: 93 VY-QEHRLLMD--FSVIENIIFPQIIAGINHKTAYQRAMDLLSYMDMSQYANRRS----S 145
Y +HR +D +V++N+ G R +L Y+ + +R+
Sbjct: 385 AYFDQHRAELDPEKTVMDNLA-----EGKQEVMVNGRPRHVLGYLQDFLFHPKRAMTPVK 439
Query: 146 DISGGEQQRVAICRAIANKP--LIILADEPTGNLDLKT 181
+SGGE+ R+ + R + KP L+IL DEPT +LD++T
Sbjct: 440 ALSGGERNRLLLAR-LFLKPSNLLIL-DEPTNDLDVET 475
>gnl|CDD|179632 PRK03695, PRK03695, vitamin B12-transporter ATPase; Provisional.
Length = 248
Score = 56.5 bits (137), Expect = 5e-09
Identities = 54/213 (25%), Positives = 85/213 (39%), Gaps = 72/213 (33%)
Query: 32 SLKKGEIVALVSPSGTGKSTILH-IAGLLEVPDQGNVIIANQLCNKLSDDKKSFLRCSKI 90
++ GEI+ LV P+G GKST+L +AGLL P G++ A Q S + + R
Sbjct: 18 EVRAGEILHLVGPNGAGKSTLLARMAGLL--PGSGSIQFAGQPLEAWSAAELARHRA--- 72
Query: 91 GFVYQEHRLLMDFSVIENIIFPQIIAGINHKTAYQRAMDLLSYMDMSQYANRRSSDI--- 147
++ Q+ AM + Y+ + Q R+ +
Sbjct: 73 -YLSQQQTPPF-------------------------AMPVFQYLTLHQPDKTRTEAVASA 106
Query: 148 ---------------------SGGEQQRV---AICRAI--ANKP---LIILADEPTGNLD 178
SGGE QRV A+ + P L++L DEP +LD
Sbjct: 107 LNEVAEALGLDDKLGRSVNQLSGGEWQRVRLAAVVLQVWPDINPAGQLLLL-DEPMNSLD 165
Query: 179 LKTAQQV--FSILKYLVVRSGLAALIATHNHDL 209
+ AQQ +L L + G+A +++ +HDL
Sbjct: 166 V--AQQAALDRLLSEL-CQQGIAVVMS--SHDL 193
>gnl|CDD|184587 PRK14241, PRK14241, phosphate transporter ATP-binding protein;
Provisional.
Length = 258
Score = 56.7 bits (137), Expect = 5e-09
Identities = 55/209 (26%), Positives = 99/209 (47%), Gaps = 24/209 (11%)
Query: 23 FPVLENVHLSLKKGEIVALVSPSGTGKSTILH-IAGLLEV-PD---QGNVIIANQLCNKL 77
F +E+V+L+++ + A + PSG GKST+L + + EV P +G V++ +
Sbjct: 17 FHAVEDVNLNIEPRSVTAFIGPSGCGKSTVLRTLNRMHEVIPGARVEGEVLLDGEDLYGP 76
Query: 78 SDDKKSFLRCSKIGFVYQEHRLLMDFSVIENIIFPQIIAGI--NHKTAYQRAMDLLSYM- 134
D + R IG V+Q S+ +N++ AG+ N + +L+
Sbjct: 77 GVDPVAVRR--TIGMVFQRPNPFPTMSIRDNVV-----AGLKLNGVRNKKDLDELVEKSL 129
Query: 135 -------DMSQYANRRSSDISGGEQQRVAICRAIANKPLIILADEPTGNLDLKTAQQVFS 187
++ ++ +SGG+QQR+ I RAIA +P ++L DEP LD + +
Sbjct: 130 RGANLWNEVKDRLDKPGGGLSGGQQQRLCIARAIAVEPDVLLMDEPCSALDPISTLAIED 189
Query: 188 ILKYLVVRSGLAALIATHNHDLASQMDRQ 216
++ L + +I THN A+++ Q
Sbjct: 190 LINEL--KQDYTIVIVTHNMQQAARVSDQ 216
>gnl|CDD|182336 PRK10253, PRK10253, iron-enterobactin transporter ATP-binding
protein; Provisional.
Length = 265
Score = 56.1 bits (135), Expect = 8e-09
Identities = 58/210 (27%), Positives = 95/210 (45%), Gaps = 19/210 (9%)
Query: 25 VLENVHLSLKKGEIVALVSPSGTGKSTILHIAGLLEVPDQGNVIIANQLCNKLSDDKKSF 84
V EN+ + + G A++ P+G GKST+L L P G+V + + + K
Sbjct: 22 VAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPAHGHVWLDGEHIQHYA--SKEV 79
Query: 85 LRCSKIGFVYQEHRLLMDFSVIENII---FP-QIIAGINHKTAYQRAMDLLSYMDMSQYA 140
R +IG + Q D +V E + +P Q + K + + ++ A
Sbjct: 80 AR--RIGLLAQNATTPGDITVQELVARGRYPHQPLFTRWRKEDEEAVTKAMQATGITHLA 137
Query: 141 NRRSSDISGGEQQRVAICRAIANKPLIILADEPTGNLDLKTAQQVFSILKYLVVRSG--L 198
++ +SGG++QR I +A + I+L DEPT LD+ + +L L G L
Sbjct: 138 DQSVDTLSGGQRQRAWIAMVLAQETAIMLLDEPTTWLDISHQIDLLELLSELNREKGYTL 197
Query: 199 AALIATHNHDLASQMDRQ----ITIRDGMI 224
AA++ HDL +Q R I +R+G I
Sbjct: 198 AAVL----HDL-NQACRYASHLIALREGKI 222
>gnl|CDD|172751 PRK14263, PRK14263, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 261
Score = 55.8 bits (134), Expect = 9e-09
Identities = 54/197 (27%), Positives = 87/197 (44%), Gaps = 23/197 (11%)
Query: 23 FPVLENVHLSLKKGEIVALVSPSGTGKSTILHIAGLLEVPD-------QGNVIIANQLCN 75
F + + H+ ++K EI + PSG GKST+L L + D +G+V Q
Sbjct: 21 FMAVRDSHVPIRKNEITGFIGPSGCGKSTVLR--SLNRMNDLVKGFRFEGHVHFLGQDVY 78
Query: 76 KLSDDKKSFLRCSKIGFVYQEHRLLMDFSVIENIIFPQII------AGINHKTAYQRAMD 129
D R IG V+Q+ S+ +N+ F + G K A Q A
Sbjct: 79 GKGVDPVVVRR--YIGMVFQQPNPF-SMSIFDNVAFGLRLNRYKGDLGDRVKHALQGAA- 134
Query: 130 LLSYMDMSQYANRRSSDISGGEQQRVAICRAIANKPLIILADEPTGNLDLKTAQQVFSIL 189
+ ++ +SGG+QQR+ I RAIA +P ++L DEP LD ++V ++
Sbjct: 135 --LWDEVKDKLKVSGLSLSGGQQQRLCIARAIATEPEVLLLDEPCSALDPIATRRVEELM 192
Query: 190 KYLVVRSGLAALIATHN 206
+ ++ + THN
Sbjct: 193 --VELKKDYTIALVTHN 207
>gnl|CDD|184581 PRK14235, PRK14235, phosphate transporter ATP-binding protein;
Provisional.
Length = 267
Score = 54.4 bits (131), Expect = 2e-08
Identities = 58/202 (28%), Positives = 92/202 (45%), Gaps = 36/202 (17%)
Query: 26 LENVHLSLKKGEIVALVSPSGTGKSTILHIAGLLEVPD-------QGNVIIANQLCNKLS 78
L +V L + + + A + PSG GKST L L + D G + + +
Sbjct: 35 LFDVDLDIPEKTVTAFIGPSGCGKSTFLRC--LNRMNDTIDGCRVTGKITLDGEDIYDPR 92
Query: 79 DDKKSFLRCSKIGFVYQEHRLLMDF--SVIENIIF-PQIIAGINHKTAYQRAMDLLSYMD 135
D LR +++G V+Q+ F S+ EN+ + P+I H A +A +L ++
Sbjct: 93 LDVVE-LR-ARVGMVFQKPN---PFPKSIYENVAYGPRI-----HGLARSKA-ELDEIVE 141
Query: 136 MS--------QYANRRS---SDISGGEQQRVAICRAIANKPLIILADEPTGNLDLKTAQQ 184
S + +R + +SGG+QQR+ I RAIA P +IL DEP LD +
Sbjct: 142 TSLRKAGLWEEVKDRLHEPGTGLSGGQQQRLCIARAIAVSPEVILMDEPCSALDPIATAK 201
Query: 185 VFSILKYLVVRSGLAALIATHN 206
V ++ L R +I TH+
Sbjct: 202 VEELIDEL--RQNYTIVIVTHS 221
>gnl|CDD|181888 PRK09473, oppD, oligopeptide transporter ATP-binding component;
Provisional.
Length = 330
Score = 54.3 bits (131), Expect = 3e-08
Identities = 52/190 (27%), Positives = 95/190 (50%), Gaps = 21/190 (11%)
Query: 32 SLKKGEIVALVSPSGTGKS-TILHIAGLLEVPDQGNVIIA-------NQLCNKLSDDKKS 83
SL+ GE + +V SG+GKS T + GLL N I ++ N L + + +
Sbjct: 38 SLRAGETLGIVGESGSGKSQTAFALMGLL----AANGRIGGSATFNGREILN-LPEKELN 92
Query: 84 FLRCSKIGFVYQEHRLLMD--FSVIENII-FPQIIAGINHKTAYQRAMDLLSYMDMSQYA 140
LR +I ++Q+ ++ V E ++ + G++ A++ ++ +L + M + A
Sbjct: 93 KLRAEQISMIFQDPMTSLNPYMRVGEQLMEVLMLHKGMSKAEAFEESVRMLDAVKMPE-A 151
Query: 141 NRRSS----DISGGEQQRVAICRAIANKPLIILADEPTGNLDLKTAQQVFSILKYLVVRS 196
+R + SGG +QRV I A+ +P +++ADEPT LD+ Q+ ++L L
Sbjct: 152 RKRMKMYPHEFSGGMRQRVMIAMALLCRPKLLIADEPTTALDVTVQAQIMTLLNELKREF 211
Query: 197 GLAALIATHN 206
A ++ TH+
Sbjct: 212 NTAIIMITHD 221
>gnl|CDD|184589 PRK14248, PRK14248, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 268
Score = 53.4 bits (128), Expect = 4e-08
Identities = 49/200 (24%), Positives = 90/200 (45%), Gaps = 13/200 (6%)
Query: 26 LENVHLSLKKGEIVALVSPSGTGKSTILH----IAGLLEVPDQGNVIIANQLCNKLSDDK 81
+ ++ + ++K + AL+ PSG GKST L + L+ I+ L N L +
Sbjct: 37 VNDISMDIEKHAVTALIGPSGCGKSTFLRSINRMNDLIPSARSEGEILYEGL-NILDSNI 95
Query: 82 KSFLRCSKIGFVYQEHRLLMDFSVIENIIFPQIIAGINHKTAYQRAMD-----LLSYMDM 136
+IG V+Q+ S+ NI AG K+ ++ + ++
Sbjct: 96 NVVNLRREIGMVFQKPNPFPK-SIYNNITHALKYAGERRKSVLDEIVEESLTKAALWDEV 154
Query: 137 SQYANRRSSDISGGEQQRVAICRAIANKPLIILADEPTGNLDLKTAQQVFSILKYLVVRS 196
+ + +SGG+QQR+ I R +A KP ++L DEP LD + ++ ++ L +
Sbjct: 155 KDRLHSSALSLSGGQQQRLCIARTLAMKPAVLLLDEPASALDPISNAKIEELITEL--KE 212
Query: 197 GLAALIATHNHDLASQMDRQ 216
+ +I THN A ++ +
Sbjct: 213 EYSIIIVTHNMQQALRVSDR 232
>gnl|CDD|162277 TIGR01271, CFTR_protein, cystic fibrosis transmembrane conductor
regulator (CFTR). The model describes the cystis
fibrosis transmembrane conductor regulator (CFTR) in
eukaryotes. The principal role of this protein is
chloride ion conductance. The protein is predicted to
consist of 12 transmembrane domains. Mutations or
lesions in the genetic loci have been linked to the
aetiology of asthma, bronchiectasis, chronic obstructive
pulmonary disease etc. Disease-causing mutations have
been studied by 36Cl efflux assays in vitro cell
cultures and electrophysiology, all of which point to
the impairment of chloride channel stability and not the
biosynthetic processing per se.
Length = 1490
Score = 53.4 bits (128), Expect = 4e-08
Identities = 44/175 (25%), Positives = 89/175 (50%), Gaps = 38/175 (21%)
Query: 24 PVLENVHLSLKKGEIVALVSPSGTGKSTILH-IAGLLEVPDQGNVIIANQLCNKLSDDKK 82
PVL+N+ L+KG+++A+ +G+GKS++L I G LE P +G + + ++
Sbjct: 440 PVLKNISFKLEKGQLLAVAGSTGSGKSSLLMMIMGELE-PSEGKIKHSGRI--------- 489
Query: 83 SFLRCSKIGFVYQEHRLLMDFSVIENIIFPQIIAGINHK----TAYQRAMDLLSYMDMSQ 138
SF + ++ M ++ +NIIF G+++ T+ +A L D++
Sbjct: 490 SF--SPQTSWI-------MPGTIKDNIIF-----GLSYDEYRYTSVIKACQLEE--DIAL 533
Query: 139 YANRRSS-------DISGGEQQRVAICRAIANKPLIILADEPTGNLDLKTAQQVF 186
+ + + +SGG++ R+++ RA+ + L D P +LD+ T +++F
Sbjct: 534 FPEKDKTVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFTHLDVVTEKEIF 588
Score = 34.5 bits (79), Expect = 0.025
Identities = 17/44 (38%), Positives = 27/44 (61%)
Query: 147 ISGGEQQRVAICRAIANKPLIILADEPTGNLDLKTAQQVFSILK 190
+S G +Q + + R+I +K I+L DEP+ +LD T Q + LK
Sbjct: 1354 LSNGHKQLMCLARSILSKAKILLLDEPSAHLDPVTLQIIRKTLK 1397
>gnl|CDD|184037 PRK13409, PRK13409, putative ATPase RIL; Provisional.
Length = 590
Score = 53.3 bits (129), Expect = 5e-08
Identities = 52/215 (24%), Positives = 89/215 (41%), Gaps = 53/215 (24%)
Query: 33 LKKGEIVALVSPSGTGKSTILHI-AGLLEVPDQGNVIIANQLCNKLSDDKKSFLRCSKIG 91
+ +GE++ +V P+G GK+T + AG+L+ PD+G V K+S K +++ G
Sbjct: 362 IYEGEVIGIVGPNGIGKTTFAKLLAGVLK-PDEGEVDPEL----KISY-KPQYIKPDYDG 415
Query: 92 FVYQEHRLLM----DFSVIENIIFPQIIAGINHKTAYQRAMDLLSYMDMSQYANRRSSDI 147
V LL D + +II + + + + D+
Sbjct: 416 TVED---LLRSITDDLG--SSYYKSEIIKPLQLERLLDKNVK----------------DL 454
Query: 148 SGGEQQRVAICRAIANKPLIILADEPTGNLDLKTAQQVFSILKYLVVRSGLAALIATHN- 206
SGGE QRVAI ++ + L DEP+ +LD++ V ++ + AL+ H+
Sbjct: 455 SGGELQRVAIAACLSRDADLYLLDEPSAHLDVEQRLAVAKAIRRIAEEREATALVVDHDI 514
Query: 207 --HDLASQMDRQI----------------TIRDGM 223
D S DR + +R+GM
Sbjct: 515 YMIDYIS--DRLMVFEGEPGKHGHASGPMDMREGM 547
Score = 49.8 bits (120), Expect = 6e-07
Identities = 36/162 (22%), Positives = 72/162 (44%), Gaps = 25/162 (15%)
Query: 33 LKKGEIVALVSPSGTGKSTILHI-AGLLEVPDQGNV--------II----ANQLCNKLSD 79
K+G++ ++ P+G GK+T + I +G L +P+ G+ ++ +L N
Sbjct: 96 PKEGKVTGILGPNGIGKTTAVKILSGEL-IPNLGDYEEEPSWDEVLKRFRGTELQNYFKK 154
Query: 80 DKKSFLRCS-KIGFVYQEHRLLMDFSVIENIIFPQIIAGINHKTAYQRAMDLLSYMDMSQ 138
++ K +V ++ V E ++ ++ + +++ + +
Sbjct: 155 LYNGEIKVVHKPQYVDLIPKVF-KGKVRE------LLKKVDERGKLD---EVVERLGLEN 204
Query: 139 YANRRSSDISGGEQQRVAICRAIANKPLIILADEPTGNLDLK 180
+R S++SGGE QRVAI A+ DEPT LD++
Sbjct: 205 ILDRDISELSGGELQRVAIAAALLRDADFYFFDEPTSYLDIR 246
>gnl|CDD|184132 PRK13547, hmuV, hemin importer ATP-binding subunit; Provisional.
Length = 272
Score = 52.9 bits (127), Expect = 6e-08
Identities = 55/223 (24%), Positives = 94/223 (42%), Gaps = 28/223 (12%)
Query: 25 VLENVHLSLKKGEIVALVSPSGTGKSTILH-IAGLLEVPD-------QGNVIIANQLCNK 76
+L ++ L ++ G + AL+ +G GKST+L +AG L G+V + +
Sbjct: 16 ILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDLTGGGAPRGARVTGDVTLNGEPLAA 75
Query: 77 LSDDKKSFLRCSKIGFVYQEHRLLMDFSVIENII---FPQIIAG--INHKTAYQRAMDLL 131
+ + + LR + Q + FS E ++ +P + H+ + A L
Sbjct: 76 IDAPRLARLR----AVLPQAAQPAFAFSAREIVLLGRYPHARRAGALTHRDG-EIAWQAL 130
Query: 132 SYMDMSQYANRRSSDISGGEQQRVAICRAIAN---------KPLIILADEPTGNLDLKTA 182
+ + R + +SGGE RV R +A P +L DEPT LDL
Sbjct: 131 ALAGATALVGRDVTTLSGGELARVQFARVLAQLWPPHDAAQPPRYLLLDEPTAALDLAHQ 190
Query: 183 QQVFSILKYLVVRSGLAALIATHNHDLASQ-MDRQITIRDGMI 224
++ ++ L L L H+ +LA++ DR + DG I
Sbjct: 191 HRLLDTVRRLARDWNLGVLAIVHDPNLAARHADRIAMLADGAI 233
>gnl|CDD|162636 TIGR01978, sufC, FeS assembly ATPase SufC. SufC is part of the SUF
system, shown in E. coli to consist of six proteins and
believed to act in Fe-S cluster formation during
oxidative stress. SufC forms a complex with SufB and
SufD. SufC belongs to the ATP-binding cassette
transporter family (pfam00005) but is no longer thought
to be part of a transporter. The complex is reported as
cytosolic (PubMed:12554644) or associated with the
membrane (PubMed:11943156). The SUF system also includes
a cysteine desulfurase (SufS, enhanced by SufE) and a
probable iron-sulfur cluster assembly scaffold protein,
SufA.
Length = 243
Score = 53.0 bits (128), Expect = 6e-08
Identities = 56/205 (27%), Positives = 98/205 (47%), Gaps = 37/205 (18%)
Query: 24 PVLENVHLSLKKGEIVALVSPSGTGKSTILH-IAG--LLEVPDQGNVIIANQLCNKLSDD 80
+L+ V+L++KKGEI A++ P+G+GKST+ IAG EV G ++ Q +L D
Sbjct: 14 EILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPSYEVTS-GTILFKGQDLLELEPD 72
Query: 81 KKS----FLRCSKIGFVYQEHRLLMDFSVIENIIFPQIIAGINHKTAY--QRAMDLLSY- 133
+++ FL F Y E + + N+ F + + +N + + + +DLL +
Sbjct: 73 ERARAGLFL-----AFQYPE-----EIPGVSNLEF--LRSALNARRSARGEEPLDLLDFL 120
Query: 134 ---------MDMSQ-YANRRSSD-ISGGEQQRVAICRAIANKPLIILADEPTGNLDLKTA 182
+ M + + NR ++ SGGE++R I + +P + + DE LD+
Sbjct: 121 KLLKAKLALLGMDEEFLNRSVNEGFSGGEKKRNEILQMALLEPKLAILDEIDSGLDIDAL 180
Query: 183 QQVFSILKYLVVRS-GLAALIATHN 206
+ V + L R + LI TH
Sbjct: 181 KIVAEGINRL--REPDRSFLIITHY 203
>gnl|CDD|162131 TIGR00956, 3a01205, Pleiotropic Drug Resistance (PDR) Family
protein.
Length = 1394
Score = 52.0 bits (125), Expect = 1e-07
Identities = 63/212 (29%), Positives = 102/212 (48%), Gaps = 24/212 (11%)
Query: 25 VLENVHLSLKKGEIVALVSPSGTGKSTILHIAGLLEVPDQGNVIIANQLCNKLSDDKKSF 84
+L NV +K G + AL+ SG GK+T+L++ L E G + ++L N D SF
Sbjct: 778 ILNNVDGWVKPGTLTALMGASGAGKTTLLNV--LAERVTTGVITGGDRLVNGRPLDS-SF 834
Query: 85 LRCSKIGFVYQEHRLLMDFSVIENIIF------PQIIAGINHKTAY-QRAMDLLSYMDMS 137
R IG+V Q+ L +V E++ F P+ ++ + K Y + + LL +M
Sbjct: 835 QR--SIGYVQQQDLHLPTSTVRESLRFSAYLRQPKSVS-KSEKMEYVEEVIKLL---EME 888
Query: 138 QYANRRSSDISGG---EQ-QRVAICRAIANKP-LIILADEPTGNLDLKTAQQVFSILKYL 192
YA+ G EQ +R+ I + KP L++ DEPT LD +TA + +++ L
Sbjct: 889 SYADAVVGVPGEGLNVEQRKRLTIGVELVAKPKLLLFLDEPTSGLDSQTAWSICKLMRKL 948
Query: 193 VVRSGLAALIATH--NHDLASQMDRQITIRDG 222
G A L H + L + DR + ++ G
Sbjct: 949 -ADHGQAILCTIHQPSAILFEEFDRLLLLQKG 979
Score = 40.5 bits (95), Expect = 4e-04
Identities = 19/57 (33%), Positives = 25/57 (43%)
Query: 147 ISGGEQQRVAICRAIANKPLIILADEPTGNLDLKTAQQVFSILKYLVVRSGLAALIA 203
+SGGE++RV+I A I D T LD TA + LK L+A
Sbjct: 210 VSGGERKRVSIAEASLGGAKIQCWDNATRGLDSATALEFIRALKTSANILDTTPLVA 266
Score = 29.3 bits (66), Expect = 0.87
Identities = 11/46 (23%), Positives = 23/46 (50%), Gaps = 5/46 (10%)
Query: 8 LLQNVKHSYRQVGKPFPVLENVHLSLKKGEIVALVSPSGTGKSTIL 53
L+ + + F +L+ + +K GE+ ++ G+G ST+L
Sbjct: 64 KLKKFRDTKT-----FDILKPMDGLIKPGELTVVLGRPGSGCSTLL 104
>gnl|CDD|178622 PLN03073, PLN03073, ABC transporter F family; Provisional.
Length = 718
Score = 51.0 bits (122), Expect = 2e-07
Identities = 52/204 (25%), Positives = 95/204 (46%), Gaps = 24/204 (11%)
Query: 24 PVL-ENVHLSLKKGEIVALVSPSGTGKSTILH-IAGLLEVPDQGNVIIANQLCNKLSDDK 81
P+L +N++ + +A+V P+G GKSTIL I+G L+ P G V + ++
Sbjct: 522 PLLFKNLNFGIDLDSRIAMVGPNGIGKSTILKLISGELQ-PSSGTVFRSAKV-------- 572
Query: 82 KSFLRCSKIGFVYQEHRLLMDFSVIENIIFPQIIAGINHKTAYQRAMDLLSYMDMSQYAN 141
++ Q H +D S + + G+ + RA L S+ A
Sbjct: 573 -------RMAVFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKL--RA-HLGSFGVTGNLAL 622
Query: 142 RRSSDISGGEQQRVAICRAIANKPLIILADEPTGNLDLKTAQQVFSILKYLVVRSGLAAL 201
+ +SGG++ RVA + KP I+L DEP+ +LDL V ++++ LV+ G +
Sbjct: 623 QPMYTLSGGQKSRVAFAKITFKKPHILLLDEPSNHLDLDA---VEALIQGLVLFQGGVLM 679
Query: 202 IATHNHDLASQMDRQITIRDGMIA 225
++ H ++ +D + +G +
Sbjct: 680 VSHDEHLISGSVDELWVVSEGKVT 703
Score = 41.8 bits (98), Expect = 2e-04
Identities = 22/63 (34%), Positives = 38/63 (60%), Gaps = 1/63 (1%)
Query: 118 INHKTAYQRAMDLLSYMDMS-QYANRRSSDISGGEQQRVAICRAIANKPLIILADEPTGN 176
I+ TA RA +L+ + + + + + SGG + R+A+ RA+ +P ++L DEPT +
Sbjct: 315 IDAYTAEARAASILAGLSFTPEMQVKATKTFSGGWRMRIALARALFIEPDLLLLDEPTNH 374
Query: 177 LDL 179
LDL
Sbjct: 375 LDL 377
>gnl|CDD|130262 TIGR01194, cyc_pep_trnsptr, cyclic peptide transporter. This model
describes cyclic peptide transporter in bacteria.
Bacteria have elaborate pathways for the production of
toxins and secondary metabolites. Many such compounds,
including syringomycin and pyoverdine are synthesized on
non-ribosomal templates consisting of a multienzyme
complex. On several occasions the proteins of the
complex and transporter protein are present on the same
operon. Often times these compounds cross the biological
membrane by specific transporters. Syringomycin is an
amphipathic, cylclic lipodepsipeptide when inserted into
host causes formation of channels, permeable to variety
of cations. On the other hand, pyoverdine is a cyclic
octa-peptidyl dihydroxyquinoline, which is efficient in
sequestering iron for uptake.
Length = 555
Score = 50.0 bits (119), Expect = 6e-07
Identities = 48/225 (21%), Positives = 104/225 (46%), Gaps = 21/225 (9%)
Query: 7 LLLQNVKHSYR--QVGKPFPVLENVHLSLKKGEIVALVSPSGTGKSTILHIAGLLEVPDQ 64
+ L++V + + + + F L + L + +G+IV +V +G GKST+ + L +P +
Sbjct: 338 IELKDVHMNPKAPEGSEGF-ALGPIDLRIAQGDIVFIVGENGCGKSTLAKLFCGLYIPQE 396
Query: 65 GNVIIANQLCNKLSDDKKSFLR--CSKIGFVYQEHRLLMDFSVIENIIFPQI--IAGINH 120
G +++ +S D + R S I DF + +++I P A +++
Sbjct: 397 GEILLDGA---AVSADSRDDYRDLFSAI---------FADFHLFDDLIGPDEGEHASLDN 444
Query: 121 KTAYQRAMDLLSYMDMSQYANRRSSDISGGEQQRVA-ICRAIANKPLIILADEPTGNLDL 179
Y + +++ + + ++ +S G+Q+R+A IC + ++P+++ DE + D
Sbjct: 445 AQQYLQRLEIADKVKIEDGGFSTTTALSTGQQKRLALICAWLEDRPILLF-DEWAADQDP 503
Query: 180 KTAQQVFSILKYLVVRSGLAALIATHNHDLASQMDRQITIRDGMI 224
+ + L + R G +I +H+ D+ I + G I
Sbjct: 504 AFKRFFYEELLPDLKRQGKTIIIISHDDQYFELADQIIKLAAGCI 548
>gnl|CDD|184594 PRK14264, PRK14264, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 305
Score = 49.4 bits (118), Expect = 8e-07
Identities = 61/230 (26%), Positives = 94/230 (40%), Gaps = 55/230 (23%)
Query: 26 LENVHLSLKKGEIVALVSPSGTGKSTIL-------------HIAGLLEVPDQGNVIIANQ 72
L+ V + + + + AL+ PSG GKST L I G +E+ Q
Sbjct: 61 LKGVSMDIPEKSVTALIGPSGCGKSTFLRCLNRMNDRIKAARIDGSVELDGQ-------- 112
Query: 73 LCNKLSDDKKSFLRCSK-IGFVYQEHRLLMDFSVIENIIF-PQIIAGINHKTAYQ----- 125
+ D + + K +G V+Q S+ ENI + P+ IN +
Sbjct: 113 ---DIYQDGVNLVELRKRVGMVFQSPNPFPK-SIRENISYGPRKHGDINTGLLARLLGRD 168
Query: 126 --RAMDLLSYMDMSQYA-----NRRSSD----ISGGEQQRVAICRAIANKPLIILADEPT 174
A D L + Q A N R D +SGG+QQR+ I R +A P +IL DEP
Sbjct: 169 DKDAEDELVERSLRQAALWDEVNDRLDDNALGLSGGQQQRLCIARCLAVDPEVILMDEPA 228
Query: 175 GNLDLKTAQQVFSILK-----YLVVRSGLAALIATHNHDLASQMDRQITI 219
LD ++ +++ Y VV + THN A+++ Q +
Sbjct: 229 SALDPIATSKIEDLIEELAEEYTVV-------VVTHNMQQAARISDQTAV 271
>gnl|CDD|185024 PRK15064, PRK15064, ABC transporter ATP-binding protein;
Provisional.
Length = 530
Score = 48.3 bits (116), Expect = 1e-06
Identities = 49/198 (24%), Positives = 83/198 (41%), Gaps = 71/198 (35%)
Query: 7 LLLQNVKHSYRQVGKPFPVLENVHLSLKKGEIVALVSPSGTGKSTILH-IAGLLEVPDQG 65
L ++N+ + P+ +N++L L+ GE +A++ +G GK+T+L + G LE PD G
Sbjct: 320 LEVENLTKGFDNG----PLFKNLNLLLEAGERLAIIGENGVGKTTLLRTLVGELE-PDSG 374
Query: 66 NVIIANQLCNKLSDDKKSFLRCSKIGFVYQEHRLLMDFSVIENIIFPQIIAGINHKTAYQ 125
V K S++ + IG+ Q+H AY
Sbjct: 375 TV--------KWSEN-------ANIGYYAQDH-------------------------AYD 394
Query: 126 RAMDLLSYMD-MSQYANRR---------------SSD--------ISGGEQQRVAICRAI 161
D L+ D MSQ+ S D +SGGE+ R+ + +
Sbjct: 395 FEND-LTLFDWMSQWRQEGDDEQAVRGTLGRLLFSQDDIKKSVKVLSGGEKGRMLFGKLM 453
Query: 162 ANKPLIILADEPTGNLDL 179
KP +++ DEPT ++D+
Sbjct: 454 MQKPNVLVMDEPTNHMDM 471
Score = 43.0 bits (102), Expect = 6e-05
Identities = 54/185 (29%), Positives = 84/185 (45%), Gaps = 36/185 (19%)
Query: 24 PVLENVHLSLKKGEIVALVSPSGTGKSTILHI-AGLLEVPDQGNVII-ANQLCNKLSDDK 81
P+ EN+ + G L+ +G GKST + I G LE P GNV + N+ KL D+
Sbjct: 15 PLFENISVKFGGGNRYGLIGANGCGKSTFMKILGGDLE-PSAGNVSLDPNERLGKLRQDQ 73
Query: 82 KSFLRCSKIGFVYQEHRLLMDFSVIENIIF--PQI-------IAGINHK-------TAYQ 125
+F + + V H L + + I+ P++ +A + K TA
Sbjct: 74 FAFEEFTVLDTVIMGHTELWEVKQERDRIYALPEMSEEDGMKVADLEVKFAEMDGYTAEA 133
Query: 126 RAMDLLS---------YMDMSQYANRRSSDISGGEQQRVAICRAIANKPLIILADEPTGN 176
RA +LL Y MS+ ++ G + RV + +A+ + P I+L DEPT N
Sbjct: 134 RAGELLLGVGIPEEQHYGLMSE--------VAPGWKLRVLLAQALFSNPDILLLDEPTNN 185
Query: 177 LDLKT 181
LD+ T
Sbjct: 186 LDINT 190
>gnl|CDD|163251 TIGR03411, urea_trans_UrtD, urea ABC transporter, ATP-binding
protein UrtD. Members of this protein family are ABC
transporter ATP-binding subunits associated with urea
transport and metabolism. This protein is found in a
conserved five-gene transport operon typically found
adjacent to urease genes. It was shown in Cyanobacteria
that disruption leads to the loss of high-affinity urea
transport activity.
Length = 242
Score = 48.3 bits (116), Expect = 2e-06
Identities = 37/162 (22%), Positives = 78/162 (48%), Gaps = 15/162 (9%)
Query: 23 FPVLENVHLSLKKGEIVALVSPSGTGKSTILH-IAGLLEVPDQGNVIIANQLCNKLSDDK 81
F L ++ L + GE+ ++ P+G GK+T++ I G PD+G+V+ L + +
Sbjct: 15 FKALNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKTR-PDEGSVLFGGTDLTGLPEHQ 73
Query: 82 KSFLRCSKIGFVYQEHRLLMDFSVIENI---------IFPQIIAGINHKTAYQRAMDLLS 132
+ IG +Q+ + + +V EN+ +F + ++ + R ++L
Sbjct: 74 IARA---GIGRKFQKPTVFENLTVFENLELALPRDKSVFASLFFRLSAEEK-DRIEEVLE 129
Query: 133 YMDMSQYANRRSSDISGGEQQRVAICRAIANKPLIILADEPT 174
+ ++ A+R + +S G++Q + I + P ++L DEP
Sbjct: 130 TIGLADEADRLAGLLSHGQKQWLEIGMLLMQDPKLLLLDEPV 171
>gnl|CDD|185067 PRK15112, PRK15112, antimicrobial peptide ABC system ATP-binding
protein SapF; Provisional.
Length = 267
Score = 45.6 bits (108), Expect = 1e-05
Identities = 45/207 (21%), Positives = 103/207 (49%), Gaps = 26/207 (12%)
Query: 26 LENVHLSLKKGEIVALVSPSGTGKSTILH-IAGLLEVPDQGNVIIANQLCNKLSDDKKSF 84
++ + +L++G+ +A++ +G+GKST+ +AG++E P G ++I + L S+
Sbjct: 29 VKPLSFTLREGQTLAIIGENGSGKSTLAKMLAGMIE-PTSGELLIDDH---PLHFGDYSY 84
Query: 85 LRCSKIGFVYQE--------HRL--LMDFSVIENIIFPQIIAGINHKTAYQ--RAMDLLS 132
R +I ++Q+ R+ ++DF + N + K + R + LL
Sbjct: 85 -RSQRIRMIFQDPSTSLNPRQRISQILDFPLRLNT---DLEPEQREKQIIETLRQVGLLP 140
Query: 133 YMDMSQYANRRSSDISGGEQQRVAICRAIANKPLIILADEPTGNLDLKTAQQVFSILKYL 192
+A+ ++ G++QR+ + RA+ +P +I+ADE +LD+ Q+ +++ L
Sbjct: 141 -----DHASYYPHMLAPGQKQRLGLARALILRPKVIIADEALASLDMSMRSQLINLMLEL 195
Query: 193 VVRSGLAALIATHNHDLASQMDRQITI 219
+ G++ + T + + + Q+ +
Sbjct: 196 QEKQGISYIYVTQHLGMMKHISDQVLV 222
>gnl|CDD|173501 PTZ00265, PTZ00265, multidrug resistance protein (mdr1);
Provisional.
Length = 1466
Score = 45.4 bits (107), Expect = 1e-05
Identities = 56/205 (27%), Positives = 90/205 (43%), Gaps = 24/205 (11%)
Query: 9 LQNVKHSYRQVGKPFPVLENVHLSLKKGEIVALVSPSGTGKSTILHIAGLLEVPDQGNVI 68
+NV+ Y K + ++++ +L +G+ A V SG GKSTIL + L P +G++I
Sbjct: 385 FKNVRFHY-DTRKDVEIYKDLNFTLTEGKTYAFVGESGCGKSTILKLIERLYDPTEGDII 443
Query: 69 IANQLCNKLSDDKKSFLRCSKIGFVYQEHRLLMDFSVIENIIFPQIIAGINHKTAYQRAM 128
I + + L D + R SKIG V Q+ LL S+ NI K +
Sbjct: 444 INDS--HNLKDINLKWWR-SKIGVVSQD-PLLFSNSIKNNI-----------KYSLYSLK 488
Query: 129 DLLSYMDMSQYANRRSSDISGGEQQRVAICRAIANKPLIILADEPTGNLDLKTAQQVFSI 188
DL + +S Y N +D + +R + CRA L +++ N ++ + +I
Sbjct: 489 DLEA---LSNYYNEDGNDSQENKNKRNS-CRAKCAGDLNDMSNTTDSNELIEMRKNYQTI 544
Query: 189 LKYLVVRSGLAALIATHNHDLASQM 213
VV LI HD S +
Sbjct: 545 KDSEVVDVSKKVLI----HDFVSAL 565
Score = 42.3 bits (99), Expect = 9e-05
Identities = 18/38 (47%), Positives = 28/38 (73%)
Query: 144 SSDISGGEQQRVAICRAIANKPLIILADEPTGNLDLKT 181
+S +SGG++QR++I RAI P I++ DE T +LD K+
Sbjct: 577 ASKLSGGQKQRISIARAIIRNPKILILDEATSSLDNKS 614
Score = 41.2 bits (96), Expect = 2e-04
Identities = 17/32 (53%), Positives = 25/32 (78%)
Query: 147 ISGGEQQRVAICRAIANKPLIILADEPTGNLD 178
+SGG++QR+AI RA+ +P I+L DE T +LD
Sbjct: 1359 LSGGQKQRIAIARALLREPKILLLDEATSSLD 1390
Score = 28.8 bits (64), Expect = 1.1
Identities = 16/72 (22%), Positives = 40/72 (55%), Gaps = 6/72 (8%)
Query: 15 SYRQVGKP-FPVLENVHLSLKKGEIVALVSPSGTGKSTILHIAGLLEVPDQGN---VIIA 70
++R + +P P+ +++ S + A+V +G+GKST++ + L+ D N ++
Sbjct: 1172 NFRYISRPNVPIYKDLTFSCDSKKTTAIVGETGSGKSTVMSL--LMRFYDLKNDHHIVFK 1229
Query: 71 NQLCNKLSDDKK 82
N+ N +++++
Sbjct: 1230 NEHTNDMTNEQD 1241
>gnl|CDD|184128 PRK13541, PRK13541, cytochrome c biogenesis protein CcmA;
Provisional.
Length = 195
Score = 44.5 bits (105), Expect = 2e-05
Identities = 45/181 (24%), Positives = 79/181 (43%), Gaps = 14/181 (7%)
Query: 25 VLENVHLSLKKGEIVALVSPSGTGKSTILHIAGLLEVPDQGNVIIANQLCNKLSDDKKSF 84
L ++ ++ I + +G GKS++L + + P GN+ N N ++ K +
Sbjct: 15 NLFDLSITFLPSAITYIKGANGCGKSSLLRMIAGIMQPSSGNIYYKNCNINNIA---KPY 71
Query: 85 LRCSKIGFVYQEHRLLMDFSVIENIIFPQIIAGINHKTAYQRAMDLLSYMDMSQYANRRS 144
C+ IG L ++ +V EN+ F I N A + Y + + +
Sbjct: 72 --CTYIG---HNLGLKLEMTVFENLKFWSEI--YNSAETLYAA---IHYFKLHDLLDEKC 121
Query: 145 SDISGGEQQRVAICRAIANKPLIILADEPTGNLDLKTAQQVFSILKYLVVRSGLAALIAT 204
+S G Q+ VAI R IA + + L DE NL K + + + L + SG L+++
Sbjct: 122 YSLSSGMQKIVAIARLIACQSDLWLLDEVETNLS-KENRDLLNNLIVMKANSGGIVLLSS 180
Query: 205 H 205
H
Sbjct: 181 H 181
>gnl|CDD|182733 PRK10790, PRK10790, putative multidrug transporter
membrane\ATP-binding components; Provisional.
Length = 592
Score = 43.9 bits (104), Expect = 3e-05
Identities = 48/188 (25%), Positives = 89/188 (47%), Gaps = 26/188 (13%)
Query: 9 LQNVKHSYRQVGKPFPVLENVHLSLKKGEIVALVSPSGTGKSTILHIAGLLE---VPDQG 65
+ NV +YR VL+N++LS+ VALV +G+GKST +A LL +G
Sbjct: 343 IDNVSFAYRD-DNL--VLQNINLSVPSRGFVALVGHTGSGKST---LASLLMGYYPLTEG 396
Query: 66 NVIIANQLCNKLSDDKKSFLRCSKIGFVYQEHRLLMDFSVIENIIFPQIIAGINHKTAYQ 125
+ + + + LS S LR + V Q+ +L D + + N+ + I+ +
Sbjct: 397 EIRLDGRPLSSLS---HSVLR-QGVAMVQQDPVVLAD-TFLANVTLGRDIS----EEQVW 447
Query: 126 RAMDLLSYMD----MSQYANRR----SSDISGGEQQRVAICRAIANKPLIILADEPTGNL 177
+A++ + + + +++S G++Q +A+ R + P I++ DE T N+
Sbjct: 448 QALETVQLAELARSLPDGLYTPLGEQGNNLSVGQKQLLALARVLVQTPQILILDEATANI 507
Query: 178 DLKTAQQV 185
D T Q +
Sbjct: 508 DSGTEQAI 515
>gnl|CDD|184125 PRK13538, PRK13538, cytochrome c biogenesis protein CcmA;
Provisional.
Length = 204
Score = 43.6 bits (104), Expect = 4e-05
Identities = 52/194 (26%), Positives = 87/194 (44%), Gaps = 30/194 (15%)
Query: 27 ENVHLSLKKGEIVALVSPSGTGKSTILHI-AGLLEVPDQGNVIIANQLCNKLSDDKKSFL 85
+ +L GE+V + P+G GK+++L I AGL PD G V+ + + D+ L
Sbjct: 18 SGLSFTLNAGELVQIEGPNGAGKTSLLRILAGLAR-PDAGEVLWQGEPIRRQRDEYHQDL 76
Query: 86 RCSKIGFVYQEH-----RLLMDFSVIENIIFPQIIAGINHKTAYQRAMD---LLSYMDMS 137
+Y H L + +EN+ F Q + G A A+ L + D+
Sbjct: 77 -------LYLGHQPGIKTEL---TALENLRFYQRLHGPGDDEALWEALAQVGLAGFEDVP 126
Query: 138 QYANRRSSDISGGEQQRVAICR-AIANKPLIILADEPTGNLDLKTAQQVFSILKYLVVRS 196
+S G+Q+RVA+ R + PL IL DEP +D + ++ ++L +
Sbjct: 127 ------VRQLSAGQQRRVALARLWLTRAPLWIL-DEPFTAIDKQGVARLEALLAQHAEQG 179
Query: 197 GLAALIATHNHDLA 210
G+ ++ TH DL
Sbjct: 180 GM-VILTTH-QDLP 191
>gnl|CDD|182732 PRK10789, PRK10789, putative multidrug transporter
membrane\ATP-binding components; Provisional.
Length = 569
Score = 43.2 bits (102), Expect = 6e-05
Identities = 50/180 (27%), Positives = 84/180 (46%), Gaps = 26/180 (14%)
Query: 24 PVLENVHLSLKKGEIVALVSPSGTGKSTILH-IAGLLEVPDQGNVIIANQLCNKLSDDKK 82
P LENV+ +LK G+++ + P+G+GKST+L I +V +G++ + L+ +
Sbjct: 329 PALENVNFTLKPGQMLGICGPTGSGKSTLLSLIQRHFDV-SEGDIRFHDI---PLTKLQL 384
Query: 83 SFLRCSKIGFVYQEHRLLMDFSVIENIIFPQIIAGINHKTAYQ----RAMDLLSYMD--- 135
R S++ V Q L D +V NI + A Q L S D
Sbjct: 385 DSWR-SRLAVVSQTPFLFSD-TVANNI-------ALGRPDATQQEIEHVARLASVHDDIL 435
Query: 136 -MSQ-Y---ANRRSSDISGGEQQRVAICRAIANKPLIILADEPTGNLDLKTAQQVFSILK 190
+ Q Y R +SGG++QR++I RA+ I++ D+ +D +T Q+ L+
Sbjct: 436 RLPQGYDTEVGERGVMLSGGQKQRISIARALLLNAEILILDDALSAVDGRTEHQILHNLR 495
>gnl|CDD|184127 PRK13540, PRK13540, cytochrome c biogenesis protein CcmA;
Provisional.
Length = 200
Score = 42.6 bits (100), Expect = 8e-05
Identities = 42/183 (22%), Positives = 84/183 (45%), Gaps = 13/183 (7%)
Query: 24 PVLENVHLSLKKGEIVALVSPSGTGKSTILH-IAGLLEVPDQGNVIIANQLCNKLSDDKK 82
P+L+ + L G ++ L +G GK+T+L IAGLL P++G ++ Q K D
Sbjct: 15 PLLQQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGLLN-PEKGEILFERQSIKK---DLC 70
Query: 83 SFLRCSKIGFVYQEHRLLMDFSVIENIIFPQIIAGINHKTAYQRAMDLLSYMDMSQYANR 142
++ + ++ FV + ++ EN ++ I+ +L + +
Sbjct: 71 TYQK--QLCFVGHRSGINPYLTLRENCLY-----DIHFSPGAVGITELCRLFSLEHLIDY 123
Query: 143 RSSDISGGEQQRVAICRAIANKPLIILADEPTGNLDLKTAQQVFSILKYLVVRSGLAALI 202
+S G++++VA+ R +K + L DEP LD + + + ++ + G A L+
Sbjct: 124 PCGLLSSGQKRQVALLRLWMSKAKLWLLDEPLVALDELSLLTIITKIQEHRAKGG-AVLL 182
Query: 203 ATH 205
+H
Sbjct: 183 TSH 185
>gnl|CDD|182605 PRK10636, PRK10636, putative ABC transporter ATP-binding protein;
Provisional.
Length = 638
Score = 41.3 bits (97), Expect = 2e-04
Identities = 58/214 (27%), Positives = 91/214 (42%), Gaps = 52/214 (24%)
Query: 25 VLENVHLSLKKGEIVALVSPSGTGKSTILHIAGLLEVPDQGNVIIANQLCNKLSDDKKSF 84
+L+N ++ G+ V LV +G GKST+L + L N++S D S+
Sbjct: 16 LLDNATATINPGQKVGLVGKNGCGKSTLLAL-----------------LKNEISADGGSY 58
Query: 85 LRCS--KIGFVYQEHRLLMDFSVIENII-----FPQI---------------IAGINHK- 121
++ +V QE L +E +I + Q+ IA I+ K
Sbjct: 59 TFPGNWQLAWVNQETPAL-PQPALEYVIDGDREYRQLEAQLHDANERNDGHAIATIHGKL 117
Query: 122 ------TAYQRAMDLLSYMDMSQYANRRS-SDISGGEQQRVAICRAIANKPLIILADEPT 174
T RA LL + S R SD SGG + R+ + +A+ + ++L DEPT
Sbjct: 118 DAIDAWTIRSRAASLLHGLGFSNEQLERPVSDFSGGWRMRLNLAQALICRSDLLLLDEPT 177
Query: 175 GNLDLKTAQQVFSILKYLVVRSGLAALIATHNHD 208
+LDL V + K+L G LI +H+ D
Sbjct: 178 NHLDLDA---VIWLEKWLKSYQGTLILI-SHDRD 207
Score = 40.2 bits (94), Expect = 5e-04
Identities = 58/214 (27%), Positives = 94/214 (43%), Gaps = 38/214 (17%)
Query: 25 VLENVHLSLKKGEIVALVSPSGTGKSTILH-IAGLLEVPDQGNVIIANQLCNKLSDDKKS 83
+L+++ L+L G + L+ +G GKST++ +AG L P G + +A +
Sbjct: 327 ILDSIKLNLVPGSRIGLLGRNGAGKSTLIKLLAGELA-PVSGEIGLAKGI---------- 375
Query: 84 FLRCSKIGFVYQEHRLLM---DFSVIENIIFPQIIAGINHKTAYQRAMDLLSYM----DM 136
K+G+ Q H+L D S + Q +A + + Q+ D L D
Sbjct: 376 -----KLGYFAQ-HQLEFLRADESPL------QHLARLAPQELEQKLRDYLGGFGFQGDK 423
Query: 137 SQYANRRSSDISGGEQQRVAICRAIANKPLIILADEPTGNLDLKTAQQVFSIL----KYL 192
RR SGGE+ R+ + + +P ++L DEPT +LDL Q + L L
Sbjct: 424 VTEETRR---FSGGEKARLVLALIVWQRPNLLLLDEPTNHLDLDMRQALTEALIDFEGAL 480
Query: 193 VVRSGLAALIATHNHDLASQMDRQITIRDGMIAD 226
VV S L+ + DL D ++ DG + D
Sbjct: 481 VVVSHDRHLLRSTTDDLYLVHDGKVEPFDGDLED 514
>gnl|CDD|128665 smart00382, AAA, ATPases associated with a variety of cellular
activities. AAA - ATPases associated with a variety of
cellular activities. This profile/alignment only detects
a fraction of this vast family. The poorly conserved
N-terminal helix is missing from the alignment.
Length = 148
Score = 39.3 bits (91), Expect = 9e-04
Identities = 27/178 (15%), Positives = 53/178 (29%), Gaps = 56/178 (31%)
Query: 35 KGEIVALVSPSGTGKSTILHIAGLLEVPDQGNVIIANQLCNKLSDDKKSFLRCSKIGFVY 94
GE++ +V P G+GK+T+ L +L + +
Sbjct: 1 PGEVILIVGPPGSGKTTLAR-----------------ALARELGPPGGGVIYIDGEDILE 43
Query: 95 QEHRLLMDFSVIENIIFPQIIAGINHKTAYQRAMDLLSYMDMSQYANRRSSDISGGEQQR 154
+ L+ V + SG + R
Sbjct: 44 EVLDQLLLIIVGGKK-----------------------------------ASGSGELRLR 68
Query: 155 VAICRAIANKPLIILADEPTGNLDLKTAQQVFSILKYLVV----RSGLAALIATHNHD 208
+A+ A KP +++ DE T LD + + + + ++ +I T N +
Sbjct: 69 LALALARKLKPDVLILDEITSLLDAEQEALLLLLEELRLLLLLKSEKNLTVILTTNDE 126
>gnl|CDD|184130 PRK13545, tagH, teichoic acids export protein ATP-binding subunit;
Provisional.
Length = 549
Score = 39.1 bits (91), Expect = 0.001
Identities = 35/188 (18%), Positives = 75/188 (39%), Gaps = 51/188 (27%)
Query: 10 QNVKHSYRQVGKPFP----------------VLENVHLSLKKGEIVALVSPSGTGKSTIL 53
++V Y+ KPF L N+ + +GEIV ++ +G+GKST+
Sbjct: 8 EHVTKKYKMYNKPFDKLKDLFFRSKDGEYHYALNNISFEVPEGEIVGIIGLNGSGKSTLS 67
Query: 54 HIAGLLEVPDQGNV---------IIANQLCNKLSDDKKSFLRCSKIGFVYQEHRLLMDFS 104
++ + +P++G V I++ L +L+
Sbjct: 68 NLIAGVTMPNKGTVDIKGSAALIAISSGLNGQLTG------------------------- 102
Query: 105 VIENIIFPQIIAGINHKTAYQRAMDLLSYMDMSQYANRRSSDISGGEQQRVAICRAIANK 164
IENI ++ G+ + + +++ + D+ ++ + S G + R+ ++
Sbjct: 103 -IENIELKGLMMGLTKEKIKEIIPEIIEFADIGKFIYQPVKTYSSGMKSRLGFAISVHIN 161
Query: 165 PLIILADE 172
P I++ DE
Sbjct: 162 PDILVIDE 169
>gnl|CDD|140270 PTZ00243, PTZ00243, ABC transporter; Provisional.
Length = 1560
Score = 37.5 bits (87), Expect = 0.003
Identities = 51/222 (22%), Positives = 97/222 (43%), Gaps = 51/222 (22%)
Query: 22 PFPVLENVHLSLKKGEIVALVSPSGTGKSTILH-IAGLLEVPDQGNVIIANQLCNKLSDD 80
P +L +V +S+ +G++ ++ +G+GKST+L + E+ +G V
Sbjct: 672 PKVLLRDVSVSVPRGKLTVVLGATGSGKSTLLQSLLSQFEI-SEGRVWAERS-------- 722
Query: 81 KKSFLRCSKIGFVYQEHRLLMDFSVIENIIFPQIIAGINHKTAYQRAMDLLSYM------ 134
I +V Q+ +M+ +V NI+F + A L +
Sbjct: 723 ---------IAYVPQQ-AWIMNATVRGNILF----------FDEEDAARLADAVRVSQLE 762
Query: 135 -DMSQYANRRSSDI-------SGGEQQRVAICRAI-ANKPLIILADEPTGNLDLKTAQQV 185
D++Q ++I SGG++ RV++ RA+ AN+ + +L D+P LD ++V
Sbjct: 763 ADLAQLGGGLETEIGEKGVNLSGGQKARVSLARAVYANRDVYLL-DDPLSALDAHVGERV 821
Query: 186 FS--ILKYLVVRSGLAALIATHNHDLASQMDRQITIRDGMIA 225
L L +G ++ATH + + D + + DG +
Sbjct: 822 VEECFLGAL---AGKTRVLATHQVHVVPRADYVVALGDGRVE 860
Score = 30.9 bits (70), Expect = 0.29
Identities = 18/47 (38%), Positives = 27/47 (57%), Gaps = 2/47 (4%)
Query: 7 LLLQNVKHSYRQVGKPFPVLENVHLSLKKGEIVALVSPSGTGKSTIL 53
L+ + V+ YR+ G P VL V + E V +V +G+GKST+L
Sbjct: 1309 LVFEGVQMRYRE-GLPL-VLRGVSFRIAPREKVGIVGRTGSGKSTLL 1353
Score = 29.7 bits (67), Expect = 0.70
Identities = 27/88 (30%), Positives = 44/88 (50%), Gaps = 11/88 (12%)
Query: 145 SDISGGEQQRVAICRAIANK-PLIILADEPTGNLDLKTAQQVFSILKYLVVRSGLAA--- 200
S+ S G++Q + + RA+ K IL DE T N+D +Q+ + V S +A
Sbjct: 1444 SNYSVGQRQLMCMARALLKKGSGFILMDEATANIDPALDRQIQA-----TVMSAFSAYTV 1498
Query: 201 -LIATHNHDLASQMDRQITIRDGMIADL 227
IA H +A Q D+ I + G +A++
Sbjct: 1499 ITIAHRLHTVA-QYDKIIVMDHGAVAEM 1525
>gnl|CDD|162129 TIGR00954, 3a01203, Peroxysomal Fatty Acyl CoA Transporter (FAT)
Family protei.
Length = 659
Score = 37.4 bits (87), Expect = 0.003
Identities = 20/74 (27%), Positives = 35/74 (47%), Gaps = 6/74 (8%)
Query: 147 ISGGEQQRVAICRAIANKPLIILADEPTGNLDLKTAQQVFSILK----YLVVRSGLAALI 202
+SGGE+QR+A+ R +KP + DE T + + ++ + + L S +L
Sbjct: 583 LSGGEKQRIAMARLFYHKPQFAILDECTSAVSVDVEGYMYRLCREFGITLFSVSHRKSLW 642
Query: 203 ATHNHDLASQMDRQ 216
H + L MD +
Sbjct: 643 KYHEYLL--YMDGR 654
>gnl|CDD|161968 TIGR00630, uvra, excinuclease ABC, A subunit. This family is based
on the phylogenomic analysis of JA Eisen (1999, Ph.D.
Thesis, Stanford University).
Length = 924
Score = 37.3 bits (87), Expect = 0.003
Identities = 31/118 (26%), Positives = 57/118 (48%), Gaps = 11/118 (9%)
Query: 101 MDFSVIENIIFPQIIAGINHKTAYQRAMDL-LSYMDMSQYANRRSSDISGGEQQRVAICR 159
+D +V E F + + I+ K Q D+ L Y+ + Q A + +SGGE QR+ + +
Sbjct: 788 LDMTVEEAYEFFEAVPSISRKL--QTLCDVGLGYIKLGQPA----TTLSGGEAQRIKLAK 841
Query: 160 AIANK---PLIILADEPTGNLDLKTAQQVFSILKYLVVRSGLAALIATHNHDLASQMD 214
++ + + + DEPT L +++ +L+ L V G ++ HN D+ D
Sbjct: 842 ELSKRSTGRTLYILDEPTTGLHFDDIKKLLEVLQRL-VDQGNTVVVIEHNLDVIKTAD 898
Score = 30.4 bits (69), Expect = 0.44
Identities = 10/29 (34%), Positives = 19/29 (65%)
Query: 26 LENVHLSLKKGEIVALVSPSGTGKSTILH 54
L+N+ +S+ G + SG+GKST+++
Sbjct: 623 LKNITVSIPLGLFTCITGVSGSGKSTLIN 651
Score = 28.4 bits (64), Expect = 1.4
Identities = 8/27 (29%), Positives = 19/27 (70%)
Query: 26 LENVHLSLKKGEIVALVSPSGTGKSTI 52
L+N+ + + + ++V + SG+GKS++
Sbjct: 12 LKNIDVEIPRDKLVVITGLSGSGKSSL 38
Score = 27.3 bits (61), Expect = 3.5
Identities = 20/65 (30%), Positives = 34/65 (52%), Gaps = 8/65 (12%)
Query: 131 LSYMDMSQYANRRSSDISGGEQQRVAICRAIANK---PLIILADEPTGNLDLKTAQQVFS 187
L Y+ +S R + +SGGE QR+ + I + L +L DEP+ L + +++ +
Sbjct: 476 LDYLTLS----RAAGTLSGGEAQRIRLATQIGSGLTGVLYVL-DEPSIGLHQRDNERLIN 530
Query: 188 ILKYL 192
LK L
Sbjct: 531 TLKRL 535
>gnl|CDD|182515 PRK10522, PRK10522, multidrug transporter membrane
component/ATP-binding component; Provisional.
Length = 547
Score = 36.1 bits (84), Expect = 0.008
Identities = 52/229 (22%), Positives = 112/229 (48%), Gaps = 29/229 (12%)
Query: 7 LLLQNVKHSYRQVGKPFPVLENVHLSLKKGEIVALVSPSGTGKSTILHI-AGLLEVPDQG 65
L L+NV +Y+ G F V ++L++K+GE++ L+ +G+GKST+ + GL + P G
Sbjct: 323 LELRNVTFAYQDNG--FSV-GPINLTIKRGELLFLIGGNGSGKSTLAMLLTGLYQ-PQSG 378
Query: 66 NVIIANQLCNKLSDDKKSFLRCSKIGFVYQEHRLLMDFSVI--ENIIFPQIIAGINHKTA 123
+++ + ++ ++ +++R L FS + + +F Q++
Sbjct: 379 EILLDGK---PVTAEQP------------EDYRKL--FSAVFTDFHLFDQLLGPEGKPAN 421
Query: 124 YQRAMDLLSYMDMS---QYANRRSSDI--SGGEQQRVAICRAIANKPLIILADEPTGNLD 178
L + M+ + + R S++ S G+++R+A+ A+A + I+L DE + D
Sbjct: 422 PALVEKWLERLKMAHKLELEDGRISNLKLSKGQKKRLALLLALAEERDILLLDEWAADQD 481
Query: 179 LKTAQQVFSILKYLVVRSGLAALIATHNHDLASQMDRQITIRDGMIADL 227
++ + +L L+ G +H+ DR + +R+G +++L
Sbjct: 482 PHFRREFYQVLLPLLQEMGKTIFAISHDDHYFIHADRLLEMRNGQLSEL 530
>gnl|CDD|184131 PRK13546, PRK13546, teichoic acids export protein ATP-binding
subunit; Provisional.
Length = 264
Score = 35.9 bits (83), Expect = 0.008
Identities = 17/48 (35%), Positives = 28/48 (58%)
Query: 20 GKPFPVLENVHLSLKKGEIVALVSPSGTGKSTILHIAGLLEVPDQGNV 67
K F L+++ L +G+++ LV +G+GKST+ +I G P G V
Sbjct: 34 NKTFFALDDISLKAYEGDVIGLVGINGSGKSTLSNIIGGSLSPTVGKV 81
>gnl|CDD|181965 PRK09580, sufC, cysteine desulfurase ATPase component; Reviewed.
Length = 248
Score = 35.9 bits (83), Expect = 0.008
Identities = 40/174 (22%), Positives = 74/174 (42%), Gaps = 28/174 (16%)
Query: 24 PVLENVHLSLKKGEIVALVSPSGTGKSTI-LHIAGLLEVP-DQGNVIIANQLCNKLSDDK 81
+L ++L ++ GE+ A++ P+G+GKST+ +AG + G V + +LS +
Sbjct: 15 AILRGLNLEVRPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLELSPED 74
Query: 82 KS----FLRCSKIGFVYQEHRLLMDFSVIENIIFPQIIAGINHKTAYQRAMDLLSYMD-- 135
++ F+ F Y ++ + N F Q Q +D + D
Sbjct: 75 RAGEGIFM-----AFQYP-----VEIPGVSNQFFLQTALNAVRSYRGQEPLDRFDFQDLM 124
Query: 136 --------MSQYANRRSSDI--SGGEQQRVAICRAIANKPLIILADEPTGNLDL 179
M + RS ++ SGGE++R I + +P + + DE LD+
Sbjct: 125 EEKIALLKMPEDLLTRSVNVGFSGGEKKRNDILQMAVLEPELCILDESDSGLDI 178
>gnl|CDD|182852 PRK10938, PRK10938, putative molybdenum transport ATP-binding
protein ModF; Provisional.
Length = 490
Score = 35.8 bits (83), Expect = 0.010
Identities = 42/202 (20%), Positives = 79/202 (39%), Gaps = 36/202 (17%)
Query: 30 HLSLKKGEIVALVSPSGTGKSTILHIAGLLEVPDQGNVIIANQLCNKLS----DDKKSFL 85
L+L G+ A V +G+GKS + A L +L + + F
Sbjct: 23 SLTLNAGDSWAFVGANGSGKSAL-----------------ARALAGELPLLSGERQSQFS 65
Query: 86 RCSKIGFVYQEHRLLMDF--------SVIEN---IIFPQIIAGINHKTAYQRAMDLLSYM 134
+++ F + + ++ S E+ +II A R L
Sbjct: 66 HITRLSFEQLQKLVSDEWQRNNTDMLSPGEDDTGRTTAEIIQDEVKDPA--RCEQLAQQF 123
Query: 135 DMSQYANRRSSDISGGEQQRVAICRAIANKP-LIILADEPTGNLDLKTAQQVFSILKYLV 193
++ +RR +S GE ++ +C+A+ ++P L+IL DEP LD+ + QQ+ +L L
Sbjct: 124 GITALLDRRFKYLSTGETRKTLLCQALMSEPDLLIL-DEPFDGLDVASRQQLAELLASLH 182
Query: 194 VRSGLAALIATHNHDLASQMDR 215
L+ ++ +
Sbjct: 183 QSGITLVLVLNRFDEIPDFVQF 204
Score = 32.3 bits (74), Expect = 0.11
Identities = 56/206 (27%), Positives = 86/206 (41%), Gaps = 38/206 (18%)
Query: 24 PVLENVHLSLKKGEIVALVSPSGTGKSTILH-IAGLLEVPDQGNVIIANQLC-------- 74
P+L N+ + GE +V P+G GKST+L I G + P QG +N L
Sbjct: 274 PILHNLSWQVNPGEHWQIVGPNGAGKSTLLSLITG--DHP-QG---YSNDLTLFGRRRGS 327
Query: 75 -NKLSDDKKSFLRCSKIGFVYQEHRLLMDFSV---IENII----FPQIIAGINHKTA--- 123
+ D KK IG+V L +D+ V + N+I F I GI +
Sbjct: 328 GETIWDIKK------HIGYV--SSSLHLDYRVSTSVRNVILSGFFDSI--GIYQAVSDRQ 377
Query: 124 YQRAMDLLSYMDMS-QYANRRSSDISGGEQQRVAICRAIANKPLIILADEPTGNLDLKTA 182
+ A L + + + A+ +S G+Q+ I RA+ P +++ DEP LD
Sbjct: 378 QKLAQQWLDILGIDKRTADAPFHSLSWGQQRLALIVRALVKHPTLLILDEPLQGLDPLNR 437
Query: 183 QQVFSILKYLVVRSGLAALIATHNHD 208
Q V + L+ L +H H
Sbjct: 438 QLVRRFVDVLISEGETQLLFVSH-HA 462
>gnl|CDD|178685 PLN03140, PLN03140, ABC transporter G family member; Provisional.
Length = 1470
Score = 33.7 bits (77), Expect = 0.046
Identities = 39/175 (22%), Positives = 77/175 (44%), Gaps = 25/175 (14%)
Query: 25 VLENVHLSLKKGEIVALVSPSGTGKSTILHI------AGLLEVPDQGNVIIANQLCNKLS 78
+L V + + G + AL+ SG GK+T++ + G +E G++ I+
Sbjct: 895 LLREVTGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIE----GDIRISG-----FP 945
Query: 79 DDKKSFLRCSKIGFVYQEHRLLMDFSVIENIIFPQIIAGINHKTAYQRAMDLLSYMDMSQ 138
+++F R S G+ Q +V E++I+ + + ++ M + M++ +
Sbjct: 946 KKQETFARIS--GYCEQNDIHSPQVTVRESLIYSAFLRLPKEVSKEEKMMFVDEVMELVE 1003
Query: 139 YANRRSS--------DISGGEQQRVAICRAIANKPLIILADEPTGNLDLKTAQQV 185
N + + +S +++R+ I + P II DEPT LD + A V
Sbjct: 1004 LDNLKDAIVGLPGVTGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIV 1058
Score = 27.9 bits (62), Expect = 2.4
Identities = 15/47 (31%), Positives = 23/47 (48%)
Query: 147 ISGGEQQRVAICRAIANKPLIILADEPTGNLDLKTAQQVFSILKYLV 193
ISGG+++RV I + DE + LD T Q+ L+ +V
Sbjct: 337 ISGGQKKRVTTGEMIVGPTKTLFMDEISTGLDSSTTYQIVKCLQQIV 383
>gnl|CDD|128765 smart00489, DEXDc3, DEAD-like helicases superfamily.
Length = 289
Score = 32.7 bits (75), Expect = 0.080
Identities = 14/45 (31%), Positives = 23/45 (51%), Gaps = 8/45 (17%)
Query: 10 QNVKHSYRQVGKPFPV----LENVHLSLKKGEIVALVSPSGTGKS 50
Y +P+P+ +E + L +G+I L SP+GTGK+
Sbjct: 1 LLFYFPY----EPYPIQYEFMEELKRVLDRGKIGILESPTGTGKT 41
>gnl|CDD|128764 smart00488, DEXDc2, DEAD-like helicases superfamily.
Length = 289
Score = 32.7 bits (75), Expect = 0.080
Identities = 14/45 (31%), Positives = 23/45 (51%), Gaps = 8/45 (17%)
Query: 10 QNVKHSYRQVGKPFPV----LENVHLSLKKGEIVALVSPSGTGKS 50
Y +P+P+ +E + L +G+I L SP+GTGK+
Sbjct: 1 LLFYFPY----EPYPIQYEFMEELKRVLDRGKIGILESPTGTGKT 41
>gnl|CDD|179346 PRK01889, PRK01889, GTPase RsgA; Reviewed.
Length = 356
Score = 32.6 bits (75), Expect = 0.086
Identities = 11/20 (55%), Positives = 14/20 (70%)
Query: 33 LKKGEIVALVSPSGTGKSTI 52
L G+ VAL+ SG GKST+
Sbjct: 192 LSGGKTVALLGSSGVGKSTL 211
>gnl|CDD|100796 PRK01156, PRK01156, chromosome segregation protein; Provisional.
Length = 895
Score = 32.6 bits (74), Expect = 0.094
Identities = 23/83 (27%), Positives = 41/83 (49%), Gaps = 10/83 (12%)
Query: 147 ISGGEQQ------RVAICR-AIANKPLIILADEPTGNLDLKTAQQVFSILKYLVVRSGL- 198
+SGGE+ RVA+ + +K L+I+ DEPT LD + I++Y + S
Sbjct: 802 LSGGEKTAVAFALRVAVAQFLNNDKSLLIM-DEPTAFLDEDRRTNLKDIIEYSLKDSSDI 860
Query: 199 -AALIATHNHDLASQMDRQITIR 220
++ +H+ +L S D ++
Sbjct: 861 PQVIMISHHRELLSVADVAYEVK 883
>gnl|CDD|167016 PRK00635, PRK00635, excinuclease ABC subunit A; Provisional.
Length = 1809
Score = 31.3 bits (71), Expect = 0.22
Identities = 29/113 (25%), Positives = 56/113 (49%), Gaps = 10/113 (8%)
Query: 113 QIIAGINHKTAYQRAMDL-LSYMDMSQYANRRSSDISGGEQQRVAICRAIANKPLII--L 169
+++ G+ + + +DL L Y+ R + +SGGEQ+R A+ + + + + I +
Sbjct: 448 EVLQGLKSRLSI--LIDLGLPYLT----PERALATLSGGEQERTALAKHLGAELIGITYI 501
Query: 170 ADEPTGNLDLKTAQQVFSILKYLVVRSGLAALIATHNHDLASQMDRQITIRDG 222
DEP+ L + ++ +++K L G L+ H+ + S DR I I G
Sbjct: 502 LDEPSIGLHPQDTHKLINVIKKL-RDQGNTVLLVEHDEQMISLADRIIDIGPG 553
Score = 31.0 bits (70), Expect = 0.25
Identities = 21/68 (30%), Positives = 32/68 (47%), Gaps = 4/68 (5%)
Query: 142 RRSSDISGGEQQRVAICRAIAN---KPLIILADEPTGNLDLKTAQQVFSILKYLVVRSGL 198
R S +SGGE QR+ + + KP + + DEPT L + + +L+ L G
Sbjct: 805 RPLSSLSGGEIQRLKLAYELLAPSKKPTLYVLDEPTTGLHTHDIKALIYVLQSL-THQGH 863
Query: 199 AALIATHN 206
+I HN
Sbjct: 864 TVVIIEHN 871
Score = 27.9 bits (62), Expect = 2.4
Identities = 11/27 (40%), Positives = 17/27 (62%)
Query: 26 LENVHLSLKKGEIVALVSPSGTGKSTI 52
L+N+ + EIV L SG+GKS++
Sbjct: 16 LKNISIEFCPREIVLLTGVSGSGKSSL 42
>gnl|CDD|178968 PRK00300, gmk, guanylate kinase; Provisional.
Length = 205
Score = 30.8 bits (71), Expect = 0.30
Identities = 9/21 (42%), Positives = 15/21 (71%)
Query: 34 KKGEIVALVSPSGTGKSTILH 54
++G ++ L PSG GKST++
Sbjct: 3 RRGLLIVLSGPSGAGKSTLVK 23
>gnl|CDD|173186 PRK14723, flhF, flagellar biosynthesis regulator FlhF; Provisional.
Length = 767
Score = 30.5 bits (69), Expect = 0.33
Identities = 13/30 (43%), Positives = 19/30 (63%)
Query: 24 PVLENVHLSLKKGEIVALVSPSGTGKSTIL 53
PVL + L +G ++ALV P+G GK+T
Sbjct: 173 PVLRDEDALLAQGGVLALVGPTGVGKTTTT 202
>gnl|CDD|128763 smart00487, DEXDc, DEAD-like helicases superfamily.
Length = 201
Score = 30.5 bits (69), Expect = 0.40
Identities = 16/66 (24%), Positives = 27/66 (40%), Gaps = 5/66 (7%)
Query: 153 QRVAICRAIANKPLIILADEP-TGNLDLKTAQQVFSILKYLVVRSGLAALIATHNHDLAS 211
Q+ AI ++ +ILA +G KT + L+ L G L+ +LA
Sbjct: 13 QKEAIEALLSGLRDVILAAPTGSG----KTLAALLPALEALKRGKGKRVLVLVPTRELAE 68
Query: 212 QMDRQI 217
Q ++
Sbjct: 69 QWAEEL 74
>gnl|CDD|139906 PRK13846, PRK13846, putative glycerol-3-phosphate acyltransferase
PlsX; Provisional.
Length = 316
Score = 29.0 bits (65), Expect = 1.0
Identities = 12/27 (44%), Positives = 20/27 (74%)
Query: 167 IILADEPTGNLDLKTAQQVFSILKYLV 193
I++ D TGN+ LKTA+ VF L++++
Sbjct: 225 IVVTDGFTGNIFLKTAEGVFDFLRHIL 251
>gnl|CDD|132307 TIGR03263, guanyl_kin, guanylate kinase. Members of this family
are the enzyme guanylate kinase, also called GMP
kinase. This enzyme transfers a phosphate from ATP to
GMP, yielding ADP and GDP.
Length = 180
Score = 28.6 bits (65), Expect = 1.2
Identities = 8/19 (42%), Positives = 13/19 (68%)
Query: 36 GEIVALVSPSGTGKSTILH 54
G ++ + PSG GKST++
Sbjct: 1 GLLIVISGPSGVGKSTLVK 19
>gnl|CDD|180787 PRK06995, flhF, flagellar biosynthesis regulator FlhF; Validated.
Length = 484
Score = 28.8 bits (65), Expect = 1.3
Identities = 12/28 (42%), Positives = 19/28 (67%)
Query: 24 PVLENVHLSLKKGEIVALVSPSGTGKST 51
PVL++ L +G + AL+ P+G GK+T
Sbjct: 244 PVLDSEDALLDRGGVFALMGPTGVGKTT 271
>gnl|CDD|173185 PRK14722, flhF, flagellar biosynthesis regulator FlhF; Provisional.
Length = 374
Score = 28.1 bits (62), Expect = 1.7
Identities = 11/29 (37%), Positives = 20/29 (68%)
Query: 23 FPVLENVHLSLKKGEIVALVSPSGTGKST 51
PVL++ +++G + AL+ P+G GK+T
Sbjct: 124 LPVLDSEDALMERGGVFALMGPTGVGKTT 152
>gnl|CDD|162983 TIGR02712, urea_carbox, urea carboxylase. Members of this family
are ATP-dependent urea carboxylase, including
characterized members from Oleomonas sagaranensis (alpha
class Proteobacterium) and yeasts such as Saccharomyces
cerevisiae. The allophanate hydrolase domain of the
yeast enzyme is not included in this model and is
represented by an adjacent gene in Oleomonas
sagaranensis. The fusion of urea carboxylase and
allophanate hydrolase is designated urea amidolyase. The
enzyme from Oleomonas sagaranensis was shown to be
highly active on acetamide and formamide as well as
urea.
Length = 1201
Score = 28.1 bits (63), Expect = 1.8
Identities = 13/40 (32%), Positives = 24/40 (60%)
Query: 24 PVLENVHLSLKKGEIVALVSPSGTGKSTILHIAGLLEVPD 63
PV + +++K G +++ +G+G T L I G ++VPD
Sbjct: 534 PVPQWKPITVKAGSTLSIGKIAGSGCRTYLAIRGGIDVPD 573
>gnl|CDD|178861 PRK00098, PRK00098, GTPase RsgA; Reviewed.
Length = 298
Score = 28.2 bits (64), Expect = 1.8
Identities = 17/59 (28%), Positives = 26/59 (44%), Gaps = 11/59 (18%)
Query: 4 AEVLLLQNVKHSYRQVGKPFPVLE------NVHLSLK---KGEIVALVSPSGTGKSTIL 53
++ + + YR +G + VLE LK G++ L SG GKST+L
Sbjct: 125 DDLEEARELLALYRAIG--YDVLELSAKEGEGLDELKPLLAGKVTVLAGQSGVGKSTLL 181
>gnl|CDD|163294 TIGR03499, FlhF, flagellar biosynthetic protein FlhF.
Length = 282
Score = 28.0 bits (63), Expect = 2.0
Identities = 11/21 (52%), Positives = 17/21 (80%)
Query: 33 LKKGEIVALVSPSGTGKSTIL 53
L++G ++ALV P+G GK+T L
Sbjct: 191 LEQGGVIALVGPTGVGKTTTL 211
>gnl|CDD|129705 TIGR00618, sbcc, exonuclease SbcC. This family is based on the
phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis,
Stanford University).
Length = 1042
Score = 28.0 bits (62), Expect = 2.2
Identities = 24/111 (21%), Positives = 46/111 (41%), Gaps = 11/111 (9%)
Query: 120 HKTAYQRAMDLLSYMDMSQYANRRSSDISGGEQQRVAICRAIANKPLI----------IL 169
H A + L D + R S+ +SGGE ++ A+A L+ +
Sbjct: 924 HVNARKYQGLALLVADAYTGSVRPSATLSGGETFLASLSLALALADLLSTSGGTVLDSLF 983
Query: 170 ADEPTGNLDLKTAQQVFSILKYLVVRSGLAALIATHNHDLASQMDRQITIR 220
DE G+LD + + IL + S + +I +H + ++ +I ++
Sbjct: 984 IDEGFGSLDEDSLDRAIGILDAIREGSKMIGII-SHVPEFRERIPHRILVK 1033
>gnl|CDD|161953 TIGR00604, rad3, DNA repair helicase (rad3). All proteins in
this family for which funcitons are known are DNA-DNA
helicases that funciton in the initiation of
transcription and nucleotide excision repair as part of
the TFIIH complex. This family is based on the
phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis,
Stanford University).
Length = 705
Score = 27.8 bits (62), Expect = 2.2
Identities = 11/27 (40%), Positives = 16/27 (59%)
Query: 27 ENVHLSLKKGEIVALVSPSGTGKSTIL 53
++ SL +G+ L PSGTGK+ L
Sbjct: 20 RDLKRSLDRGDEAILEMPSGTGKTISL 46
>gnl|CDD|183705 PRK12727, PRK12727, flagellar biosynthesis regulator FlhF;
Provisional.
Length = 559
Score = 28.0 bits (62), Expect = 2.2
Identities = 10/19 (52%), Positives = 16/19 (84%)
Query: 33 LKKGEIVALVSPSGTGKST 51
L++G ++ALV P+G GK+T
Sbjct: 347 LERGGVIALVGPTGAGKTT 365
>gnl|CDD|147939 pfam06048, DUF927, Domain of unknown function (DUF927). Family of
bacterial proteins of unknown function.
Length = 284
Score = 27.6 bits (62), Expect = 2.5
Identities = 12/33 (36%), Positives = 18/33 (54%), Gaps = 3/33 (9%)
Query: 24 PVLENVHLSLKKGEIVALVSPSGTGKSTILHIA 56
P+L+ + L +G V S TGK+T L +A
Sbjct: 182 PLLKLLGL---EGGGFHFVGDSSTGKTTALKLA 211
>gnl|CDD|129286 TIGR00182, plsX, fatty acid/phospholipid synthesis protein PlsX.
This protein of fatty acid/phospholipid biosynthesis,
called PlsX after the member in Streptococcus
pneumoniae, is proposed to be a phosphate
acyltransferase that partners with PlsY (TIGR00023) in a
two-step 1-acylglycerol-3-phosphate biosynthesis pathway
alternative to the one-step PlsB (EC 2.3.1.15) pathway.
Length = 322
Score = 27.4 bits (61), Expect = 2.7
Identities = 14/43 (32%), Positives = 23/43 (53%), Gaps = 7/43 (16%)
Query: 167 IILADEPTGNLDLKTAQQVFSILKYLV-------VRSGLAALI 202
+++ D TGN+ LKT + V + ++ +RS LAAL
Sbjct: 212 VLVCDGFTGNVVLKTMEGVAKTILSILKDEYKSTLRSKLAALF 254
>gnl|CDD|185099 PRK15177, PRK15177, Vi polysaccharide export ATP-binding protein
VexC; Provisional.
Length = 213
Score = 27.7 bits (61), Expect = 2.9
Identities = 12/44 (27%), Positives = 25/44 (56%)
Query: 25 VLENVHLSLKKGEIVALVSPSGTGKSTILHIAGLLEVPDQGNVI 68
VL+ + E + +++ G+GK+T+ + L+ PD+G+ I
Sbjct: 2 VLDKTDFVMGYHEHIGILAAPGSGKTTLTRLLCGLDAPDEGDFI 45
>gnl|CDD|178366 PLN02766, PLN02766, coniferyl-aldehyde dehydrogenase.
Length = 501
Score = 27.5 bits (61), Expect = 3.0
Identities = 33/132 (25%), Positives = 57/132 (43%), Gaps = 42/132 (31%)
Query: 112 PQIIAGINHKTAYQRAMDLLSYMDMSQYANRRSSDISGGEQQRVAICRAIANKPLIILAD 171
PQ+ K +++ +LSY++ + ++ ++GG + +K I
Sbjct: 343 PQV-----DKQQFEK---ILSYIEHGK--REGATLLTGG--------KPCGDKGYYI--- 381
Query: 172 EPTGNLDLK----TAQQ-----VFSILKYLVV----------RSGLAALIATHNHDLASQ 212
EPT D+ AQ V S++K+ V + GLAA I T + D+A+
Sbjct: 382 EPTIFTDVTEDMKIAQDEIFGPVMSLMKFKTVEEAIKKANNTKYGLAAGIVTKDLDVANT 441
Query: 213 MDRQITIRDGMI 224
+ R +IR G I
Sbjct: 442 VSR--SIRAGTI 451
>gnl|CDD|178801 PRK00024, PRK00024, hypothetical protein; Reviewed.
Length = 224
Score = 27.0 bits (61), Expect = 4.4
Identities = 15/35 (42%), Positives = 18/35 (51%), Gaps = 5/35 (14%)
Query: 188 ILKYLVVRSGLAALIATHNH---DLA-SQMDRQIT 218
I+K ++ AALI HNH D SQ D IT
Sbjct: 157 IVKR-ALKLNAAALILAHNHPSGDPEPSQADILIT 190
>gnl|CDD|180213 PRK05703, flhF, flagellar biosynthesis regulator FlhF; Validated.
Length = 424
Score = 26.8 bits (60), Expect = 4.7
Identities = 13/21 (61%), Positives = 17/21 (80%)
Query: 33 LKKGEIVALVSPSGTGKSTIL 53
LK+G +VALV P+G GK+T L
Sbjct: 218 LKQGGVVALVGPTGVGKTTTL 238
>gnl|CDD|131688 TIGR02640, gas_vesic_GvpN, gas vesicle protein GvpN. Members of
this family are the GvpN protein associated with the
production of gas vesicles produced in some prokaryotes
to give cells buoyancy. This family belongs to a larger
family of ATPases (pfam07728).
Length = 262
Score = 26.7 bits (59), Expect = 4.7
Identities = 14/31 (45%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
Query: 33 LKKGEIVALVSPSGTGKSTI-LHIAGLLEVP 62
LK G V L P+GTGK+T+ +H+A + P
Sbjct: 18 LKSGYPVHLRGPAGTGKTTLAMHVARKRDRP 48
>gnl|CDD|173184 PRK14721, flhF, flagellar biosynthesis regulator FlhF; Provisional.
Length = 420
Score = 26.8 bits (59), Expect = 4.9
Identities = 8/19 (42%), Positives = 15/19 (78%)
Query: 33 LKKGEIVALVSPSGTGKST 51
+++G + AL+ P+G GK+T
Sbjct: 188 IEQGGVYALIGPTGVGKTT 206
>gnl|CDD|182810 PRK10885, cca, multifunctional tRNA nucleotidyl
transferase/2'3'-cyclic
phosphodiesterase/2'nucleotidase/phosphatase; Reviewed.
Length = 409
Score = 26.7 bits (60), Expect = 4.9
Identities = 8/10 (80%), Positives = 9/10 (90%)
Query: 16 YRQVGKPFPV 25
Y+QVGK FPV
Sbjct: 39 YQQVGKDFPV 48
>gnl|CDD|162806 TIGR02322, phosphon_PhnN, phosphonate metabolism
protein/1,5-bisphosphokinase (PRPP-forming) PhnN.
Members of this family resemble PhnN of phosphonate
utilization operons, where different such operons
confer the ability to use somewhat different profiles
of C-P bond-containing compounds (see PubMed:15231805),
including phosphites as well as phosphonates. PhnN in
E. coli shows considerable homology to guanylate
kinases (EC 2.7.4.8), and has actually been shown to
act as a ribose 1,5-bisphosphokinase (PRPP forming).
This suggests an analogous kinase reaction for
phosphonate metabolism, converting
5-phosphoalpha-1-(methylphosphono)ribose to
methylphosphono-PRPP.
Length = 179
Score = 26.6 bits (59), Expect = 6.0
Identities = 10/21 (47%), Positives = 14/21 (66%)
Query: 36 GEIVALVSPSGTGKSTILHIA 56
G ++ +V PSG GK T+L A
Sbjct: 1 GRLIYVVGPSGAGKDTLLDYA 21
>gnl|CDD|181743 PRK09270, PRK09270, nucleoside triphosphate hydrolase
domain-containing protein; Reviewed.
Length = 229
Score = 26.4 bits (59), Expect = 6.2
Identities = 8/14 (57%), Positives = 9/14 (64%)
Query: 38 IVALVSPSGTGKST 51
IV + P G GKST
Sbjct: 35 IVGIAGPPGAGKST 48
>gnl|CDD|180875 PRK07196, fliI, flagellum-specific ATP synthase; Validated.
Length = 434
Score = 26.4 bits (58), Expect = 6.7
Identities = 15/42 (35%), Positives = 26/42 (61%), Gaps = 3/42 (7%)
Query: 28 NVHLSLKKGEIVALVSPSGTGKSTILHIAGLLEVPDQGNVII 69
N L++ KG+ V L++ SG GKS +L G++ Q +V++
Sbjct: 147 NGLLTIGKGQRVGLMAGSGVGKSVLL---GMITRYTQADVVV 185
>gnl|CDD|162630 TIGR01970, DEAH_box_HrpB, ATP-dependent helicase HrpB. This
model represents HrpB, one of two related but
uncharacterized DEAH-box ATP-dependent helicases in
many Proteobacteria, but also in a few species of other
lineages. The member from Rhizobium meliloti has been
designated HelO. HrpB is typically about 800 residues
in length, while its paralog HrpA (TIGR01967), also
uncharacterized, is about 1300 amino acids long.
Related characterized eukarotic proteins are RNA
helicases associated with pre-mRNA processing.
Length = 819
Score = 26.3 bits (58), Expect = 6.7
Identities = 18/46 (39%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
Query: 24 PVLENVHLSLKKGEIVALVSPSGTGKSTILHIAGLLEVPDQGNVII 69
VL + +L V L +P G GKST + +A LL+ P G II
Sbjct: 5 AVLPALRDALAAHPQVVLEAPPGAGKSTAVPLA-LLDAPGIGGKII 49
>gnl|CDD|179157 PRK00889, PRK00889, adenylylsulfate kinase; Provisional.
Length = 175
Score = 26.1 bits (58), Expect = 7.5
Identities = 24/71 (33%), Positives = 35/71 (49%), Gaps = 15/71 (21%)
Query: 34 KKGEIVALVSPSGTGKSTI-------LHIAGL-LEVPDQGNVIIANQLCNKLS---DDKK 82
++G V SG GK+TI L AG +EV D G+ + N L L +D+
Sbjct: 2 QRGVTVWFTGLSGAGKTTIARALAEKLREAGYPVEVLD-GDAVRTN-LSKGLGFSKEDRD 59
Query: 83 SFLRCSKIGFV 93
+ +R +IGFV
Sbjct: 60 TNIR--RIGFV 68
>gnl|CDD|128807 smart00534, MUTSac, ATPase domain of DNA mismatch repair MUTS
family.
Length = 185
Score = 26.0 bits (58), Expect = 8.6
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 187 SILKYLVVRSGLAALIATHNHDLASQMD 214
++L+YL+ + G L ATH H+L D
Sbjct: 102 AVLEYLLEKIGALTLFATHYHELTKLAD 129
>gnl|CDD|163225 TIGR03348, VI_IcmF, type VI secretion protein IcmF. Members of
this protein family are IcmF homologs and tend to be
associated with type VI secretion systems.
Length = 1169
Score = 25.8 bits (57), Expect = 8.7
Identities = 8/18 (44%), Positives = 14/18 (77%)
Query: 41 LVSPSGTGKSTILHIAGL 58
++ P G+GK+T+L +GL
Sbjct: 116 VIGPPGSGKTTLLQNSGL 133
>gnl|CDD|180637 PRK06599, PRK06599, DNA topoisomerase I; Validated.
Length = 675
Score = 26.0 bits (58), Expect = 9.3
Identities = 20/56 (35%), Positives = 24/56 (42%), Gaps = 19/56 (33%)
Query: 156 AICRAIANKPLIILADEPTGNLDLKTAQQVFSILKYLV-----------VRSGLAA 200
A+ AI N P I ++DL AQQ L YLV VR GL+A
Sbjct: 120 AVQEAIEN-PRDI-------DMDLVDAQQARRALDYLVGFKLSPLLWKKVRRGLSA 167
>gnl|CDD|151516 pfam11071, DUF2872, Protein of unknown function (DUF2872). This
bacterial family of proteins has no known function.
Length = 141
Score = 25.7 bits (57), Expect = 9.4
Identities = 17/44 (38%), Positives = 22/44 (50%), Gaps = 11/44 (25%)
Query: 160 AIA-NKPLIILADE----PTGNLD------LKTAQQVFSILKYL 192
A A KPLI+L E P +D +T +QV ILKY+
Sbjct: 96 AAALGKPLIVLHPEELIHPLKEVDAAALAVAETPEQVVEILKYV 139
>gnl|CDD|181925 PRK09518, PRK09518, bifunctional cytidylate kinase/GTPase Der;
Reviewed.
Length = 712
Score = 25.9 bits (57), Expect = 9.4
Identities = 8/17 (47%), Positives = 12/17 (70%)
Query: 36 GEIVALVSPSGTGKSTI 52
IVA+ P+G GKS++
Sbjct: 1 MIIVAIDGPAGVGKSSV 17
Database: CddB
Posted date: Feb 4, 2011 9:54 PM
Number of letters in database: 5,994,473
Number of sequences in database: 21,608
Lambda K H
0.321 0.136 0.380
Gapped
Lambda K H
0.267 0.0636 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21608
Number of Hits to DB: 3,631,702
Number of extensions: 228535
Number of successful extensions: 1136
Number of sequences better than 10.0: 1
Number of HSP's gapped: 941
Number of HSP's successfully gapped: 360
Length of query: 227
Length of database: 5,994,473
Length adjustment: 90
Effective length of query: 137
Effective length of database: 4,049,753
Effective search space: 554816161
Effective search space used: 554816161
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.2 bits)