HHsearch alignment for GI: 254780872 and conserved domain: PRK10909
>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional.
Probab=98.36 E-value=1.7e-06 Score=60.87 Aligned_cols=120 Identities=12% Similarity=0.076 Sum_probs=80.0
Q ss_pred HHHHHHHHHHCCCCCCCCCCHHHCCEEEECCCHHHHHHHHHHCCC-CEEEECCHHHHHHHHHHHHHCCCC-CCCCCCCCC
Q ss_conf 999999886518764445880016288856985699999973198-169952135677888865310112-111122100
Q gi|254780872|r 45 KYIQDKIMQHFQCKSDDTHPFKGLRILDLGCGGGLLSEPMAQMGA-TVTGIDPSTKNIAIAKNHANMKNI-NIDYRVSCA 122 (254)
Q Consensus 45 ~~I~~~i~~~~~~~~~~~~~l~g~~VLDiGCG~G~~s~~la~~g~-~V~giD~S~~~i~~Ak~~a~~~~~-~i~~~~~~~ 122 (254)
T Consensus 37 drvREalFn~L~~------~i~~~~vLDLFAGSGalGlEALSRGA~~v~fVE~~~~~~~~i~~N~~~l~~~~~~ii~~da 110 (198)
T PRK10909 37 DRVRETLFNWLAP------VIVDARCLDCFAGSGALGLEALSRYAAGATLLEMDRAVSQQLIKNLATLKAGNARVVNTNA 110 (198)
T ss_pred HHHHHHHHHHHHH------HCCCCEEEECCCCCCHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHHCCCCEEEEEHHH
T ss_conf 8899999987576------4299879982777468899999879978999978999999999999984888679995569
Q ss_pred CC-CCCCCCCHHHHEECCCHHCCCCHHHHHHHH--HHHCCCCCEEEEECCCC
Q ss_conf 12-321115301300124310268888998888--75213332157743676
Q gi|254780872|r 123 EE-IAETDEKFDIILNMEVIEHVDNIPYFIKTC--CSLLLSNGLMFISTINR 171 (254)
Q Consensus 123 ~~-l~~~~~~FD~V~~~~vleHv~d~~~~l~~~--~~~LkpgG~liist~Nr 171 (254)
T Consensus 111 ~~~L~~~~~~fDlIF~DPPY~-~~~~~~~l~~l~~~~~L~~~gliiiE~~~~ 161 (198)
T PRK10909 111 LSFLAQPGTPHNVVFVDPPFR-KGLLEETINLLEQNGWLADDALIYVESEVE 161 (198)
T ss_pred HHHHHCCCCCEEEEEECCCCC-CCHHHHHHHHHHHCCCCCCCCEEEEEECCC
T ss_conf 998625599521899899976-555999999999888918996999995488