HHsearch alignment for GI: 254780872 and conserved domain: PRK10909

>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional.
Probab=98.36  E-value=1.7e-06  Score=60.87  Aligned_cols=120  Identities=12%  Similarity=0.076  Sum_probs=80.0

Q ss_pred             HHHHHHHHHHCCCCCCCCCCHHHCCEEEECCCHHHHHHHHHHCCC-CEEEECCHHHHHHHHHHHHHCCCC-CCCCCCCCC
Q ss_conf             999999886518764445880016288856985699999973198-169952135677888865310112-111122100
Q gi|254780872|r   45 KYIQDKIMQHFQCKSDDTHPFKGLRILDLGCGGGLLSEPMAQMGA-TVTGIDPSTKNIAIAKNHANMKNI-NIDYRVSCA  122 (254)
Q Consensus        45 ~~I~~~i~~~~~~~~~~~~~l~g~~VLDiGCG~G~~s~~la~~g~-~V~giD~S~~~i~~Ak~~a~~~~~-~i~~~~~~~  122 (254)
T Consensus        37 drvREalFn~L~~------~i~~~~vLDLFAGSGalGlEALSRGA~~v~fVE~~~~~~~~i~~N~~~l~~~~~~ii~~da  110 (198)
T PRK10909         37 DRVRETLFNWLAP------VIVDARCLDCFAGSGALGLEALSRYAAGATLLEMDRAVSQQLIKNLATLKAGNARVVNTNA  110 (198)
T ss_pred             HHHHHHHHHHHHH------HCCCCEEEECCCCCCHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHHCCCCEEEEEHHH
T ss_conf             8899999987576------4299879982777468899999879978999978999999999999984888679995569


Q ss_pred             CC-CCCCCCCHHHHEECCCHHCCCCHHHHHHHH--HHHCCCCCEEEEECCCC
Q ss_conf             12-321115301300124310268888998888--75213332157743676
Q gi|254780872|r  123 EE-IAETDEKFDIILNMEVIEHVDNIPYFIKTC--CSLLLSNGLMFISTINR  171 (254)
Q Consensus       123 ~~-l~~~~~~FD~V~~~~vleHv~d~~~~l~~~--~~~LkpgG~liist~Nr  171 (254)
T Consensus       111 ~~~L~~~~~~fDlIF~DPPY~-~~~~~~~l~~l~~~~~L~~~gliiiE~~~~  161 (198)
T PRK10909        111 LSFLAQPGTPHNVVFVDPPFR-KGLLEETINLLEQNGWLADDALIYVESEVE  161 (198)
T ss_pred             HHHHHCCCCCEEEEEECCCCC-CCHHHHHHHHHHHCCCCCCCCEEEEEECCC
T ss_conf             998625599521899899976-555999999999888918996999995488