HHsearch alignment for GI: 254780872 and conserved domain: PRK11933
>PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed.
Probab=98.27 E-value=2.6e-06 Score=59.83 Aligned_cols=106 Identities=16% Similarity=0.203 Sum_probs=71.9
Q ss_pred CCHHHCCEEEECCCHHHHHHHHHHC---CCCEEEECCHHHHHHHHHHHHHCCCC-CCCCCCCCCCCCCC-CCCCHHHHE-
Q ss_conf 8800162888569856999999731---98169952135677888865310112-11112210012321-115301300-
Q gi|254780872|r 63 HPFKGLRILDLGCGGGLLSEPMAQM---GATVTGIDPSTKNIAIAKNHANMKNI-NIDYRVSCAEEIAE-TDEKFDIIL- 136 (254)
Q Consensus 63 ~~l~g~~VLDiGCG~G~~s~~la~~---g~~V~giD~S~~~i~~Ak~~a~~~~~-~i~~~~~~~~~l~~-~~~~FD~V~- 136 (254)
T Consensus 110 ~p~pge~VLDlCAAPGGKtt~la~~m~~~G~lvAnd~~~~R~~~L~~n~~r~G~~n~~vt~~d~~~~~~~~~~~FD~ILv 189 (471)
T PRK11933 110 DDNAPQRVLDMAAAPGSKTTQIAALMNNQGALVANEYSASRVKVLHANISRCGVSNVALTHFDGRVFGAALPEMFDAILL 189 (471)
T ss_pred CCCCCCEEEEECCCCCHHHHHHHHHCCCCCEEEEEECCHHHHHHHHHHHHHCCCCCEEEEECCHHHHHHHCCCCCCEEEE
T ss_conf 88999989995778548999999975899669998388999999999999719984799935866740323010667998
Q ss_pred ---EC--CCHHCCCC----------------HHHHHHHHHHHCCCCCEEEEEC
Q ss_conf ---12--43102688----------------8899888875213332157743
Q gi|254780872|r 137 ---NM--EVIEHVDN----------------IPYFIKTCCSLLLSNGLMFIST 168 (254)
Q Consensus 137 ---~~--~vleHv~d----------------~~~~l~~~~~~LkpgG~liist 168 (254)
T Consensus 190 DaPCSG~G~~rk~p~~~~~w~~~~~~~~~~~Q~~iL~~A~~~LkpGG~LVYST 242 (471)
T PRK11933 190 DAPCSGEGTVRKDPDALKNWSPESNLEIAATQRELIESAFHALKPGGTLVYST 242 (471)
T ss_pred CCCCCCCEEECCCHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEC
T ss_conf 78888873355597576418987999999999999999998738896899981