HHsearch alignment for GI: 254780872 and conserved domain: PRK13341
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed.
Probab=95.81 E-value=0.18 Score=29.83 Aligned_cols=162 Identities=14% Similarity=0.138 Sum_probs=89.8
Q ss_pred HHHHHHHHHHHHCCCCCCCCCCHHHCCEEEECCCHHHHHHHHHHC---CCCEEEECCHHHHHHHHHHHHHCCCC-CCCCC
Q ss_conf 599999998865187644458800162888569856999999731---98169952135677888865310112-11112
Q gi|254780872|r 43 RIKYIQDKIMQHFQCKSDDTHPFKGLRILDLGCGGGLLSEPMAQM---GATVTGIDPSTKNIAIAKNHANMKNI-NIDYR 118 (254)
Q Consensus 43 R~~~I~~~i~~~~~~~~~~~~~l~g~~VLDiGCG~G~~s~~la~~---g~~V~giD~S~~~i~~Ak~~a~~~~~-~i~~~ 118 (254)
T Consensus 476 ~l~~~~~rl~~~~~~q-------r~~~vl~l~~~sll~~~~~l~~~peggv~~~~~~~~~~~rL~aQl~lLdpL~RP~Ll 548 (726)
T PRK13341 476 RLRILRDRLWSGITWQ-------RHDRVLNLANRSLLWALEPLRAVPEGGVTVLCESSDDIVRLEAQLDLLDPLGRPVLL 548 (726)
T ss_pred HHHHHHHHHHCCCCCC-------CCCEEEEECCCCHHHHHHHHHHCCCCCEEEEECCHHHHHHHHHHHHHCCHHCCCCEE
T ss_conf 9999999984336656-------343599833851265267786189986699837888999999998746811197112
Q ss_pred CCCCCCCC--CCCCCHHHHEECCCHHCCCCHH--HHHHHHHHHCCCCCEEEE--ECCCCCCHHHHH-----------HHH
Q ss_conf 21001232--1115301300124310268888--998888752133321577--436766024564-----------156
Q gi|254780872|r 119 VSCAEEIA--ETDEKFDIILNMEVIEHVDNIP--YFIKTCCSLLLSNGLMFI--STINRNLKAMLL-----------AII 181 (254)
Q Consensus 119 ~~~~~~l~--~~~~~FD~V~~~~vleHv~d~~--~~l~~~~~~LkpgG~lii--st~Nr~~~s~~~-----------~i~ 181 (254)
T Consensus 549 ~~~~~~l~~L~~~~~FE~IgGR~~~~~l~~~~~~~~~q~L~~~l~p~g~l~Ll~S~P~~Gpa~all~~~~~~~~~l~~L~ 628 (726)
T PRK13341 549 DAGLLALKYLPANLQFEWIGGRNGLDDLLYKADEELWQQLTEKLTPNGGLRLLISQPEAGPALALLLKAPVEDKLLSALL 628 (726)
T ss_pred ECCCHHHHHCCCCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCHHHHHCCCCCHHHHHHHHH
T ss_conf 16711465379876424783332002342256999999999865998669986357764807887356940489999999
Q ss_pred HHHHHCCCCCCCCCCHHHCCCHHHHHHHHHHCCCEEEEE
Q ss_conf 554310467899857122538899999999869838885
Q gi|254780872|r 182 GAEYLLQWLPKGTHQYDKFIKPTEMECFLAANKVKIIDR 220 (254)
Q Consensus 182 ~ae~il~~~P~gtH~~~~Fi~p~el~~~l~~~g~~~~~~ 220 (254)
T Consensus 629 ~aEe--~wl~~~-------~~~~~Lqq~le~~gwsl~~e 658 (726)
T PRK13341 629 EAEE--LWLKSQ-------SMPALLQQQLEEAGWSLGIE 658 (726)
T ss_pred HHHH--HHHHCC-------CCHHHHHHHHHHCCCCCEEE
T ss_conf 9999--996268-------88599999999748845351