HHsearch alignment for GI: 254780872 and conserved domain: PTZ00146
>PTZ00146 fibrillarin; Provisional.
Probab=97.83 E-value=0.00049 Score=45.67 Aligned_cols=135 Identities=18% Similarity=0.193 Sum_probs=78.3
Q ss_pred HHCCEEEECCCHHHHHHHHHHC-C--CCEEEECCHHHH----HHHHHHHHHCCCCCCCCCCCCCCCC---CCCCCCHHHH
Q ss_conf 0162888569856999999731-9--816995213567----7888865310112111122100123---2111530130
Q gi|254780872|r 66 KGLRILDLGCGGGLLSEPMAQM-G--ATVTGIDPSTKN----IAIAKNHANMKNINIDYRVSCAEEI---AETDEKFDII 135 (254)
Q Consensus 66 ~g~~VLDiGCG~G~~s~~la~~-g--~~V~giD~S~~~----i~~Ak~~a~~~~~~i~~~~~~~~~l---~~~~~~FD~V 135 (254)
T Consensus 135 ~GskVLYLGAasGTTVSHVSDIVG~~G~VYAVEfSpr~~RdLl~lA~~-----R~NIvPIleDAr~P~kYr~lV~~VDvI 209 (296)
T PTZ00146 135 PGSKVLYLGAASGTTVSHVSDLVGPEGVVYAVEFSHRSGRDLVEMAKR-----RTNIVPIIEDARYPQKYRMLVPMVDCI 209 (296)
T ss_pred CCCEEEEECCCCCCCHHHHHHHCCCCCEEEEEEECCHHHHHHHHHHHC-----CCCCEEEECCCCCHHHHHHHCCCCCEE
T ss_conf 999899851467986556665017886199997064668899999722-----798335777789746755424555589
Q ss_pred EECCCHHCCCCH-HHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCCCCHHHCCCHHHHHHHHHHCC
Q ss_conf 012431026888-8998888752133321577436766024564156554310467899857122538899999999869
Q gi|254780872|r 136 LNMEVIEHVDNI-PYFIKTCCSLLLSNGLMFISTINRNLKAMLLAIIGAEYLLQWLPKGTHQYDKFIKPTEMECFLAANK 214 (254)
Q Consensus 136 ~~~~vleHv~d~-~~~l~~~~~~LkpgG~liist~Nr~~~s~~~~i~~ae~il~~~P~gtH~~~~Fi~p~el~~~l~~~g 214 (254)
T Consensus 210 f~-DVAQ--pdQarI~~~Na~~FLK~gG~~~i~IKArsIDst-------------~~p~----~VF---~~Ev~kL~~~~ 266 (296)
T PTZ00146 210 FA-DVAQ--PDQARIVALNAQHFLKNGGHFVISIKANCIDST-------------ADPE----VVF---ASEVQKLKKEG 266 (296)
T ss_pred EE-CCCC--HHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCC-------------CCHH----HHH---HHHHHHHHHCC
T ss_conf 96-1787--658999999999853169889999972663256-------------7989----999---99999998728
Q ss_pred CEEEEEEEEEECCCCC
Q ss_conf 8388855057667777
Q gi|254780872|r 215 VKIIDRVGVVYNVFCN 230 (254)
Q Consensus 215 ~~~~~~~g~~~~p~~~ 230 (254)
T Consensus 267 f~~~e~v--~LePy~r 280 (296)
T PTZ00146 267 LKPKEQL--TLEPFER 280 (296)
T ss_pred CCEEEEE--ECCCCCC
T ss_conf 9636887--0477778