HHsearch alignment for GI: 254780872 and conserved domain: pfam07021
>pfam07021 MetW Methionine biosynthesis protein MetW. This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins. Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In Pseudomonas putida, as in gram-positive bacteria and certain fungi, the second and third steps are a direct sulfhydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells.
Probab=99.83 E-value=4.3e-20 Score=145.26 Aligned_cols=147 Identities=19% Similarity=0.250 Sum_probs=108.3
Q ss_pred HHCCEEEECCCHHHHHHHHHH-CCCCEEEECCHHHHHHHHHHHHHCCCCCCCCCCCCCCC--CCCCCCCHHHHEECCCHH
Q ss_conf 016288856985699999973-19816995213567788886531011211112210012--321115301300124310
Q gi|254780872|r 66 KGLRILDLGCGGGLLSEPMAQ-MGATVTGIDPSTKNIAIAKNHANMKNINIDYRVSCAEE--IAETDEKFDIILNMEVIE 142 (254)
Q Consensus 66 ~g~~VLDiGCG~G~~s~~la~-~g~~V~giD~S~~~i~~Ak~~a~~~~~~i~~~~~~~~~--l~~~~~~FD~V~~~~vle 142 (254)
T Consensus 13 ~~srVLDlGCG~G~ll~~L~~~k~v~~~GvEid~~~v~~a~~----kg~~V--i~~D~d~~l~~f~d~sFD~VIls~vLq 86 (193)
T pfam07021 13 PGSRVLDLGCGDGSLLYLLQEEKQVDGRGIELDAAGVAECVA----KGLSV--IQGDADKGLEHFPDKSFDYVILSQTLQ 86 (193)
T ss_pred CCCEEEEECCCCCHHHHHHHHCCCCCEEEECCCHHHHHHHHH----CCCCE--ECCCHHHCHHHCCCCCCCEEEHHHHHH
T ss_conf 969899836889899999987669876983389999999986----47954--507744597457767803786987998
Q ss_pred CCCCHHHHHHHHHHHCCCCCEEEEECCCCCCH-HHHHHHHHHHH-HCCCCCCCCCCH-----HHCCCHHHHHHHHHHCCC
Q ss_conf 26888899888875213332157743676602-45641565543-104678998571-----225388999999998698
Q gi|254780872|r 143 HVDNIPYFIKTCCSLLLSNGLMFISTINRNLK-AMLLAIIGAEY-LLQWLPKGTHQY-----DKFIKPTEMECFLAANKV 215 (254)
Q Consensus 143 Hv~d~~~~l~~~~~~LkpgG~liist~Nr~~~-s~~~~i~~ae~-il~~~P~gtH~~-----~~Fi~p~el~~~l~~~g~ 215 (254)
T Consensus 87 hl~~P~~vL~EmlRV---gk~~IVSfPNf~hw~~R~~ll~~GrmPvt~~lp---~~WydTpnih~~Ti~DFe~lc~~~~i 160 (193)
T pfam07021 87 ATRNPREVLDELLRI---GRRAIVSFPNFGHWRVRWSLLSRGRMPVTDLLP---YTWYDTPNIHFCTIRDFEELCEELNL 160 (193)
T ss_pred HHCCCHHHHHHHHHH---CCEEEEEECCHHHHHHHHHHHHCCCCCCCCCCC---CCCCCCCCCCCCCHHHHHHHHHHCCC
T ss_conf 752819999998512---686999943614799999999478755589999---76148998474459999999998899
Q ss_pred EEEEEEEEE
Q ss_conf 388855057
Q gi|254780872|r 216 KIIDRVGVV 224 (254)
Q Consensus 216 ~~~~~~g~~ 224 (254)
T Consensus 161 ~I~~~~~l~ 169 (193)
T pfam07021 161 KVEDRAALD 169 (193)
T ss_pred EEEEEEEEC
T ss_conf 899999975