BLASTP 2.2.22 [Sep-27-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= gi|254780872|ref|YP_003065285.1| 3-demethylubiquinone-9
3-methyltransferase [Candidatus Liberibacter asiaticus str. psy62]
(254 letters)
Database: las_proteome
1233 sequences; 328,796 total letters
Searching...................................................done
>gi|254780872|ref|YP_003065285.1| 3-demethylubiquinone-9 3-methyltransferase [Candidatus Liberibacter
asiaticus str. psy62]
Length = 254
Score = 531 bits (1368), Expect = e-153, Method: Compositional matrix adjust.
Identities = 254/254 (100%), Positives = 254/254 (100%)
Query: 1 MKKKYPNYTTKNQDAINQFSNIASEWWEPTGKFKPLHQINPVRIKYIQDKIMQHFQCKSD 60
MKKKYPNYTTKNQDAINQFSNIASEWWEPTGKFKPLHQINPVRIKYIQDKIMQHFQCKSD
Sbjct: 1 MKKKYPNYTTKNQDAINQFSNIASEWWEPTGKFKPLHQINPVRIKYIQDKIMQHFQCKSD 60
Query: 61 DTHPFKGLRILDLGCGGGLLSEPMAQMGATVTGIDPSTKNIAIAKNHANMKNINIDYRVS 120
DTHPFKGLRILDLGCGGGLLSEPMAQMGATVTGIDPSTKNIAIAKNHANMKNINIDYRVS
Sbjct: 61 DTHPFKGLRILDLGCGGGLLSEPMAQMGATVTGIDPSTKNIAIAKNHANMKNINIDYRVS 120
Query: 121 CAEEIAETDEKFDIILNMEVIEHVDNIPYFIKTCCSLLLSNGLMFISTINRNLKAMLLAI 180
CAEEIAETDEKFDIILNMEVIEHVDNIPYFIKTCCSLLLSNGLMFISTINRNLKAMLLAI
Sbjct: 121 CAEEIAETDEKFDIILNMEVIEHVDNIPYFIKTCCSLLLSNGLMFISTINRNLKAMLLAI 180
Query: 181 IGAEYLLQWLPKGTHQYDKFIKPTEMECFLAANKVKIIDRVGVVYNVFCNKWQLSAKNMD 240
IGAEYLLQWLPKGTHQYDKFIKPTEMECFLAANKVKIIDRVGVVYNVFCNKWQLSAKNMD
Sbjct: 181 IGAEYLLQWLPKGTHQYDKFIKPTEMECFLAANKVKIIDRVGVVYNVFCNKWQLSAKNMD 240
Query: 241 VNYMVLGHLPKTEQ 254
VNYMVLGHLPKTEQ
Sbjct: 241 VNYMVLGHLPKTEQ 254
>gi|254780959|ref|YP_003065372.1| putative hydrolase serine protease transmembrane protein
[Candidatus Liberibacter asiaticus str. psy62]
Length = 302
Score = 30.8 bits (68), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
Query: 10 TKNQDAINQFSNIASEWWEPTGKFK-PLHQINPVRIKYIQDKIMQ 53
+ Q + +F I + + EP FK P +N R+KY+Q +IM+
Sbjct: 29 ARQQAIVTRFGKIHATYREPGIYFKMPFSFMNVDRVKYLQKQIMR 73
>gi|254780875|ref|YP_003065288.1| protoporphyrinogen oxidase (methyltransferase) protein [Candidatus
Liberibacter asiaticus str. psy62]
Length = 264
Score = 30.8 bits (68), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 38/75 (50%), Gaps = 8/75 (10%)
Query: 68 LRILDLGCGGG-----LLSEPMAQMGATVTGIDPSTKNIAIAKNHANMKNINIDYRVSCA 122
+RILDLG G G LL E G G+D S K + IAK++A ++ + +
Sbjct: 99 VRILDLGTGTGAVCLALLKESPFFKG---VGVDISCKALEIAKSNAVTNGVSERFDTLQS 155
Query: 123 EEIAETDEKFDIILN 137
+ + + FD+I++
Sbjct: 156 DWFSSVEGLFDVIVS 170
>gi|254780941|ref|YP_003065354.1| GTP-binding protein Era [Candidatus Liberibacter asiaticus str.
psy62]
Length = 311
Score = 25.0 bits (53), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 22/36 (61%), Gaps = 4/36 (11%)
Query: 96 PSTKNIAIAKNHANMKNINIDYRVSCAEEIAETDEK 131
PS K I + KN N+K I+++ + +EIAE E+
Sbjct: 253 PSQKKIMLGKNGQNIKTISLEAK----KEIAEILEQ 284
>gi|255764511|ref|YP_003065518.2| S-adenosyl-methyltransferase MraW [Candidatus Liberibacter
asiaticus str. psy62]
Length = 341
Score = 23.9 bits (50), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 12/32 (37%), Positives = 15/32 (46%)
Query: 64 PFKGLRILDLGCGGGLLSEPMAQMGATVTGID 95
P G ILD G G S +MG+ V +D
Sbjct: 34 PAPGKVILDATFGAGGYSRSFCKMGSNVIALD 65
>gi|254781011|ref|YP_003065424.1| orotate phosphoribosyltransferase [Candidatus Liberibacter
asiaticus str. psy62]
Length = 228
Score = 23.9 bits (50), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 10/26 (38%), Positives = 15/26 (57%)
Query: 46 YIQDKIMQHFQCKSDDTHPFKGLRIL 71
Y++ K +H Q + H FKG R+L
Sbjct: 105 YVRKKSKKHGQKSQIEGHLFKGARVL 130
>gi|254780603|ref|YP_003065016.1| tRNA/rRNA methyltransferase protein [Candidatus Liberibacter
asiaticus str. psy62]
Length = 282
Score = 23.5 bits (49), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 13/40 (32%), Positives = 19/40 (47%)
Query: 87 MGATVTGIDPSTKNIAIAKNHANMKNINIDYRVSCAEEIA 126
+GA G+ P T+ A + H +M I VS A +A
Sbjct: 233 LGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVA 272
>gi|254780922|ref|YP_003065335.1| glucose-1-phosphate thymidylyltransferase [Candidatus Liberibacter
asiaticus str. psy62]
Length = 292
Score = 23.5 bits (49), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 11/31 (35%), Positives = 17/31 (54%)
Query: 119 VSCAEEIAETDEKFDIILNMEVIEHVDNIPY 149
V+C EEIA + + ++I+H N PY
Sbjct: 248 VACPEEIAYRHDFINESQFFQLIDHFGNSPY 278
>gi|254780968|ref|YP_003065381.1| hypothetical protein CLIBASIA_04345 [Candidatus Liberibacter
asiaticus str. psy62]
Length = 106
Score = 23.1 bits (48), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 8/23 (34%), Positives = 13/23 (56%)
Query: 203 PTEMECFLAANKVKIIDRVGVVY 225
PT C + V+++D +GV Y
Sbjct: 26 PTSPRCGFSGKVVQVLDSLGVSY 48
>gi|254780398|ref|YP_003064811.1| dimethyladenosine transferase [Candidatus Liberibacter asiaticus
str. psy62]
Length = 284
Score = 22.7 bits (47), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 7/31 (22%), Positives = 19/31 (61%)
Query: 59 SDDTHPFKGLRILDLGCGGGLLSEPMAQMGA 89
++ + G+ ++++G G G L++ + +GA
Sbjct: 40 AESSGSLDGITVIEIGAGPGNLTQMLLTLGA 70
>gi|254780765|ref|YP_003065178.1| 3-deoxy-manno-octulosonate cytidylyltransferase [Candidatus
Liberibacter asiaticus str. psy62]
Length = 268
Score = 22.7 bits (47), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 27/52 (51%), Gaps = 2/52 (3%)
Query: 118 RVSCAEEIAETDEKFDIILNMEVIEHVDNIPYFIKTCCSLLLSNGLMFISTI 169
R+ A I ++D+K II+NM+ + NI I L L N ++ I T+
Sbjct: 85 RIFEALNIIDSDKKSQIIVNMQA--DIPNIEPEILASVLLPLQNPIVDIGTL 134
>gi|254780616|ref|YP_003065029.1| F0F1 ATP synthase subunit gamma [Candidatus Liberibacter asiaticus
str. psy62]
Length = 294
Score = 22.3 bits (46), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 7/22 (31%), Positives = 15/22 (68%)
Query: 79 LLSEPMAQMGATVTGIDPSTKN 100
+L +++GA +T +D +T+N
Sbjct: 239 ILENKASEVGARITAMDNATRN 260
Database: las_proteome
Posted date: Jun 5, 2011 6:30 PM
Number of letters in database: 328,796
Number of sequences in database: 1233
Lambda K H
0.321 0.136 0.418
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 168,096
Number of Sequences: 1233
Number of extensions: 6813
Number of successful extensions: 21
Number of sequences better than 100.0: 13
Number of HSP's better than 100.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 11
Number of HSP's gapped (non-prelim): 13
length of query: 254
length of database: 328,796
effective HSP length: 72
effective length of query: 182
effective length of database: 240,020
effective search space: 43683640
effective search space used: 43683640
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 37 (18.9 bits)