HHsearch alignment for GI: 254780873 and conserved domain: CHL00100

>CHL00100 ilvH acetohydroxyacid synthase small subunit.
Probab=95.23  E-value=0.2  Score=29.51  Aligned_cols=125  Identities=16%  Similarity=0.125  Sum_probs=81.7

Q ss_pred             CCCCCCCCCHHHHHHHHCCCCEECCCCCCCCCCCCCCCEEECCHH--HHHHHHHHHHHHHHHCCCCEE----EEECCEEE
Q ss_conf             500048410001455412850111234432222333101212302--477668878988860596158----97489169
Q gi|254780873|r  274 LRDHPGISASIFSPLAEAHINIDMIIQNVSEDGQYVDITFTTPSS--SLEKALAVLSDNKENIGYDVI----QHEDNLVK  347 (411)
Q Consensus       274 ~~~~~g~~a~If~~La~~~I~VdmI~qs~s~~~~~~~Isf~i~~~--d~~~~~~~L~~~~~~~~~~~I----~~~~~~a~  347 (411)
T Consensus         9 VeN~pGvL~RV~glFsrRgyNIeSL~V~~te~~~iSR~Tiv~~gd~~~ieQI~kQL~KLidVi~V~dlt~~~~v~REl~L   88 (172)
T CHL00100          9 VEDEAGVLTRIAGLFARRGFNIESLAVGPAEQIGISRITMVVPGDNRTIEQLTKQLYKLVNILKVQDITNIPSVERELML   88 (172)
T ss_pred             EECCCCHHHHHHHHHHCCCCCEEEEEEECCCCCCEEEEEEEEECCHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHEEEE
T ss_conf             97786799999999851786723699721489981599999968999999999999558270264306784456435189


Q ss_pred             EEEECCCCCCCCCHHHHHHHHHHHCCCEEEEEEECCCEEEEEECHHHHHHHHHHHH
Q ss_conf             99966786678557999999998679829999707848999970889999999999
Q gi|254780873|r  348 ISAIGIGMQSYAGVASAFFLCLAEKGINIKAITTSEIKISVLIDSAYTELAVRSLH  403 (411)
Q Consensus       348 ISvVG~gm~~~~Giaakif~aL~~~~InI~~issSe~~IS~VV~~~d~~~Av~~LH  403 (411)
T Consensus        89 iKV~~~-----~~~r~ei~~i~~~f~akIvdv~~~s~iiE~tG~~~kida~i~~L~  139 (172)
T CHL00100         89 IKINSN-----SQNRSEILDIVQIFRAKVVDLSEELLILEVTGDPGKIVAIEQLLT  139 (172)
T ss_pred             EEEECC-----CCCHHHHHHHHHHCCCEEEEECCCEEEEEEECCHHHHHHHHHHHH
T ss_conf             999658-----314899999999729799990699899999389899999999750