HHsearch alignment for GI: 254780873 and conserved domain: CHL00100
>CHL00100 ilvH acetohydroxyacid synthase small subunit.
Probab=95.23 E-value=0.2 Score=29.51 Aligned_cols=125 Identities=16% Similarity=0.125 Sum_probs=81.7
Q ss_pred CCCCCCCCCHHHHHHHHCCCCEECCCCCCCCCCCCCCCEEECCHH--HHHHHHHHHHHHHHHCCCCEE----EEECCEEE
Q ss_conf 500048410001455412850111234432222333101212302--477668878988860596158----97489169
Q gi|254780873|r 274 LRDHPGISASIFSPLAEAHINIDMIIQNVSEDGQYVDITFTTPSS--SLEKALAVLSDNKENIGYDVI----QHEDNLVK 347 (411)
Q Consensus 274 ~~~~~g~~a~If~~La~~~I~VdmI~qs~s~~~~~~~Isf~i~~~--d~~~~~~~L~~~~~~~~~~~I----~~~~~~a~ 347 (411)
T Consensus 9 VeN~pGvL~RV~glFsrRgyNIeSL~V~~te~~~iSR~Tiv~~gd~~~ieQI~kQL~KLidVi~V~dlt~~~~v~REl~L 88 (172)
T CHL00100 9 VEDEAGVLTRIAGLFARRGFNIESLAVGPAEQIGISRITMVVPGDNRTIEQLTKQLYKLVNILKVQDITNIPSVERELML 88 (172)
T ss_pred EECCCCHHHHHHHHHHCCCCCEEEEEEECCCCCCEEEEEEEEECCHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHEEEE
T ss_conf 97786799999999851786723699721489981599999968999999999999558270264306784456435189
Q ss_pred EEEECCCCCCCCCHHHHHHHHHHHCCCEEEEEEECCCEEEEEECHHHHHHHHHHHH
Q ss_conf 99966786678557999999998679829999707848999970889999999999
Q gi|254780873|r 348 ISAIGIGMQSYAGVASAFFLCLAEKGINIKAITTSEIKISVLIDSAYTELAVRSLH 403 (411)
Q Consensus 348 ISvVG~gm~~~~Giaakif~aL~~~~InI~~issSe~~IS~VV~~~d~~~Av~~LH 403 (411)
T Consensus 89 iKV~~~-----~~~r~ei~~i~~~f~akIvdv~~~s~iiE~tG~~~kida~i~~L~ 139 (172)
T CHL00100 89 IKINSN-----SQNRSEILDIVQIFRAKVVDLSEELLILEVTGDPGKIVAIEQLLT 139 (172)
T ss_pred EEEECC-----CCCHHHHHHHHHHCCCEEEEECCCEEEEEEECCHHHHHHHHHHHH
T ss_conf 999658-----314899999999729799990699899999389899999999750