HHsearch alignment for GI: 254780873 and conserved domain: PRK05007
>PRK05007 PII uridylyl-transferase; Provisional.
Probab=91.14 E-value=1.3 Score=24.08 Aligned_cols=117 Identities=19% Similarity=0.243 Sum_probs=70.0
Q ss_pred HHCCCCCCCCCCCCCHHHHHHHHCCCCEEC--CCCCCCCCCCCCCCEEEC--------CHHHHHHHHHHHHHHHHH----
Q ss_conf 001277500048410001455412850111--234432222333101212--------302477668878988860----
Q gi|254780873|r 268 QISLRRLRDHPGISASIFSPLAEAHINIDM--IIQNVSEDGQYVDITFTT--------PSSSLEKALAVLSDNKEN---- 333 (411)
Q Consensus 268 ~Iti~~~~~~~g~~a~If~~La~~~I~Vdm--I~qs~s~~~~~~~Isf~i--------~~~d~~~~~~~L~~~~~~---- 333 (411)
T Consensus 700 ei~I~-~~Dr~~LFa~i~g~L~~~~lnI~~A~I~t--~~dg~~ld-~F~V~~~~g~~~~~~r~~~i~~~L~~~l~~~~~~ 775 (881)
T PRK05007 700 EIFIY-SPDRPYLFAAVCAELDRRNLSVHDAQIFT--SRDGMAMD-TFIVLEPDGSPLSQDRHQVIRKALEQALTQSSPQ 775 (881)
T ss_pred EEEEE-EECCCCHHHHHHHHHHHCCCEEEEEEEEE--CCCCEEEE-EEEEECCCCCCCCHHHHHHHHHHHHHHHCCCCCC
T ss_conf 99999-60788739999999986898368878798--17980899-9999778899899899999999999987288744
Q ss_pred -------------CCC-CEEEE----ECCEEEEEEECCCCCCCCCHHHHHHHHHHHCCCEEEE--EEECCCE--EEEEEC
Q ss_conf -------------596-15897----4891699996678667855799999999867982999--9707848--999970
Q gi|254780873|r 334 -------------IGY-DVIQH----EDNLVKISAIGIGMQSYAGVASAFFLCLAEKGINIKA--ITTSEIK--ISVLID 391 (411)
Q Consensus 334 -------------~~~-~~I~~----~~~~a~ISvVG~gm~~~~Giaakif~aL~~~~InI~~--issSe~~--IS~VV~ 391 (411)
T Consensus 776 ~~~~r~~~r~~k~f~v~t~V~~~~~~s~~~TviEv~a---~DrpGLL~~I~~~f~~~~l~I~~AKIsT~GerveDvFyVt 852 (881)
T PRK05007 776 PPKPRRLPRKLRHFNVPTEVNFLPTHTDRKSFMELIA---LDQPGLLARVGKIFADLGISLHGAKITTIGERVEDLFILA 852 (881)
T ss_pred CCCCCCCCCCCCCCCCCCEEEECCCCCCCEEEEEEEE---CCCHHHHHHHHHHHHHCCCEEEEEEECCCCCEEEEEEEEE
T ss_conf 3000346743457899987998228888738999985---8806799999999998898798989625476489999998