HHsearch alignment for GI: 254780873 and conserved domain: PRK11589
>PRK11589 gcvR glycine cleavage system transcriptional repressor; Provisional.
Probab=96.73 E-value=0.019 Score=36.30 Aligned_cols=142 Identities=13% Similarity=0.144 Sum_probs=82.7
Q ss_pred CCCCCHHCCCCCCCCCCCCCHHHHHHHHCCCCEECCCCCCCCCCCCCCCEEEC--CHHHHHHHHHHHHHHHHHCCCCEEE
Q ss_conf 46620001277500048410001455412850111234432222333101212--3024776688789888605961589
Q gi|254780873|r 263 TKDEAQISLRRLRDHPGISASIFSPLAEAHINIDMIIQNVSEDGQYVDITFTT--PSSSLEKALAVLSDNKENIGYDVIQ 340 (411)
Q Consensus 263 ~~~i~~Iti~~~~~~~g~~a~If~~La~~~I~VdmI~qs~s~~~~~~~Isf~i--~~~d~~~~~~~L~~~~~~~~~~~I~ 340 (411)
T Consensus 5 ~~~~lvit~~G-~DrpGiv~~v~~~~~~~g~ni~dS--rm~~lg~~f~~imlvSg~~~ai~~lE~~Lp~~~~el~L~~~~ 81 (183)
T PRK11589 5 SQHYLVITALG-ADRPGIVNTITRHVSSCGCNIEDS--RLAMLGEEFTFIMLLSGSWNAITLIESTLPLKGAELDLLIVM 81 (183)
T ss_pred CCCEEEEEEEC-CCCCHHHHHHHHHHHHCCCCCHHH--HHHHHCCEEEEEEEECCCHHHHHHHHHHCCHHCCCCCEEEEE
T ss_conf 55279999970-898738999999999769987266--688745706999994088758899986160220557749999
Q ss_pred E---------ECCEEEEEEECCCCCCCCCHHHHHHHHHHHCCCEEEEEEE-----C-----CCEEEEEE--C----HHHH
Q ss_conf 7---------4891699996678667855799999999867982999970-----7-----84899997--0----8899
Q gi|254780873|r 341 H---------EDNLVKISAIGIGMQSYAGVASAFFLCLAEKGINIKAITT-----S-----EIKISVLI--D----SAYT 395 (411)
Q Consensus 341 ~---------~~~~a~ISvVG~gm~~~~Giaakif~aL~~~~InI~~iss-----S-----e~~IS~VV--~----~~d~ 395 (411)
T Consensus 82 ~rt~~~~~~~~~~~~~v~v~g---~D~PGIV~~vt~~la~~~InI~~L~T~t~~A~~~~~~~f~~~~t~~iPa~~~i~~L 158 (183)
T PRK11589 82 KRTTARPRPAMPATVWVQVEV---ADSPHLIERFTALFDSHHMNIAELVSRTQPAEGERAAQLHIQITAHSPASQDAANI 158 (183)
T ss_pred ECCCCCCCCCCCCEEEEEEEE---CCCCCHHHHHHHHHHHCCCCHHHHEEEEECCCCCCCCEEEEEEEECCCCCCCHHHH
T ss_conf 625666676778159999997---89898899999999986998765222114499999736999999807998999999
Q ss_pred HHHHHHHHHHCCCCC
Q ss_conf 999999998709777
Q gi|254780873|r 396 ELAVRSLHSCYGLDV 410 (411)
Q Consensus 396 ~~Av~~LH~~F~ld~ 410 (411)
T Consensus 159 ~~~f~~lc~eLnld~ 173 (183)
T PRK11589 159 EQAFKALCTELNAQG 173 (183)
T ss_pred HHHHHHHHHHHCCEE
T ss_conf 999999999829838