HHsearch alignment for GI: 254780873 and conserved domain: cd04236

>cd04236 AAK_NAGS-Urea AAK_NAGS-Urea: N-acetylglutamate (NAG) kinase-like domain of the NAG Synthase (NAGS) of the urea cycle found in animals. Ureogenic NAGS is a mitochondrial enzyme catalyzing the formation of NAG from acetylcoenzyme A and L-glutamate; NAG is an essential allosteric activator of carbamylphosphate synthase I, the first and rate limiting enzyme of the urea cycle. Ureogenic NAGS activity is dependent on the concentration of glutamate (substrate) and arginine (activator). Domain architecture of ureogenic NAGS consists of an N-terminal NAG kinase-like (ArgB) domain (this CD) and a C-terminal DUF619 domain. Members of this CD belong to the protein superfamily, the Amino Acid Kinase Family (AAKF).
Probab=99.20  E-value=4.9e-10  Score=87.46  Aligned_cols=179  Identities=13%  Similarity=0.158  Sum_probs=126.1

Q ss_pred             CEEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf             66999608584588899999999999999679988999806873048999999986148998899999983129999999
Q gi|254780873|r    2 ARIVMKFGGTSVANIDCIRSAALHVKREVDRGQEVAMVVSAMSGETDRLAELCRQVTSIDNARERDVVISTGEQVSSGLM   81 (411)
Q Consensus         2 ~~iV~KfGGtSv~~~~~i~~v~~~i~~~~~~g~~~ivVvSA~~g~Td~L~~l~~~~~~~~~~~~~d~i~s~GE~~s~~l~   81 (411)
T Consensus        36 ~faVIKvGGaVl~d~~~l~~l~~~lsfL~~vGl~pIVVHG~g~~i~~~~-------~~~~~~~~~~v~~~~-----n~~l  103 (271)
T cd04236          36 AFAVLEVDHSVFRSLEMVQSLSFGLAFLQRMDMKLLVVMGLSAPDGTNM-------SDLELQAARSRLVKD-----CKTL  103 (271)
T ss_pred             CEEEEEECHHHEECHHHHHHHHHHHHHHHHCCCEEEEEECCCHHCCCCC-------CCHHHHHHHHHHHHH-----HHHH
T ss_conf             7699998813150588999999999999988994899938970115574-------601225676663799-----9999


Q ss_pred             HHHHHHCCCCCCCCCCCCCCCCCCCCC--C-CCCCCCCCCCCHHHHHHHCCEEEEECCCCCCCCCCEEEECCCCCCHHHH
Q ss_conf             999984399863567332455121335--5-2000123621003343106805860343335568424430686242899
Q gi|254780873|r   82 VLALQSLGIQAISLQGWQIPIMTDSLH--G-MARICRVDEKKIVTHLKKKQVVVITGFQGLSHDNSVTTLGRGGSDTSAV  158 (411)
Q Consensus        82 a~~l~~~G~~a~~l~~~~~~i~t~~~~--~-~a~~~~~~~~~l~~~l~~~~v~v~~Gf~g~~~~g~~ttlgRGGSD~tA~  158 (411)
T Consensus       104 V~aL~~~G~~A~~i~s~~~~~~~~~~e~~~~vG~~~~v~~~~i~~~i~~g~IPVIap-lG~~~~Gq~~NIN---ADtaA~  179 (271)
T cd04236         104 VEALQANSAAAHPLFSGESVLQAEEPEPGASKGPSVSVDTELLQWCLGSGHIPLVCP-IGETSSGRSVSLD---SSEVTT  179 (271)
T ss_pred             HHHHHHCCCCEEEEECCCCEEEECCCCCCCCCCCCEEEEHHHHHHHHHCCCCCEECC-CEECCCCCEEEEC---HHHHHH
T ss_conf             999997699624541687337722530137668713860799999997899718825-2378999888775---899999


Q ss_pred             HHHHHHCHHHHHHHCCHHHHEECCCCCCCCCCEECCCCHHHHHH
Q ss_conf             99988473455653461440245842123441105679999999
Q gi|254780873|r  159 AIAAAIKADRCDIYTDVCGIYTTDPRIEPKAHLMKKISFEEMLE  202 (411)
Q Consensus       159 ~ia~~l~A~~~~i~tdV~Gi~taDPr~v~~a~~i~~lsy~Ea~e  202 (411)
T Consensus       180 aiA~aL~a~Kli~LTdv~Gvld~~------~~lI~~i~l~~~~~  217 (271)
T cd04236         180 AIAKALQPIKVIFLNRSGGLRDQK------HKVLPQVHLPADLP  217 (271)
T ss_pred             HHHHHCCCCEEEEEECCCCEECCC------CCEECEECHHHHHH
T ss_conf             999864876799980787407789------98822016188999