HHsearch alignment for GI: 254780873 and conserved domain: cd04236
>cd04236 AAK_NAGS-Urea AAK_NAGS-Urea: N-acetylglutamate (NAG) kinase-like domain of the NAG Synthase (NAGS) of the urea cycle found in animals. Ureogenic NAGS is a mitochondrial enzyme catalyzing the formation of NAG from acetylcoenzyme A and L-glutamate; NAG is an essential allosteric activator of carbamylphosphate synthase I, the first and rate limiting enzyme of the urea cycle. Ureogenic NAGS activity is dependent on the concentration of glutamate (substrate) and arginine (activator). Domain architecture of ureogenic NAGS consists of an N-terminal NAG kinase-like (ArgB) domain (this CD) and a C-terminal DUF619 domain. Members of this CD belong to the protein superfamily, the Amino Acid Kinase Family (AAKF).
Probab=99.20 E-value=4.9e-10 Score=87.46 Aligned_cols=179 Identities=13% Similarity=0.158 Sum_probs=126.1
Q ss_pred CEEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf 66999608584588899999999999999679988999806873048999999986148998899999983129999999
Q gi|254780873|r 2 ARIVMKFGGTSVANIDCIRSAALHVKREVDRGQEVAMVVSAMSGETDRLAELCRQVTSIDNARERDVVISTGEQVSSGLM 81 (411)
Q Consensus 2 ~~iV~KfGGtSv~~~~~i~~v~~~i~~~~~~g~~~ivVvSA~~g~Td~L~~l~~~~~~~~~~~~~d~i~s~GE~~s~~l~ 81 (411)
T Consensus 36 ~faVIKvGGaVl~d~~~l~~l~~~lsfL~~vGl~pIVVHG~g~~i~~~~-------~~~~~~~~~~v~~~~-----n~~l 103 (271)
T cd04236 36 AFAVLEVDHSVFRSLEMVQSLSFGLAFLQRMDMKLLVVMGLSAPDGTNM-------SDLELQAARSRLVKD-----CKTL 103 (271)
T ss_pred CEEEEEECHHHEECHHHHHHHHHHHHHHHHCCCEEEEEECCCHHCCCCC-------CCHHHHHHHHHHHHH-----HHHH
T ss_conf 7699998813150588999999999999988994899938970115574-------601225676663799-----9999
Q ss_pred HHHHHHCCCCCCCCCCCCCCCCCCCCC--C-CCCCCCCCCCCHHHHHHHCCEEEEECCCCCCCCCCEEEECCCCCCHHHH
Q ss_conf 999984399863567332455121335--5-2000123621003343106805860343335568424430686242899
Q gi|254780873|r 82 VLALQSLGIQAISLQGWQIPIMTDSLH--G-MARICRVDEKKIVTHLKKKQVVVITGFQGLSHDNSVTTLGRGGSDTSAV 158 (411)
Q Consensus 82 a~~l~~~G~~a~~l~~~~~~i~t~~~~--~-~a~~~~~~~~~l~~~l~~~~v~v~~Gf~g~~~~g~~ttlgRGGSD~tA~ 158 (411)
T Consensus 104 V~aL~~~G~~A~~i~s~~~~~~~~~~e~~~~vG~~~~v~~~~i~~~i~~g~IPVIap-lG~~~~Gq~~NIN---ADtaA~ 179 (271)
T cd04236 104 VEALQANSAAAHPLFSGESVLQAEEPEPGASKGPSVSVDTELLQWCLGSGHIPLVCP-IGETSSGRSVSLD---SSEVTT 179 (271)
T ss_pred HHHHHHCCCCEEEEECCCCEEEECCCCCCCCCCCCEEEEHHHHHHHHHCCCCCEECC-CEECCCCCEEEEC---HHHHHH
T ss_conf 999997699624541687337722530137668713860799999997899718825-2378999888775---899999
Q ss_pred HHHHHHCHHHHHHHCCHHHHEECCCCCCCCCCEECCCCHHHHHH
Q ss_conf 99988473455653461440245842123441105679999999
Q gi|254780873|r 159 AIAAAIKADRCDIYTDVCGIYTTDPRIEPKAHLMKKISFEEMLE 202 (411)
Q Consensus 159 ~ia~~l~A~~~~i~tdV~Gi~taDPr~v~~a~~i~~lsy~Ea~e 202 (411)
T Consensus 180 aiA~aL~a~Kli~LTdv~Gvld~~------~~lI~~i~l~~~~~ 217 (271)
T cd04236 180 AIAKALQPIKVIFLNRSGGLRDQK------HKVLPQVHLPADLP 217 (271)
T ss_pred HHHHHCCCCEEEEEECCCCEECCC------CCEECEECHHHHHH
T ss_conf 999864876799980787407789------98822016188999