HHsearch alignment for GI: 254780873 and conserved domain: cd04258
>cd04258 AAK_AKiii-LysC-EC AAK_AKiii-LysC-EC: Amino Acid Kinase Superfamily (AAK), AKiii-LysC-EC: this CD includes the N-terminal catalytic aspartokinase (AK) domain of the lysine-sensitive aspartokinase isoenzyme AKIII. AKIII is a monofunctional class enzyme (LysC) found in some bacteria such as E. coli. Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. In E. coli, LysC is reported to be a homodimer of 50 kD subunits.
Probab=100.00 E-value=0 Score=559.56 Aligned_cols=236 Identities=40% Similarity=0.488 Sum_probs=211.8
Q ss_pred EEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHHHHCC----------------------
Q ss_conf 6999608584588899999999999999679988999806873048999999986148----------------------
Q gi|254780873|r 3 RIVMKFGGTSVANIDCIRSAALHVKREVDRGQEVAMVVSAMSGETDRLAELCRQVTSI---------------------- 60 (411)
Q Consensus 3 ~iV~KfGGtSv~~~~~i~~v~~~i~~~~~~g~~~ivVvSA~~g~Td~L~~l~~~~~~~---------------------- 60 (411)
T Consensus 1 m~V~KFGGtSv~~~~~i~~v~~ii~~---~~~~~vVVVSA~~gvTd~L~~~~~~~~~~~~~~~~~~~~~i~~~h~~~~~~ 77 (292)
T cd04258 1 MVVAKFGGTSVADYAAMLRCAAIVKS---DASVRLVVVSASAGVTNLLVALADAAESGEEIESIPQLHEIRAIHFAILNR 77 (292)
T ss_pred CEEEEECCCCCCCHHHHHHHHHHHHC---CCCCEEEEEECCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH
T ss_conf 98995786544889999999999975---899809999489997499999999874477166899999999999999987
Q ss_pred ------------------------------CCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf ------------------------------99889999998312999999999998439986356733245512133552
Q gi|254780873|r 61 ------------------------------DNARERDVVISTGEQVSSGLMVLALQSLGIQAISLQGWQIPIMTDSLHGM 110 (411)
Q Consensus 61 ------------------------------~~~~~~d~i~s~GE~~s~~l~a~~l~~~G~~a~~l~~~~~~i~t~~~~~~ 110 (411)
T Consensus 78 l~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~d~ils~GE~lSa~lla~~L~~~Gi~a~~~da~~~-i~td~~~~~ 156 (292)
T cd04258 78 LGAPEELRAKLEELLEELTQLAEGAALLGELSPASRDELLSFGERMSSLLFSEALREQGVPAEWFDVRTV-LRTDSRFGR 156 (292)
T ss_pred HCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEECHHHH-EEECCCCCC
T ss_conf 2473889999999999999998655421468888999998888899999999999977998589565790-574686653
Q ss_pred CCCCCCC-CCCH---HHHHHHCCEEEEECCCCCCCCCCEEEECCCCCCHHHHHHHHHHCHHHHHHHCCHHHHEECCCCCC
Q ss_conf 0001236-2100---33431068058603433355684244306862428999998847345565346144024584212
Q gi|254780873|r 111 ARICRVD-EKKI---VTHLKKKQVVVITGFQGLSHDNSVTTLGRGGSDTSAVAIAAAIKADRCDIYTDVCGIYTTDPRIE 186 (411)
Q Consensus 111 a~~~~~~-~~~l---~~~l~~~~v~v~~Gf~g~~~~g~~ttlgRGGSD~tA~~ia~~l~A~~~~i~tdV~Gi~taDPr~v 186 (411)
T Consensus 157 a~v~~~~~~~~~~~~~~~~~~~~i~Vv~GFig~~~~G~~ttLGRGGSDyTA~~la~~l~A~~v~iwtDV~Gi~taDPr~V 236 (292)
T cd04258 157 AAPDLNALAELAAKLLKPLLAGTVVVTQGFIGSTEKGRTTTLGRGGSDYSAALLAEALHAEELQIWTDVAGIYTTDPRIC 236 (292)
T ss_pred CCCCHHHHHHHHHHHHHHHCCCCEEEECCCCEECCCCCEEECCCCCCHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCC
T ss_conf 23538888999999986533798999358054379997775378961689999999769988999967887875899878
Q ss_pred CCCCEECCCCHHHHHHHHHCCCCCHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCCC
Q ss_conf 344110567999999988403110137887643313852676112377777654354545
Q gi|254780873|r 187 PKAHLMKKISFEEMLEMSSLGAKVMQVRSVELAMLYKMCLFVRSSFEDHGQQEQLGTLIC 246 (411)
Q Consensus 187 ~~a~~i~~lsy~Ea~eLa~~Gakvlhp~~~~~~~~~~ipi~i~ntf~~~~~~~~~GT~I~ 246 (411)
T Consensus 237 ~~A~~i~~lsy~EA~eLa~~GakVlHp~ti~p~~~~~Ipi~I~nt~~----p~~~GT~Is 292 (292)
T cd04258 237 PAARAIKEISFAEAAEMATFGAKVLHPATLLPAIRKNIPVFVGSSKD----PEAGGTLIT 292 (292)
T ss_pred CCCEECCCCCHHHHHHHHHCCCCCCCHHHHHHHHHCCCCEEEECCCC----CCCCCEEEC
T ss_conf 98767483699999999977973169999999998699489937899----899982549