HHsearch alignment for GI: 254780873 and conserved domain: cd04258

>cd04258 AAK_AKiii-LysC-EC AAK_AKiii-LysC-EC: Amino Acid Kinase Superfamily (AAK), AKiii-LysC-EC: this CD includes the N-terminal catalytic aspartokinase (AK) domain of the lysine-sensitive aspartokinase isoenzyme AKIII. AKIII is a monofunctional class enzyme (LysC) found in some bacteria such as E. coli. Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. In E. coli, LysC is reported to be a homodimer of 50 kD subunits.
Probab=100.00  E-value=0  Score=559.56  Aligned_cols=236  Identities=40%  Similarity=0.488  Sum_probs=211.8

Q ss_pred             EEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHHHHCC----------------------
Q ss_conf             6999608584588899999999999999679988999806873048999999986148----------------------
Q gi|254780873|r    3 RIVMKFGGTSVANIDCIRSAALHVKREVDRGQEVAMVVSAMSGETDRLAELCRQVTSI----------------------   60 (411)
Q Consensus         3 ~iV~KfGGtSv~~~~~i~~v~~~i~~~~~~g~~~ivVvSA~~g~Td~L~~l~~~~~~~----------------------   60 (411)
T Consensus         1 m~V~KFGGtSv~~~~~i~~v~~ii~~---~~~~~vVVVSA~~gvTd~L~~~~~~~~~~~~~~~~~~~~~i~~~h~~~~~~   77 (292)
T cd04258           1 MVVAKFGGTSVADYAAMLRCAAIVKS---DASVRLVVVSASAGVTNLLVALADAAESGEEIESIPQLHEIRAIHFAILNR   77 (292)
T ss_pred             CEEEEECCCCCCCHHHHHHHHHHHHC---CCCCEEEEEECCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH
T ss_conf             98995786544889999999999975---899809999489997499999999874477166899999999999999987


Q ss_pred             ------------------------------CCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             ------------------------------99889999998312999999999998439986356733245512133552
Q gi|254780873|r   61 ------------------------------DNARERDVVISTGEQVSSGLMVLALQSLGIQAISLQGWQIPIMTDSLHGM  110 (411)
Q Consensus        61 ------------------------------~~~~~~d~i~s~GE~~s~~l~a~~l~~~G~~a~~l~~~~~~i~t~~~~~~  110 (411)
T Consensus        78 l~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~d~ils~GE~lSa~lla~~L~~~Gi~a~~~da~~~-i~td~~~~~  156 (292)
T cd04258          78 LGAPEELRAKLEELLEELTQLAEGAALLGELSPASRDELLSFGERMSSLLFSEALREQGVPAEWFDVRTV-LRTDSRFGR  156 (292)
T ss_pred             HCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEECHHHH-EEECCCCCC
T ss_conf             2473889999999999999998655421468888999998888899999999999977998589565790-574686653


Q ss_pred             CCCCCCC-CCCH---HHHHHHCCEEEEECCCCCCCCCCEEEECCCCCCHHHHHHHHHHCHHHHHHHCCHHHHEECCCCCC
Q ss_conf             0001236-2100---33431068058603433355684244306862428999998847345565346144024584212
Q gi|254780873|r  111 ARICRVD-EKKI---VTHLKKKQVVVITGFQGLSHDNSVTTLGRGGSDTSAVAIAAAIKADRCDIYTDVCGIYTTDPRIE  186 (411)
Q Consensus       111 a~~~~~~-~~~l---~~~l~~~~v~v~~Gf~g~~~~g~~ttlgRGGSD~tA~~ia~~l~A~~~~i~tdV~Gi~taDPr~v  186 (411)
T Consensus       157 a~v~~~~~~~~~~~~~~~~~~~~i~Vv~GFig~~~~G~~ttLGRGGSDyTA~~la~~l~A~~v~iwtDV~Gi~taDPr~V  236 (292)
T cd04258         157 AAPDLNALAELAAKLLKPLLAGTVVVTQGFIGSTEKGRTTTLGRGGSDYSAALLAEALHAEELQIWTDVAGIYTTDPRIC  236 (292)
T ss_pred             CCCCHHHHHHHHHHHHHHHCCCCEEEECCCCEECCCCCEEECCCCCCHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCC
T ss_conf             23538888999999986533798999358054379997775378961689999999769988999967887875899878


Q ss_pred             CCCCEECCCCHHHHHHHHHCCCCCHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCCC
Q ss_conf             344110567999999988403110137887643313852676112377777654354545
Q gi|254780873|r  187 PKAHLMKKISFEEMLEMSSLGAKVMQVRSVELAMLYKMCLFVRSSFEDHGQQEQLGTLIC  246 (411)
Q Consensus       187 ~~a~~i~~lsy~Ea~eLa~~Gakvlhp~~~~~~~~~~ipi~i~ntf~~~~~~~~~GT~I~  246 (411)
T Consensus       237 ~~A~~i~~lsy~EA~eLa~~GakVlHp~ti~p~~~~~Ipi~I~nt~~----p~~~GT~Is  292 (292)
T cd04258         237 PAARAIKEISFAEAAEMATFGAKVLHPATLLPAIRKNIPVFVGSSKD----PEAGGTLIT  292 (292)
T ss_pred             CCCEECCCCCHHHHHHHHHCCCCCCCHHHHHHHHHCCCCEEEECCCC----CCCCCEEEC
T ss_conf             98767483699999999977973169999999998699489937899----899982549